******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Side.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:18837990-18838110 1.0000 120 chr2R:20590669-20590789 1.0000 120 chr3R:15963921-15964041 1.0000 120 chr2L:9911918-9912038 1.0000 120 chr3R:15920866-15920986 1.0000 120 chrX:8141444-8141564 1.0000 120 chr3R:27289716-27289836 1.0000 120 chr3L:1802921-1803041 1.0000 120 chr3R:26859410-26859530 1.0000 120 chrX:10184798-10184918 1.0000 120 chr3R:10024206-10024326 1.0000 120 chrX:3136851-3136971 1.0000 120 chr2R:18609029-18609149 1.0000 120 chr2L:22168568-22168688 1.0000 120 chrX:8409241-8409361 1.0000 120 chr2R:25183097-25183217 1.0000 120 chr3R:10100671-10100791 1.0000 120 chr2R:14482521-14482641 1.0000 120 chr3L:5654698-5654818 1.0000 120 chrX:3690780-3690900 1.0000 120 chr2R:7167961-7168081 1.0000 120 chr3L:14335901-14336021 1.0000 120 chrX:5889086-5889206 1.0000 120 chrX:4540643-4540763 1.0000 120 chr2R:6133362-6133482 1.0000 120 chr2L:18881439-18881559 1.0000 120 chr2L:22019062-22019182 1.0000 120 chrX:17465676-17465796 1.0000 120 chrX:8417119-8417239 1.0000 120 chrX:8720343-8720463 1.0000 120 chrX:8677538-8677658 1.0000 120 chr2L:9497368-9497488 1.0000 120 chr3L:12804869-12804989 1.0000 120 chr2L:14141356-14141476 1.0000 120 chr3R:30200198-30200318 1.0000 120 chr2R:22450430-22450550 1.0000 120 chr3L:11003024-11003144 1.0000 120 chr3L:14776094-14776214 1.0000 120 chr3L:10860197-10860317 1.0000 120 chr2R:19413318-19413438 1.0000 120 chr3R:7129547-7129667 1.0000 120 chr2L:143230-143350 1.0000 120 chrX:13789074-13789194 1.0000 120 chrX:3779858-3779978 1.0000 120 chr2R:9116414-9116534 1.0000 120 chrX:16103589-16103709 1.0000 120 chr3R:31603734-31603854 1.0000 120 chr2L:5977552-5977672 1.0000 120 chr2R:22158064-22158184 1.0000 120 chr2L:15254327-15254447 1.0000 120 chr3L:19190888-19191008 1.0000 120 chr2R:23202163-23202283 1.0000 120 chr3R:20276139-20276259 1.0000 120 chr3R:26867665-26867785 1.0000 120 chr2R:6603157-6603277 1.0000 120 chrX:15319379-15319499 1.0000 120 chr2R:24132896-24133016 1.0000 120 chr3L:12350477-12350597 1.0000 120 chr2R:16849541-16849661 1.0000 120 chrX:7703102-7703222 1.0000 120 chrX:14749253-14749373 1.0000 120 chr2L:10276952-10277072 1.0000 120 chr2R:19874610-19874730 1.0000 120 chr3R:10656104-10656224 1.0000 120 chr2R:21475067-21475187 1.0000 120 chr2R:7071127-7071247 1.0000 120 chr2R:21082664-21082784 1.0000 120 chr3L:21821869-21821989 1.0000 120 chr3L:4272320-4272440 1.0000 120 chr3R:13660420-13660540 1.0000 120 chr2R:21141900-21142020 1.0000 120 chr2R:10238137-10238257 1.0000 120 chr3R:10598327-10598447 1.0000 120 chr2L:3888283-3888403 1.0000 120 chrX:19494411-19494531 1.0000 120 chrX:10366114-10366234 1.0000 120 chr3R:23228765-23228885 1.0000 120 chr3R:10203703-10203823 1.0000 120 chr2L:8554409-8554529 1.0000 120 chrX:18900069-18900189 1.0000 120 chrX:12221656-12221776 1.0000 120 chr3L:1463800-1463920 1.0000 120 chr3L:7961375-7961495 1.0000 120 chr3R:16276352-16276472 1.0000 120 chr2L:7544494-7544614 1.0000 120 chr2L:7811460-7811580 1.0000 120 chr2R:10066626-10066746 1.0000 120 chrX:4498360-4498480 1.0000 120 chr2R:12025179-12025299 1.0000 120 chr2R:23180950-23181070 1.0000 120 chr2R:11198410-11198530 1.0000 120 chr3R:29068957-29069077 1.0000 120 chr3L:11540402-11540522 1.0000 120 chr3L:17961715-17961835 1.0000 120 chr2R:18774940-18775060 1.0000 120 chr2L:8740216-8740336 1.0000 120 chr2L:3600979-3601099 1.0000 120 chr3L:12079093-12079213 1.0000 120 chr3R:27440766-27440886 1.0000 120 chr3R:20574793-20574913 1.0000 120 chr2L:21619182-21619302 1.0000 120 chr3L:15565909-15566029 1.0000 120 chr2R:18811966-18812086 1.0000 120 chr2L:12108870-12108990 1.0000 120 chr2R:15922089-15922209 1.0000 120 chr2R:17420072-17420192 1.0000 120 chr3L:9698318-9698438 1.0000 120 chrX:3862443-3862563 1.0000 120 chrX:16650534-16650654 1.0000 120 chrX:6279218-6279338 1.0000 120 chr2R:14769323-14769443 1.0000 120 chr3L:5789880-5790000 1.0000 120 chr2R:7735319-7735439 1.0000 120 chrX:13332948-13333068 1.0000 120 chrX:5892195-5892315 1.0000 120 chr2R:6494351-6494471 1.0000 120 chr3R:30812684-30812804 1.0000 120 chr2L:18320111-18320231 1.0000 120 chr2L:19549611-19549731 1.0000 120 chr3R:5065112-5065232 1.0000 120 chr3L:20785222-20785342 1.0000 120 chrX:1380481-1380601 1.0000 120 chr3R:20257414-20257534 1.0000 120 chr2L:5980989-5981109 1.0000 120 chrX:4262786-4262906 1.0000 120 chr3R:21499592-21499712 1.0000 120 chr3L:21962006-21962126 1.0000 120 chr2R:17091770-17091890 1.0000 120 chr3L:8584213-8584333 1.0000 120 chr3R:29229241-29229361 1.0000 120 chr3R:8180465-8180585 1.0000 120 chr3R:9039501-9039621 1.0000 120 chr2L:10488603-10488723 1.0000 120 chr2L:15762634-15762754 1.0000 120 chr3L:14190143-14190263 1.0000 120 chrX:12654402-12654522 1.0000 120 chr2R:17097330-17097450 1.0000 120 chr3R:17828862-17828982 1.0000 120 chr3L:12116012-12116132 1.0000 120 chr3L:18765887-18766007 1.0000 120 chr2R:17458377-17458497 1.0000 120 chr3R:23922135-23922255 1.0000 120 chr2R:18693245-18693365 1.0000 120 chr3R:14817900-14818020 1.0000 120 chr2R:16731270-16731390 1.0000 120 chr2R:11809429-11809549 1.0000 120 chr2L:11203755-11203875 1.0000 120 chr2R:7457773-7457893 1.0000 120 chr3R:30802294-30802414 1.0000 120 chr3R:28845310-28845430 1.0000 120 chr2R:13008269-13008389 1.0000 120 chrX:6615576-6615696 1.0000 120 chrX:21630011-21630131 1.0000 120 chrX:16278211-16278331 1.0000 120 chr2L:18563075-18563195 1.0000 120 chr2R:20274425-20274545 1.0000 120 chr2L:17583142-17583262 1.0000 120 chr3L:15729515-15729635 1.0000 120 chr2L:20715193-20715313 