******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Six4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:2182327-2182447 1.0000 120 chr3L:14964340-14964460 1.0000 120 chr3R:15587630-15587750 1.0000 120 chr3R:10626209-10626329 1.0000 120 chr3L:15320321-15320441 1.0000 120 chr2L:19219823-19219943 1.0000 120 chr2R:20836049-20836169 1.0000 120 chr3L:7634859-7634979 1.0000 120 chr3L:3288548-3288668 1.0000 120 chr3R:24753673-24753793 1.0000 120 chr3R:12985906-12986026 1.0000 120 chr3L:2865419-2865539 1.0000 120 chr3L:20796858-20796978 1.0000 120 chr3R:5636890-5637010 1.0000 120 chr2L:8552573-8552693 1.0000 120 chr3L:3852028-3852148 1.0000 120 chrX:8295494-8295614 1.0000 120 chr3R:26010629-26010749 1.0000 120 chr3L:14192717-14192837 1.0000 120 chr3L:11309872-11309992 1.0000 120 chr2L:3852218-3852338 1.0000 120 chr2L:21096542-21096662 1.0000 120 chr2L:19517466-19517586 1.0000 120 chrX:3136858-3136978 1.0000 120 chr3R:19014874-19014994 1.0000 120 chr2L:21149180-21149300 1.0000 120 chrX:2155930-2156050 1.0000 120 chr2R:21091933-21092053 1.0000 120 chr3L:12037907-12038027 1.0000 120 chr3L:4614065-4614185 1.0000 120 chr3R:25174315-25174435 1.0000 120 chr3R:21420038-21420158 1.0000 120 chr2R:22886151-22886271 1.0000 120 chr2R:21869762-21869882 1.0000 120 chr3L:8629044-8629164 1.0000 120 chr2L:14497833-14497953 1.0000 120 chr3R:23293503-23293623 1.0000 120 chr3L:11408925-11409045 1.0000 120 chr3L:18349501-18349621 1.0000 120 chrX:11341088-11341208 1.0000 120 chr3L:8029466-8029586 1.0000 120 chr3L:20471029-20471149 1.0000 120 chrX:19843109-19843229 1.0000 120 chr2R:22661302-22661422 1.0000 120 chr3R:10580759-10580879 1.0000 120 chr2L:3819098-3819218 1.0000 120 chr2R:13621345-13621465 1.0000 120 chr2R:21323939-21324059 1.0000 120 chr2L:11091194-11091314 1.0000 120 chr2R:7433157-7433277 1.0000 120 chr2L:7492040-7492160 1.0000 120 chr3R:29089765-29089885 1.0000 120 chr3L:18872605-18872725 1.0000 120 chr2R:21527404-21527524 1.0000 120 chr2R:17533822-17533942 1.0000 120 chr2R:19265133-19265253 1.0000 120 chr3L:21821803-21821923 1.0000 120 chr3L:159586-159706 1.0000 120 chr2R:22384525-22384645 1.0000 120 chrX:11109215-11109335 1.0000 120 chr3L:8423158-8423278 1.0000 120 chr2R:21525305-21525425 1.0000 120 chr2R:16091973-16092093 1.0000 120 chrX:12242503-12242623 1.0000 120 chr3L:11486013-11486133 1.0000 120 chrX:7617075-7617195 1.0000 120 chr2L:6357109-6357229 1.0000 120 chr2R:21178707-21178827 1.0000 120 chrX:3455580-3455700 1.0000 120 chrX:3357995-3358115 1.0000 120 chr3L:14172698-14172818 1.0000 120 chr3L:19845110-19845230 1.0000 120 chr3L:1151898-1152018 1.0000 120 chr2L:1214579-1214699 1.0000 120 chr2L:1926014-1926134 1.0000 120 chr2L:19452509-19452629 1.0000 120 chrX:10825465-10825585 1.0000 120 chr3L:15321009-15321129 1.0000 120 chrX:14622337-14622457 1.0000 120 chr3L:12668117-12668237 1.0000 120 chr2L:7957140-7957260 1.0000 120 chr3L:1578641-1578761 1.0000 120 chr4:1218922-1219042 1.0000 120 chrX:7968389-7968509 1.0000 120 chrX:5968189-5968309 1.0000 120 chr3L:8544820-8544940 1.0000 120 chr3L:15532794-15532914 1.0000 120 chr2R:14915058-14915178 1.0000 120 chrX:10601767-10601887 1.0000 120 chrX:16655854-16655974 1.0000 120 chr3L:20792959-20793079 1.0000 120 chr3L:14999646-14999766 1.0000 120 chrX:19352955-19353075 1.0000 120 chr3L:5630187-5630307 1.0000 120 chr3R:31134161-31134281 1.0000 120 chr2L:20890030-20890150 1.0000 120 chr2L:18906720-18906840 1.0000 120 chr3R:11617526-11617646 1.0000 120 chr3L:1534207-1534327 1.0000 120 chrX:771814-771934 1.0000 120 chrX:759458-759578 1.0000 120 chr3L:13923477-13923597 1.0000 120 chr2R:14161250-14161370 1.0000 120 chr3R:6760844-6760964 1.0000 120 chr2L:14562410-14562530 1.0000 120 chr3R:24817181-24817301 1.0000 120 chrX:9121001-9121121 1.0000 120 chr3L:797035-797155 1.0000 120 chr2L:7155027-7155147 1.0000 120 chr3R:25004868-25004988 1.0000 120 chr2R:11970347-11970467 1.0000 120 chrX:4498396-4498516 1.0000 120 