******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Sin3A.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:14603695-14603815 1.0000 120 chr3L:16787152-16787272 1.0000 120 chrX:2170578-2170698 1.0000 120 chrX:14603902-14604022 1.0000 120 chrX:15746908-15747028 1.0000 120 chrX:17709680-17709800 1.0000 120 chr3R:29933031-29933151 1.0000 120 chr2R:14771633-14771753 1.0000 120 chr3L:10631314-10631434 1.0000 120 chrX:3936298-3936418 1.0000 120 chr2R:14152826-14152946 1.0000 120 chr2L:13835063-13835183 1.0000 120 chr3L:4626932-4627052 1.0000 120 chr2L:2151947-2152067 1.0000 120 chr2R:14153029-14153149 1.0000 120 chr3L:16860983-16861103 1.0000 120 chr3R:29933233-29933353 1.0000 120 chr3L:7915344-7915464 1.0000 120 chr3L:16112566-16112686 1.0000 120 chrX:22482295-22482415 1.0000 120 chr2R:23402141-23402261 1.0000 120 chrX:21053662-21053782 1.0000 120 chr2R:7812014-7812134 1.0000 120 chr2L:6920024-6920144 1.0000 120 chrX:18379870-18379990 1.0000 120 chr3R:5660618-5660738 1.0000 120 chrX:12017892-12018012 1.0000 120 chr2R:17572999-17573119 1.0000 120 chr2R:21624765-21624885 1.0000 120 chr3L:21441516-21441636 1.0000 120 chr3L:5779925-5780045 1.0000 120 chr2L:9613056-9613176 1.0000 120 chrX:3949064-3949184 1.0000 120 chr2R:13205336-13205456 1.0000 120 chr2L:16825110-16825230 1.0000 120 chr3L:5779632-5779752 1.0000 120 chr3R:24230038-24230158 1.0000 120 chrX:9247275-9247395 1.0000 120 chr3L:16112352-16112472 1.0000 120 chrX:647244-647364 1.0000 120 chr3L:3047000-3047120 1.0000 120 chrX:11869085-11869205 1.0000 120 chr3R:12413996-12414116 1.0000 120 chrX:18136994-18137114 1.0000 120 chr3L:20788067-20788187 1.0000 120 chrX:11621683-11621803 1.0000 120 chr2R:17407269-17407389 1.0000 120 chrX:17302359-17302479 1.0000 120 chr3L:12336812-12336932 1.0000 120 chr3R:9015071-9015191 1.0000 120 chr3R:13958688-13958808 1.0000 120 chr3L:8178241-8178361 1.0000 120 chrX:10596013-10596133 1.0000 120 chr2R:20262867-20262987 1.0000 120 chr3L:9972269-9972389 1.0000 120 chr3R:15361582-15361702 1.0000 120 chrX:8251675-8251795 1.0000 120 chr2L:15005611-15005731 1.0000 120 chrX:625486-625606 1.0000 120 chrX:6533611-6533731 1.0000 120 chrX:17423461-17423581 1.0000 120 chr3R:27116663-27116783 1.0000 120 chr2L:11100653-11100773 1.0000 120 chr3L:4287234-4287354 1.0000 120 chr2L:5801942-5802062 1.0000 120 chr3L:20771676-20771796 1.0000 120 chr3R:9678185-9678305 1.0000 120 chr3L:16587166-16587286 1.0000 120 chrX:18657012-18657132 1.0000 120 chr2R:8952043-8952163 1.0000 120 chr2R:12636162-12636282 1.0000 120 chrX:16800899-16801019 1.0000 120 chr3R:25249513-25249633 1.0000 120 chrX:18884367-18884487 1.0000 120 chr3R:9754520-9754640 1.0000 120 chr2R:13168275-13168395 1.0000 120 chr3R:23924360-23924480 1.0000 120 chr3L:4135982-4136102 1.0000 120 chrX:13822723-13822843 1.0000 120 chr3L:21131565-21131685 1.0000 120 chr2L:12103907-12104027 1.0000 120 chr3L:19806032-19806152 1.0000 120 chrX:16599154-16599274 1.0000 120 chr2R:16196475-16196595 1.0000 120 chr2R:12430967-12431087 1.0000 120 chrX:927844-927964 1.0000 120 chr3L:212637-212757 1.0000 120 chr3R:10413166-10413286 1.0000 120 chrX:4104307-4104427 1.0000 120 chr3R:8122641-8122761 1.0000 120 chr3R:28340486-28340606 1.0000 120 chr3R:31395798-31395918 1.0000 120 chr2L:3159560-3159680 1.0000 120 chr3L:12145995-12146115 1.0000 120 chrX:4548732-4548852 1.0000 120 chr3R:5794596-5794716 1.0000 120 chr3R:23680304-23680424 1.0000 120 chr2R:19670736-19670856 1.0000 120 chrX:18385473-18385593 1.0000 120 chr2L:2045461-2045581 1.0000 120 chr3L:22287888-22288008 1.0000 120 chr3L:12417470-12417590 1.0000 120 chr3R:23996285-23996405 1.0000 120 chr3R:25983265-25983385 1.0000 120 chrX:23082473-23082593 1.0000 120 chr3R:15832559-15832679 1.0000 120 chr3L:3472256-3472376 1.0000 120 chrX:11125081-11125201 1.0000 120 chr3R:31463055-31463175 1.0000 120 chr2R:6742113-6742233 1.0000 120 chr2R:12066378-12066498 1.0000 120 chrX:5754955-5755075 1.0000 120 chr2L:6723932-6724052 1.0000 120 chrX:4548951-4549071 1.0000 120 chr2R:9846703-9846823 1.0000 120 chr2R:12572021-12572141 1.0000 120 chr3R:30005065-30005185 1.0000 120 chr3R:27273280-27273400 1.0000 120 chr2R:12184213-12184333 1.0000 120 chr2R:21720667-21720787 1.0000 120 chrX:18648103-18648223 1.0000 120 chr2L:18448738-18448858 1.0000 120 chr3L:16786936-16787056 1.0000 120 chrX:15710911-15711031 1.0000 120 chr3R:16647731-16647851 1.0000 120 chr2L:7885374-7885494 1.0000 120 chr2L:7426900-7427020 1.0000 120 chr3L:2780943-2781063 1.0000 120 chrX:9158428-9158548 1.0000 120 chr2R:12066166-12066286 1.0000 120 chr2R:12468794-12468914 1.0000 120 chr2R:18819803-18819923 1.0000 120 chr3R:12413788-12413908 1.0000 120 chr3L:12399175-12399295 1.0000 120 chrX:11347909-11348029 1.0000 120 chr3L:8633984-8634104 1.0000 120 chrX:11124731-11124851 1.0000 120 chr3R:30806948-30807068 1.0000 120 chr3R:8723146-8723266 1.0000 120 chr3L:4277928-4278048 1.0000 120 chrX:14583030-14583150 1.0000 120 chr2R:23396604-23396724 1.0000 120 chr3R:30180108-30180228 1.0000 120 chr2L:560274-560394 1.0000 120 chr3R:19645191-19645311 1.0000 120 chr3R:29319331-29319451 1.0000 120 chr3L:6756431-6756551 1.0000 120 chr3R:9756279-9756399 1.0000 120 chr2L:10517192-10517312 1.0000 120 chrX:2585728-2585848 1.0000 120 chr2R:16186730-16186850 1.0000 120 chrX:16942955-16943075 1.0000 120 chr2L:9252919-9253039 1.0000 120 chr3L:11109588-11109708 1.0000 120 chrX:6091277-6091397 1.0000 120 chr2R:24574422-24574542 1.0000 120 chrX:15761147-15761267 1.0000 120 chrX:8251875-8251995 1.0000 120 chr2R:7463111-7463231 1.0000 120 chr2L:19498190-19498310 1.0000 120 chrX:6533897-6534017 1.0000 120 chr2R:16047546-16047666 1.0000 120 chr2R:12423537-12423657 1.0000 120 chr2L:8071291-8071411 1.0000 120 chr2R:22127443-22127563 1.0000 120 chrX:16787657-16787777 1.0000 120 chr2L:10743831-10743951 1.0000 120 chr3R:24719542-24719662 1.0000 120 chr3L:8966778-8966898 1.0000 120 chr3L:3192663-3192783 1.0000 120 chr2R:6759094-6759214 1.0000 120 chr2R:12514801-12514921 1.0000 120 chr3R:22726265-22726385 1.0000 120 chr3L:18622438-18622558 1.0000 120 chr2L:15271821-15271941 1.0000 120 chr2R:21624419-21624539 1.0000 120 chr2R:9989308-9989428 1.0000 120 chrX:9148970-9149090 1.0000 120 chr3R:15328171-15328291 