1.0000 120 chr2R:23970040-23970160 1.0000 120 chr3R:14714225-14714345 1.0000 120 chr3R:20555148-20555268 1.0000 120 chr3R:30767238-30767358 1.0000 120 chr3L:10745729-10745849 1.0000 120 chr2R:18536735-18536855 1.0000 120 chrX:7307662-7307782 1.0000 120 chrX:2294685-2294805 1.0000 120 chrX:19770239-19770359 1.0000 120 chr2L:18136718-18136838 1.0000 120 chr2L:10565835-10565955 1.0000 120 chr2L:19377571-19377691 1.0000 120 chr3R:4821266-4821386 1.0000 120 chrX:7553480-7553600 1.0000 120 chrX:3357743-3357863 1.0000 120 chr3L:12803759-12803879 1.0000 120 chrX:16610685-16610805 1.0000 120 chr3L:11247562-11247682 1.0000 120 chr2R:8242648-8242768 1.0000 120 chr3R:9701484-9701604 1.0000 120 chr3L:129441-129561 1.0000 120 chr3L:5857100-5857220 1.0000 120 chr3R:21580190-21580310 1.0000 120 chrX:796493-796613 1.0000 120 chr2L:11206946-11207066 1.0000 120 chrX:6614421-6614541 1.0000 120 chrX:18635414-18635534 1.0000 120 chr2L:3852296-3852416 1.0000 120 chr3L:14028615-14028735 1.0000 120 chr3R:5758922-5759042 1.0000 120 chr3L:14956414-14956534 1.0000 120 chr2R:11640878-11640998 1.0000 120 chr3R:8563925-8564045 1.0000 120 chr2R:21060533-21060653 1.0000 120 chrX:4366320-4366440 1.0000 120 chrX:16967540-16967660 1.0000 120 chr3L:6752388-6752508 1.0000 120 chrX:17176693-17176813 1.0000 120 chrX:17510676-17510796 1.0000 120 chr2R:13926281-13926401 1.0000 120 chr3R:21850156-21850276 1.0000 120 chr3R:20593073-20593193 1.0000 120 chr3L:15532697-15532817 1.0000 120 chr2R:12705163-12705283 1.0000 120 chrX:7015047-7015167 1.0000 120 chr3R:10696511-10696631 1.0000 120 chr3L:21516882-21517002 1.0000 120 chrX:19887338-19887458 1.0000 120 chr3L:15691370-15691490 1.0000 120 chr2L:3042231-3042351 1.0000 120 chrX:5639251-5639371 1.0000 120 chr2L:10516917-10517037 1.0000 120 chr2R:25011303-25011423 1.0000 120 chr3L:8526239-8526359 1.0000 120 chr2L:3598571-3598691 1.0000 120 chr2R:21712069-21712189 1.0000 120 chr3R:24625564-24625684 1.0000 120 chr2L:1473630-1473750 1.0000 120 chr2R:15835447-15835567 1.0000 120 chr3R:25648119-25648239 1.0000 120 chr2L:10856633-10856753 1.0000 120 chr3L:19933099-19933219 1.0000 120 chr2R:24086537-24086657 1.0000 120 chr3L:19897035-19897155 1.0000 120 chr3R:12426142-12426262 1.0000 120 chr3R:25885285-25885405 1.0000 120 chr2L:22024593-22024713 1.0000 120 chr2R:13482283-13482403 1.0000 120 chr2R:24593750-24593870 1.0000 120 chr3R:4714110-4714230 1.0000 120 chr2R:11095289-11095409 1.0000 120 chrX:11427441-11427561 1.0000 120 chr2R:23176727-23176847 1.0000 120 chrX:3188575-3188695 1.0000 120 chr2L:1150694-1150814 1.0000 120 chrX:4530038-4530158 1.0000 120 chr3L:12081703-12081823 1.0000 120 chr3R:9055180-9055300 1.0000 120 chr3R:24050776-24050896 1.0000 120 chr3R:14625688-14625808 1.0000 120 chr3L:18114475-18114595 1.0000 120 chr3R:5076410-5076530 1.0000 120 chr3L:19000634-19000754 1.0000 120 chr2R:21183209-21183329 1.0000 120 chr3R:20948102-20948222 1.0000 120 chr3L:1795351-1795471 1.0000 120 chrX:1370194-1370314 1.0000 120 chr2L:4394063-4394183 1.0000 120 chr3L:12062959-12063079 1.0000 120 chr2L:8535835-8535955 1.0000 120 chr2R:23092287-23092407 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Side/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Side.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.29 C 0.213 G 0.205 T 0.292 Background letter frequencies (from file dataset with add-one prior applied): A 0.29 C 0.213 G 0.205 T 0.292 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF MAAASAAA MEME-1 width = 8 sites = 67 llr = 493 E-value = 2.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAAASAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3aaa1a7a pos.-specific C 6:::4:1: probability G 1:::3:2: matrix T ::::2::: bits 2.3 2.1 1.8 *** * * 1.6 *** * * Relative 1.4 *** * * Entropy 1.1 *** * * (10.6 bits) 0.9 *** * * 0.7 **** *** 0.5 **** *** 0.2 ******** 0.0 -------- Multilevel CAAACAAA consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAASAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:25885285-25885405 40 2.70e-05 ATAAGGTCGG CAAACAAA ATACTTATCG chr3L:15532697-15532817 83 2.70e-05 TTAAAGTGCA CAAACAAA AATCATATTT chr3R:9701484-9701604 94 2.70e-05 CGCTAATTGA CAAACAAA ACCAGCGAAA chrX:2294685-2294805 10 2.70e-05 ATTTGCACT CAAACAAA GAGAGAGCGA chr2R:17458377-17458497 39 2.70e-05 ACGTACCGTA CAAACAAA CAGACGTGCG chr3L:5789880-5790000 11 2.70e-05 catttacaca caaacaaa aaagcaatca chr3L:12079093-12079213 68 2.70e-05 GAAGCAGAAA CAAACAAA CTTCAAGACG chr2R:6603157-6603277 112 2.70e-05 AATAAGGCAA CAAACAAA A chr2R:18609029-18609149 83 2.70e-05 GTTGAAGAGG CAAACAAA CACGGTGACG chr3R:8563925-8564045 102 5.30e-05 TTATTATTAT CAAAGAAA CTTTTAGATA chrX:13332948-13333068 107 5.30e-05 GTAACGCGCA CAAAGAAA ATTTCC chr2L:3888283-3888403 94 5.30e-05 AAAAGGTAAA CAAAGAAA ATTGTACACA chr2R:19874610-19874730 4 5.30e-05 ATA CAAAGAAA GAAGAAATTG chr2L:1150694-1150814 39 8.97e-05 TTATTTATTG AAAACAAA TCGGTGTCAC chrX:19770239-19770359 42 8.97e-05 ACTCGAAAAA AAAACAAA TGGTGATTAA chr2R:14769323-14769443 58 8.97e-05 GACATTTCCA AAAACAAA CGACGGCGAC chr3L:9698318-9698438 17 8.97e-05 ACACTACGGA AAAACAAA AAAGAAATAG chr2R:21141900-21142020 56 8.97e-05 CGGAATATCG AAAACAAA TGAAAACTGA chr2L:22019062-22019182 41 8.97e-05 GCTATAAATC AAAACAAA GGTGCTCGAC chr2L:8535835-8535955 76 1.09e-04 TTATTATTCC CAAACAGA AATCATAAAT chr2R:23180950-23181070 68 1.09e-04 TTGTAAAATG CAAACAGA ACACGCAACG chr2L:3598571-3598691 32 1.81e-04 ACACTGCACG AAAAGAAA AGCTCAAGCT chr2L:11206946-11207066 62 1.81e-04 TTGAGCGGTA CAAATAAA CGAATGTATG chr3L:129441-129561 112 1.81e-04 TATCGCGCCA AAAAGAAA T