******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Rel.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:8142874-8142994 1.0000 120 chr3L:15761725-15761845 1.0000 120 chr2R:10580917-10581037 1.0000 120 chr3R:21658400-21658520 1.0000 120 chr3L:8369097-8369217 1.0000 120 chr2R:14220863-14220983 1.0000 120 chr2L:73987-74107 1.0000 120 chr2R:13476289-13476409 1.0000 120 chr2R:23983065-23983185 1.0000 120 chr3R:20765440-20765560 1.0000 120 chr3R:27199001-27199121 1.0000 120 chrX:12891907-12892027 1.0000 120 chr2L:11965708-11965828 1.0000 120 chrX:6747351-6747471 1.0000 120 chr3R:16212348-16212468 1.0000 120 chr2R:13994279-13994399 1.0000 120 chr3R:15553604-15553724 1.0000 120 chr3L:3073257-3073377 1.0000 120 chr2L:11023716-11023836 1.0000 120 chr3R:20265963-20266083 1.0000 120 chr3L:13255342-13255462 1.0000 120 chr3L:12409541-12409661 1.0000 120 chr3L:10533601-10533721 1.0000 120 chr3R:16316853-16316973 1.0000 120 chr3R:7322715-7322835 1.0000 120 chr3R:30095528-30095648 1.0000 120 chrX:18974679-18974799 1.0000 120 chr2R:23815978-23816098 1.0000 120 chr3R:21024262-21024382 1.0000 120 chr2R:14315695-14315815 1.0000 120 chr3L:17002389-17002509 1.0000 120 chr3L:4353164-4353284 1.0000 120 chr2R:17509382-17509502 1.0000 120 chr3R:14398757-14398877 1.0000 120 chr2R:10874265-10874385 1.0000 120 chr3L:9477266-9477386 1.0000 120 chrX:13931679-13931799 1.0000 120 chr2R:7308952-7309072 1.0000 120 chr3L:6249329-6249449 1.0000 120 chr2R:19902530-19902650 1.0000 120 chrX:3151245-3151365 1.0000 120 chr2R:22261184-22261304 1.0000 120 chr3R:24137685-24137805 1.0000 120 chr3L:15212928-15213048 1.0000 120 chr2R:21553781-21553901 1.0000 120 chr3L:8652745-8652865 1.0000 120 chr3L:12387400-12387520 1.0000 120 chrX:4448846-4448966 1.0000 120 chr3L:21384645-21384765 1.0000 120 chr2R:21864266-21864386 1.0000 120 chrX:1613513-1613633 1.0000 120 chr2R:8737932-8738052 1.0000 120 chr3L:16216092-16216212 1.0000 120 chrX:11705391-11705511 1.0000 120 chr3L:8151910-8152030 1.0000 120 chr2R:14337678-14337798 1.0000 120 chr2L:438958-439078 1.0000 120 chr3L:9693658-9693778 1.0000 120 chr2L:7334336-7334456 1.0000 120 chrX:1271202-1271322 1.0000 120 chr2R:17852410-17852530 1.0000 120 chr2R:17099203-17099323 1.0000 120 chr3L:11320161-11320281 1.0000 120 chrX:10113683-10113803 1.0000 120 chr3R:7523834-7523954 1.0000 120 chr2L:4069232-4069352 1.0000 120 chr3L:15625024-15625144 1.0000 120 chr2L:20825339-20825459 1.0000 120 chrX:10547693-10547813 1.0000 120 chr2L:93023-93143 1.0000 120 chr2L:10506231-10506351 1.0000 120 chr2R:13955773-13955893 1.0000 120 chr3L:11369991-11370111 1.0000 120 chr3R:18445266-18445386 1.0000 120 chr3L:1457875-1457995 1.0000 120 chr3R:22590241-22590361 1.0000 120 chr3L:19900527-19900647 1.0000 120 chr2R:11453005-11453125 1.0000 120 chrX:2070363-2070483 1.0000 120 chr3R:10828817-10828937 1.0000 120 chrX:3772882-3773002 1.0000 120 chr3L:15547474-15547594 1.0000 120 chr2L:12620752-12620872 1.0000 120 chr2R:10537914-10538034 1.0000 120 chr2R:21707127-21707247 1.0000 120 chr3R:29282916-29283036 1.0000 120 chr2L:10500393-10500513 1.0000 120 chr3L:19694500-19694620 1.0000 120 chr2R:9551753-9551873 1.0000 120 chr3R:14363217-14363337 1.0000 120 chr3R:19064205-19064325 1.0000 120 chr2R:11098181-11098301 1.0000 120 chr2R:6501132-6501252 1.0000 120 chrX:17109808-17109928 1.0000 120 chrX:1566070-1566190 1.0000 120 chr2R:12917516-12917636 1.0000 120 chr3L:22191321-22191441 1.0000 120 chr3R:14677864-14677984 1.0000 120 chr2R:11205118-11205238 1.0000 120 chr3L:4414598-4414718 1.0000 120 chr3L:2805198-2805318 1.0000 120 chrX:22487063-22487183 1.0000 120 chrX:5915651-5915771 1.0000 120 chrX:12732533-12732653 1.0000 120 chr2R:18312360-18312480 1.0000 120 chr3L:6066049-6066169 1.0000 120 chr3L:2874218-2874338 1.0000 120 chr3R:9350850-9350970 1.0000 120 chr3L:22823404-22823524 1.0000 120 chr3L:19022115-19022235 1.0000 120 chrX:11817190-11817310 1.0000 120 chr3L:8825137-8825257 1.0000 120 chr3L:20688533-20688653 1.0000 120 chr3L:4107141-4107261 1.0000 120 chr2R:16154082-16154202 1.0000 120 chr3R:24608423-24608543 1.0000 120 chr3L:18007629-18007749 1.0000 