chr3R:8867897-8868017 1.0000 120 chr3L:745673-745793 1.0000 120 chr3R:27604734-27604854 1.0000 120 chr3L:11303959-11304079 1.0000 120 chr3R:16099052-16099172 1.0000 120 chr3R:26900143-26900263 1.0000 120 chr3L:20517033-20517153 1.0000 120 chr2R:10681341-10681461 1.0000 120 chr2L:3598645-3598765 1.0000 120 chr2R:17469491-17469611 1.0000 120 chr3L:9505351-9505471 1.0000 120 chr4:1053913-1054033 1.0000 120 chr3L:18223526-18223646 1.0000 120 chr2L:14377021-14377141 1.0000 120 chr3L:20518126-20518246 1.0000 120 chr3R:9237900-9238020 1.0000 120 chr3L:9042758-9042878 1.0000 120 chr3L:18250878-18250998 1.0000 120 chr2L:19376326-19376446 1.0000 120 chr2L:20915430-20915550 1.0000 120 chrX:10067665-10067785 1.0000 120 chr3R:18906431-18906551 1.0000 120 chr3R:10636148-10636268 1.0000 120 chr2L:9594974-9595094 1.0000 120 chr3L:11074599-11074719 1.0000 120 chr3L:5987834-5987954 1.0000 120 chr2R:23180947-23181067 1.0000 120 chr3L:14131816-14131936 1.0000 120 chr2R:19292114-19292234 1.0000 120 chr3L:10206304-10206424 1.0000 120 chr3L:16749796-16749916 1.0000 120 chr3R:27988937-27989057 1.0000 120 chr3L:3855368-3855488 1.0000 120 chr2R:15835449-15835569 1.0000 120 chr2R:17469260-17469380 1.0000 120 chr3R:10100709-10100829 1.0000 120 chr2L:7270393-7270513 1.0000 120 chr3L:11552082-11552202 1.0000 120 chr2R:23970194-23970314 1.0000 120 chr3L:13189391-13189511 1.0000 120 chr2R:11435229-11435349 1.0000 120 chrX:3068407-3068527 1.0000 120 chrX:3367422-3367542 1.0000 120 chrX:17473410-17473530 1.0000 120 chr3R:23346980-23347100 1.0000 120 chr3L:10745724-10745844 1.0000 120 chr2L:858227-858347 1.0000 120 chrX:15890147-15890267 1.0000 120 chr3L:8395817-8395937 1.0000 120 chrX:1517639-1517759 1.0000 120 chr3R:4846962-4847082 1.0000 120 chr2L:10856604-10856724 1.0000 120 chr2R:20836268-20836388 1.0000 120 chr3L:5988752-5988872 1.0000 120 chr2R:19860301-19860421 1.0000 120 chr2L:3003570-3003690 1.0000 120 chr3R:6791444-6791564 1.0000 120 chr2L:20097250-20097370 1.0000 120 chr3L:4607850-4607970 1.0000 120 chr3L:8063568-8063688 1.0000 120 chr3L:5925970-5926090 1.0000 120 chr3R:27937933-27938053 1.0000 120 chrX:8777207-8777327 1.0000 120 chr3R:17680864-17680984 1.0000 120 chrX:6615597-6615717 1.0000 120 chr3L:13197663-13197783 1.0000 120 chrX:9652102-9652222 1.0000 120 chr2L:10856806-10856926 1.0000 120 chrX:12225498-12225618 1.0000 120 chrX:4010973-4011093 1.0000 120 chrX:17713598-17713718 1.0000 120 chr2R:14077589-14077709 1.0000 120 chr2L:16251940-16252060 1.0000 120 chr2L:10760791-10760911 1.0000 120 chr3L:8824038-8824158 1.0000 120 chr3R:25054585-25054705 1.0000 120 chr3L:16710345-16710465 1.0000 120 chr2R:9006883-9007003 1.0000 120 chr2R:7429351-7429471 1.0000 120 chrX:12466600-12466720 1.0000 120 chrX:20506077-20506197 1.0000 120 chr2L:1428497-1428617 1.0000 120 chrX:19770256-19770376 1.0000 120 chr3R:16771766-16771886 1.0000 120 chr3L:11993142-11993262 1.0000 120 chr3R:30532110-30532230 1.0000 120 chr3L:6981960-6982080 1.0000 120 chr2L:20945363-20945483 1.0000 120 chr2L:18900040-18900160 1.0000 120 chr2L:13073947-13074067 1.0000 120 chr2L:10442120-10442240 1.0000 120 chr3R:26117751-26117871 1.0000 120 chrX:16967555-16967675 1.0000 120 chr3L:8692270-8692390 1.0000 120 chr2L:974242-974362 1.0000 120 chr2L:18345348-18345468 1.0000 120 chr2R:13502417-13502537 1.0000 120 chr3R:22121357-22121477 1.0000 120 chr3L:11334120-11334240 1.0000 120 chr3L:15691346-15691466 1.0000 120 chr3L:12504115-12504235 1.0000 120 chrX:12454528-12454648 1.0000 120 chr2R:11738633-11738753 1.0000 120 chr3L:16411663-16411783 1.0000 120 chr3R:29522280-29522400 1.0000 120 chr3R:26444294-26444414 1.0000 120 chrX:11548861-11548981 1.0000 120 chr4:404455-404575 1.0000 120 chr2R:14909977-14910097 1.0000 120 chr3R:29738001-29738121 1.0000 120 chr2R:23176742-23176862 1.0000 120 chr3R:23709655-23709775 1.0000 120 chr2L:3477339-3477459 1.0000 120 chrX:7728418-7728538 1.0000 120 chr3R:21633348-21633468 1.0000 120 