1.0000 120 chrX:805936-806056 1.0000 120 chr2R:12174975-12175095 1.0000 120 chr2R:17672370-17672490 1.0000 120 chr2R:18128310-18128430 1.0000 120 chr2R:10068600-10068720 1.0000 120 chr2L:18943903-18944023 1.0000 120 chr2L:10056898-10057018 1.0000 120 chr3R:23933807-23933927 1.0000 120 chr3R:20634967-20635087 1.0000 120 chrX:7969517-7969637 1.0000 120 chr3R:11231852-11231972 1.0000 120 chr3R:5219544-5219664 1.0000 120 chr2L:20065562-20065682 1.0000 120 chrX:19579944-19580064 1.0000 120 chr3R:12429476-12429596 1.0000 120 chrX:16655232-16655352 1.0000 120 chr2R:10124638-10124758 1.0000 120 chr3R:20057709-20057829 1.0000 120 chr3R:20622146-20622266 1.0000 120 chr2L:19041839-19041959 1.0000 120 chr3L:11169586-11169706 1.0000 120 chr3L:2782170-2782290 1.0000 120 chrX:9162069-9162189 1.0000 120 chr3R:15278239-15278359 1.0000 120 chr2L:15771151-15771271 1.0000 120 chr2L:19572380-19572500 1.0000 120 chrX:20251241-20251361 1.0000 120 chr2L:1704988-1705108 1.0000 120 chr2R:24098374-24098494 1.0000 120 chr3R:9412479-9412599 1.0000 120 chr2R:14618025-14618145 1.0000 120 chrX:13154941-13155061 1.0000 120 chr2R:17747993-17748113 1.0000 120 chr3L:20241591-20241711 1.0000 120 chr2R:21720468-21720588 1.0000 120 chrX:10010371-10010491 1.0000 120 chrX:3671542-3671662 1.0000 120 chr2L:20927680-20927800 1.0000 120 chrX:13722145-13722265 1.0000 120 chrX:16787449-16787569 1.0000 120 chr2R:22911847-22911967 1.0000 120 chrX:17423661-17423781 1.0000 120 chrX:9103937-9104057 1.0000 120 chrX:4113961-4114081 1.0000 120 chr2R:23544004-23544124 1.0000 120 chrX:19663918-19664038 1.0000 120 chr2L:3530333-3530453 1.0000 120 chrX:16783854-16783974 1.0000 120 chr3R:24148868-24148988 1.0000 120 chr2R:22415728-22415848 1.0000 120 chr2R:9891855-9891975 1.0000 120 chr3R:28599327-28599447 1.0000 120 chr3R:17685038-17685158 1.0000 120 chr2R:9891650-9891770 1.0000 120 chrX:4551810-4551930 1.0000 120 chrX:10082465-10082585 1.0000 120 chr3R:6380240-6380360 1.0000 120 chr3R:13647995-13648115 1.0000 120 chr2L:5802143-5802263 1.0000 120 chr2L:16350883-16351003 1.0000 120 chr3R:8357179-8357299 1.0000 120 chr3R:22745545-22745665 1.0000 120 chrX:16803347-16803467 1.0000 120 chrX:17842075-17842195 1.0000 120 chr2R:22061174-22061294 1.0000 120 chr2L:8072827-8072947 1.0000 120 chr3R:6647074-6647194 1.0000 120 chr2L:8685920-8686040 1.0000 120 chr3R:24805166-24805286 1.0000 120 chrX:2604093-2604213 1.0000 120 chr3R:25678621-25678741 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Sin3A/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Sin3A.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.285 C 0.217 G 0.215 T 0.284 Background letter frequencies (from file dataset with add-one prior applied): A 0.285 C 0.217 G 0.215 T 0.284 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTATCGAT MEME-1 width = 8 sites = 69 llr = 539 E-value = 1.2e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTATCGAT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 22a:::a2 pos.-specific C 52::a::: probability G 1::::a:: matrix T 27:a:::8 bits 2.2 ** 2.0 ** 1.8 * ** 1.6 ***** Relative 1.3 ***** Entropy 1.1 ***** (11.3 bits) 0.9 ****** 0.7 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel CTATCGAT consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTATCGAT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9891855-9891975 68 1.88e-05 TAGTCGTTCG CTATCGAT AAATATTGTC chrX:13154941-13155061 60 1.88e-05 ACTGCCGGAA CTATCGAT AGCTTCTTTT chr3R:9412479-9412599 69 1.88e-05 ACTTGACAGC CTATCGAT TTTCGGGAAA chrX:19579944-19580064 55 1.88e-05 TTTTTGGTCT CTATCGAT AGTCTATCGA chr2L:18943903-18944023 94 1.88e-05 AGAAGCTAAA CTATCGAT ACGAGCGCGC chr2R:16047546-16047666 59 1.88e-05 TTTCACCAAA CTATCGAT AATTACTATC chrX:11124731-11124851 27 1.88e-05 GGTACTCGAA CTATCGAT AGTTGCGTCT chrX:5754955-5755075 67 1.88e-05 CTATCGAATA CTATCGAT TTACCGCCAA chr3L:12145995-12146115 112 1.88e-05 GTGTGACCAA CTATCGAT A chr3R:15361582-15361702 101 1.88e-05 TTGTCGGCAA CTATCGAT ATGGTTAATA chr2R:20262867-20262987 35 1.88e-05 TCGACTGAAT CTATCGAT AGCAGCCAGC chr3R:24230038-24230158 19 1.88e-05 GAACGCGATA CTATCGAT GACTTTCCCG chrX:12017892-12018012 63 1.88e-05 AGCTGTGAAA CTATCGAT GTTACAATCG chr2L:13835063-13835183 10 1.88e-05 AGCCGGTGC CTATCGAT ACCATCAGAG chr3R:22726265-22726385 1 3.32e-05 . CCATCGAT TCCTCGGATC chrX:11125081-11125201 97 3.32e-05 ATAAATGGCC CCATCGAT AGATCACAAT chrX:625486-625606 26 3.32e-05 GAGGAATTTA CCATCGAT TTCTTGAGCG chrX:647244-647364 13 3.32e-05 ACCATCGACG CCATCGAT GTTGGCATCG chr2L:15771151-15771271 35 5.79e-05 CACCTATCGC TTATCGAT ATTTCTAGCA chr2R:18128310-18128430 96 5.79e-05 TCGTGGTCTG TTATCGAT TCGATATCGA chr3R:24719542-24719662 78 5.79e-05 AGTTCTGTTC TTATCGAT ACGTTTGTGC chr3L:4135982-4136102 110 5.79e-05 TTTTTTACAT TTATCGAT TTC chr3R:23924360-23924480 7 5.79e-05 AATGAG TTATCGAT TACGGGCAGC chrX:10596013-10596133 34 5.79e-05 ATCAGTGGAG TTATCGAT AGCAGCCAAG chrX:22482295-22482415 65 5.79e-05 AAAAGTCCGG TTATCGAT ATCTGACGTC chr2L:1704988-1705108 91 9.57e-05 CAGTGTAAAA CTATCGAA ACAAGGGAAA chr3R:5219544-5219664 99 9.57e-05 ATCGGCGGGC CTATCGAA CAATTCCTGC chr2L:10517192-10517312 107 9.57e-05 CCACCACTAA CTATCGAA TGGCTG chr2L:560274-560394 107 9.57e-05 GCTTTCCGAC CTATCGAA CCAGGG chr3R:16647731-16647851 40 9.57e-05 GCTCAATATC CTATCGAA CCTTCTCGAA chrX:18884367-18884487 93 9.57e-05 TGCAGACCGC CAATCGAT TGTTTACGTA chr3R:27116663-27116783 46 9.57e-05 ATAGCCTACC CAATCGAT AGTAGCCGCT chr3R:17685038-17685158 67 1.20e-04 CAAACTTGGT ATATCGAT AGTTGTCGCC chrX:16783854-16783974 5 1.20e-04 AGCA ATATCGAT AGCGCTGCCA chrX:20251241-20251361 101 1.20e-04 TATCGAACAG ATATCGAT TCATGTTCCA chr3R:20634967-20635087 61 1.20e-04 GATTTAAATA ATATCGAT ATTACTGTTG chrX:15761147-15761267 97 1.20e-04 AATATCGCTG ATATCGAT ACTGTGGCCG chr2L:7885374-7885494 60 1.20e-04 ATAGGCAGAA ATATCGAT GGCACAGCAC chr2L:16825110-16825230 111 1.20e-04 CGAGTTTTCG ATATCGAT TG chr3R:5660618-5660738 21 1.20e-04 CTGCTGTTAT ATATCGAT AACATTGCAA chrX:14583030-14583150 2 1.39e-04 G GTATCGAT GCAGACCAGA chrX:16599154-16599274 42 1.39e-04 TGCAGGCAAC GTATCGAT TAGCACACGC chrX:16803347-16803467 15 1.58e-04 TTTCGAGGAA TCATCGAT TATTTTCTTT chrX:927844-927964 94 1.72e-04 TTTAAAGACG CCATCGAA CGTAGGATAT chr3R:6380240-6380360 23 2.41e-04 