120 chr2L:19322019-19322139 1.0000 120 chr3L:1828140-1828260 1.0000 120 chr3L:2766131-2766251 1.0000 120 chr2R:24046202-24046322 1.0000 120 chrX:19495780-19495900 1.0000 120 chr2L:14226489-14226609 1.0000 120 chrX:1622030-1622150 1.0000 120 chr2L:634884-635004 1.0000 120 chr3L:8825726-8825846 1.0000 120 chr2R:18291324-18291444 1.0000 120 chr2R:6505067-6505187 1.0000 120 chr3R:31682540-31682660 1.0000 120 chr3L:22389215-22389335 1.0000 120 chrX:12675303-12675423 1.0000 120 chr3R:12960424-12960544 1.0000 120 chr3R:17061854-17061974 1.0000 120 chr2R:8608077-8608197 1.0000 120 chrX:11495613-11495733 1.0000 120 chr3R:11868782-11868902 1.0000 120 chr2L:10226432-10226552 1.0000 120 chr3L:14618963-14619083 1.0000 120 chr3L:19696165-19696285 1.0000 120 chr3R:25472384-25472504 1.0000 120 chrX:15303740-15303860 1.0000 120 chr2R:8724728-8724848 1.0000 120 chr3L:8057990-8058110 1.0000 120 chr3L:3082008-3082128 1.0000 120 chr3R:19309348-19309468 1.0000 120 chr2R:6125448-6125568 1.0000 120 chr3R:24985280-24985400 1.0000 120 chr3L:10321992-10322112 1.0000 120 chr2L:18455743-18455863 1.0000 120 chr3R:29829509-29829629 1.0000 120 chr2R:6125242-6125362 1.0000 120 chr2R:14027276-14027396 1.0000 120 chr3R:31937492-31937612 1.0000 120 chr2R:18313066-18313186 1.0000 120 chr3R:20952462-20952582 1.0000 120 chr2R:11098386-11098506 1.0000 120 chr3L:3251398-3251518 1.0000 120 chr3R:18669281-18669401 1.0000 120 chr3R:28536840-28536960 1.0000 120 chr3R:27129870-27129990 1.0000 120 chr3R:5332140-5332260 1.0000 120 chr3R:30308453-30308573 1.0000 120 chrX:369867-369987 1.0000 120 chrX:11684572-11684692 1.0000 120 chr2R:23746104-23746224 1.0000 120 chr2R:7132508-7132628 1.0000 120 chrX:756891-757011 1.0000 120 chr3R:25329320-25329440 1.0000 120 chr3L:21644672-21644792 1.0000 120 chr2R:17804363-17804483 1.0000 120 chr3L:17958291-17958411 1.0000 120 chrX:15568559-15568679 1.0000 120 chr3L:14973395-14973515 1.0000 120 chr3L:1325508-1325628 1.0000 120 chr2L:14531463-14531583 1.0000 120 chr3L:17012107-17012227 1.0000 120 chrX:8231691-8231811 1.0000 120 chrX:1577259-1577379 1.0000 120 chr3R:31936360-31936480 1.0000 120 chrX:1578286-1578406 1.0000 120 chrX:16282145-16282265 1.0000 120 chr3L:16613182-16613302 1.0000 120 chr2R:18351166-18351286 1.0000 120 chr3L:2873224-2873344 1.0000 120 chr3L:8518811-8518931 1.0000 120 chrX:8230587-8230707 1.0000 120 chr2L:1116962-1117082 1.0000 120 chr3R:30526995-30527115 1.0000 120 chr3L:11280732-11280852 1.0000 120 chr2R:11206720-11206840 1.0000 120 chrX:16425170-16425290 1.0000 120 chr3L:16178600-16178720 1.0000 120 chr3L:18800574-18800694 1.0000 120 chr2R:21604094-21604214 1.0000 120 chr2R:24237598-24237718 1.0000 120 chr2R:19462434-19462554 1.0000 120 chr2L:5291197-5291317 1.0000 120 chr2R:21249764-21249884 1.0000 120 chr2L:19548266-19548386 1.0000 120 chr3R:31777928-31778048 1.0000 120 chr2R:7370385-7370505 1.0000 120 chr2R:24630824-24630944 1.0000 120 chr2L:3158996-3159116 1.0000 120 chrX:10021979-10022099 1.0000 120 chrX:2012346-2012466 1.0000 120 chrX:22855285-22855405 1.0000 120 chr3L:17922861-17922981 1.0000 120 chr3L:21108664-21108784 1.0000 120 chr2R:7727581-7727701 1.0000 120 chr2R:6631493-6631613 1.0000 120 chr3R:15293118-15293238 1.0000 120 chr2L:11155796-11155916 1.0000 120 chrX:15813412-15813532 1.0000 120 chr2R:12946309-12946429 1.0000 120 chr3R:16254745-16254865 1.0000 120 chrX:13747467-13747587 1.0000 120 chr2R:14433357-14433477 1.0000 120 chr2R:14967547-14967667 1.0000 120 chr3L:2833828-2833948 1.0000 120 chr3R:21837500-21837620 1.0000 120 chr2L:10794157-10794277 1.0000 120 chr3L:319339-319459 1.0000 120 chr3R:7497515-7497635 1.0000 120 chr3L:17965280-17965400 1.0000 120 chr3L:2818089-2818209 1.0000 120 chr2R:10736370-10736490 1.0000 120 chr3L:11788914-11789034 1.0000 120 chr3L:2151754-2151874 1.0000 120 chr2L:5209482-5209602 1.0000 120 chrX:16372686-16372806 1.0000 120 chr2L:182939-183059 1.0000 120 chr3R:10133757-10133877 1.0000 120 chr2R:22179450-22179570 1.0000 120 chr3R:24564923-24565043 1.0000 120 chr2R:6562882-6563002 1.0000 120 chr3R:24105099-24105219 1.0000 120 chr2R:22553991-22554111 1.0000 120 chr3R:16232620-16232740 1.0000 120 chr3R:7967861-7967981 1.0000 120 chr3L:7951937-7952057 1.0000 120 chr2R:11384210-11384330 1.0000 120 chr3L:18013358-18013478 1.0000 120 chr3R:24603786-24603906 1.0000 120 chr3L:21252672-21252792 1.0000 120 chr3R:23220388-23220508 1.0000 120 chr3L:5627957-5628077 1.0000 120 chr2L:170452-170572 1.0000 120 chr2L:11738766-11738886 1.0000 120 chr3L:9468049-9468169 1.0000 120 chr3L:346892-347012 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Rel/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Rel.