chr2R:21503235-21503355 1.0000 120 chr2L:1462106-1462226 1.0000 120 chr2R:9286647-9286767 1.0000 120 chr2L:5245722-5245842 1.0000 120 chr2L:4847354-4847474 1.0000 120 chr3R:8955067-8955187 1.0000 120 chr3L:15787495-15787615 1.0000 120 chr3L:19636905-19637025 1.0000 120 chr3R:15145586-15145706 1.0000 120 chr3R:17584215-17584335 1.0000 120 chr3R:8033071-8033191 1.0000 120 chrX:17738012-17738132 1.0000 120 chr2R:23574912-23575032 1.0000 120 chr2L:18921405-18921525 1.0000 120 chrX:12748380-12748500 1.0000 120 chrX:12221620-12221740 1.0000 120 chr2L:5238312-5238432 1.0000 120 chr2L:20950761-20950881 1.0000 120 chr3R:20542406-20542526 1.0000 120 chr2R:13429182-13429302 1.0000 120 chr3R:30413938-30414058 1.0000 120 chr2L:3444921-3445041 1.0000 120 chr2R:16095090-16095210 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Six4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Six4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.331 C 0.168 G 0.167 T 0.334 Background letter frequencies (from file dataset with add-one prior applied): A 0.331 C 0.168 G 0.167 T 0.334 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF KGSGTGKG MEME-1 width = 8 sites = 19 llr = 189 E-value = 9.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGSGTGKG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:::2::: pos.-specific C ::4:3::: probability G 6a6a:a4a matrix T 4:::6:6: bits 2.6 * * * * 2.3 * * * * 2.1 * * * * 1.8 * * * * Relative 1.5 *** * * Entropy 1.3 *** * * (14.3 bits) 1.0 **** *** 0.8 **** *** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGGTGTG consensus T C C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGSGTGKG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:20796858-20796978 12 1.21e-06 CCGAGGGGCA GGGGTGGG TCACCATGCC chr2R:20836049-20836169 20 1.21e-06 TCTAATTCCC GGGGTGGG AGAGCAGTAA chr2R:20836268-20836388 80 4.24e-06 TTAGCTACAC GGGGTGTG TTATCAACAT chr2L:1428497-1428617 108 5.46e-06 TATCCCCTGT GGGGCGTG CCCAT chrX:1517639-1517759 8 5.46e-06 AGAGATG GGGGCGTG CACATTTGTT chr3L:1151898-1152018 65 5.46e-06 CTGCCGTTTG GGGGCGTG GCAGGCCGCA chr2R:13502417-13502537 97 6.67e-06 GGCAATCTAG GGCGTGGG TGCTTGCTGT chr2R:23176742-23176862 24 1.09e-05 TATGGAGATG GGCGCGTG ACACGAAGTG chr3R:16771766-16771886 27 1.94e-05 TTTCAAAACT TGGGTGTG TAATTAGTTG chr3R:6791444-6791564 84 1.94e-05 CAACTCAAAA TGGGTGTG ACCAAAGATC chr2R:7433157-7433277 67 2.31e-05 CGAATGCCCC GGGGAGGG CATGCCATCT chr2R:16095090-16095210 104 2.79e-05 AAAATATTTT TGCGTGGG GCCGATGTC chr3L:14131816-14131936 4 2.79e-05 TGT TGCGTGGG AGTGCGAGCG chrX:10601767-10601887 28 2.79e-05 TATCGCATTA GGGGAGTG TTCCCAATTC chr2R:7429351-7429471 111 3.40e-05 CCACAAAATG TGCGTGTG TT chr3L:12668117-12668237 97 3.40e-05 GCAGTGCATG TGCGTGTG TGTTGGTTTG chr3L:18349501-18349621 110 3.76e-05 CGAGTTTAAT TGCGCGTG GCG chr3R:26010629-26010749 94 3.76e-05 GCTCTTTGAG GGCGAGGG TCTGCGTACT chr3R:5636890-5637010 20 6.29e-05 TACAGGAGAA AGGGTGTG CTTGGTTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGSGTGKG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20796858-20796978 1.2e-06 11_[+1]_101 chr2R:20836049-20836169 1.2e-06 19_[+1]_93 chr2R:20836268-20836388 4.2e-06 79_[+1]_33 chr2L:1428497-1428617 5.5e-06 107_[+1]_5 chrX:1517639-1517759 5.5e-06 7_[+1]_105 chr3L:1151898-1152018 5.5e-06 64_[+1]_48 chr2R:13502417-13502537 6.7e-06 96_[+1]_16 chr2R:23176742-23176862 1.1e-05 23_[+1]_89 chr3R:16771766-16771886 1.9e-05 26_[+1]_86 chr3R:6791444-6791564 1.9e-05 83_[+1]_29 chr2R:7433157-7433277 2.3e-05 66_[+1]_46 chr2R:16095090-16095210 2.8e-05 103_[+1]_9 chr3L:14131816-14131936 2.8e-05 3_[+1]_109 chrX:10601767-10601887 2.8e-05 27_[+1]_85 chr2R:7429351-7429471 3.4e-05 110_[+1]_2 chr3L:12668117-12668237 3.4e-05 96_[+1]_16 chr3L:18349501-18349621 3.8e-05 109_[+1]_3 chr3R:26010629-26010749 3.8e-05 93_[+1]_19 chr3R:5636890-5637010 6.3e-05 19_[+1]_93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGSGTGKG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGSGTGKG width=8 seqs=19 chr3L:20796858-20796978 ( 12) GGGGTGGG 1 chr2R:20836049-20836169 ( 20) GGGGTGGG 1 chr2R:20836268-20836388 ( 80) GGGGTGTG 1 chr2L:1428497-1428617 ( 108) GGGGCGTG 1 chrX:1517639-1517759 ( 8) GGGGCGTG 1 chr3L:1151898-1152018 ( 65) GGGGCGTG 1 chr2R:13502417-13502537 ( 97) GGCGTGGG 1 chr2R:23176742-23176862 ( 24) GGCGCGTG 1 chr3R:16771766-16771886 ( 27) TGGGTGTG 1 chr3R:6791444-6791564 ( 84) TGGGTGTG 1 chr2R:7433157-7433277 ( 67) GGGGAGGG 1 chr2R:16095090-16095210 ( 104) TGCGTGGG 1 chr3L:14131816-14131936 ( 4) TGCGTGGG 1 chrX:10601767-10601887 ( 28) GGGGAGTG 1 chr2R:7429351-7429471 ( 111) TGCGTGTG 1 chr3L:12668117-12668237 ( 97) TGCGTGTG 1 chr3L:18349501-18349621 ( 110) TGCGCGTG 1 chr3R:26010629-26010749 ( 94) GGCGAGGG 1 chr3R:5636890-5637010 ( 20) AGGGTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGSGTGKG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9783 E= 9.2e-001 -265 -1089 179 14 -1089 -1089 258 -1089 -1089 133 179 -1089 -1089 -1089 258 -1089 -107 65 -1089 79 -1089 -1089 258 -1089 -1089 -1089 114 92 -1089 -1089 258 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGSGTGKG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 9.2e-001 0.052632 0.000000 0.578947 0.368421 0.000000 0.000000 1.000000 0.000000 0.000000 0.421053 0.578947 0.000000 0.000000 0.000000 1.000000 0.000000 0.157895 0.263158 0.000000 0.578947 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.368421 0.631579 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGSGTGKG MEME-1 regular expression -------------------------------------------------------------------------------- [GT]G[GC]G[TC]G[TG]G -------------------------------------------------------------------------------- Time 7.50 secs. ******************************************************************************** ******************************************************************************** MOTIF YGCWGCKG MEME-2 width = 8 sites = 19 llr = 188 E-value = 1.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGCWGCKG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::5:::: pos.-specific C 4:82:a1: probability G :a2:a:4a matrix T 6::4::5: bits 2.6 * ** * 2.3 * ** * 2.1 ** ** * 1.8 ** ** * Relative 1.5 ** ** * Entropy 1.3 ** ** * (14.2 bits) 1.0 *** ** * 0.8 *** **** 0.5 *** **** 0.3 ******** 0.0 -------- Multilevel TGCAGCTG consensus C T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCWGCKG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21323939-21324059 76 1.22e-06 ATGGATATTA CGCAGCGG TAAAATTATT chr2R:14915058-14915178 9 3.65e-06 TAAATCAA TGCAGCGG GCACACAGAG chr2L:5245722-5245842 3 1.46e-05 AT TGCAGCTG GGCCTCATTT chr2L:10856806-10856926 107 1.46e-05 CTCCCGTTTC TGCAGCTG CAGCTC chr3L:5925970-5926090 102 1.46e-05 ATCTTTTAGG TGCAGCTG CATATTCAAA chrX:11341088-11341208 68 1.46e-05 GAACTTATGA TGCAGCTG TTTCCCAAAA chrX:17738012-17738132 44 1.52e-05 TGTTCTTTTT CGCCGCGG TAGCTATCAT chr3R:27937933-27938053 112 1.52e-05 AAATCATAAG CGCCGCGG G chrX:11109215-11109335 2 1.89e-05 T CGCTGCTG CAACGAATTA chr2R:22886151-22886271 78 1.89e-05 GTACAGTCAA CGCTGCTG ATAGTGTTGC chr3L:3288548-3288668 97 1.89e-05 GTGTAGATGG CGCTGCTG AGTTCTTCAG chr3L:8395817-8395937 62 2.38e-05 GGCCTGCTGG TGCTGCTG TTGCGCGTTA chr2L:19452509-19452629 109 2.38e-05 GTGATGCCAA TGCTGCTG ATGC chr2L:14497833-14497953 45 2.38e-05 GTGACATTGT TGCTGCTG TTAGCCTGCT chr3L:9505351-9505471 27 3.49e-05 AGCGCAACAG TGCTGCCG ACATTTATTT chrX:16967555-16967675 9 3.67e-05 GATGATAT CGGAGCGG TCTAGTGTGC chrX:12466600-12466720 60 4.04e-05 AATGACAAGT TGGAGCGG AAACAATTAA chr3L:20471029-20471149 39 4.04e-05 ATCATCATCA TGCCGCCG GTGGCCTGCA chrX:3136858-3136978 42 4.04e-05 TATTTGCATA TGGAGCGG TCGTTGTCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCWGCKG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21323939-21324059 1.2e-06 75_[+2]_37 chr2R:14915058-14915178 3.6e-06 8_[+2]_104 chr2L:5245722-5245842 1.5e-05 2_[+2]_110 chr2L:10856806-10856926 