chr2R:8242648-8242768 30 1.81e-04 GTTTACAATG CAAATAAA TTGAGATCGT chr2R:20274425-20274545 31 1.81e-04 CTCCGCTCAA AAAAGAAA CGTTCTTGCC chr3L:21962006-21962126 40 1.81e-04 TGTCGGACAA CAAATAAA CAACCCAAAC chr2R:11198410-11198530 8 1.81e-04 AAGGCAG AAAAGAAA CCACAAAAGA chrX:7703102-7703222 22 1.81e-04 ttagaataat caaataaa taataattac chr3R:7129547-7129667 32 1.81e-04 GTCTTGCATA CAAATAAA TATCCACCAC chrX:8417119-8417239 2 1.81e-04 A AAAAGAAA GAAATTCCAG chr3L:18837990-18838110 68 1.81e-04 GTAAATAACC AAAAGAAA TGGAGAGATA chr3L:14028615-14028735 82 2.19e-04 cccgctcaca caaacaca cacacacgta chr2L:18136718-18136838 31 2.19e-04 ATGTAGTGTG CAAACACA AATATTAGCA chr2L:8740216-8740336 83 2.19e-04 TATTAAAGCG CAAAGAGA GAGTCTAGAA chr3R:10598327-10598447 19 2.19e-04 TTGCTGTAGG CAAACACA TACGGTAGGA chr2R:10238137-10238257 68 2.19e-04 ACTTCTACGG caaacaca cacacatgcc chr3L:12804869-12804989 6 2.19e-04 GCGTA CAAACACA CACTTGCAGG chr2R:6133362-6133482 110 2.19e-04 TATACCAATA CAAACACA GCT chr2R:7167961-7168081 22 2.19e-04 AACACGAGCA CAAACACA AATAGGCATC chr2R:23176727-23176847 85 2.56e-04 AATTTCCAAG CAAAAAAA AGACTTGACT chr3R:21850156-21850276 110 2.56e-04 CGGACTCGGC CAAAAAAA AAA chr3R:23228765-23228885 112 2.56e-04 TTGCCCCTCG CAAAAAAA G chr2L:10276952-10277072 6 2.56e-04 GCACT CAAAAAAA CGAGACAGAC chr3L:19897035-19897155 34 3.01e-04 AAGTTCCAAC AAAACAGA AAGAAAAACA chr3L:17961715-17961835 113 3.01e-04 CTTCGGTCTC AAAACAGA chrX:8141444-8141564 39 3.77e-04 GTTAAACGCA AAAATAAA TAAGTAATTA chr3R:24050776-24050896 52 4.56e-04 GAGACAGTAA AAAAGAGA GAAATAACAG chr3R:12426142-12426262 105 4.56e-04 CTTACTGTGG AAAAGAGA TGGGAGAC chr3L:19933099-19933219 56 4.56e-04 CAAGGTGTAC AAAAGAGA GAATTTGTGA chr3L:14956414-14956534 48 4.56e-04 TCTCGCTGGG CAAATAGA AGTTTTCTTT chr3L:18765887-18766007 88 4.56e-04 tctctctTGC CAAATAGA GAGCGAGCAG chr2L:15762634-15762754 78 4.56e-04 CACTACCGCC AAAACACA GAGGCAACCG chr2L:5977552-5977672 18 4.56e-04 gagagagaac aaaagaga tggagacaaa chr3L:10860197-10860317 42 4.56e-04 CAGGCAGACG CAAATAGA CGCAGACACA chrX:10184798-10184918 46 4.56e-04 TTGGGAAATG CAAATAGA AGTCGTTTGT chr3R:10696511-10696631 45 4.81e-04 GTAGAGTTTG GAAAGAAA AGCTGGCAAA chrX:17510676-17510796 111 4.81e-04 TCAGGCAATC GAAAGAAA GT chr2L:7544494-7544614 54 4.81e-04 GATCAACAAG GAAAGAAA TTGTATCATC chr3L:1463800-1463920 95 4.81e-04 aattgaaact gaaaGAAA GAAATATTCA chrX:19887338-19887458 79 5.31e-04 CTAAAAAGTA AAAAAAAA GTGTAAAACA chr3R:10656104-10656224 83 5.31e-04 GGAATCTATT AAAAAAAA GTTTTGGAAA chr3L:1802921-1803041 10 5.31e-04 TATATATTA AAAAAAAA TTGAATTTGC chr3L:11247562-11247682 44 6.10e-04 Gtacacaatg caaataca catacagttg chr3L:12350477-12350597 67 6.10e-04 GTGGCTTCTC CAAATACA GTTGAGATAC chr3R:9055180-9055300 77 8.71e-04 CATGAATTCT GAAAAAAA CTAGTGAATT chr2R:16849541-16849661 51 8.71e-04 ACTTACAGTG GAAAAAAA TACCCATGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAASAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:25885285-25885405 2.7e-05 39_[+1]_73 chr3L:15532697-15532817 2.7e-05 82_[+1]_30 chr3R:9701484-9701604 2.7e-05 93_[+1]_19 chrX:2294685-2294805 2.7e-05 9_[+1]_103 chr2R:17458377-17458497 2.7e-05 38_[+1]_74 chr3L:5789880-5790000 2.7e-05 10_[+1]_102 chr3L:12079093-12079213 2.7e-05 67_[+1]_45 chr2R:6603157-6603277 2.7e-05 111_[+1]_1 chr2R:18609029-18609149 2.7e-05 82_[+1]_30 chr3R:8563925-8564045 5.3e-05 101_[+1]_11 chrX:13332948-13333068 5.3e-05 106_[+1]_6 chr2L:3888283-3888403 5.3e-05 93_[+1]_19 chr2R:19874610-19874730 5.3e-05 3_[+1]_109 chr2L:1150694-1150814 9e-05 38_[+1]_74 chrX:19770239-19770359 9e-05 41_[+1]_71 chr2R:14769323-14769443 9e-05 57_[+1]_55 chr3L:9698318-9698438 9e-05 16_[+1]_96 chr2R:21141900-21142020 9e-05 55_[+1]_57 chr2L:22019062-22019182 9e-05 40_[+1]_72 chr2L:8535835-8535955 0.00011 75_[+1]_37 chr2R:23180950-23181070 0.00011 67_[+1]_45 chr2L:3598571-3598691 0.00018 31_[+1]_81 chr2L:11206946-11207066 0.00018 61_[+1]_51 chr3L:129441-129561 0.00018 111_[+1]_1 chr2R:8242648-8242768 0.00018 29_[+1]_83 chr2R:20274425-20274545 0.00018 30_[+1]_82 chr3L:21962006-21962126 0.00018 39_[+1]_73 chr2R:11198410-11198530 0.00018 7_[+1]_105 chrX:7703102-7703222 0.00018 21_[+1]_91 chr3R:7129547-7129667 0.00018 31_[+1]_81 chrX:8417119-8417239 0.00018 1_[+1]_111 chr3L:18837990-18838110 0.00018 67_[+1]_45 chr3L:14028615-14028735 0.00022 81_[+1]_31 chr2L:18136718-18136838 0.00022 30_[+1]_82 chr2L:8740216-8740336 0.00022 82_[+1]_30 chr3R:10598327-10598447 0.00022 18_[+1]_94 chr2R:10238137-10238257 0.00022 67_[+1]_45 chr3L:12804869-12804989 0.00022 5_[+1]_107 chr2R:6133362-6133482 0.00022 109_[+1]_3 chr2R:7167961-7168081 0.00022 21_[+1]_91 chr2R:23176727-23176847 0.00026 84_[+1]_28 chr3R:21850156-21850276 0.00026 109_[+1]_3 chr3R:23228765-23228885 0.00026 111_[+1]_1 chr2L:10276952-10277072 0.00026 5_[+1]_107 chr3L:19897035-19897155 0.0003 33_[+1]_79 chr3L:17961715-17961835 0.0003 112_[+1] chrX:8141444-8141564 0.00038 38_[+1]_74 chr3R:24050776-24050896 0.00046 51_[+1]_61 chr3R:12426142-12426262 0.00046 104_[+1]_8 chr3L:19933099-19933219 0.00046 55_[+1]_57 chr3L:14956414-14956534 0.00046 47_[+1]_65 chr3L:18765887-18766007 0.00046 87_[+1]_25 chr2L:15762634-15762754 0.00046 77_[+1]_35 chr2L:5977552-5977672 0.00046 17_[+1]_95 chr3L:10860197-10860317 0.00046 41_[+1]_71 chrX:10184798-10184918 0.00046 45_[+1]_67 chr3R:10696511-10696631 0.00048 44_[+1]_68 chrX:17510676-17510796 0.00048 110_[+1]_2 chr2L:7544494-7544614 0.00048 53_[+1]_59 chr3L:1463800-1463920 0.00048 94_[+1]_18 chrX:19887338-19887458 0.00053 78_[+1]_34 chr3R:10656104-10656224 0.00053 82_[+1]_30 chr3L:1802921-1803041 0.00053 9_[+1]_103 chr3L:11247562-11247682 