TAAAAAGAGG TAATCGAT AACCGTGACT chr3R:24148868-24148988 42 2.41e-04 ATTATTTTTA TTATCGAA TGCAAAATAA chr2L:19041839-19041959 20 2.41e-04 ATTTACACGC TAATCGAT AACAACGTAG chr2R:21624419-21624539 25 2.41e-04 ACCGCGTATG TAATCGAT CCGGCAATGC chr3R:8122641-8122761 38 2.41e-04 TGCTCAAATT TAATCGAT AATCTTCCCT chr3L:19806032-19806152 25 2.41e-04 TTTATCATCC ACATCGAT TGTCCATAAT chr3L:10631314-10631434 13 2.41e-04 TGACTGAAAT TTATCGAA TTCCGTCGAT chrX:17842075-17842195 59 2.74e-04 CTAGACGTCT GCATCGAT AGTATCGCAT chr3L:8966778-8966898 3 2.74e-04 CC CAATCGAA GTCGAAGAAG chrX:2585728-2585848 42 2.74e-04 ATGCAATTTG GCATCGAT GTGCCCGATG chr3L:12417470-12417590 94 2.74e-04 ACTCACGACA GCATCGAT ATACCGAATA chr3L:21131565-21131685 101 2.74e-04 GTGACGATTG CAATCGAA AGGCGATAAG chrX:2604093-2604213 104 3.52e-04 CCGCACATAT CTATCGCT TTTTTGAAC chrX:3671542-3671662 56 3.52e-04 AAGCGTTTAT ATATCGAA ATATATTCAA chr3R:30180108-30180228 110 3.52e-04 TGGTATTTTT CTACCGAT TTG chr2R:6742113-6742233 7 3.52e-04 GGACAA AAATCGAT CTGTGACGCG chr3L:20788067-20788187 78 3.52e-04 AGGGATGTCA CTATCGCT GCTGCCACAG chr2R:22061174-22061294 91 3.90e-04 CAGAACGTAA GTATCGAA AAAGCGCAGT chr2R:6759094-6759214 112 3.90e-04 TCCAATTGCT GAATCGAT C chrX:11869085-11869205 112 3.90e-04 ATAACGTCTG GTATCGAA A chr3R:9756279-9756399 111 4.04e-04 TGATTAAGCC CGATCGAT AT chr2R:14771633-14771753 38 4.37e-04 GTATGGCGGG CTATCGAC CCTTGGGTCG chrX:13822723-13822843 71 5.03e-04 AAAAAGAATA CCACCGAT TGCAAACATT chrX:6533897-6534017 41 6.38e-04 AACCCTGAAA CTACCGAA TCCAACTGGT chr3R:25983265-25983385 96 6.38e-04 AAGTGTTTTC CAATCGCT TTTCCGCAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTATCGAT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9891855-9891975 1.9e-05 67_[+1]_45 chrX:13154941-13155061 1.9e-05 59_[+1]_53 chr3R:9412479-9412599 1.9e-05 68_[+1]_44 chrX:19579944-19580064 1.9e-05 54_[+1]_58 chr2L:18943903-18944023 1.9e-05 93_[+1]_19 chr2R:16047546-16047666 1.9e-05 58_[+1]_54 chrX:11124731-11124851 1.9e-05 26_[+1]_86 chrX:5754955-5755075 1.9e-05 66_[+1]_46 chr3L:12145995-12146115 1.9e-05 111_[+1]_1 chr3R:15361582-15361702 1.9e-05 100_[+1]_12 chr2R:20262867-20262987 1.9e-05 34_[+1]_78 chr3R:24230038-24230158 1.9e-05 18_[+1]_94 chrX:12017892-12018012 1.9e-05 62_[+1]_50 chr2L:13835063-13835183 1.9e-05 9_[+1]_103 chr3R:22726265-22726385 3.3e-05 [+1]_112 chrX:11125081-11125201 3.3e-05 96_[+1]_16 chrX:625486-625606 3.3e-05 25_[+1]_87 chrX:647244-647364 3.3e-05 12_[+1]_100 chr2L:15771151-15771271 5.8e-05 34_[+1]_78 chr2R:18128310-18128430 5.8e-05 95_[+1]_17 chr3R:24719542-24719662 5.8e-05 77_[+1]_35 chr3L:4135982-4136102 5.8e-05 109_[+1]_3 chr3R:23924360-23924480 5.8e-05 6_[+1]_106 chrX:10596013-10596133 5.8e-05 33_[+1]_79 chrX:22482295-22482415 5.8e-05 64_[+1]_48 chr2L:1704988-1705108 9.6e-05 90_[+1]_22 chr3R:5219544-5219664 9.6e-05 98_[+1]_14 chr2L:10517192-10517312 9.6e-05 106_[+1]_6 chr2L:560274-560394 9.6e-05 106_[+1]_6 chr3R:16647731-16647851 9.6e-05 39_[+1]_73 chrX:18884367-18884487 9.6e-05 92_[+1]_20 chr3R:27116663-27116783 9.6e-05 45_[+1]_67 chr3R:17685038-17685158 0.00012 66_[+1]_46 chrX:16783854-16783974 0.00012 4_[+1]_108 chrX:20251241-20251361 0.00012 100_[+1]_12 chr3R:20634967-20635087 0.00012 60_[+1]_52 chrX:15761147-15761267 0.00012 96_[+1]_16 chr2L:7885374-7885494 0.00012 59_[+1]_53 chr2L:16825110-16825230 0.00012 110_[+1]_2 chr3R:5660618-5660738 0.00012 20_[+1]_92 chrX:14583030-14583150 0.00014 1_[+1]_111 chrX:16599154-16599274 0.00014 41_[+1]_71 chrX:16803347-16803467 0.00016 14_[+1]_98 chrX:927844-927964 0.00017 93_[+1]_19 chr3R:6380240-6380360 0.00024 22_[+1]_90 chr3R:24148868-24148988 0.00024 41_[+1]_71 chr2L:19041839-19041959 0.00024 19_[+1]_93 chr2R:21624419-21624539 0.00024 24_[+1]_88 chr3R:8122641-8122761 0.00024 37_[+1]_75 chr3L:19806032-19806152 0.00024 24_[+1]_88 chr3L:10631314-10631434 0.00024 12_[+1]_100 chrX:17842075-17842195 0.00027 58_[+1]_54 chr3L:8966778-8966898 0.00027 2_[+1]_110 chrX:2585728-2585848 0.00027 41_[+1]_71 chr3L:12417470-12417590 0.00027 93_[+1]_19 chr3L:21131565-21131685 0.00027 100_[+1]_12 chrX:2604093-2604213 0.00035 103_[+1]_9 chrX:3671542-3671662 0.00035 55_[+1]_57 chr3R:30180108-30180228 0.00035 109_[+1]_3 chr2R:6742113-6742233 0.00035 6_[+1]_106 chr3L:20788067-20788187 0.00035 77_[+1]_35 chr2R:22061174-22061294 0.00039 90_[+1]_22 chr2R:6759094-6759214 0.00039 111_[+1]_1 chrX:11869085-11869205 0.00039 111_[+1]_1 chr3R:9756279-9756399 0.0004 110_[+1]_2 chr2R:14771633-14771753 0.00044 37_[+1]_75 chrX:13822723-13822843 0.0005 70_[+1]_42 chrX:6533897-6534017 0.00064 40_[+1]_72 chr3R:25983265-25983385 0.00064 95_[+1]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTATCGAT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTATCGAT width=8 seqs=69 chr2R:9891855-9891975 ( 68) CTATCGAT 1 chrX:13154941-13155061 ( 60) CTATCGAT 1 chr3R:9412479-9412599 ( 69) CTATCGAT 1 chrX:19579944-19580064 ( 55) CTATCGAT 1 chr2L:18943903-18944023 ( 94) CTATCGAT 1 chr2R:16047546-16047666 ( 59) CTATCGAT 1 chrX:11124731-11124851 ( 27) CTATCGAT 1 chrX:5754955-5755075 ( 67) CTATCGAT 1 chr3L:12145995-12146115 ( 112) CTATCGAT 1 chr3R:15361582-15361702 ( 101) CTATCGAT 1 chr2R:20262867-20262987 ( 35) CTATCGAT 1 chr3R:24230038-24230158 ( 19) CTATCGAT 1 chrX:12017892-12018012 ( 63) CTATCGAT 1 chr2L:13835063-13835183 ( 10) CTATCGAT 1 chr3R:22726265-22726385 ( 1) CCATCGAT 1 chrX:11125081-11125201 ( 97) CCATCGAT 1 chrX:625486-625606 ( 26) CCATCGAT 1 chrX:647244-647364 ( 13) CCATCGAT 1 chr2L:15771151-15771271 ( 35) TTATCGAT 1 chr2R:18128310-18128430 ( 96) TTATCGAT 1 chr3R:24719542-24719662 ( 78) TTATCGAT 1 chr3L:4135982-4136102 ( 110) TTATCGAT 1 chr3R:23924360-23924480 ( 7) TTATCGAT 1 chrX:10596013-10596133 ( 34) TTATCGAT 1 chrX:22482295-22482415 ( 65) TTATCGAT 1 chr2L:1704988-1705108 ( 91) CTATCGAA 1 chr3R:5219544-5219664 ( 99) CTATCGAA 1 chr2L:10517192-10517312 ( 107) CTATCGAA 1 chr2L:560274-560394 ( 107) CTATCGAA 1 chr3R:16647731-16647851 ( 40) CTATCGAA 1 chrX:18884367-18884487 ( 93) CAATCGAT 1 chr3R:27116663-27116783 ( 46) CAATCGAT 1 chr3R:17685038-17685158 ( 67) ATATCGAT 1 chrX:16783854-16783974 ( 5) ATATCGAT 1 chrX:20251241-20251361 ( 101) ATATCGAT 1 chr3R:20634967-20635087 ( 61) ATATCGAT 1 chrX:15761147-15761267 ( 97) ATATCGAT 1 