1.5e-05 106_[+2]_6 chr3L:5925970-5926090 1.5e-05 101_[+2]_11 chrX:11341088-11341208 1.5e-05 67_[+2]_45 chrX:17738012-17738132 1.5e-05 43_[+2]_69 chr3R:27937933-27938053 1.5e-05 111_[+2]_1 chrX:11109215-11109335 1.9e-05 1_[+2]_111 chr2R:22886151-22886271 1.9e-05 77_[+2]_35 chr3L:3288548-3288668 1.9e-05 96_[+2]_16 chr3L:8395817-8395937 2.4e-05 61_[+2]_51 chr2L:19452509-19452629 2.4e-05 108_[+2]_4 chr2L:14497833-14497953 2.4e-05 44_[+2]_68 chr3L:9505351-9505471 3.5e-05 26_[+2]_86 chrX:16967555-16967675 3.7e-05 8_[+2]_104 chrX:12466600-12466720 4e-05 59_[+2]_53 chr3L:20471029-20471149 4e-05 38_[+2]_74 chrX:3136858-3136978 4e-05 41_[+2]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCWGCKG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGCWGCKG width=8 seqs=19 chr2R:21323939-21324059 ( 76) CGCAGCGG 1 chr2R:14915058-14915178 ( 9) TGCAGCGG 1 chr2L:5245722-5245842 ( 3) TGCAGCTG 1 chr2L:10856806-10856926 ( 107) TGCAGCTG 1 chr3L:5925970-5926090 ( 102) TGCAGCTG 1 chrX:11341088-11341208 ( 68) TGCAGCTG 1 chrX:17738012-17738132 ( 44) CGCCGCGG 1 chr3R:27937933-27938053 ( 112) CGCCGCGG 1 chrX:11109215-11109335 ( 2) CGCTGCTG 1 chr2R:22886151-22886271 ( 78) CGCTGCTG 1 chr3L:3288548-3288668 ( 97) CGCTGCTG 1 chr3L:8395817-8395937 ( 62) TGCTGCTG 1 chr2L:19452509-19452629 ( 109) TGCTGCTG 1 chr2L:14497833-14497953 ( 45) TGCTGCTG 1 chr3L:9505351-9505471 ( 27) TGCTGCCG 1 chrX:16967555-16967675 ( 9) CGGAGCGG 1 chrX:12466600-12466720 ( 60) TGGAGCGG 1 chr3L:20471029-20471149 ( 39) TGCCGCCG 1 chrX:3136858-3136978 ( 42) TGGAGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCWGCKG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 1.7e+000 -1089 113 -1089 92 -1089 -1089 258 -1089 -1089 233 -8 -1089 52 -9 -1089 14 -1089 -1089 258 -1089 -1089 257 -1089 -1089 -1089 -67 114 66 -1089 -1089 258 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCWGCKG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 1.7e+000 0.000000 0.368421 0.000000 0.631579 0.000000 0.000000 1.000000 0.000000 0.000000 0.842105 0.157895 0.000000 0.473684 0.157895 0.000000 0.368421 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.105263 0.368421 0.526316 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCWGCKG MEME-2 regular expression -------------------------------------------------------------------------------- [TC]GC[AT]GC[TG]G -------------------------------------------------------------------------------- Time 13.79 secs. ******************************************************************************** ******************************************************************************** MOTIF MAGTGCAY MEME-3 width = 8 sites = 21 llr = 198 E-value = 5.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAGTGCAY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3a::::8: pos.-specific C 5::::a:6 probability G 2:a:a::: matrix T :::a::24 bits 2.6 * ** 2.3 * ** 2.1 * ** 1.8 * ** Relative 1.5 ***** Entropy 1.3 ***** * (13.6 bits) 1.0 ***** * 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGTGCAC consensus A TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGTGCAY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16095090-16095210 66 4.84e-06 ACTTTTCTCG CAGTGCAC TGAGTTGCGG chr2L:3598645-3598765 91 4.84e-06 TTTTTTCGCG CAGTGCAC AATCCCGCCC chr2L:20890030-20890150 89 4.84e-06 CATTTTCTTT CAGTGCAC CGATTCACCC chr3L:8029466-8029586 34 4.84e-06 CGACTAGTTA CAGTGCAC CCTCAATTTA chrX:12454528-12454648 47 1.93e-05 ATGGCAAAGA CAGTGCAT TTTATTTAAT chr3L:5987834-5987954 66 1.93e-05 ATGTCTTTTT CAGTGCAT TGCGGTCGCG chr3L:12668117-12668237 88 1.93e-05 TTATTTCTCG CAGTGCAT GTGCGTGTGT chr3L:1151898-1152018 26 1.93e-05 ATTTTTTTTT GAGTGCAC CAAGCGATTT chr2R:11738633-11738753 9 2.88e-05 GGCAGGCC AAGTGCAC TGAAAGAAAA chr3L:18223526-18223646 19 2.88e-05 AGGAAATTAT AAGTGCAC TGGCCAAAAA chr3L:14172698-14172818 69 2.88e-05 TCTTTAGAAT AAGTGCAC GTATAAATAT chr2R:21178707-21178827 9 2.88e-05 CAAGGATA AAGTGCAC