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.307 C 0.21 G 0.208 T 0.276 Background letter frequencies (from file dataset with add-one prior applied): A 0.307 C 0.21 G 0.208 T 0.276 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAMAAAAA MEME-1 width = 8 sites = 94 llr = 723 E-value = 5.8e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAMAAAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A aa6898aa pos.-specific C ::41:2:: probability G ::::1::: matrix T :::1:::: bits 2.3 2.0 1.8 ** ** 1.6 ** ** Relative 1.4 ** * ** Entropy 1.1 ** * ** (11.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMAAAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9468049-9468169 31 7.89e-05 TAAGTTTGCa aaaaaaaa acaaggaaaa chr2R:22553991-22554111 35 7.89e-05 CGACAAAGAA AAAAAAAA AGAACGCGAC chr3R:10133757-10133877 3 7.89e-05 AC AAAAAAAA TTACTTCACA chr2L:10794157-10794277 50 7.89e-05 acaaaaaaca aaaaaaaa agcaagacaa chr2R:14433357-14433477 59 7.89e-05 aaaacaaaaa aaaaaaaa acaaaaacac chr2R:21249764-21249884 55 7.89e-05 CCTGGGCTAA AAAAAAAA TGCTAAACTA chr2R:21604094-21604214 29 7.89e-05 aaaaaaaacg aaaaaaaa gcgaaaaaac chrX:16282145-16282265 39 7.89e-05 GATGATCCGA AAAAAAAA CGTTTTTTCC chrX:12675303-12675423 90 7.89e-05 agaaaaaaag aaaaaaaa aatatatata chr2R:18291324-18291444 45 7.89e-05 CCACGAACGa aaaaaaaa agttaaagag chr2L:19322019-19322139 51 7.89e-05 AGTGAGCCAA AAAAAAAA GCCCCCAAGT chr3R:24608423-24608543 52 7.89e-05 AGTGAACAAC AAAAAAAA AAAGAACCGA chr2R:16154082-16154202 25 7.89e-05 TCTGGCATGa aaaaaaaa gtaataaacg chr3L:2874218-2874338 64 7.89e-05 GCAGCGAGGA AAAAAAAA CACAAAATGT chr2R:18312360-18312480 62 7.89e-05 GGGAAAGACA AAAAAAAA AAAGAAGAAA chrX:12732533-12732653 69 7.89e-05 ATCCAAATCa aaaaaaaa taataatact chrX:1566070-1566190 55 7.89e-05 aataaattga aaaaaaaa aaaaacgaaa chrX:17109808-17109928 60 7.89e-05 GAGCTCAAAA AAAAAAAA AGGCACGCGA chr3R:19064205-19064325 75 7.89e-05 CAGCTCGCCA AAAAAAAA CATCCTTTTT chr3L:15625024-15625144 77 7.89e-05 CAAAAGCCAA AAAAAAAA AAAACATAAG chr2L:4069232-4069352 26 7.89e-05 CTGCTGTTGC AAAAAAAA AGTTGCCTTT chr3R:7523834-7523954 18 7.89e-05 AATATTATAG AAAAAAAA TATACTACAT chr2L:7334336-7334456 66 7.89e-05 CGCGGGGCCa aaaaaaaa aaaaaacaaa chr2R:21864266-21864386 49 7.89e-05 TATATATATA AAAAAAAA GCGCTTATTT chr3L:21384645-21384765 14 7.89e-05 ACGCCAAAAA AAAAAAAA CGACAAAAAC chrX:4448846-4448966 33 7.89e-05 tgctgctgca aaaaaaaa aaaaaaaaaa chr2R:21553781-21553901 67 7.89e-05 aaaagtaaaa aaaaaaaa taaataaaaC chrX:13931679-13931799 21 7.89e-05 GGCGaaaaaa aaaaaaaa gaaaaaaaaT chr3L:4353164-4353284 51 7.89e-05 AATAATAATA AAAAAAAA CGTTATTATA chr3R:21024262-21024382 74 7.89e-05 tataaaagaa aaaaaaaa aagaaaGCAG chr3R:20265963-20266083 29 7.89e-05 GTCGCCCAAA AAAAAAAA AATAAAGCAA chr2L:11965708-11965828 77 7.89e-05 GCAAAAGCCA AAAAAAAA AAATGAATAA chr3R:27199001-27199121 55 7.89e-05 AAGATCCCTa aaaaaaaa aaaaataaaa chr3R:20765440-20765560 81 7.89e-05 aaaatcagcc aaaaaaaa accaaacaaa chr3L:15761725-15761845 34 7.89e-05 ATTTCCATAC AAAAAAAA ATACACAAAG chr2L:8142874-8142994 45 7.89e-05 CTGCCCCAAA AAAAAAAA AGATTGCCAT chr3R:15293118-15293238 41 1.33e-04 AGGGCAATAA AACAAAAA CGAAAAACGC chrX:2012346-2012466 99 1.33e-04 gaatgaaagg aacaaaaa ggaaaagaaa chr2R:7370385-7370505 81 1.33e-04 AAGCTCTGCG AACAAAAA CACGCAGAAC chr3L:8518811-8518931 32 1.33e-04 TTAAAACACA AACAAAAA ACTTTATATA chrX:15568559-15568679 104 1.33e-04 agaagaaaaa aacaaaaa CCGAAAGCC chrX:15303740-15303860 112 1.33e-04 aaaaaataaa aacaaaaa a chr3L:2766131-2766251 93 1.33e-04 TATATAAATA AACAAAAA AGAAGCAGAA chr2R:11098181-11098301 15 1.33e-04 TTGATGGGCa aacaaaaa