chr2L:7885374-7885494 ( 60) ATATCGAT 1 chr2L:16825110-16825230 ( 111) ATATCGAT 1 chr3R:5660618-5660738 ( 21) ATATCGAT 1 chrX:14583030-14583150 ( 2) GTATCGAT 1 chrX:16599154-16599274 ( 42) GTATCGAT 1 chrX:16803347-16803467 ( 15) TCATCGAT 1 chrX:927844-927964 ( 94) CCATCGAA 1 chr3R:6380240-6380360 ( 23) TAATCGAT 1 chr3R:24148868-24148988 ( 42) TTATCGAA 1 chr2L:19041839-19041959 ( 20) TAATCGAT 1 chr2R:21624419-21624539 ( 25) TAATCGAT 1 chr3R:8122641-8122761 ( 38) TAATCGAT 1 chr3L:19806032-19806152 ( 25) ACATCGAT 1 chr3L:10631314-10631434 ( 13) TTATCGAA 1 chrX:17842075-17842195 ( 59) GCATCGAT 1 chr3L:8966778-8966898 ( 3) CAATCGAA 1 chrX:2585728-2585848 ( 42) GCATCGAT 1 chr3L:12417470-12417590 ( 94) GCATCGAT 1 chr3L:21131565-21131685 ( 101) CAATCGAA 1 chrX:2604093-2604213 ( 104) CTATCGCT 1 chrX:3671542-3671662 ( 56) ATATCGAA 1 chr3R:30180108-30180228 ( 110) CTACCGAT 1 chr2R:6742113-6742233 ( 7) AAATCGAT 1 chr3L:20788067-20788187 ( 78) CTATCGCT 1 chr2R:22061174-22061294 ( 91) GTATCGAA 1 chr2R:6759094-6759214 ( 112) GAATCGAT 1 chrX:11869085-11869205 ( 112) GTATCGAA 1 chr3R:9756279-9756399 ( 111) CGATCGAT 1 chr2R:14771633-14771753 ( 38) CTATCGAC 1 chrX:13822723-13822843 ( 71) CCACCGAT 1 chrX:6533897-6534017 ( 41) CTACCGAA 1 chr3R:25983265-25983385 ( 96) CAATCGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTATCGAT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.76027 E= 1.2e-010 -84 127 -89 -48 -84 -44 -389 123 181 -1275 -1275 -1275 -1275 -232 -1275 175 -1275 221 -1275 -1275 -1275 -1275 222 -1275 175 -232 -1275 -1275 -49 -390 -1275 146 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTATCGAT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 1.2e-010 0.159420 0.521739 0.115942 0.202899 0.159420 0.159420 0.014493 0.666667 1.000000 0.000000 0.000000 0.000000 0.000000 0.043478 0.000000 0.956522 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.956522 0.043478 0.000000 0.000000 0.202899 0.014493 0.000000 0.782609 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTATCGAT MEME-1 regular expression -------------------------------------------------------------------------------- [CT]TATCGA[TA] -------------------------------------------------------------------------------- Time 7.37 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGACC MEME-2 width = 8 sites = 22 llr = 227 E-value = 1.3e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGACC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::1::8:: pos.-specific C :::::1aa probability G a:9:a1:: matrix T :a:a:::: bits 2.2 * ** 2.0 * * ** 1.8 ***** ** 1.6 ***** ** Relative 1.3 ***** ** Entropy 1.1 ***** ** (14.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:8072827-8072947 7 1.08e-05 CGTCCA GTGTGACC AGTGCTGACT chr3R:22745545-22745665 31 1.08e-05 GCGCGTGCGA GTGTGACC GTTTTCTATG chrX:10082465-10082585 53 1.08e-05 GGGCCGGGCA GTGTGACC GTGCTGCGAG chrX:4551810-4551930 77 1.08e-05 ACTCGCCGTC GTGTGACC AGACCCAAGC chr2R:9891650-9891770 37 1.08e-05 CGCAGCTCGA GTGTGACC GTGCGGCGAC chr2R:17747993-17748113 112 1.08e-05 CCACTGGCTA GTGTGACC G chrX:9162069-9162189 30 1.08e-05 GATAGTCGTC GTGTGACC GGCTTGCATA chr3L:11169586-11169706 34 1.08e-05 CAACAAAGCA GTGTGACC TTGCGCGGAT chr3L:6756431-6756551 78 1.08e-05 GTCACGTGCA GTGTGACC GTACATGCAG chr2R:12184213-12184333 65 1.08e-05 TTTTTGTGTA GTGTGACC ACAGCTGCGC chr3L:12145995-12146115 102 1.08e-05 GGGATAAACA GTGTGACC AACTATCGAT chr2L:3159560-3159680 68 1.08e-05 ATTGAAAACA GTGTGACC ATGACTGGCG chr3L:21131565-21131685 50 1.08e-05 AAGGACTTTA GTGTGACC CTATACAAAC chr3L:16112352-16112472 30 1.08e-05 GCCGGTACTA GTGTGACC GCAGCGTAAT chrX:9158428-9158548 69 1.89e-05 CTGGCTGTCA GTGTGGCC GAATACTGGT chr3L:212637-212757 21 1.89e-05 GCGTATCGGA GTGTGGCC GAAGCTGACA chr3L:4135982-4136102 54 1.89e-05 TGGGGCTGTA GTGTGGCC GTTTCTTGGG chrX:4548732-4548852 31 2.71e-05 GTTTGGCTTA GTGTGCCC GCCGGCGGGC chr3R:13958688-13958808 51 2.71e-05 ATTTTCACAA GTGTGCCC AGCTAAACGG chr2R:22127443-22127563 51 4.13e-05 CTGAAGTTCA GTATGACC GTACGCGTTT chr3R:29933031-29933151 23 4.13e-05 GATCCAAGCA GTATGACC GTGTCGCGAG chr3L:16860983-16861103 31 5.22e-05 TGTGGCACTT CTGTGACC ACTGCCAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8072827-8072947 1.1e-05 6_[+2]_106 chr3R:22745545-22745665 1.1e-05 30_[+2]_82 chrX:10082465-10082585 1.1e-05 52_[+2]_60 chrX:4551810-4551930 1.1e-05 76_[+2]_36 chr2R:9891650-9891770 1.1e-05 36_[+2]_76 chr2R:17747993-17748113 1.1e-05 111_[+2]_1 chrX:9162069-9162189 1.1e-05 29_[+2]_83 chr3L:11169586-11169706 1.1e-05 33_[+2]_79 chr3L:6756431-6756551 1.1e-05 77_[+2]_35 chr2R:12184213-12184333 1.1e-05 64_[+2]_48 chr3L:12145995-12146115 1.1e-05 101_[+2]_11 chr2L:3159560-3159680 1.1e-05 67_[+2]_45 chr3L:21131565-21131685 1.1e-05 49_[+2]_63 chr3L:16112352-16112472 1.1e-05 29_[+2]_83 chrX:9158428-9158548 1.9e-05 68_[+2]_44 chr3L:212637-212757 1.9e-05 20_[+2]_92 chr3L:4135982-4136102 1.9e-05 53_[+2]_59 chrX:4548732-4548852 2.7e-05 30_[+2]_82 chr3R:13958688-13958808 2.7e-05 50_[+2]_62 chr2R:22127443-22127563 4.1e-05 50_[+2]_62 chr3R:29933031-29933151 4.1e-05 22_[+2]_90 chr3L:16860983-16861103 5.2e-05 30_[+2]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGACC width=8 seqs=22 chr2L:8072827-8072947 ( 7) GTGTGACC 1 chr3R:22745545-22745665 ( 31) GTGTGACC 1 chrX:10082465-10082585 ( 53) GTGTGACC 1 chrX:4551810-4551930 ( 77) GTGTGACC 1 chr2R:9891650-9891770 ( 37) GTGTGACC 1 chr2R:17747993-17748113 ( 112) GTGTGACC 1 chrX:9162069-9162189 ( 30) GTGTGACC 1 chr3L:11169586-11169706 ( 34) GTGTGACC 1 chr3L:6756431-6756551 ( 78) GTGTGACC 1 chr2R:12184213-12184333 ( 65) GTGTGACC 1 chr3L:12145995-12146115 ( 102) GTGTGACC 1 chr2L:3159560-3159680 ( 68) GTGTGACC 1 chr3L:21131565-21131685 ( 50) GTGTGACC 1 chr3L:16112352-16112472 ( 30) GTGTGACC 1 chrX:9158428-9158548 ( 69) GTGTGGCC 1 chr3L:212637-212757 ( 21) GTGTGGCC 1 chr3L:4135982-4136102 ( 54) GTGTGGCC 1 chrX:4548732-4548852 ( 31) GTGTGCCC 1 chr3R:13958688-13958808 ( 51) GTGTGCCC 1 chr2R:22127443-22127563 ( 51) GTATGACC 1 chr3R:29933031-29933151 ( 23) GTATGACC 1 chr3L:16860983-16861103 ( 31) CTGTGACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3525 E= 1.3e-008 -1110 -225 215 -1110 -1110 -1110 -1110 182 -165 -1110 208 -1110 -1110 -1110 -1110 182 -1110 -1110 222 -1110 144 -125 -65 -1110 -1110 221 -1110 -1110 -1110 221 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.3e-008 0.000000 0.045455 0.954545 0.000000 0.000000 0.000000 0.000000 1.000000 0.090909 0.000000 0.909091 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.772727 0.090909 0.136364 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-2 regular expression -------------------------------------------------------------------------------- GTGTGACC -------------------------------------------------------------------------------- Time 13.48 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGYTGCY MEME-3 width = 8 sites = 29 llr = 266 E-value = 7.6e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGYTGCY MEME-3 Description -------------------------------------------------------------------------------- Simplified A :2:::::: pos.