GTTTGAGGGC chr3R:10626209-10626329 57 2.88e-05 TGGTGTTTCA AAGTGCAC TGAATCTGGT chr3L:3855368-3855488 95 4.33e-05 TTTTTTTTTT GAGTGCAT TGAAGTCACT chr3L:13189391-13189511 21 6.22e-05 AGTATATTAA AAGTGCAT CCTATTTAAA chr2R:23180947-23181067 37 6.22e-05 TAGTGCCTCA AAGTGCAT TTGCCTTTGT chr2R:17469491-17469611 56 7.68e-05 TCTGATTATT CAGTGCTT ACTGTACTAA chrX:19352955-19353075 90 7.68e-05 CGTTTTGTTT CAGTGCTT TGTTGCTGTT chrX:19843109-19843229 90 7.68e-05 ATTATTTTTC GAGTGCTC CGAGAACAAG chr3L:18349501-18349621 57 7.68e-05 TGTCAATGAA GAGTGCTC GACATTAGAG chr2L:21149180-21149300 106 7.68e-05 ataaaaatag cagtgctt gggacct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGTGCAY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16095090-16095210 4.8e-06 65_[+3]_47 chr2L:3598645-3598765 4.8e-06 90_[+3]_22 chr2L:20890030-20890150 4.8e-06 88_[+3]_24 chr3L:8029466-8029586 4.8e-06 33_[+3]_79 chrX:12454528-12454648 1.9e-05 46_[+3]_66 chr3L:5987834-5987954 1.9e-05 65_[+3]_47 chr3L:12668117-12668237 1.9e-05 87_[+3]_25 chr3L:1151898-1152018 1.9e-05 25_[+3]_87 chr2R:11738633-11738753 2.9e-05 8_[+3]_104 chr3L:18223526-18223646 2.9e-05 18_[+3]_94 chr3L:14172698-14172818 2.9e-05 68_[+3]_44 chr2R:21178707-21178827 2.9e-05 8_[+3]_104 chr3R:10626209-10626329 2.9e-05 56_[+3]_56 chr3L:3855368-3855488 4.3e-05 94_[+3]_18 chr3L:13189391-13189511 6.2e-05 20_[+3]_92 chr2R:23180947-23181067 6.2e-05 36_[+3]_76 chr2R:17469491-17469611 7.7e-05 55_[+3]_57 chrX:19352955-19353075 7.7e-05 89_[+3]_23 chrX:19843109-19843229 7.7e-05 89_[+3]_23 chr3L:18349501-18349621 7.7e-05 56_[+3]_56 chr2L:21149180-21149300 7.7e-05 105_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGTGCAY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAGTGCAY width=8 seqs=21 chr2R:16095090-16095210 ( 66) CAGTGCAC 1 chr2L:3598645-3598765 ( 91) CAGTGCAC 1 chr2L:20890030-20890150 ( 89) CAGTGCAC 1 chr3L:8029466-8029586 ( 34) CAGTGCAC 1 chrX:12454528-12454648 ( 47) CAGTGCAT 1 chr3L:5987834-5987954 ( 66) CAGTGCAT 1 chr3L:12668117-12668237 ( 88) CAGTGCAT 1 chr3L:1151898-1152018 ( 26) GAGTGCAC 1 chr2R:11738633-11738753 ( 9) AAGTGCAC 1 chr3L:18223526-18223646 ( 19) AAGTGCAC 1 chr3L:14172698-14172818 ( 69) AAGTGCAC 1 chr2R:21178707-21178827 ( 9) AAGTGCAC 1 chr3R:10626209-10626329 ( 57) AAGTGCAC 1 chr3L:3855368-3855488 ( 95) GAGTGCAT 1 chr3L:13189391-13189511 ( 21) AAGTGCAT 1 chr2R:23180947-23181067 ( 37) AAGTGCAT 1 chr2R:17469491-17469611 ( 56) CAGTGCTT 1 chrX:19352955-19353075 ( 90) CAGTGCTT 1 chrX:19843109-19843229 ( 90) GAGTGCTC 1 chr3L:18349501-18349621 ( 57) GAGTGCTC 1 chr2L:21149180-21149300 ( 106) CAGTGCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGTGCAY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6976 E= 5.9e+002 1 150 19 -1104 159 -1104 -1104 -1104 -1104 -1104 258 -1104 -1104 -1104 -1104 158 -1104 -1104 258 -1104 -1104 257 -1104 -1104 120 -1104 -1104 -49 -1104 177 -1104 36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGTGCAY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 5.9e+002 0.333333 0.476190 0.190476 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.761905 0.000000 0.000000 0.238095 0.000000 0.571429 0.000000 0.428571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGTGCAY MEME-3 regular expression -------------------------------------------------------------------------------- [CA]AGTGC[AT][CT] -------------------------------------------------------------------------------- Time 20.02 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTKCCTC MEME-4 width = 8 sites = 8 llr = 93 E-value = 9.