ataaataaaa chr3L:15547474-15547594 3 1.33e-04 AC AACAAAAA TATATTGCAT chrX:3772882-3773002 113 1.33e-04 gcaaacggcg aacaaaaa chrX:1271202-1271322 83 1.33e-04 aaacaaaatt aacaaaaa acattgtaca chr2L:438958-439078 52 1.33e-04 ACATAAAACG AACAAAAA GGCAGGGAAC chr3L:16216092-16216212 110 1.33e-04 cagaatgcaa aaCAAAAA CGG chr2R:19902530-19902650 40 1.33e-04 GAATAACTCG AACAAAAA ATCAAATGGA chr3L:6249329-6249449 51 1.33e-04 TCATTTTTTG AACAAAAA CCTGTTTTCA chr2R:7308952-7309072 32 1.33e-04 CATTTTGCAC AACAAAAA GCGAGCTAAA chr3L:9477266-9477386 11 1.33e-04 CAGAGGCAGC AACAAAAA CGCTATTCGT chr2R:14315695-14315815 55 1.33e-04 TGAAGGCTCC AACAAAAA TCGACCAAAA chr2R:23815978-23816098 46 1.33e-04 ACATGGTAAA AACAAAAA CAAAACGGCG chr3L:11788914-11789034 79 1.87e-04 ATAAATATAT AAAAACAA ACAAAAGCGG chr2R:10736370-10736490 15 1.87e-04 CGAAAGACGG AAAAACAA TCGTCGGTTC chrX:1578286-1578406 75 1.87e-04 TACAAAAGTC AAAAACAA CAACGGCGAA chr2R:6125448-6125568 75 1.87e-04 GCAACAACAC AAAAACAA TGCAAACAGG chrX:11817190-11817310 84 1.87e-04 cagcagcaga aaaaacaa caacgataac chr3L:19900527-19900647 107 1.87e-04 TATAGTCCAG AAAAACAA CAACAA chr3L:3073257-3073377 102 1.87e-04 AAACAAACGC AAAAACAA AGCGTAACGA chr2R:13476289-13476409 59 1.87e-04 AAAGAACCGA AAAAACAA GGTATAAAGA chr2R:14967547-14967667 82 2.24e-04 CACGAGcaac aacaacaa cagcgacaac chrX:13747467-13747587 70 2.24e-04 AAACAAAACA AACAACAA CAATGGCAAA chr3L:16178600-16178720 68 2.24e-04 ccgcaacaac aacaacaa cgtcagcaaa chrX:1577259-1577379 77 2.24e-04 caaaacaaac aacaacaa aaGCTGCACT chr2R:14027276-14027396 57 2.24e-04 cagcagcagc aacaacaa caGTATCGAA chrX:5915651-5915771 113 2.24e-04 CGAGAATGAC AACAACAA chr2L:14531463-14531583 113 2.95e-04 ATTGTGTAAA AAATAAAA chr2R:8724728-8724848 82 2.95e-04 TTGCATCCAT AAATAAAA GAGTGCTGCT chrX:11495613-11495733 113 2.95e-04 CAGGCGTATG AAATAAAA chr3L:22823404-22823524 84 2.95e-04 GCAAAAAAGC AAATAAAA ATTGCAAATG chr3R:14677864-14677984 2 2.95e-04 T AAATAAAA CTTTGGCCCG chr2R:12917516-12917636 2 2.95e-04 A AAATAAAA CTAAGCAACG chr3R:21658400-21658520 55 2.95e-04 ACCAAATACA AAATAAAA TGAATAAAAA chr2R:11098386-11098506 58 3.48e-04 CAAAAAAGCC AAAAGAAA ATAATAAATA chr3L:8825137-8825257 3 3.48e-04 ta aaaagaaa ttaaaataaa chr2R:9551753-9551873 51 3.48e-04 GACGAAAATT AAAAGAAA TCACATGCAA chr3R:7322715-7322835 85 3.48e-04 aagaaatgaa aaaagaaa aagaacgaaa chr2L:10226432-10226552 64 3.97e-04 CATTACGGCG AACTAAAA CTTCAAACTG chr3L:1457875-1457995 81 3.97e-04 GTGGGCCTGG AACTAAAA GCGGAGATGG chr3L:5627957-5628077 42 4.33e-04 CAGAGTCCGA AACAGAAA CCGAAAGATA chr3R:19309348-19309468 48 4.33e-04 CGTGGCCCAA AACAGAAA ACAGATTCCC chr3L:12409541-12409661 47 4.33e-04 TGTCGTCGTC AACAGAAA ACATGTTtaa chr2R:11453005-11453125 24 4.87e-04 AGTTCTGTAC AAACAAAA TGTTAGCTAA chr3R:22590241-22590361 109 4.87e-04 GGTCTCGaac aaacaaaa caac chr3L:21644672-21644792 56 5.24e-04 GGGCCAAAAA AACCAAAA CAAGATCAAC chr3R:31937492-31937612 34 5.24e-04 GACTCGTGCT AACCAAAA TAAAGCAACA chr2R:22261184-22261304 21 5.24e-04 AAACTTTGTT AACCAAAA GGAATAAAAA chr3L:346892-347012 59 5.78e-04 TTGAACGGAA AAAAAGAA TGAATGTTGA chr3L:18007629-18007749 107 5.78e-04 TTAGTGAGAC AAAAAGAA TATATA chr3L:19022115-19022235 33 5.78e-04 CTTGTCGGCG AAAAAGAA CCAGTAGCCG chr3R:20952462-20952582 87 6.63e-04 gttttaattt aaatacaa tttaatACGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMAAAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9468049-9468169 7.9e-05 30_[+1]_82 chr2R:22553991-22554111 7.9e-05 34_[+1]_78 chr3R:10133757-10133877 7.9e-05 2_[+1]_110 chr2L:10794157-10794277 7.9e-05 49_[+1]_63 chr2R:14433357-14433477 7.9e-05 58_[+1]_54 chr2R:21249764-21249884 7.9e-05 54_[+1]_58 chr2R:21604094-21604214 7.9e-05 28_[+1]_84 chrX:16282145-16282265 7.9e-05 38_[+1]_74 chrX:12675303-12675423 7.9e-05 89_[+1]_23 chr2R:18291324-18291444 7.9e-05 44_[+1]_68 chr2L:19322019-19322139 7.9e-05 50_[+1]_62 chr3R:24608423-24608543 7.9e-05 51_[+1]_61 chr2R:16154082-16154202 7.9e-05 24_[+1]_88 chr3L:2874218-2874338 7.9e-05 63_[+1]_49 chr2R:18312360-18312480 7.9e-05 61_[+1]_51 chrX:12732533-12732653 7.9e-05 68_[+1]_44 chrX:1566070-1566190 7.9e-05 54_[+1]_58 chrX:17109808-17109928 7.9e-05 59_[+1]_53 chr3R:19064205-19064325 