0.00061 43_[+1]_69 chr3L:12350477-12350597 0.00061 66_[+1]_46 chr3R:9055180-9055300 0.00087 76_[+1]_36 chr2R:16849541-16849661 0.00087 50_[+1]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAASAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAAASAAA width=8 seqs=67 chr3R:25885285-25885405 ( 40) CAAACAAA 1 chr3L:15532697-15532817 ( 83) CAAACAAA 1 chr3R:9701484-9701604 ( 94) CAAACAAA 1 chrX:2294685-2294805 ( 10) CAAACAAA 1 chr2R:17458377-17458497 ( 39) CAAACAAA 1 chr3L:5789880-5790000 ( 11) CAAACAAA 1 chr3L:12079093-12079213 ( 68) CAAACAAA 1 chr2R:6603157-6603277 ( 112) CAAACAAA 1 chr2R:18609029-18609149 ( 83) CAAACAAA 1 chr3R:8563925-8564045 ( 102) CAAAGAAA 1 chrX:13332948-13333068 ( 107) CAAAGAAA 1 chr2L:3888283-3888403 ( 94) CAAAGAAA 1 chr2R:19874610-19874730 ( 4) CAAAGAAA 1 chr2L:1150694-1150814 ( 39) AAAACAAA 1 chrX:19770239-19770359 ( 42) AAAACAAA 1 chr2R:14769323-14769443 ( 58) AAAACAAA 1 chr3L:9698318-9698438 ( 17) AAAACAAA 1 chr2R:21141900-21142020 ( 56) AAAACAAA 1 chr2L:22019062-22019182 ( 41) AAAACAAA 1 chr2L:8535835-8535955 ( 76) CAAACAGA 1 chr2R:23180950-23181070 ( 68) CAAACAGA 1 chr2L:3598571-3598691 ( 32) AAAAGAAA 1 chr2L:11206946-11207066 ( 62) CAAATAAA 1 chr3L:129441-129561 ( 112) AAAAGAAA 1 chr2R:8242648-8242768 ( 30) CAAATAAA 1 chr2R:20274425-20274545 ( 31) AAAAGAAA 1 chr3L:21962006-21962126 ( 40) CAAATAAA 1 chr2R:11198410-11198530 ( 8) AAAAGAAA 1 chrX:7703102-7703222 ( 22) CAAATAAA 1 chr3R:7129547-7129667 ( 32) CAAATAAA 1 chrX:8417119-8417239 ( 2) AAAAGAAA 1 chr3L:18837990-18838110 ( 68) AAAAGAAA 1 chr3L:14028615-14028735 ( 82) CAAACACA 1 chr2L:18136718-18136838 ( 31) CAAACACA 1 chr2L:8740216-8740336 ( 83) CAAAGAGA 1 chr3R:10598327-10598447 ( 19) CAAACACA 1 chr2R:10238137-10238257 ( 68) CAAACACA 1 chr3L:12804869-12804989 ( 6) CAAACACA 1 chr2R:6133362-6133482 ( 110) CAAACACA 1 chr2R:7167961-7168081 ( 22) CAAACACA 1 chr2R:23176727-23176847 ( 85) CAAAAAAA 1 chr3R:21850156-21850276 ( 110) CAAAAAAA 1 chr3R:23228765-23228885 ( 112) CAAAAAAA 1 chr2L:10276952-10277072 ( 6) CAAAAAAA 1 chr3L:19897035-19897155 ( 34) AAAACAGA 1 chr3L:17961715-17961835 ( 113) AAAACAGA 1 chrX:8141444-8141564 ( 39) AAAATAAA 1 chr3R:24050776-24050896 ( 52) AAAAGAGA 1 chr3R:12426142-12426262 ( 105) AAAAGAGA 1 chr3L:19933099-19933219 ( 56) AAAAGAGA 1 chr3L:14956414-14956534 ( 48) CAAATAGA 1 chr3L:18765887-18766007 ( 88) CAAATAGA 1 chr2L:15762634-15762754 ( 78) AAAACACA 1 chr2L:5977552-5977672 ( 18) AAAAGAGA 1 chr3L:10860197-10860317 ( 42) CAAATAGA 1 chrX:10184798-10184918 ( 46) CAAATAGA 1 chr3R:10696511-10696631 ( 45) GAAAGAAA 1 chrX:17510676-17510796 ( 111) GAAAGAAA 1 chr2L:7544494-7544614 ( 54) GAAAGAAA 1 chr3L:1463800-1463920 ( 95) GAAAGAAA 1 chrX:19887338-19887458 ( 79) AAAAAAAA 1 chr3R:10656104-10656224 ( 83) AAAAAAAA 1 chr3L:1802921-1803041 ( 10) AAAAAAAA 1 chr3L:11247562-11247682 ( 44) CAAATACA 1 chr3L:12350477-12350597 ( 67) CAAATACA 1 chr3R:9055180-9055300 ( 77) GAAAAAAA 1 chr2R:16849541-16849661 ( 51) GAAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAASAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.49857 E= 2.9e+004 24 142 -120 -1271 179 -1271 -1271 -1271 179 -1271 -1271 -1271 179 -1271 -1271 -1271 -111 92 47 -71 179 -1271 -1271 -1271 118 -51 -8 -1271 179 -1271 -1271 -1271 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAASAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 67 E= 2.9e+004 0.343284 0.567164 0.089552 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.134328 0.402985 0.283582 0.179104 1.000000 0.000000 0.000000 0.000000 0.656716 0.149254 0.194030 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAASAAA MEME-1 regular expression -------------------------------------------------------------------------------- [CA]AAA[CG]AAA -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGGGAG MEME-2 width = 8 sites = 5 llr = 57 E-value = 4.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGGGAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C :::::2:: probability G a:aaa8:a matrix T :a:::::: bits 2.3 * *** * 2.1 * *** * 1.8 ***** ** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (16.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGGGGAG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11427441-11427561 35 6.28e-06 TGGAAGAGGG GTGGGGAG CGGAGATAGG chr3R:14714225-14714345 55 6.28e-06 AAGGAGCGAG GTGGGGAG CACTCGGCTG chr3R:17828862-17828982 5 6.28e-06 ATTT GTGGGGAG TGTGACTATG chr3L:20785222-20785342 70 6.28e-06 CGTGGAGATC GTGGGGAG TAGTAGAAAT chr3R:30767238-30767358 93 1.28e-05 AAAACTGTCA GTGGGCAG AGCTCATCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11427441-11427561 6.3e-06 34_[+2]_78 chr3R:14714225-14714345 6.3e-06 54_[+2]_58 chr3R:17828862-17828982 6.3e-06 4_[+2]_108 chr3L:20785222-20785342 6.3e-06 69_[+2]_43 chr3R:30767238-30767358 1.3e-05 92_[+2]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGGGAG width=8 seqs=5 chrX:11427441-11427561 ( 35) GTGGGGAG 1 chr3R:14714225-14714345 ( 55) GTGGGGAG 1 chr3R:17828862-17828982 ( 5) GTGGGGAG 1 chr3L:20785222-20785342 ( 70) GTGGGGAG 1 chr3R:30767238-30767358 ( 93) GTGGGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 4.4e+004 -897 -897 228 -897 -897 -897 -897 177 -897 -897 228 -897 -897 -897 228 -897 -897 -897 228 -897 -897 -9 196 -897 178 -897 -897 -897 -897 -897 228 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 4.4e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGAG MEME-2 regular expression -------------------------------------------------------------------------------- GTGGG[GC]AG -------------------------------------------------------------------------------- Time 13.65 secs. ******************************************************************************** ******************************************************************************** MOTIF GCWGWGBG MEME-3 width = 8 sites = 27 llr = 238 E-value = 1.