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTKCCTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:1aa:a probability G a::5:::: matrix T ::a4::a: bits 2.6 ** ** * 2.3 ** ** * 2.1 ** ** * 1.8 ** ** * Relative 1.5 *** **** Entropy 1.3 *** **** (16.8 bits) 1.0 *** **** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCTGCCTC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTKCCTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:23176742-23176862 52 2.48e-06 CCTGCCGCTC GCTGCCTC AATTTCCAAG chr2R:9006883-9007003 55 2.48e-06 GCTAATGTTT GCTGCCTC TGTTTCTTAT chr3L:8395817-8395937 102 2.48e-06 CATGTTGCCG GCTGCCTC ATGTTGTTCT chr3L:20792959-20793079 13 2.48e-06 ATTTTGTTCC GCTGCCTC GAAACTGAGG chr2R:7433157-7433277 86 7.44e-06 ATGCCATCTC GCTTCCTC ATCTCGCATG chr2L:14497833-14497953 80 7.44e-06 AATATTTATG GCTTCCTC GTGTCATTTT chr3L:14192717-14192837 59 7.44e-06 AGGGGCAGCT GCTTCCTC TGCGGATTGC chr2R:13621345-13621465 48 9.93e-06 CGAGTCCCTC GCTCCCTC TCGCTCGCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTKCCTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23176742-23176862 2.5e-06 51_[+4]_61 chr2R:9006883-9007003 2.5e-06 54_[+4]_58 chr3L:8395817-8395937 2.5e-06 101_[+4]_11 chr3L:20792959-20793079 2.5e-06 12_[+4]_100 chr2R:7433157-7433277 7.4e-06 85_[+4]_27 chr2L:14497833-14497953 7.4e-06 79_[+4]_33 chr3L:14192717-14192837 7.4e-06 58_[+4]_54 chr2R:13621345-13621465 9.9e-06 47_[+4]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTKCCTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTKCCTC width=8 seqs=8 chr2R:23176742-23176862 ( 52) GCTGCCTC 1 chr2R:9006883-9007003 ( 55) GCTGCCTC 1 chr3L:8395817-8395937 ( 102) GCTGCCTC 1 chr3L:20792959-20793079 ( 13) GCTGCCTC 1 chr2R:7433157-7433277 ( 86) GCTTCCTC 1 chr2L:14497833-14497953 ( 80) GCTTCCTC 1 chr3L:14192717-14192837 ( 59) GCTTCCTC 1 chr2R:13621345-13621465 ( 48) GCTCCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTKCCTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 9.2e+002 -965 -965 258 -965 -965 257 -965 -965 -965 -965 -965 158 -965 -43 158 17 -965 257 -965 -965 -965 257 -965 -965 -965 -965 -965 158 -965 257 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTKCCTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 9.2e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.125000 0.500000 0.375000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTKCCTC MEME-4 regular expression -------------------------------------------------------------------------------- GCT[GT]CCTC -------------------------------------------------------------------------------- Time 26.22 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGCAGC MEME-5 width = 8 sites = 2 llr = 27 E-value = 6.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGCAGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C ::::a::a probability G aaaa::a: matrix T :::::::: bits 2.6 ***** ** 2.3 ***** ** 2.1 ***** ** 1.8 ***** ** Relative 1.5 ******** Entropy 1.3 ******** (19.7 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGGCAGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3068407-3068527 65 1.21e-06 AACAAAGAAA GGGGCAGC CATGTTAAGC chr3L:14192717-14192837 50 1.21e-06 AAAATCTGTA GGGGCAGC TGCTTCCTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3068407-3068527 1.2e-06 64_[+5]_48 chr3L:14192717-14192837 1.2e-06 49_[+5]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGCAGC width=8 seqs=2 chrX:3068407-3068527 ( 65) GGGGCAGC 1 chr3L:14192717-14192837 ( 50) GGGGCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 6.2e+003 -765 -765 258 -765 -765 -765 258 -765 -765 -765 258 -765 -765 -765 258 -765 -765 257 -765 -765 159 -765 -765 -765 -765 -765 258 -765 -765 257 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.2e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAGC MEME-5 regular expression -------------------------------------------------------------------------------- GGGGCAGC -------------------------------------------------------------------------------- Time 32.41 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2182327-2182447 2.81e-01 120 chr3L:14964340-14964460 1.13e-01 120 chr3R:15587630-15587750 2.38e-01 120 chr3R:10626209-10626329 6.13e-02 56_[+3(2.88e-05)]_56 chr3L:15320321-15320441 9.99e-01 120 chr2L:19219823-19219943 9.61e-01 120 chr2R:20836049-20836169 2.24e-04 19_[+1(1.21e-06)]_93 