7.9e-05 74_[+1]_38 chr3L:15625024-15625144 7.9e-05 76_[+1]_36 chr2L:4069232-4069352 7.9e-05 25_[+1]_87 chr3R:7523834-7523954 7.9e-05 17_[+1]_95 chr2L:7334336-7334456 7.9e-05 65_[+1]_47 chr2R:21864266-21864386 7.9e-05 48_[+1]_64 chr3L:21384645-21384765 7.9e-05 13_[+1]_99 chrX:4448846-4448966 7.9e-05 32_[+1]_80 chr2R:21553781-21553901 7.9e-05 66_[+1]_46 chrX:13931679-13931799 7.9e-05 20_[+1]_92 chr3L:4353164-4353284 7.9e-05 50_[+1]_62 chr3R:21024262-21024382 7.9e-05 73_[+1]_39 chr3R:20265963-20266083 7.9e-05 28_[+1]_84 chr2L:11965708-11965828 7.9e-05 76_[+1]_36 chr3R:27199001-27199121 7.9e-05 54_[+1]_58 chr3R:20765440-20765560 7.9e-05 80_[+1]_32 chr3L:15761725-15761845 7.9e-05 33_[+1]_79 chr2L:8142874-8142994 7.9e-05 44_[+1]_68 chr3R:15293118-15293238 0.00013 40_[+1]_72 chrX:2012346-2012466 0.00013 98_[+1]_14 chr2R:7370385-7370505 0.00013 80_[+1]_32 chr3L:8518811-8518931 0.00013 31_[+1]_81 chrX:15568559-15568679 0.00013 103_[+1]_9 chrX:15303740-15303860 0.00013 111_[+1]_1 chr3L:2766131-2766251 0.00013 92_[+1]_20 chr2R:11098181-11098301 0.00013 14_[+1]_98 chr3L:15547474-15547594 0.00013 2_[+1]_110 chrX:3772882-3773002 0.00013 112_[+1] chrX:1271202-1271322 0.00013 82_[+1]_30 chr2L:438958-439078 0.00013 51_[+1]_61 chr3L:16216092-16216212 0.00013 109_[+1]_3 chr2R:19902530-19902650 0.00013 39_[+1]_73 chr3L:6249329-6249449 0.00013 50_[+1]_62 chr2R:7308952-7309072 0.00013 31_[+1]_81 chr3L:9477266-9477386 0.00013 10_[+1]_102 chr2R:14315695-14315815 0.00013 54_[+1]_58 chr2R:23815978-23816098 0.00013 45_[+1]_67 chr3L:11788914-11789034 0.00019 78_[+1]_34 chr2R:10736370-10736490 0.00019 14_[+1]_98 chrX:1578286-1578406 0.00019 74_[+1]_38 chr2R:6125448-6125568 0.00019 74_[+1]_38 chrX:11817190-11817310 0.00019 83_[+1]_29 chr3L:19900527-19900647 0.00019 106_[+1]_6 chr3L:3073257-3073377 0.00019 101_[+1]_11 chr2R:13476289-13476409 0.00019 58_[+1]_54 chr2R:14967547-14967667 0.00022 81_[+1]_31 chrX:13747467-13747587 0.00022 69_[+1]_43 chr3L:16178600-16178720 0.00022 67_[+1]_45 chrX:1577259-1577379 0.00022 76_[+1]_36 chr2R:14027276-14027396 0.00022 56_[+1]_56 chrX:5915651-5915771 0.00022 112_[+1] chr2L:14531463-14531583 0.00029 112_[+1] chr2R:8724728-8724848 0.00029 81_[+1]_31 chrX:11495613-11495733 0.00029 112_[+1] chr3L:22823404-22823524 0.00029 83_[+1]_29 chr3R:14677864-14677984 0.00029 1_[+1]_111 chr2R:12917516-12917636 0.00029 1_[+1]_111 chr3R:21658400-21658520 0.00029 54_[+1]_58 chr2R:11098386-11098506 0.00035 57_[+1]_55 chr3L:8825137-8825257 0.00035 2_[+1]_110 chr2R:9551753-9551873 0.00035 50_[+1]_62 chr3R:7322715-7322835 0.00035 84_[+1]_28 chr2L:10226432-10226552 0.0004 63_[+1]_49 chr3L:1457875-1457995 0.0004 80_[+1]_32 chr3L:5627957-5628077 0.00043 41_[+1]_71 chr3R:19309348-19309468 0.00043 47_[+1]_65 chr3L:12409541-12409661 0.00043 46_[+1]_66 chr2R:11453005-11453125 0.00049 23_[+1]_89 chr3R:22590241-22590361 0.00049 108_[+1]_4 chr3L:21644672-21644792 0.00052 55_[+1]_57 chr3R:31937492-31937612 0.00052 33_[+1]_79 chr2R:22261184-22261304 0.00052 20_[+1]_92 chr3L:346892-347012 0.00058 58_[+1]_54 chr3L:18007629-18007749 0.00058 106_[+1]_6 chr3L:19022115-19022235 0.00058 32_[+1]_80 chr3R:20952462-20952582 0.00066 86_[+1]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMAAAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAMAAAAA width=8 seqs=94 chr3L:9468049-9468169 ( 31) AAAAAAAA 1 chr2R:22553991-22554111 ( 35) AAAAAAAA 1 chr3R:10133757-10133877 ( 3) AAAAAAAA 1 chr2L:10794157-10794277 ( 50) AAAAAAAA 1 chr2R:14433357-14433477 ( 59) AAAAAAAA 1 chr2R:21249764-21249884 ( 55) AAAAAAAA 1 chr2R:21604094-21604214 ( 29) AAAAAAAA 1 chrX:16282145-16282265 ( 39) AAAAAAAA 1 chrX:12675303-12675423 ( 90) AAAAAAAA 1 chr2R:18291324-18291444 ( 45) AAAAAAAA 1 chr2L:19322019-19322139 ( 51) AAAAAAAA 1 chr3R:24608423-24608543 ( 52) AAAAAAAA 1 chr2R:16154082-16154202 ( 25) AAAAAAAA 1 chr3L:2874218-2874338 ( 64) AAAAAAAA 1 chr2R:18312360-18312480 ( 62) AAAAAAAA 1 chrX:12732533-12732653 ( 69) AAAAAAAA 1 chrX:1566070-1566190 ( 55) AAAAAAAA 1 chrX:17109808-17109928 ( 60) AAAAAAAA 1 chr3R:19064205-19064325 ( 75) AAAAAAAA 1 chr3L:15625024-15625144 ( 77) AAAAAAAA 