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCWGWGBG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::6:3::: pos.-specific C :a::1:3: probability G a::a2a3a matrix T ::4:4:4: bits 2.3 ** * * * 2.1 ** * * * 1.8 ** * * * 1.6 ** * * * Relative 1.4 ** * * * Entropy 1.1 ** * * * (12.7 bits) 0.9 **** * * 0.7 **** * * 0.5 **** *** 0.2 **** *** 0.0 -------- Multilevel GCAGTGTG consensus T A G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGWGBG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:11247562-11247682 96 6.53e-06 GGTGCGGGGG GCAGTGGG AGGCTCGACT chrX:16278211-16278331 34 1.58e-05 GCAGGCTCGT GCAGTGTG CCCAGCTGGT chr3R:17828862-17828982 93 1.58e-05 CTCATTTGAG GCAGTGTG ATATTTACTT chr2R:9116414-9116534 112 1.58e-05 TTATTGATAA GCAGTGTG A chr3L:14776094-14776214 18 1.58e-05 GAAAAATGTT GCAGTGTG GCCGTTTCAG chrX:17465676-17465796 112 2.26e-05 CTTTTTTCTC GCAGTGCG G chr2R:11640878-11640998 61 2.92e-05 GACCAGACCA GCTGTGGG CGGGTCAGTG chrX:6614421-6614541 76 2.92e-05 GTATCTTTTC GCTGTGGG CGTAAACACA chr2R:10238137-10238257 105 2.92e-05 acacacTCGC GCTGTGGG ATGAAAAG chrX:16967540-16967660 89 4.96e-05 ACTGCACTCG GCAGGGGG CGCCACAACG chr3L:14956414-14956534 105 4.96e-05 CTAAGAAAAC GCAGAGGG AGACAAAC chrX:12654402-12654522 28 4.96e-05 TGCAACTGCA GCtgtgtg cgtgtgtgtg chr3R:8180465-8180585 83 4.96e-05 TGTATAGCGA GCTGTGTG CATTGCACTC chr2L:18881439-18881559 80 4.96e-05 CTGACGGCCT GCAGGGGG GGGGGAGTTC chr2R:20274425-20274545 99 6.54e-05 GTGTGCCCTT GCAGGGTG TGCGGATTAA chr2L:11203755-11203875 107 6.54e-05 TTCTCTGAGT GCAGGGTG CTGCTC chr3L:11540402-11540522 81 6.54e-05 GAGCTCGGTG GCAGAGTG TCAACGCTTT chr3L:21821869-21821989 86 6.54e-05 GTAACACCAT GCAGGGTG TCTGAGTTTC chrX:19887338-19887458 5 9.53e-05 GGCG GCAGAGCG CCAGTGCTGC chr3R:21499592-21499712 58 9.53e-05 CCATCGGCGG GCAGAGCG AAACCTGTTT chrX:19494411-19494531 48 9.53e-05 GCTGCAGAAC GCAGCGTG TATTTACAGT chr2L:3888283-3888403 34 1.32e-04 GTGTGTGTCT GCTGCGGG GCAAATGAAA chr2R:19413318-19413438 75 1.32e-04 ACACTTGTTT GCTGCGGG ACACACCCAT chr3R:14714225-14714345 69 1.50e-04 GGAGCACTCG GCTGAGCG CGAGCGAGAT chr3L:9698318-9698438 53 1.50e-04 AAATAGACGT GCTGAGCG CTGTAAAAAG chr2R:17420072-17420192 105 1.50e-04 CAATCAAACA GCTGAGCG CCTTGCGA chr3R:4714110-4714230 37 1.55e-04 ATTCAGCCAC GCTGCGCG TATGTTTTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGWGBG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:11247562-11247682 6.5e-06 95_[+3]_17 chrX:16278211-16278331 1.6e-05 33_[+3]_79 chr3R:17828862-17828982 1.6e-05 92_[+3]_20 chr2R:9116414-9116534 1.6e-05 111_[+3]_1 chr3L:14776094-14776214 1.6e-05 17_[+3]_95 chrX:17465676-17465796 2.3e-05 111_[+3]_1 chr2R:11640878-11640998 2.9e-05 60_[+3]_52 chrX:6614421-6614541 2.9e-05 75_[+3]_37 chr2R:10238137-10238257 2.9e-05 104_[+3]_8 chrX:16967540-16967660 5e-05 88_[+3]_24 chr3L:14956414-14956534 5e-05 104_[+3]_8 chrX:12654402-12654522 5e-05 27_[+3]_85 chr3R:8180465-8180585 5e-05 82_[+3]_30 chr2L:18881439-18881559 5e-05 79_[+3]_33 chr2R:20274425-20274545 6.5e-05 98_[+3]_14 chr2L:11203755-11203875 6.5e-05 106_[+3]_6 chr3L:11540402-11540522 6.5e-05 80_[+3]_32 chr3L:21821869-21821989 6.5e-05 85_[+3]_27 chrX:19887338-19887458 9.5e-05 4_[+3]_108 chr3R:21499592-21499712 9.5e-05 57_[+3]_55 chrX:19494411-19494531 9.5e-05 47_[+3]_65 chr2L:3888283-3888403 0.00013 33_[+3]_79 chr2R:19413318-19413438 0.00013 74_[+3]_38 chr3R:14714225-14714345 0.00015 68_[+3]_44 chr3L:9698318-9698438 0.00015 52_[+3]_60 chr2R:17420072-17420192 0.00015 104_[+3]_8 chr3R:4714110-4714230 0.00016 36_[+3]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGWGBG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCWGWGBG width=8 seqs=27 chr3L:11247562-11247682 ( 96) GCAGTGGG 1 chrX:16278211-16278331 ( 34) GCAGTGTG 1 chr3R:17828862-17828982 ( 93) GCAGTGTG 1 chr2R:9116414-9116534 ( 112) GCAGTGTG 1 chr3L:14776094-14776214 ( 18) GCAGTGTG 1 chrX:17465676-17465796 ( 112) GCAGTGCG 1 chr2R:11640878-11640998 ( 61) GCTGTGGG 1 chrX:6614421-6614541 ( 76) GCTGTGGG 1 chr2R:10238137-10238257 ( 105) GCTGTGGG 1 chrX:16967540-16967660 ( 89) GCAGGGGG 1 chr3L:14956414-14956534 ( 105) GCAGAGGG 1 chrX:12654402-12654522 ( 28) GCTGTGTG 1 chr3R:8180465-8180585 ( 83) GCTGTGTG 1 chr2L:18881439-18881559 ( 80) GCAGGGGG 1 chr2R:20274425-20274545 ( 99) GCAGGGTG 1 chr2L:11203755-11203875 ( 107) GCAGGGTG 1 chr3L:11540402-11540522 ( 81) GCAGAGTG 1 chr3L:21821869-21821989 ( 86) GCAGGGTG 1 chrX:19887338-19887458 ( 5) GCAGAGCG 1 chr3R:21499592-21499712 ( 58) GCAGAGCG 1 chrX:19494411-19494531 ( 48) GCAGCGTG 1 chr2L:3888283-3888403 ( 34) GCTGCGGG 1 chr2R:19413318-19413438 ( 75) GCTGCGGG 1 chr3R:14714225-14714345 ( 69) GCTGAGCG 1 chr3L:9698318-9698438 ( 53) GCTGAGCG 1 chr2R:17420072-17420192 ( 105) GCTGAGCG 1 chr3R:4714110-4714230 ( 37) GCTGCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGWGBG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6812 E= 1.1e+003 -1140 -1140 228 -1140 -1140 223 -1140 -1140 103 -1140 -1140 48 -1140 -1140 228 -1140 -16 -52 -15 48 -1140 -1140 228 -1140 -1140 29 70 48 -1140 -1140 228 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGWGBG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.1e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.592593 0.000000 0.000000 0.407407 0.000000 0.000000 1.000000 0.000000 0.259259 0.148148 0.185185 0.407407 0.000000 0.000000 1.000000 0.000000 0.000000 0.259259 0.333333 0.407407 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGWGBG MEME-3 regular expression -------------------------------------------------------------------------------- GC[AT]G[TA]G[TGC]G -------------------------------------------------------------------------------- Time 19.88 secs. ******************************************************************************** ******************************************************************************** MOTIF GCACGCAC MEME-4 width = 8 sites = 10 llr = 104 E-value = 1.5e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACGCAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 2:8:::a: pos.