chr3L:7634859-7634979 8.25e-01 120 chr3L:3288548-3288668 1.54e-03 96_[+2(1.89e-05)]_16 chr3R:24753673-24753793 1.00e+00 120 chr3R:12985906-12986026 4.30e-01 120 chr3L:2865419-2865539 7.11e-02 120 chr3L:20796858-20796978 2.14e-04 11_[+1(1.21e-06)]_101 chr3R:5636890-5637010 4.99e-02 19_[+1(6.29e-05)]_93 chr2L:8552573-8552693 3.11e-01 120 chr3L:3852028-3852148 8.62e-01 120 chrX:8295494-8295614 7.26e-01 120 chr3R:26010629-26010749 1.65e-03 93_[+1(3.76e-05)]_19 chr3L:14192717-14192837 1.04e-06 49_[+5(1.21e-06)]_1_[+4(7.44e-06)]_\ 54 chr3L:11309872-11309992 9.90e-01 120 chr2L:3852218-3852338 6.47e-01 120 chr2L:21096542-21096662 8.72e-01 120 chr2L:19517466-19517586 2.51e-01 120 chrX:3136858-3136978 2.46e-02 41_[+2(4.04e-05)]_71 chr3R:19014874-19014994 9.05e-01 120 chr2L:21149180-21149300 1.53e-02 105_[+3(7.68e-05)]_7 chrX:2155930-2156050 3.07e-03 68_[+4(8.62e-05)]_44 chr2R:21091933-21092053 5.75e-01 120 chr3L:12037907-12038027 8.06e-01 120 chr3L:4614065-4614185 1.60e-01 14_[+1(8.57e-05)]_75_[+1(8.33e-05)]_\ 15 chr3R:25174315-25174435 9.31e-01 120 chr3R:21420038-21420158 1.61e-01 120 chr2R:22886151-22886271 6.11e-03 56_[+4(8.62e-05)]_13_[+2(1.89e-05)]_\ 35 chr2R:21869762-21869882 7.43e-02 120 chr3L:8629044-8629164 1.94e-01 120 chr2L:14497833-14497953 1.84e-04 44_[+2(2.38e-05)]_27_[+4(7.44e-06)]_\ 33 chr3R:23293503-23293623 4.14e-01 120 chr3L:11408925-11409045 6.88e-01 120 chr3L:18349501-18349621 3.88e-03 56_[+3(7.68e-05)]_45_[+1(3.76e-05)]_\ 3 chrX:11341088-11341208 1.01e-02 67_[+2(1.46e-05)]_45 chr3L:8029466-8029586 2.63e-04 33_[+3(4.84e-06)]_79 chr3L:20471029-20471149 5.42e-03 38_[+2(4.04e-05)]_74 chrX:19843109-19843229 1.28e-01 89_[+3(7.68e-05)]_23 chr2R:22661302-22661422 6.30e-01 120 chr3R:10580759-10580879 6.27e-02 120 chr2L:3819098-3819218 4.58e-01 120 chr2R:13621345-13621465 5.53e-03 47_[+4(9.93e-06)]_65 chr2R:21323939-21324059 2.80e-02 75_[+2(1.22e-06)]_37 chr2L:11091194-11091314 3.47e-01 120 chr2R:7433157-7433277 2.36e-05 43_[+4(8.62e-05)]_15_[+1(2.31e-05)]_\ 11_[+4(7.44e-06)]_27 chr2L:7492040-7492160 9.33e-01 120 chr3R:29089765-29089885 3.30e-01 120 chr3L:18872605-18872725 1.00e+00 120 chr2R:21527404-21527524 2.35e-01 120 chr2R:17533822-17533942 5.99e-01 120 chr2R:19265133-19265253 3.05e-01 120 chr3L:21821803-21821923 6.90e-01 120 chr3L:159586-159706 7.41e-03 120 chr2R:22384525-22384645 5.56e-01 120 chrX:11109215-11109335 1.77e-02 1_[+2(1.89e-05)]_111 chr3L:8423158-8423278 9.81e-01 120 chr2R:21525305-21525425 1.29e-02 120 chr2R:16091973-16092093 6.78e-01 120 chrX:12242503-12242623 8.78e-01 120 chr3L:11486013-11486133 3.66e-01 120 chrX:7617075-7617195 6.60e-01 120 chr2L:6357109-6357229 3.63e-02 120 chr2R:21178707-21178827 1.90e-01 8_[+3(2.88e-05)]_104 chrX:3455580-3455700 9.24e-01 120 chrX:3357995-3358115 4.51e-01 120 chr3L:14172698-14172818 1.25e-01 68_[+3(2.88e-05)]_44 chr3L:19845110-19845230 7.92e-01 120 chr3L:1151898-1152018 1.75e-04 25_[+3(1.93e-05)]_31_[+1(5.46e-06)]_\ 48 chr2L:1214579-1214699 1.10e-01 120 chr2L:1926014-1926134 9.91e-01 120 chr2L:19452509-19452629 8.04e-03 108_[+2(2.38e-05)]_4 chrX:10825465-10825585 4.36e-01 120 chr3L:15321009-15321129 9.11e-02 120 chrX:14622337-14622457 8.75e-01 120 chr3L:12668117-12668237 1.86e-03 87_[+3(1.93e-05)]_1_[+1(3.40e-05)]_\ 16 chr2L:7957140-7957260 9.96e-01 120 chr3L:1578641-1578761 6.36e-02 120 chr4:1218922-1219042 2.98e-01 120 chrX:7968389-7968509 6.02e-01 120 chrX:5968189-5968309 1.03e-01 120 chr3L:8544820-8544940 7.45e-01 120 chr3L:15532794-15532914 1.00e+00 120 chr2R:14915058-14915178 1.00e-02 8_[+2(3.65e-06)]_104 chrX:10601767-10601887 2.93e-02 27_[+1(2.79e-05)]_85 chrX:16655854-16655974 3.10e-01 120 chr3L:20792959-20793079 9.00e-05 12_[+4(2.48e-06)]_37_[+5(4.59e-05)]_\ 55 chr3L:14999646-14999766 4.94e-01 120 chrX:19352955-19353075 4.83e-02 89_[+3(7.68e-05)]_23 chr3L:5630187-5630307 9.05e-01 120 chr3R:31134161-31134281 1.42e-01 120 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