1 chr2L:4069232-4069352 ( 26) AAAAAAAA 1 chr3R:7523834-7523954 ( 18) AAAAAAAA 1 chr2L:7334336-7334456 ( 66) AAAAAAAA 1 chr2R:21864266-21864386 ( 49) AAAAAAAA 1 chr3L:21384645-21384765 ( 14) AAAAAAAA 1 chrX:4448846-4448966 ( 33) AAAAAAAA 1 chr2R:21553781-21553901 ( 67) AAAAAAAA 1 chrX:13931679-13931799 ( 21) AAAAAAAA 1 chr3L:4353164-4353284 ( 51) AAAAAAAA 1 chr3R:21024262-21024382 ( 74) AAAAAAAA 1 chr3R:20265963-20266083 ( 29) AAAAAAAA 1 chr2L:11965708-11965828 ( 77) AAAAAAAA 1 chr3R:27199001-27199121 ( 55) AAAAAAAA 1 chr3R:20765440-20765560 ( 81) AAAAAAAA 1 chr3L:15761725-15761845 ( 34) AAAAAAAA 1 chr2L:8142874-8142994 ( 45) AAAAAAAA 1 chr3R:15293118-15293238 ( 41) AACAAAAA 1 chrX:2012346-2012466 ( 99) AACAAAAA 1 chr2R:7370385-7370505 ( 81) AACAAAAA 1 chr3L:8518811-8518931 ( 32) AACAAAAA 1 chrX:15568559-15568679 ( 104) AACAAAAA 1 chrX:15303740-15303860 ( 112) AACAAAAA 1 chr3L:2766131-2766251 ( 93) AACAAAAA 1 chr2R:11098181-11098301 ( 15) AACAAAAA 1 chr3L:15547474-15547594 ( 3) AACAAAAA 1 chrX:3772882-3773002 ( 113) AACAAAAA 1 chrX:1271202-1271322 ( 83) AACAAAAA 1 chr2L:438958-439078 ( 52) AACAAAAA 1 chr3L:16216092-16216212 ( 110) AACAAAAA 1 chr2R:19902530-19902650 ( 40) AACAAAAA 1 chr3L:6249329-6249449 ( 51) AACAAAAA 1 chr2R:7308952-7309072 ( 32) AACAAAAA 1 chr3L:9477266-9477386 ( 11) AACAAAAA 1 chr2R:14315695-14315815 ( 55) AACAAAAA 1 chr2R:23815978-23816098 ( 46) AACAAAAA 1 chr3L:11788914-11789034 ( 79) AAAAACAA 1 chr2R:10736370-10736490 ( 15) AAAAACAA 1 chrX:1578286-1578406 ( 75) AAAAACAA 1 chr2R:6125448-6125568 ( 75) AAAAACAA 1 chrX:11817190-11817310 ( 84) AAAAACAA 1 chr3L:19900527-19900647 ( 107) AAAAACAA 1 chr3L:3073257-3073377 ( 102) AAAAACAA 1 chr2R:13476289-13476409 ( 59) AAAAACAA 1 chr2R:14967547-14967667 ( 82) AACAACAA 1 chrX:13747467-13747587 ( 70) AACAACAA 1 chr3L:16178600-16178720 ( 68) AACAACAA 1 chrX:1577259-1577379 ( 77) AACAACAA 1 chr2R:14027276-14027396 ( 57) AACAACAA 1 chrX:5915651-5915771 ( 113) AACAACAA 1 chr2L:14531463-14531583 ( 113) AAATAAAA 1 chr2R:8724728-8724848 ( 82) AAATAAAA 1 chrX:11495613-11495733 ( 113) AAATAAAA 1 chr3L:22823404-22823524 ( 84) AAATAAAA 1 chr3R:14677864-14677984 ( 2) AAATAAAA 1 chr2R:12917516-12917636 ( 2) AAATAAAA 1 chr3R:21658400-21658520 ( 55) AAATAAAA 1 chr2R:11098386-11098506 ( 58) AAAAGAAA 1 chr3L:8825137-8825257 ( 3) AAAAGAAA 1 chr2R:9551753-9551873 ( 51) AAAAGAAA 1 chr3R:7322715-7322835 ( 85) AAAAGAAA 1 chr2L:10226432-10226552 ( 64) AACTAAAA 1 chr3L:1457875-1457995 ( 81) AACTAAAA 1 chr3L:5627957-5628077 ( 42) AACAGAAA 1 chr3R:19309348-19309468 ( 48) AACAGAAA 1 chr3L:12409541-12409661 ( 47) AACAGAAA 1 chr2R:11453005-11453125 ( 24) AAACAAAA 1 chr3R:22590241-22590361 ( 109) AAACAAAA 1 chr3L:21644672-21644792 ( 56) AACCAAAA 1 chr3R:31937492-31937612 ( 34) AACCAAAA 1 chr2R:22261184-22261304 ( 21) AACCAAAA 1 chr3L:346892-347012 ( 59) AAAAAGAA 1 chr3L:18007629-18007749 ( 107) AAAAAGAA 1 chr3L:19022115-19022235 ( 33) AAAAAGAA 1 chr3R:20952462-20952582 ( 87) AAATACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMAAAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.8025 E= 5.8e-029 170 -1320 -1320 -1320 170 -1320 -1320 -1320 108 74 -1320 -1320 145 -198 -1320 -137 159 -1320 -148 -1320 140 -39 -270 -1320 170 -1320 -1320 -1320 170 -1320 -1320 -1320 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMAAAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 94 E= 5.8e-029 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.648936 0.351064 0.000000 0.000000 0.840426 0.053191 0.000000 0.106383 0.925532 0.000000 0.074468 0.000000 0.808511 0.159574 0.031915 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMAAAAA MEME-1 regular expression -------------------------------------------------------------------------------- AA[AC]AAAAA -------------------------------------------------------------------------------- Time 7.45 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTKTKTK MEME-2 width = 8 sites = 110 llr = 778 E-value = 2.6e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTKTKTK MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::1:::1: probability G :3:413:6 matrix T a7869794 bits 2.3 2.0 1.8 * 1.6 * * Relative 1.4 * * * Entropy 1.1 ******** (10.