-specific C :9:a:a:a probability G 8:::a::: matrix T :12::::: bits 2.3 *** * 2.1 *** * 1.8 * ***** 1.6 * ***** Relative 1.4 ** ***** Entropy 1.1 ******** (15.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCACGCAC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACGCAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:14028615-14028735 63 7.27e-06 CCTGTGAGac gcacgcac acccgctcac chrX:7307662-7307782 90 7.27e-06 tcCCACTGCT GCACGCAC ACGaacaccc chr2R:17458377-17458497 23 7.27e-06 ACACAGACAC GCACGCAC GTACCGTACA chrX:10366114-10366234 71 7.27e-06 CAATTTGCGC GCACGCAC TACCGACACT chr3R:13660420-13660540 78 7.27e-06 GAAATGTACA GCACGCAC AATGAGAATG chr3L:12804869-12804989 55 7.27e-06 acatacacac gcacgcac acacGGACGA chr2R:13482283-13482403 81 1.46e-05 AGTTCCTCGT GCTCGCAC TTTTGTTGCG chr3L:10860197-10860317 23 2.49e-05 CCCATAATTG ACACGCAC ACAGGCAGAC chrX:4540643-4540763 62 3.49e-05 TTTCATATAG GTACGCAC ATAAATAAAG chr3R:15920866-15920986 24 4.52e-05 CTGCGCTGCG ACTCGCAC TCAGTTGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACGCAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14028615-14028735 7.3e-06 62_[+4]_50 chrX:7307662-7307782 7.3e-06 89_[+4]_23 chr2R:17458377-17458497 7.3e-06 22_[+4]_90 chrX:10366114-10366234 7.3e-06 70_[+4]_42 chr3R:13660420-13660540 7.3e-06 77_[+4]_35 chr3L:12804869-12804989 7.3e-06 54_[+4]_58 chr2R:13482283-13482403 1.5e-05 80_[+4]_32 chr3L:10860197-10860317 2.5e-05 22_[+4]_90 chrX:4540643-4540763 3.5e-05 61_[+4]_51 chr3R:15920866-15920986 4.5e-05 23_[+4]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACGCAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACGCAC width=8 seqs=10 chr3L:14028615-14028735 ( 63) GCACGCAC 1 chrX:7307662-7307782 ( 90) GCACGCAC 1 chr2R:17458377-17458497 ( 23) GCACGCAC 1 chrX:10366114-10366234 ( 71) GCACGCAC 1 chr3R:13660420-13660540 ( 78) GCACGCAC 1 chr3L:12804869-12804989 ( 55) GCACGCAC 1 chr2R:13482283-13482403 ( 81) GCTCGCAC 1 chr3L:10860197-10860317 ( 23) ACACGCAC 1 chrX:4540643-4540763 ( 62) GTACGCAC 1 chr3R:15920866-15920986 ( 24) ACTCGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACGCAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 1.5e+005 -54 -997 196 -997 -997 208 -997 -154 146 -997 -997 -55 -997 223 -997 -997 -997 -997 228 -997 -997 223 -997 -997 178 -997 -997 -997 -997 223 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACGCAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.5e+005 0.200000 0.000000 0.800000 0.000000 0.000000 0.900000 0.000000 0.100000 0.800000 0.000000 0.000000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACGCAC MEME-4 regular expression -------------------------------------------------------------------------------- [GA]C[AT]CGCAC -------------------------------------------------------------------------------- Time 26.01 secs. ******************************************************************************** ******************************************************************************** MOTIF AACAACAA MEME-5 width = 8 sites = 8 llr = 84 E-value = 8.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AACAACAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A aa:aa:aa pos.-specific C ::a::a:: probability G :::::::: matrix T :::::::: bits 2.3 * * 2.1 * * 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (15.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AACAACAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAACAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21183209-21183329 69 2.70e-05 ATGCATCGAT AACAACAA AAATCGTCAA chr3R:24050776-24050896 31 2.70e-05 ATCGTCAACC AACAACAA CCTGAGACAG chr3L:19897035-19897155 62 2.70e-05 GCACGACTGC AACAACAA CCGTGTGCCA chr3L:5789880-5790000 49 2.70e-05 TGTTCAGCTG AACAacaa ttttcgatca chr2R:21475067-21475187 6 2.70e-05 acaaa aacaacaa TGAAAAGCGG chr3R:31603734-31603854 13 2.70e-05 CGAATGGGTA AACAACAA TATATTAGAT chr3L:11003024-11003144 14 2.70e-05 TGCCAGAGGC AACAACAA AGCGGCTTAC chr2L:9497368-9497488 43 2.70e-05 acagagagCA AACAACAA CTTTTAACTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAACAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21183209-21183329 2.7e-05 68_[+5]_44 chr3R:24050776-24050896 2.7e-05 30_[+5]_82 chr3L:19897035-19897155 2.7e-05 61_[+5]_51 chr3L:5789880-5790000 2.7e-05 48_[+5]_64 chr2R:21475067-21475187 2.7e-05 5_[+5]_107 chr3R:31603734-31603854 2.7e-05 12_[+5]_100 chr3L:11003024-11003144 2.7e-05 13_[+5]_99 chr2L:9497368-9497488 2.7e-05 42_[+5]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAACAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AACAACAA width=8 seqs=8 chr2R:21183209-21183329 ( 69) AACAACAA 1 chr3R:24050776-24050896 ( 31) AACAACAA 1 chr3L:19897035-19897155 ( 62) AACAACAA 1 chr3L:5789880-5790000 ( 49) AACAACAA 1 chr2R:21475067-21475187 ( 6) AACAACAA 1 chr3R:31603734-31603854 ( 