-specific C :7:4::a6 probability G a1a::a:1 matrix T :::6a::3 bits 2.2 * * ** 2.0 * * ** 1.8 * * *** 1.6 * * *** Relative 1.3 * * *** Entropy 1.1 * ***** (13.2 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGTTGCC consensus A C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGYTGCY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:24148868-24148988 93 1.44e-05 GCTGTCGCCA GCGCTGCC AGATCCGGAA chrX:16783854-16783974 14 1.44e-05 AATATCGATA GCGCTGCC AGATGTTTAC chrX:13722145-13722265 80 1.44e-05 TCACAAGCCA GCGTTGCC AACGGTTTGA chr2L:15771151-15771271 55 1.44e-05 TTCTAGCACC GCGTTGCC AACTTACTTG chr3R:20622146-20622266 49 1.44e-05 CTCTCTTTGT GCGCTGCC TCCGCTTAAC chrX:11347909-11348029 70 1.44e-05 GATCCGCACT GCGTTGCC GGATCATCCC chrX:5754955-5755075 35 1.44e-05 AAAAACTATA GCGTTGCC ACTTTCAACA chr2L:2045461-2045581 19 1.44e-05 TTCTGTGGCA GCGTTGCC AGATGCTGTC chrX:8251675-8251795 4 1.44e-05 ACC GCGTTGCC AACTGCCGCG chrX:7969517-7969637 101 3.34e-05 TGCTAACAGA GCGCTGCT ATGGTGAGAA chrX:16942955-16943075 105 3.34e-05 TTTACCGTGG GCGCTGCT TTAAAATT chr3L:16587166-16587286 84 3.34e-05 CCTCGCAGGT GCGTTGCT AGTGTGAACT chrX:6533611-6533731 80 3.34e-05 GTTGGAGGTC GCGTTGCT TAAGAAAAGT chrX:18136994-18137114 28 3.34e-05 CTTATTTTGT GCGCTGCT AATTTGTAGG chrX:21053662-21053782 83 3.34e-05 CTTTTTTTCG GCGCTGCT TAATTCGATG chrX:17842075-17842195 13 6.67e-05 GCCAGAGCCA GAGTTGCC ACCCTGCAGT chr3R:8357179-8357299 41 6.67e-05 TGCTGCGATA GCGCTGCG CAGATCGTCT chr2L:16350883-16351003 14 6.67e-05 GAGCACATCA GCGCTGCG CTGGCACTTT chr2L:20065562-20065682 22 6.67e-05 GCTCCGAGCT GCGTTGCG GGAACATCGT chr3R:15328171-15328291 95 6.67e-05 CGCTATATGC GAGTTGCC AAAACAGTGG chr3R:29319331-29319451 7 6.67e-05 ACGCCA GCGTTGCG GCCCGGTTTC chr2L:13835063-13835183 25 6.67e-05 GATACCATCA GAGTTGCC GCTGTGAGCT chr3R:25678621-25678741 46 8.10e-05 AGCTGTGCTA GGGTTGCC ACCTATTTCA chr2R:17747993-17748113 59 8.10e-05 AGACGCCAGG GGGCTGCC AACTTTACTT chrX:9148970-9149090 90 8.10e-05 CCCAGTTGCG GGGCTGCC AACTTAATGG chr2R:12430967-12431087 10 8.10e-05 GCACAGTTT GGGTTGCC TTTCCTAGGG chr2R:7463111-7463231 7 1.06e-04 AAAACC GAGCTGCT GGCATCTGGC chrX:11125081-11125201 15 1.06e-04 CAATAAAGAG GAGTTGCT TTCTTATCAG chr2L:9613056-9613176 67 1.06e-04 AACTACTGCA GAGTTGCT TTACGATAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGYTGCY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:24148868-24148988 1.4e-05 92_[+3]_20 chrX:16783854-16783974 1.4e-05 13_[+3]_99 chrX:13722145-13722265 1.4e-05 79_[+3]_33 chr2L:15771151-15771271 1.4e-05 54_[+3]_58 chr3R:20622146-20622266 1.4e-05 48_[+3]_64 chrX:11347909-11348029 1.4e-05 69_[+3]_43 chrX:5754955-5755075 1.4e-05 34_[+3]_78 chr2L:2045461-2045581 1.4e-05 18_[+3]_94 chrX:8251675-8251795 1.4e-05 3_[+3]_109 chrX:7969517-7969637 3.3e-05 100_[+3]_12 chrX:16942955-16943075 3.3e-05 104_[+3]_8 chr3L:16587166-16587286 3.3e-05 83_[+3]_29 chrX:6533611-6533731 3.3e-05 79_[+3]_33 chrX:18136994-18137114 3.3e-05 27_[+3]_85 chrX:21053662-21053782 3.3e-05 82_[+3]_30 chrX:17842075-17842195 6.7e-05 12_[+3]_100 chr3R:8357179-8357299 6.7e-05 40_[+3]_72 chr2L:16350883-16351003 6.7e-05 13_[+3]_99 chr2L:20065562-20065682 6.7e-05 21_[+3]_91 chr3R:15328171-15328291 6.7e-05 94_[+3]_18 chr3R:29319331-29319451 6.7e-05 6_[+3]_106 chr2L:13835063-13835183 6.7e-05 24_[+3]_88 chr3R:25678621-25678741 8.1e-05 45_[+3]_67 chr2R:17747993-17748113 8.1e-05 58_[+3]_54 chrX:9148970-9149090 8.1e-05 89_[+3]_23 chr2R:12430967-12431087 8.1e-05 9_[+3]_103 chr2R:7463111-7463231 0.00011 6_[+3]_106 chrX:11125081-11125201 0.00011 14_[+3]_98 chr2L:9613056-9613176 0.00011 66_[+3]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGYTGCY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGYTGCY width=8 seqs=29 chr3R:24148868-24148988 ( 93) GCGCTGCC 1 chrX:16783854-16783974 ( 14) GCGCTGCC 1 chrX:13722145-13722265 ( 80) GCGTTGCC 1 chr2L:15771151-15771271 ( 55) GCGTTGCC 1 chr3R:20622146-20622266 ( 49) GCGCTGCC 1 chrX:11347909-11348029 ( 70) GCGTTGCC 1 chrX:5754955-5755075 ( 35) GCGTTGCC 1 chr2L:2045461-2045581 ( 19) GCGTTGCC 1 chrX:8251675-8251795 ( 4) GCGTTGCC 1 chrX:7969517-7969637 ( 101) GCGCTGCT 1 chrX:16942955-16943075 ( 105) GCGCTGCT 1 chr3L:16587166-16587286 ( 84) GCGTTGCT 1 chrX:6533611-6533731 ( 80) GCGTTGCT 1 chrX:18136994-18137114 ( 28) GCGCTGCT 1 chrX:21053662-21053782 ( 83) GCGCTGCT 1 chrX:17842075-17842195 ( 13) GAGTTGCC 1 chr3R:8357179-8357299 ( 41) GCGCTGCG 1 chr2L:16350883-16351003 ( 14) GCGCTGCG 1 chr2L:20065562-20065682 ( 22) GCGTTGCG 1 chr3R:15328171-15328291 ( 95) GAGTTGCC 1 chr3R:29319331-29319451 ( 7) GCGTTGCG 1 chr2L:13835063-13835183 ( 25) GAGTTGCC 1 chr3R:25678621-25678741 ( 46) GGGTTGCC 1 chr2R:17747993-17748113 ( 59) GGGCTGCC 1 chrX:9148970-9149090 ( 90) GGGCTGCC 1 chr2R:12430967-12431087 ( 10) GGGTTGCC 1 chr2R:7463111-7463231 ( 7) GAGCTGCT 1 chrX:11125081-11125201 ( 15) GAGTTGCT 1 chr2L:9613056-9613176 ( 67) GAGTTGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGYTGCY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 7.6e-003 -1150 -1150 222 -1150 -46 160 -64 -1150 -1150 -1150 222 -1150 -1150 93 -1150 105 -1150 -1150 -1150 182 -1150 -1150 222 -1150 -1150 221 -1150 -1150 -1150 135 -64 13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGYTGCY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 7.6e-003 0.000000 0.000000 1.000000 0.000000 0.206897 0.655172 0.137931 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.413793 0.000000 0.586207 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.551724 0.137931 0.310345 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGYTGCY MEME-3 regular expression -------------------------------------------------------------------------------- G[CA]G[TC]TGC[CT] -------------------------------------------------------------------------------- Time 19.57 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTCACAC MEME-4 width = 8 sites = 10 llr = 114 E-value = 1.