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTG consensus G G G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTKTK MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:24105099-24105219 72 1.91e-05 ACTCGGCGAA TTTGTTTG TTTCACTTTc chr3L:16613182-16613302 33 1.91e-05 AAACTGCTGA TTTGTTTG GCTGTTATCT chr2R:6505067-6505187 10 1.91e-05 TTTATTTAT TTTGTTtg tttctgtttc chr2R:11453005-11453125 97 1.91e-05 ATTCGCCGCG TTTGTTTG AGATGTGTGT chr3L:15625024-15625144 48 1.91e-05 TACCGCGTGC TTTGTTTG GGAGATTGTG chrX:18974679-18974799 56 1.91e-05 CTCTTGCCGT TTTGTTTG TTTTTGTGTC chr3R:23220388-23220508 36 4.45e-05 CACCTCAAAT TTTTTTTG GATGATGAGA chr3R:7967861-7967981 99 4.45e-05 AGTTCGCGTG TTTTTTTG CGAATCTCTG chr3L:17922861-17922981 59 4.45e-05 TTCATTCCTT TTTTTTTG TGAGACGGAC chrX:2012346-2012466 34 4.45e-05 tattattatt tttttttg tttgttGCTA chrX:10021979-10022099 9 4.45e-05 TTTCGATG TTTTTTTG GTCGGCCTGT chr2R:11206720-11206840 94 4.45e-05 tatttatttt tttttttG CGGTCGCACG chrX:8230587-8230707 64 4.45e-05 GGCCGCAATT TTTTTTTG TTGATTTTTT chrX:1578286-1578406 102 4.45e-05 ATTCTGTGTG TTTTTTTG GCAGTCATTG chr3R:31936360-31936480 66 4.45e-05 tcgttctttt tttttttg ttGGCAACGC chrX:11684572-11684692 3 4.45e-05 tt tttttttG TGTCATACGG chr3R:30308453-30308573 66 4.45e-05 GATTTTTTCT TTTTTTTG CCTTATATTG chr3R:18669281-18669401 100 4.45e-05 CCAGTTTCGG TTTTTTTG TTCAGTTCGA chr2R:18313066-18313186 25 4.45e-05 TTATTTACTT TTTTTTTG TTGTCGTTAT chr3L:19696165-19696285 75 4.45e-05 TTTGTATTGT TTTTTTTG TTGTTGCTTG chr3L:14618963-14619083 108 4.45e-05 CACATATTTT TTTTTTTG GCTAT chrX:5915651-5915771 62 4.45e-05 GATTCTTTTT TTTTTTTG CGTTATCAGT chr3R:18445266-18445386 98 4.45e-05 attattcttt tttttttg tttttttttt chrX:11705391-11705511 111 4.45e-05 TTCGtttttg tttttttg gt chr3L:8369097-8369217 34 4.45e-05 gtgtgttttt tttttttG GTTTGCCAAA chrX:16372686-16372806 5 5.89e-05 GCGG TTTGTGTG TATGTATGTA chr3R:31777928-31778048 29 5.89e-05 GAGAGCGTAA TTTGTGTG CTTTTGGAGC chr2L:182939-183059 95 9.24e-05 TTTTTGCTTC TGTGTTTG TGCTTCTTCG chr3L:319339-319459 40 9.24e-05 CTTGTGTGCG TGTGTTTG CGAGCAATGC chr3L:2873224-2873344 92 9.24e-05 TTTTCTTTAT TTTTTGTG GCACAGGTGT chr3R:24985280-24985400 109 9.24e-05 AGCATTTGAG TGTGTTTG TATT chr3L:22389215-22389335 60 9.24e-05 TCGCTTTGGT TTTTTGTG GTTTCGTTGA chrX:11817190-11817310 35 9.24e-05 TCGCAGTTAC TTTTTGTG cagcaagaac chr2R:6501132-6501252 43 9.24e-05 GACTTTAGAT TGTGTTTG TGAGAGAGCT chr3R:14363217-14363337 62 9.24e-05 ATTCCATACC TTTTTGTG TGCGACGGCA chr3R:16316853-16316973 97 9.24e-05 ATTCTCGTTC TTTTTGTG CGGCATCTTC chr3L:21108664-21108784 93 1.12e-04 TTTTTTTCAG TGTTTTTG GGAACGTGGT chrX:11495613-11495733 80 1.12e-04 TCCCAATCGA TGTTTTTG AGTTTCGTAA chr2R:17852410-17852530 76 1.12e-04 TGAACAGTGT TGTTTTTG GCGAACAGCA chr3L:346892-347012 6 1.48e-04 ACAGA TGTGTGTG ACAACTAAAC chr2R:10736370-10736490 50 1.48e-04 TTCAGTGACA TTTGTTTT TATCTTATCG chrX:15813412-15813532 99 1.48e-04 CAGATGTGTG TGTGTGTG TTGCCTGTTT chr3R:15293118-15293238 79 1.48e-04 AATTTCAAGG TGTGTGTG ACTAAGCCGT chr2R:24630824-24630944 86 1.48e-04 TCTTTTAATG TTTGTTTT TTATTTCGCT chr2R:24237598-24237718 66 1.48e-04 TCTCGGTCTC TTTGTTTT GATCCCGATT chr3L:17012107-17012227 79 1.48e-04 AGTCGTTAAA TGTGTGTG AGTGAAAGAG chr3L:17958291-17958411 94 1.48e-04 CCGATGCTTG TGTGTGTG TGCTTTCATT chr3R:20952462-20952582 74 1.48e-04 CTGTCCGtaa tttgtttt aatttaaata chr2L:18455743-18455863 75 1.48e-04 GCAGCGCGTA TGTGTGTG CGTAACTACA chrX:15303740-15303860 31 1.48e-04 TGAATTTATT TTTGTTTT ATTCTTTTTC chrX:19495780-19495900 45 1.48e-04 GCATCCCCAA TGTGTGTG CGTGTACGTC chr2R:24046202-24046322 14 1.48e-04 GAAAATCCAA TGTGTGTG CATTTCTCTT chrX:10547693-10547813 99 1.48e-04 TGTTATGCGC TTTGTTTT CTTTGTTATT chr2R:23815978-23816098 105 1.48e-04 GCCGAATGCC TTTGTTTT GCTTGTGT chr3R:30095528-30095648 27 1.48e-04 TCGCCGACTT TTTGTTTT CATTATTTTC chr3L:18800574-18800694 60 1.96e-04 ttatttatat tttttttt atttatttct chr2R:17804363-17804483 42 1.96e-04 TGTTGCCCAG TGTTTGTG ATTACGTTTT chr3R:31682540-31682660 105 1.96e-04 TTCGAATGTC TTTTTTTT TAAGCCTG chr3L:2805198-2805318 3 