13) AACAACAA 1 chr3L:11003024-11003144 ( 14) AACAACAA 1 chr2L:9497368-9497488 ( 43) AACAACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAACAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 8.9e+004 178 -965 -965 -965 178 -965 -965 -965 -965 223 -965 -965 178 -965 -965 -965 178 -965 -965 -965 -965 223 -965 -965 178 -965 -965 -965 178 -965 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAACAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.9e+004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAACAA MEME-5 regular expression -------------------------------------------------------------------------------- AACAACAA -------------------------------------------------------------------------------- Time 32.21 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18837990-18838110 2.46e-01 120 chr2R:20590669-20590789 9.68e-01 120 chr3R:15963921-15964041 4.08e-01 120 chr2L:9911918-9912038 3.53e-01 120 chr3R:15920866-15920986 2.46e-01 23_[+4(4.52e-05)]_89 chrX:8141444-8141564 2.96e-02 120 chr3R:27289716-27289836 4.71e-01 120 chr3L:1802921-1803041 2.44e-01 120 chr3R:26859410-26859530 9.95e-01 120 chrX:10184798-10184918 7.00e-01 120 chr3R:10024206-10024326 8.03e-01 120 chrX:3136851-3136971 9.42e-02 120 chr2R:18609029-18609149 1.34e-01 82_[+1(2.70e-05)]_30 chr2L:22168568-22168688 6.81e-01 120 chrX:8409241-8409361 3.01e-01 120 chr2R:25183097-25183217 9.96e-01 120 chr3R:10100671-10100791 1.91e-01 120 chr2R:14482521-14482641 9.48e-01 120 chr3L:5654698-5654818 1.08e-01 120 chrX:3690780-3690900 1.00e+00 120 chr2R:7167961-7168081 2.45e-01 120 chr3L:14335901-14336021 7.94e-01 120 chrX:5889086-5889206 9.51e-01 120 chrX:4540643-4540763 1.52e-01 61_[+4(3.49e-05)]_51 chr2R:6133362-6133482 1.30e-02 120 chr2L:18881439-18881559 4.84e-03 86_[+2(2.81e-05)]_26 chr2L:22019062-22019182 1.28e-01 40_[+1(8.97e-05)]_72 chrX:17465676-17465796 7.66e-02 111_[+3(2.26e-05)]_1 chrX:8417119-8417239 5.15e-01 120 chrX:8720343-8720463 5.23e-01 120 chrX:8677538-8677658 8.07e-01 120 chr2L:9497368-9497488 1.54e-02 42_[+5(2.70e-05)]_70 chr3L:12804869-12804989 1.35e-02 54_[+4(7.27e-06)]_58 chr2L:14141356-14141476 4.29e-01 120 chr3R:30200198-30200318 5.00e-01 120 chr2R:22450430-22450550 5.01e-01 120 chr3L:11003024-11003144 2.66e-02 13_[+5(2.70e-05)]_99 chr3L:14776094-14776214 2.26e-02 17_[+3(1.58e-05)]_95 chr3L:10860197-10860317 2.22e-02 22_[+4(2.49e-05)]_90 chr2R:19413318-19413438 1.41e-01 120 chr3R:7129547-7129667 1.14e-02 120 chr2L:143230-143350 6.43e-01 120 chrX:13789074-13789194 7.61e-01 120 chrX:3779858-3779978 9.78e-01 120 chr2R:9116414-9116534 4.63e-02 111_[+3(1.58e-05)]_1 chrX:16103589-16103709 2.33e-01 120 chr3R:31603734-31603854 4.36e-02 12_[+5(2.70e-05)]_100 chr2L:5977552-5977672 6.12e-02 120 chr2R:22158064-22158184 2.13e-01 120 chr2L:15254327-15254447 1.89e-01 120 chr3L:19190888-19191008 9.99e-01 120 chr2R:23202163-23202283 9.92e-01 120 chr3R:20276139-20276259 5.99e-02 34_[+4(5.53e-05)]_78 chr3R:26867665-26867785 4.21e-01 120 chr2R:6603157-6603277 4.70e-02 111_[+1(2.70e-05)]_1 chrX:15319379-15319499 7.58e-01 120 chr2R:24132896-24133016 2.90e-01 120 chr3L:12350477-12350597 1.94e-01 120 chr2R:16849541-16849661 2.31e-01 120 chrX:7703102-7703222 3.81e-01 120 chrX:14749253-14749373 6.56e-01 120 chr2L:10276952-10277072 1.61e-01 120 chr2R:19874610-19874730 1.55e-01 3_[+1(5.30e-05)]_109 chr3R:10656104-10656224 3.14e-01 120 chr2R:21475067-21475187 2.68e-02 5_[+5(2.70e-05)]_107 chr2R:7071127-7071247 7.77e-01 120 chr2R:21082664-21082784 7.72e-02 120 chr3L:21821869-21821989 2.92e-02 85_[+3(6.54e-05)]_27 chr3L:4272320-4272440 2.14e-01 120 chr3R:13660420-13660540 6.57e-04 77_[+4(7.27e-06)]_35 chr2R:21141900-21142020 3.19e-02 55_[+1(8.97e-05)]_57 chr2R:10238137-10238257 6.21e-05 86_[+4(4.52e-05)]_10_[+3(2.92e-05)]_\ 8 chr3R:10598327-10598447 5.89e-02 120 chr2L:3888283-3888403 1.18e-02 93_[+1(5.30e-05)]_19 chrX:19494411-19494531 7.68e-02 47_[+3(9.53e-05)]_65 chrX:10366114-10366234 8.39e-02 70_[+4(7.27e-06)]_42 chr3R:23228765-23228885 4.24e-01 120 chr3R:10203703-10203823 8.31e-01 120 chr2L:8554409-8554529 9.87e-01 120 chrX:18900069-18900189 9.52e-01 120 chrX:12221656-12221776 7.55e-01 120 chr3L:1463800-1463920 2.57e-01 120 chr3L:7961375-7961495 1.21e-01 120 chr3R:16276352-16276472 4.97e-01 120 chr2L:7544494-7544614 1.79e-03 120 chr2L:7811460-7811580 9.63e-01 120 chr2R:10066626-10066746 8.83e-01 120 chrX:4498360-4498480 9.45e-01 120 chr2R:12025179-12025299 5.17e-01 120 chr2R:23180950-23181070 1.01e-01 120 chr2R:11198410-11198530 8.15e-03 120 chr3R:29068957-29069077 8.67e-01 120 chr3L:11540402-11540522 2.12e-01 80_[+3(6.54e-05)]_32 chr3L:17961715-17961835 4.10e-02 120 chr2R:18774940-18775060 4.99e-01 120 chr2L:8740216-8740336 6.48e-02 120 chr2L:3600979-3601099 8.01e-01 120 chr3L:12079093-12079213 2.68e-02 67_[+1(2.70e-05)]_45 chr3R:27440766-27440886 1.47e-01 120 chr3R:20574793-20574913 6.40e-01 120 chr2L:21619182-21619302 4.80e-01 120 chr3L:15565909-15566029 6.08e-01 120 chr2R:18811966-18812086 1.51e-01 120 chr2L:12108870-12108990 4.11e-01 120 chr2R:15922089-15922209 6.67e-01 120 chr2R:17420072-17420192 1.32e-01 120 chr3L:9698318-9698438 2.26e-03 16_[+1(8.97e-05)]_96 chrX:3862443-3862563 4.60e-01 120 chrX:16650534-16650654 1.66e-01 120 chrX:6279218-6279338 3.87e-01 120 chr2R:14769323-14769443 1.50e-02 57_[+1(8.97e-05)]_55 chr3L:5789880-5790000 3.12e-03 10_[+1(2.70e-05)]_30_[+5(2.70e-05)]_\ 64 chr2R:7735319-7735439 3.05e-01 120 chrX:13332948-13333068 1.67e-02 82_[+4(5.53e-05)]_16_[+1(5.30e-05)]_\ 6 chrX:5892195-5892315 3.81e-01 120 chr2R:6494351-6494471 7.06e-01 120 