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a:a: pos.-specific C :::a:a:a probability G aa:::::: matrix T ::a::::: bits 2.2 ** * * * 2.0 ** * * * 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGTCACAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:22745545-22745665 96 1.09e-05 GTCAGCAAAC GGTCACAC TGGCACTAGT chr2L:5802143-5802263 82 1.09e-05 CGCGCCGCAA GGTCACAC TCTTCTGTGT chr3R:23933807-23933927 105 1.09e-05 ATCACGGGAT GGTCACAC TAGAAATA chr3L:11109588-11109708 103 1.09e-05 AAGCAAAAAC GGTCACAC TGCCCGCACA chr3L:4277928-4278048 38 1.09e-05 CGCACCTTCT GGTCACAC CTGAGCATTG chr3R:12413788-12413908 33 1.09e-05 TCCCAAGTCT GGTCACAC TGGAAGTGGC chr2L:7885374-7885494 82 1.09e-05 CAGCACAGAT GGTCACAC ATAATCGCGG chr3R:23924360-23924480 41 1.09e-05 TTCCGCATGC GGTCACAC TTAAAAGTGC chrX:647244-647364 62 1.09e-05 AAAAAGCGGC GGTCACAC TGCTTGAGCC chrX:17709680-17709800 51 1.09e-05 CTGTGCGACT GGTCACAC TGAATAGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:22745545-22745665 1.1e-05 95_[+4]_17 chr2L:5802143-5802263 1.1e-05 81_[+4]_31 chr3R:23933807-23933927 1.1e-05 104_[+4]_8 chr3L:11109588-11109708 1.1e-05 102_[+4]_10 chr3L:4277928-4278048 1.1e-05 37_[+4]_75 chr3R:12413788-12413908 1.1e-05 32_[+4]_80 chr2L:7885374-7885494 1.1e-05 81_[+4]_31 chr3R:23924360-23924480 1.1e-05 40_[+4]_72 chrX:647244-647364 1.1e-05 61_[+4]_51 chrX:17709680-17709800 1.1e-05 50_[+4]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTCACAC width=8 seqs=10 chr3R:22745545-22745665 ( 96) GGTCACAC 1 chr2L:5802143-5802263 ( 82) GGTCACAC 1 chr3R:23933807-23933927 ( 105) GGTCACAC 1 chr3L:11109588-11109708 ( 103) GGTCACAC 1 chr3L:4277928-4278048 ( 38) GGTCACAC 1 chr3R:12413788-12413908 ( 33) GGTCACAC 1 chr2L:7885374-7885494 ( 82) GGTCACAC 1 chr3R:23924360-23924480 ( 41) GGTCACAC 1 chrX:647244-647364 ( 62) GGTCACAC 1 chrX:17709680-17709800 ( 51) GGTCACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 1.8e+000 -997 -997 222 -997 -997 -997 222 -997 -997 -997 -997 182 -997 221 -997 -997 181 -997 -997 -997 -997 221 -997 -997 181 -997 -997 -997 -997 221 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.8e+000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 regular expression -------------------------------------------------------------------------------- GGTCACAC -------------------------------------------------------------------------------- Time 25.60 secs. ******************************************************************************** ******************************************************************************** MOTIF GSCGCMVA MEME-5 width = 8 sites = 24 llr = 226 E-value = 1.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSCGCMVA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::34a pos.-specific C :4a:a73: probability G a6:a::3: matrix T :::::::: bits 2.2 * *** 2.0 * *** 1.8 * *** * 1.6 * *** * Relative 1.3 ***** * Entropy 1.1 ****** * (13.6 bits) 0.9 ****** * 0.7 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCGCCAA consensus C AC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGCMVA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:9103937-9104057 105 8.25e-06 TTTGATTATA GGCGCCAA AAAGATGG chrX:13722145-13722265 112 8.25e-06 AATAACAAAC GGCGCCAA A chr2L:10056898-10057018 89 8.25e-06 AAATTCTGGC GGCGCCAA GCAGGCATTG chr3L:4135982-4136102 70 8.25e-06 CCGTTTCTTG GGCGCCAA AACACAACGG chr2L:5801942-5802062 47 8.25e-06 GAGCGCGGCA GGCGCCAA AAAATACCAT chr2L:15005611-15005731 46 8.25e-06 ATTCAAATTT GGCGCCAA GCTAATGTGG chr2R:13205336-13205456 20 8.25e-06 TGTTGTGTTT GGCGCCAA ACGGGCGGCA chr2R:9989308-9989428 20 2.08e-05 CGCCGAAATA GGCGCCGA CTGTGTCGGT chr3R:28340486-28340606 59 2.08e-05 TCAACGATGT GGCGCCCA AAACGGCCGA chr2R:16196475-16196595 74 2.08e-05 AGGAGTGCCG GGCGCCCA GACAGCAAAC chrX:13822723-13822843 93 2.08e-05 AACATTTTAT GGCGCCGA AATAATCCGG chr2R:14771633-14771753 72 2.08e-05 AACTATCGCC GGCGCCCA TCTCTGGGTT chr3R:8357179-8357299 93 2.91e-05 TGGCTAGAAG GCCGCCAA GCGAGCAGAG chr3R:12413996-12414116 112 4.17e-05 CGCTGTGTGG GCCGCCGA C chr3L:5779925-5780045 48 4.17e-05 ATTCAAAAGT GCCGCCCA ACTGCGGTAT chrX:21053662-21053782 28 4.17e-05 CCCTGGCGAC GCCGCCCA CGTCCAGCGT chr2L:16350883-16351003 74 5.25e-05 ACGAAACGTT GGCGCAAA GAGAAACGAA chr3L:4287234-4287354 109 5.25e-05 GATGATTCCA GGCGCAAA ATGC chr3R:13958688-13958808 101 6.90e-05 CGTTTTCGTG GGCGCAGA GAAAAAAATA chrX:2604093-2604213 93 9.65e-05 ATAGCAGACA GCCGCACA TATCTATCGC chr2R:21624419-21624539 67 9.65e-05 GTGCTGCCAG GCCGCAGA CTAACTGCAC chr3L:4277928-4278048 1 9.65e-05 . GCCGCAGA TACCTGGTCT chr3L:20771676-20771796 26 9.65e-05 CCAGGCGAAC GCCGCAGA AACCTGCCAA chr2L:2151947-2152067 16 9.65e-05 CGTTTCTTTC GCCGCACA ACGTTGTTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGCMVA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:9103937-9104057 8.2e-06 104_[+5]_8 chrX:13722145-13722265 8.2e-06 111_[+5]_1 chr2L:10056898-10057018 8.2e-06 88_[+5]_24 chr3L:4135982-4136102 8.2e-06 69_[+5]_43 chr2L:5801942-5802062 8.2e-06 46_[+5]_66 chr2L:15005611-15005731 8.2e-06 45_[+5]_67 chr2R:13205336-13205456 8.2e-06 19_[+5]_93 chr2R:9989308-9989428 2.1e-05 19_[+5]_93 chr3R:28340486-28340606 2.1e-05 58_[+5]_54 chr2R:16196475-16196595 2.1e-05 73_[+5]_39 chrX:13822723-13822843 2.1e-05 92_[+5]_20 chr2R:14771633-14771753 2.1e-05 71_[+5]_41 chr3R:8357179-8357299 2.9e-05 92_[+5]_20 chr3R:12413996-12414116 4.2e-05 111_[+5]_1 chr3L:5779925-5780045 4.2e-05 47_[+5]_65 chrX:21053662-21053782 4.2e-05 27_[+5]_85 chr2L:16350883-16351003 5.3e-05 73_[+5]_39 chr3L:4287234-4287354 5.3e-05 108_[+5]_4 chr3R:13958688-13958808 6.9e-05 100_[+5]_12 chrX:2604093-2604213 9.6e-05 92_[+5]_20 chr2R:21624419-21624539 9.6e-05 66_[+5]_46 chr3L:4277928-4278048 9.6e-05 [+5]_112 chr3L:20771676-20771796 9.6e-05 25_[+5]_87 chr2L:2151947-2152067 9.6e-05 15_[+5]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGCMVA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSCGCMVA width=8 seqs=24 chrX:9103937-9104057 ( 105) GGCGCCAA 1 chrX:13722145-13722265 ( 112) GGCGCCAA 1 chr2L:10056898-10057018 ( 89) GGCGCCAA 1 chr3L:4135982-4136102 ( 70) GGCGCCAA 1 chr2L:5801942-5802062 ( 47) GGCGCCAA 1 chr2L:15005611-15005731 ( 46) GGCGCCAA 1 chr2R:13205336-13205456 ( 20) GGCGCCAA 1 chr2R:9989308-9989428 ( 20) GGCGCCGA 1 chr3R:28340486-28340606 ( 59) GGCGCCCA 1 chr2R:16196475-16196595 ( 74) GGCGCCCA 1 chrX:13822723-13822843 ( 93) GGCGCCGA 1 chr2R:14771633-14771753 ( 72) GGCGCCCA 1 chr3R:8357179-8357299 ( 93) GCCGCCAA 1 chr3R:12413996-12414116 ( 112) GCCGCCGA 1 chr3L:5779925-5780045 ( 48) GCCGCCCA 1 chrX:21053662-21053782 ( 28) GCCGCCCA 1 chr2L:16350883-16351003 ( 74) GGCGCAAA 1 chr3L:4287234-4287354 ( 109) GGCGCAAA 1 chr3R:13958688-13958808 ( 101) GGCGCAGA 1 chrX:2604093-2604213 ( 93) GCCGCACA 1 chr2R:21624419-21624539 ( 67) GCCGCAGA 1 chr3L:4277928-4278048 ( 1) GCCGCAGA 1 chr3L:20771676-20771796 ( 26) GCCGCAGA 1 chr2L:2151947-2152067 ( 16) GCCGCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGCMVA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6476 E= 1.4e+000 -1123 -1123 222 -1123 -1123 79 154 -1123 -1123 221 -1123 -1123 -1123 -1123 222 -1123 -1123 221 -1123 -1123 22 162 -1123 -1123 55 43 44 -1123 181 -1123 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGCMVA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.4e+000 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.625000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.416667 0.291667 0.291667 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGCMVA MEME-5 regular expression -------------------------------------------------------------------------------- G[GC]CGC[CA][ACG]A -------------------------------------------------------------------------------- Time 31.65 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14603695-14603815 3.35e-01 120 chr3L:16787152-16787272 1.17e-01 96_[+4(9.32e-05)]_16 chrX:2170578-2170698 5.74e-01 120 chrX:14603902-14604022 8.16e-02 120 chrX:15746908-15747028 1.56e-01 120 chrX:17709680-17709800 1.45e-02 50_[+4(1.09e-05)]_62 chr3R:29933031-29933151 6.47e-02 22_[+2(4.13e-05)]_90 chr2R:14771633-14771753 1.13e-02 71_[+5(2.08e-05)]_41 chr3L:10631314-10631434 1.44e-01 120 chrX:3936298-3936418 5.28e-01 120 chr2R:14152826-14152946 2.47e-01 120 chr2L:13835063-13835183 1.08e-03 9_[+1(1.88e-05)]_7_[+3(6.67e-05)]_\ 88 chr3L:4626932-4627052 8.57e-01 120 chr2L:2151947-2152067 2.34e-02 15_[+5(9.65e-05)]_97 chr2R:14153029-14153149 1.78e-01 120 chr3L:16860983-16861103 1.53e-01 30_[+2(5.22e-05)]_82 chr3R:29933233-29933353 1.07e-01 79_[+4(9.32e-05)]_33 chr3L:7915344-7915464 2.30e-01 120 chr3L:16112566-16112686 7.40e-01 120 chrX:22482295-22482415 7.97e-02 64_[+1(5.79e-05)]_48 chr2R:23402141-23402261 8.02e-01 120 chrX:21053662-21053782 5.88e-03 27_[+5(4.17e-05)]_47_[+3(3.34e-05)]_\ 30 chr2R:7812014-7812134 1.70e-01 120 chr2L:6920024-6920144 3.11e-01 120 chrX:18379870-18379990 9.91e-01 120 chr3R:5660618-5660738 9.63e-02 120 chrX:12017892-12018012 2.36e-03 62_[+1(1.88e-05)]_39_[+1(1.88e-05)]_\ 3 chr2R:17572999-17573119 9.44e-01 120 chr2R:21624765-21624885 4.32e-01 120 chr3L:21441516-21441636 1.41e-01 120 chr3L:5779925-5780045 7.80e-02 47_[+5(4.17e-05)]_65 chr2L:9613056-9613176 9.00e-02 120 chrX:3949064-3949184 4.06e-01 120 chr2R:13205336-13205456 4.08e-02 19_[+5(8.25e-06)]_93 chr2L:16825110-16825230 2.72e-01 120 chr3L:5779632-5779752 5.57e-01 120 chr3R:24230038-24230158 6.22e-02 18_[+1(1.88e-05)]_94 chrX:9247275-9247395 2.87e-01 120 chr3L:16112352-16112472 8.66e-02 29_[+2(1.08e-05)]_83 chrX:647244-647364 9.86e-04 12_[+1(3.32e-05)]_41_[+4(1.09e-05)]_\ 51 chr3L:3047000-3047120 9.55e-02 120 chrX:11869085-11869205 3.36e-01 120 chr3R:12413996-12414116 5.34e-03 111_[+5(4.17e-05)]_1 chrX:18136994-18137114 1.08e-01 27_[+3(3.34e-05)]_85 chr3L:20788067-20788187 9.63e-03 120 chrX:11621683-11621803 7.62e-01 120 chr2R:17407269-17407389 4.90e-01 120 chrX:17302359-17302479 7.38e-01 120 chr3L:12336812-12336932 8.19e-01 120 chr3R:9015071-9015191 4.40e-01 120 chr3R:13958688-13958808 2.48e-03 50_[+2(2.71e-05)]_42_[+5(6.90e-05)]_\ 12 chr3L:8178241-8178361 2.32e-01 120 chrX:10596013-10596133 2.64e-02 33_[+1(5.79e-05)]_79 chr2R:20262867-20262987 3.26e-03 34_[+1(1.88e-05)]_78 chr3L:9972269-9972389 1.82e-01 120 chr3R:15361582-15361702 1.06e-01 100_[+1(1.88e-05)]_12 chrX:8251675-8251795 5.34e-03 3_[+3(1.44e-05)]_109 chr2L:15005611-15005731 1.64e-02 45_[+5(8.25e-06)]_67 chrX:625486-625606 1.45e-01 25_[+1(3.32e-05)]_87 chrX:6533611-6533731 1.39e-02 79_[+3(3.34e-05)]_33 chrX:17423461-17423581 4.24e-01 120 chr3R:27116663-27116783 1.41e-02 45_[+1(9.57e-05)]_67 chr2L:11100653-11100773 7.16e-01 120 chr3L:4287234-4287354 1.30e-01 108_[+5(5.25e-05)]_4 chr2L:5801942-5802062 4.07e-02 46_[+5(8.25e-06)]_66 chr3L:20771676-20771796 4.68e-02 25_[+5(9.65e-05)]_87 chr3R:9678185-9678305 3.39e-01 120 chr3L:16587166-16587286 2.92e-02 83_[+3(3.34e-05)]_29 chrX:18657012-18657132 1.62e-01 120 chr2R:8952043-8952163 1.69e-01 51_[+2(7.38e-05)]_61 chr2R:12636162-12636282 3.49e-02 44_[+4(9.32e-05)]_68 chrX:16800899-16801019 3.88e-01 120 chr3R:25249513-25249633 9.31e-01 120 chrX:18884367-18884487 4.26e-02 92_[+1(9.57e-05)]_20 chr3R:9754520-9754640 5.79e-01 120 chr2R:13168275-13168395 8.69e-01 120 chr3R:23924360-23924480 3.43e-04 6_[+1(5.79e-05)]_26_[+4(1.09e-05)]_\ 72 chr3L:4135982-4136102 2.74e-05 53_[+2(1.89e-05)]_8_[+5(8.25e-06)]_\ 32_[+1(5.79e-05)]_3 chrX:13822723-13822843 5.93e-03 92_[+5(2.08e-05)]_20 chr3L:21131565-21131685 3.16e-03 49_[+2(1.08e-05)]_63 chr2L:12103907-12104027 6.33e-01 120 chr3L:19806032-19806152 1.27e-01 120 chrX:16599154-16599274 3.61e-02 120 chr2R:16196475-16196595 4.72e-03 73_[+5(2.08e-05)]_39 chr2R:12430967-12431087 6.39e-02 9_[+3(8.10e-05)]_103 chrX:927844-927964 1.38e-01 120 chr3L:212637-212757 2.09e-02 20_[+2(1.89e-05)]_92 chr3R:10413166-10413286 4.11e-01 120 chrX:4104307-4104427 5.88e-01 120 chr3R:8122641-8122761 1.91e-01 120 chr3R:28340486-28340606 2.01e-02 58_[+5(2.08e-05)]_54 chr3R:31395798-31395918 