chr3R:30812684-30812804 3.65e-01 120 chr2L:18320111-18320231 5.73e-01 120 chr2L:19549611-19549731 3.88e-01 120 chr3R:5065112-5065232 4.34e-01 120 chr3L:20785222-20785342 2.43e-03 69_[+2(6.28e-06)]_43 chrX:1380481-1380601 3.30e-01 120 chr3R:20257414-20257534 6.02e-01 120 chr2L:5980989-5981109 4.39e-01 120 chrX:4262786-4262906 2.65e-01 120 chr3R:21499592-21499712 2.58e-02 57_[+3(9.53e-05)]_55 chr3L:21962006-21962126 5.35e-03 120 chr2R:17091770-17091890 2.36e-01 120 chr3L:8584213-8584333 2.32e-01 120 chr3R:29229241-29229361 6.94e-01 120 chr3R:8180465-8180585 8.87e-02 82_[+3(4.96e-05)]_30 chr3R:9039501-9039621 5.31e-01 120 chr2L:10488603-10488723 4.59e-01 120 chr2L:15762634-15762754 3.13e-02 120 chr3L:14190143-14190263 9.94e-01 120 chrX:12654402-12654522 2.90e-01 27_[+3(4.96e-05)]_85 chr2R:17097330-17097450 1.43e-01 1_[+4(8.36e-05)]_111 chr3R:17828862-17828982 5.96e-04 4_[+2(6.28e-06)]_80_[+3(1.58e-05)]_\ 20 chr3L:12116012-12116132 6.95e-01 120 chr3L:18765887-18766007 8.76e-02 120 chr2R:17458377-17458497 2.05e-04 22_[+4(7.27e-06)]_8_[+1(2.70e-05)]_\ 74 chr3R:23922135-23922255 7.66e-01 120 chr2R:18693245-18693365 9.69e-01 120 chr3R:14817900-14818020 2.85e-01 120 chr2R:16731270-16731390 1.91e-01 60_[+4(4.52e-05)]_52 chr2R:11809429-11809549 9.45e-01 120 chr2L:11203755-11203875 1.29e-01 106_[+3(6.54e-05)]_6 chr2R:7457773-7457893 6.21e-01 120 chr3R:30802294-30802414 3.42e-01 120 chr3R:28845310-28845430 2.80e-01 120 chr2R:13008269-13008389 8.05e-01 120 chrX:6615576-6615696 9.31e-01 120 chrX:21630011-21630131 8.57e-01 120 chrX:16278211-16278331 4.12e-02 33_[+3(1.58e-05)]_79 chr2L:18563075-18563195 9.93e-01 120 chr2R:20274425-20274545 3.78e-03 98_[+3(6.54e-05)]_14 chr2L:17583142-17583262 7.84e-01 120 chr3L:15729515-15729635 4.68e-01 120 chr2L:20715193-20715313 9.53e-01 120 chr2R:23970040-23970160 2.22e-02 120 chr3R:14714225-14714345 7.37e-03 54_[+2(6.28e-06)]_58 chr3R:20555148-20555268 9.96e-01 120 chr3R:30767238-30767358 8.68e-03 92_[+2(1.28e-05)]_20 chr3L:10745729-10745849 8.94e-01 120 chr2R:18536735-18536855 1.05e-01 120 chrX:7307662-7307782 3.58e-02 89_[+4(7.27e-06)]_23 chrX:2294685-2294805 1.41e-04 9_[+1(2.70e-05)]_88_[+2(4.34e-05)]_\ 7 chrX:19770239-19770359 5.39e-02 41_[+1(8.97e-05)]_71 chr2L:18136718-18136838 4.82e-02 120 chr2L:10565835-10565955 9.86e-01 120 chr2L:19377571-19377691 7.13e-01 120 chr3R:4821266-4821386 4.99e-01 120 chrX:7553480-7553600 5.37e-01 120 chrX:3357743-3357863 9.54e-01 120 chr3L:12803759-12803879 3.24e-01 120 chrX:16610685-16610805 6.87e-01 120 chr3L:11247562-11247682 1.40e-03 95_[+3(6.53e-06)]_17 chr2R:8242648-8242768 5.44e-02 120 chr3R:9701484-9701604 1.05e-01 93_[+1(2.70e-05)]_19 chr3L:129441-129561 1.01e-01 120 chr3L:5857100-5857220 8.30e-01 120 chr3R:21580190-21580310 7.81e-01 120 chrX:796493-796613 9.09e-02 120 chr2L:11206946-11207066 9.58e-02 120 chrX:6614421-6614541 1.79e-02 75_[+3(2.92e-05)]_37 chrX:18635414-18635534 5.73e-01 120 chr2L:3852296-3852416 8.26e-01 120 chr3L:14028615-14028735 2.29e-03 62_[+4(7.27e-06)]_26_[+4(3.49e-05)]_\ 16 chr3R:5758922-5759042 2.54e-01 120 chr3L:14956414-14956534 2.75e-02 104_[+3(4.96e-05)]_8 chr2R:11640878-11640998 5.02e-03 60_[+3(2.92e-05)]_52 chr3R:8563925-8564045 3.49e-02 101_[+1(5.30e-05)]_11 chr2R:21060533-21060653 3.50e-01 120 chrX:4366320-4366440 2.37e-01 120 chrX:16967540-16967660 1.24e-01 88_[+3(4.96e-05)]_24 chr3L:6752388-6752508 6.15e-01 120 chrX:17176693-17176813 9.16e-01 120 chrX:17510676-17510796 5.36e-01 120 chr2R:13926281-13926401 9.01e-01 120 chr3R:21850156-21850276 4.18e-02 120 chr3R:20593073-20593193 3.61e-01 120 chr3L:15532697-15532817 3.46e-02 82_[+1(2.70e-05)]_30 chr2R:12705163-12705283 7.90e-01 120 chrX:7015047-7015167 3.69e-01 120 chr3R:10696511-10696631 5.06e-01 120 chr3L:21516882-21517002 9.85e-01 120 chrX:19887338-19887458 1.26e-02 4_[+3(9.53e-05)]_108 chr3L:15691370-15691490 6.25e-01 120 chr2L:3042231-3042351 8.96e-01 120 chrX:5639251-5639371 9.24e-01 120 chr2L:10516917-10517037 9.92e-01 120 chr2R:25011303-25011423 3.23e-01 120 chr3L:8526239-8526359 6.80e-01 120 chr2L:3598571-3598691 2.33e-01 120 chr2R:21712069-21712189 8.13e-01 120 chr3R:24625564-24625684 9.61e-01 120 chr2L:1473630-1473750 8.66e-01 120 chr2R:15835447-15835567 7.37e-01 120 chr3R:25648119-25648239 4.22e-01 120 chr2L:10856633-10856753 8.86e-01 120 chr3L:19933099-19933219 7.51e-03 120 chr2R:24086537-24086657 4.65e-01 120 chr3L:19897035-19897155 4.94e-03 61_[+5(2.70e-05)]_51 chr3R:12426142-12426262 6.20e-03 120 chr3R:25885285-25885405 7.61e-02 39_[+1(2.70e-05)]_73 chr2L:22024593-22024713 2.66e-02 120 chr2R:13482283-13482403 5.87e-02 80_[+4(1.46e-05)]_32 chr2R:24593750-24593870 7.13e-01 120 chr3R:4714110-4714230 9.57e-02 120 chr2R:11095289-11095409 5.74e-01 120 chrX:11427441-11427561 6.03e-04 34_[+2(6.28e-06)]_78 chr2R:23176727-23176847 1.45e-01 120 chrX:3188575-3188695 9.08e-01 120 chr2L:1150694-1150814 1.45e-01 38_[+1(8.97e-05)]_74 chrX:4530038-4530158 5.75e-01 120 chr3L:12081703-12081823 6.33e-01 120 chr3R:9055180-9055300 7.82e-02 120 chr3R:24050776-24050896 4.52e-02 30_[+5(2.70e-05)]_82 chr3R:14625688-14625808 2.56e-01 120 chr3L:18114475-18114595 3.36e-01 120 chr3R:5076410-5076530 5.12e-01 120 chr3L:19000634-19000754 1.08e-01 120 chr2R:21183209-21183329 7.90e-03 68_[+5(2.70e-05)]_44 chr3R:20948102-20948222 9.37e-01 120 chr3L:1795351-1795471 9.98e-01 120 chrX:1370194-1370314 8.46e-01 120 chr2L:4394063-4394183 4.64e-01 120 chr3L:12062959-12063079 1.50e-01 120 chr2L:8535835-8535955 6.11e-02 120 chr2R:23092287-23092407 9.75e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************