6.09e-01 120 chr2L:3159560-3159680 9.83e-02 67_[+2(1.08e-05)]_45 chr3L:12145995-12146115 5.05e-05 101_[+2(1.08e-05)]_2_[+1(1.88e-05)]_\ 1 chrX:4548732-4548852 5.92e-02 30_[+2(2.71e-05)]_82 chr3R:5794596-5794716 1.79e-01 120 chr3R:23680304-23680424 5.24e-01 120 chr2R:19670736-19670856 5.60e-01 120 chrX:18385473-18385593 9.11e-01 120 chr2L:2045461-2045581 5.99e-02 18_[+3(1.44e-05)]_94 chr3L:22287888-22288008 4.57e-01 120 chr3L:12417470-12417590 6.95e-02 120 chr3R:23996285-23996405 1.25e-01 120 chr3R:25983265-25983385 3.30e-01 120 chrX:23082473-23082593 8.80e-01 120 chr3R:15832559-15832679 2.00e-01 120 chr3L:3472256-3472376 5.35e-01 120 chrX:11125081-11125201 3.62e-03 96_[+1(3.32e-05)]_6_[+1(9.57e-05)]_\ 2 chr3R:31463055-31463175 9.99e-01 120 chr2R:6742113-6742233 9.09e-03 108_[+2(8.20e-05)]_4 chr2R:12066378-12066498 7.48e-01 120 chrX:5754955-5755075 4.37e-04 34_[+3(1.44e-05)]_14_[+1(9.57e-05)]_\ 2_[+1(1.88e-05)]_46 chr2L:6723932-6724052 1.96e-01 120 chrX:4548951-4549071 8.73e-01 120 chr2R:9846703-9846823 2.72e-01 120 chr2R:12572021-12572141 6.07e-01 120 chr3R:30005065-30005185 3.67e-01 120 chr3R:27273280-27273400 1.33e-01 120 chr2R:12184213-12184333 8.38e-03 64_[+2(1.08e-05)]_48 chr2R:21720667-21720787 1.82e-01 120 chrX:18648103-18648223 3.32e-02 105_[+4(9.32e-05)]_7 chr2L:18448738-18448858 1.18e-01 120 chr3L:16786936-16787056 4.54e-01 120 chrX:15710911-15711031 6.04e-01 120 chr3R:16647731-16647851 1.60e-01 39_[+1(9.57e-05)]_73 chr2L:7885374-7885494 2.96e-03 81_[+4(1.09e-05)]_31 chr2L:7426900-7427020 5.68e-01 120 chr3L:2780943-2781063 1.04e-01 120 chrX:9158428-9158548 5.79e-02 68_[+2(1.89e-05)]_44 chr2R:12066166-12066286 3.96e-01 120 chr2R:12468794-12468914 1.03e-01 120 chr2R:18819803-18819923 9.79e-01 120 chr3R:12413788-12413908 1.02e-01 32_[+4(1.09e-05)]_80 chr3L:12399175-12399295 6.19e-01 120 chrX:11347909-11348029 6.92e-02 69_[+3(1.44e-05)]_43 chr3L:8633984-8634104 4.75e-01 120 chrX:11124731-11124851 5.55e-02 26_[+1(1.88e-05)]_86 chr3R:30806948-30807068 6.46e-01 120 chr3R:8723146-8723266 1.54e-01 120 chr3L:4277928-4278048 1.91e-03 [+5(9.65e-05)]_29_[+4(1.09e-05)]_75 chrX:14583030-14583150 2.23e-01 120 chr2R:23396604-23396724 5.03e-01 120 chr3R:30180108-30180228 3.78e-01 120 chr2L:560274-560394 2.21e-01 106_[+1(9.57e-05)]_6 chr3R:19645191-19645311 7.31e-02 120 chr3R:29319331-29319451 3.83e-02 6_[+3(6.67e-05)]_106 chr3L:6756431-6756551 7.27e-02 77_[+2(1.08e-05)]_35 chr3R:9756279-9756399 4.03e-01 120 chr2L:10517192-10517312 3.87e-02 106_[+1(9.57e-05)]_6 chrX:2585728-2585848 1.23e-01 120 chr2R:16186730-16186850 1.03e-01 120 chrX:16942955-16943075 5.56e-02 104_[+3(3.34e-05)]_8 chr2L:9252919-9253039 7.63e-01 120 chr3L:11109588-11109708 3.34e-03 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chrX:9148970-9149090 3.45e-02 89_[+3(8.10e-05)]_23 chr3R:15328171-15328291 7.92e-03 94_[+3(6.67e-05)]_18 chrX:805936-806056 4.86e-01 120 chr2R:12174975-12175095 6.37e-01 120 chr2R:17672370-17672490 4.75e-01 120 chr2R:18128310-18128430 1.03e-02 95_[+1(5.79e-05)]_17 chr2R:10068600-10068720 8.25e-01 120 chr2L:18943903-18944023 3.00e-02 93_[+1(1.88e-05)]_19 chr2L:10056898-10057018 1.13e-02 88_[+5(8.25e-06)]_24 chr3R:23933807-23933927 5.43e-03 104_[+4(1.09e-05)]_8 chr3R:20634967-20635087 9.69e-02 120 chrX:7969517-7969637 5.01e-02 100_[+3(3.34e-05)]_12 chr3R:11231852-11231972 3.15e-01 120 chr3R:5219544-5219664 7.86e-02 98_[+1(9.57e-05)]_14 chr2L:20065562-20065682 2.02e-01 21_[+3(6.67e-05)]_91 chrX:19579944-19580064 1.05e-01 54_[+1(1.88e-05)]_3_[+1(9.57e-05)]_\ 47 chr3R:12429476-12429596 4.97e-01 120 chrX:16655232-16655352 4.18e-01 120 chr2R:10124638-10124758 6.81e-01 120 chr3R:20057709-20057829 9.10e-01 120 chr3R:20622146-20622266 2.69e-02 48_[+3(1.44e-05)]_64 chr2L:19041839-19041959 3.61e-02 120 chr3L:11169586-11169706 8.59e-02 33_[+2(1.08e-05)]_79 chr3L:2782170-2782290 1.81e-01 120 chrX:9162069-9162189 1.06e-02 29_[+2(1.08e-05)]_83 chr3R:15278239-15278359 5.67e-01 120 chr2L:15771151-15771271 2.69e-03 34_[+1(5.79e-05)]_12_[+3(1.44e-05)]_\ 58 chr2L:19572380-19572500 8.76e-01 120 chrX:20251241-20251361 2.72e-02 120 chr2L:1704988-1705108 6.46e-02 90_[+1(9.57e-05)]_22 chr2R:24098374-24098494 4.42e-01 120 chr3R:9412479-9412599 3.57e-02 68_[+1(1.88e-05)]_44 chr2R:14618025-14618145 5.73e-01 120 chrX:13154941-13155061 7.15e-02 59_[+1(1.88e-05)]_53 chr2R:17747993-17748113 1.88e-03 58_[+3(8.10e-05)]_45_[+2(1.08e-05)]_\ 1 chr3L:20241591-20241711 9.02e-01 120 chr2R:21720468-21720588 3.55e-01 120 chrX:10010371-10010491 3.18e-01 120 chrX:3671542-3671662 6.44e-01 120 chr2L:20927680-20927800 9.22e-01 120 chrX:13722145-13722265 1.28e-03 32_[+3(1.44e-05)]_39_[+3(1.44e-05)]_\ 24_[+5(8.25e-06)]_1 chrX:16787449-16787569 7.71e-01 120 chr2R:22911847-22911967 9.91e-02 120 chrX:17423661-17423781 6.52e-01 120 chrX:9103937-9104057 5.01e-02 104_[+5(8.25e-06)]_8 chrX:4113961-4114081 9.98e-01 120 chr2R:23544004-23544124 1.87e-01 120 chrX:19663918-19664038 1.93e-01 120 chr2L:3530333-3530453 2.71e-01 120 chrX:16783854-16783974 1.02e-02 13_[+3(1.44e-05)]_99 chr3R:24148868-24148988 2.95e-03 92_[+3(1.44e-05)]_20 chr2R:22415728-22415848 3.72e-01 120 chr2R:9891855-9891975 9.12e-03 67_[+1(1.88e-05)]_45 chr3R:28599327-28599447 4.54e-01 120 chr3R:17685038-17685158 6.68e-02 120 chr2R:9891650-9891770 2.98e-02 36_[+2(1.08e-05)]_76 chrX:4551810-4551930 6.16e-02 76_[+2(1.08e-05)]_36 chrX:10082465-10082585 9.55e-03 52_[+2(1.08e-05)]_60 chr3R:6380240-6380360 2.86e-01 120 chr3R:13647995-13648115 1.68e-01 120 chr2L:5802143-5802263 2.50e-02 81_[+4(1.09e-05)]_31 chr2L:16350883-16351003 9.65e-03 13_[+3(6.67e-05)]_52_[+5(5.25e-05)]_\ 39 chr3R:8357179-8357299 1.47e-02 40_[+3(6.67e-05)]_44_[+5(2.91e-05)]_\ 20 chr3R:22745545-22745665 1.15e-03 30_[+2(1.08e-05)]_57_[+4(1.09e-05)]_\ 17 chrX:16803347-16803467 2.20e-01 120 chrX:17842075-17842195 2.56e-02 12_[+3(6.67e-05)]_100 chr2R:22061174-22061294 5.81e-01 120 chr2L:8072827-8072947 6.93e-02 6_[+2(1.08e-05)]_106 chr3R:6647074-6647194 3.89e-01 120 chr2L:8685920-8686040 7.92e-01 120 chr3R:24805166-24805286 5.22e-01 120 chrX:2604093-2604213 7.24e-02 92_[+5(9.65e-05)]_20 chr3R:25678621-25678741 1.16e-01 45_[+3(8.10e-05)]_67 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************