1.96e-04 GT TTTTTTTT TTTATTATTT chr3L:15212928-15213048 29 1.96e-04 CTGCTCACGT TTTTTTTT CCTTTTTCCC chr3L:6249329-6249449 23 1.96e-04 AGCTCGTATG TTTTTTTT CACGATTTTC chr3R:14398757-14398877 20 1.96e-04 GTGCGGGTTT TTTTTTTT TACGAAGGTG chr3L:4353164-4353284 1 1.96e-04 . TTTTTTTT CTTTCTTTCA chrX:10113683-10113803 4 2.15e-04 CAG TTTGTGTT GGCCATTTCG chr2R:7370385-7370505 35 2.60e-04 AAGCAGCAGG TGTGTTTT TATTTTACCT chr2L:5291197-5291317 13 2.60e-04 ACCCGAAAAG TTTTTGTT GTGAAACGAA chr2R:8608077-8608197 66 2.60e-04 AGACTTTCCC TTTTTGTT TACCAGCGCC chr3L:22823404-22823524 113 2.60e-04 TTTGTGGCAA TTTTTGTT chr2R:13994279-13994399 51 2.85e-04 GTTGTACGCT TGTTTTTT CGGGTTTTTC chrX:16282145-16282265 78 3.14e-04 GGGGCTTGAT TTCGTTTG GCCCGATTTG chr2R:23746104-23746224 112 3.52e-04 GTTAATCACT TGTTTGTT T chr3L:19022115-19022235 12 3.52e-04 TTCCAGTTCT TTCTTTTG CGGCTTGTCG chr3R:9350850-9350970 95 3.52e-04 CATCAGCATA TGTTTGTT GGTTTTACTG chr2R:19462434-19462554 90 3.63e-04 TTCCACTTCA TTCGTGTG GTCACCGTCG chr3L:2833828-2833948 64 4.18e-04 CATTCCCGCC TGCTTTTG GCCCTCTTGT chr2R:21249764-21249884 5 4.18e-04 GGGA TGCTTTTG TGGACGGACT chr2L:1116962-1117082 4 4.18e-04 TGT TGCTTTTG TGCGGCCCCA chr3R:22590241-22590361 43 4.18e-04 ATTCTCCAGC TTTGGTTG TTAAATTTAT chr2L:4069232-4069352 109 4.18e-04 TCTTCTCGAC TTTGGTTG CGTA chrX:6747351-6747471 1 4.18e-04 . tgcttttg cttttgctct chr2R:14433357-14433477 96 4.98e-04 GTTTCGATTT TTCGTTTT TTACCCATTT chr2L:11155796-11155916 94 4.98e-04 TTCTTGAGTG TGCGTGTG TGAGTTGTTT chr3L:14973395-14973515 81 4.98e-04 ATTTCTGATT TTCGTTTT CAGCGCTCCT chr2R:11098386-11098506 29 4.98e-04 GCGGCTTCGA TTCGTTTT ATCAGAGCGG chrX:17109808-17109928 4 4.98e-04 CGT TTCGTTTT TTGGGCTGCA chr2L:634884-635004 29 5.46e-04 actgcatttc tgcttgtg GCTTCTCTCG chr3L:19694500-19694620 108 5.46e-04 TTGCCACAGt ttcttttt tcttt chr2R:21864266-21864386 65 6.51e-04 AAGCGCTTAT TTTTTGCG CCTCTTGCAA chr2R:17509382-17509502 23 6.51e-04 tgttgactga tgttgttg tgcgttgttg chr3L:2151754-2151874 95 7.18e-04 AGCGGTTCTC TTGTTTTG ATCTCTTGAC chr3L:11280732-11280852 108 7.65e-04 ttgcgttggt tttggttt ttggc chr3L:8825726-8825846 28 7.65e-04 GGGTTTTGGT TTTGGTTT CGGTTTCGGT chr2R:11205118-11205238 95 7.65e-04 GCTGCGCTGG TGTGGGTG TTTTTATATG chr3L:1457875-1457995 19 7.65e-04 CGGATGTTGT TGCTTTTT CTTCAAACTT chr2R:14337678-14337798 108 7.65e-04 Attttctggt tttggttt tttat chr3L:3251398-3251518 51 8.40e-04 TTGATTTTAC TTTGTTCT CGGGTTTTGC chr3L:4414598-4414718 21 8.40e-04 TACTGTAGCT TTTGTTCT TGCGCCCGCT chr2L:11023716-11023836 112 8.40e-04 ttcagtttgg tgttggtg t chrX:756891-757011 8 9.13e-04 TTCTCTA TTGTTGTG AGCTGGCTCC chr3R:12960424-12960544 111 9.56e-04 AGCAGTGGCA TTTGGGTT AT chr3R:21837500-21837620 112 1.08e-03 GTTGTTGAAC TTTTTGCT T chr2R:7727581-7727701 26 1.08e-03 GTTCCACTGC TGTGTTCT TATCTTATCG chr2R:6125448-6125568 106 1.08e-03 TTCTTTGCCG TTTTTGCT TTGTTGT chr3L:4107141-4107261 73 1.23e-03 ATTGACGCGC TGTGTGCT TCTGAGGGGC chr3R:10828817-10828937 99 1.23e-03 ATGGCAGTGC TGTGTGCT GTGGGTCTTA chr3L:5627957-5628077 66 1.29e-03 GATACAAAAA TTGTTGTT CCTTTTCCCC chr2R:13955773-13955893 63 1.29e-03 cagcggctgc tgtttgct gcgcttgctg chr3R:17061854-17061974 107 1.32e-03 CGACAGTGAC TGGTTTTT TAATGA chr3L:11320161-11320281 89 1.34e-03 TCCTGGAAGC Ttctggtg ctgcttctgt chr3L:16178600-16178720 111 1.42e-03 CCTCAGTCGG TGGTtgtt tg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTKTK MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:24105099-24105219 1.9e-05 71_[+2]_41 chr3L:16613182-16613302 1.9e-05 32_[+2]_80 chr2R:6505067-6505187 1.9e-05 9_[+2]_103 chr2R:11453005-11453125 1.9e-05 96_[+2]_16 chr3L:15625024-15625144 1.9e-05 47_[+2]_65 chrX:18974679-18974799 1.9e-05 55_[+2]_57 chr3R:23220388-23220508 4.5e-05 35_[+2]_77 chr3R:7967861-7967981 4.5e-05 98_[+2]_14 chr3L:17922861-17922981 4.5e-05 58_[+2]_54 chrX:2012346-2012466 4.5e-05 33_[+2]_79 chrX:10021979-10022099 4.5e-05 8_[+2]_104 chr2R:11206720-11206840 4.5e-05 93_[+2]_19 chrX:8230587-8230707 4.5e-05 63_[+2]_49 chrX:1578286-1578406 4.5e-05 101_[+2]_11 chr3R:31936360-31936480 4.5e-05 65_[+2]_47 chrX:11684572-11684692 4.5e-05 2_[+2]_110 chr3R:30308453-30308573 4.5e-05 65_[+2]_47 chr3R:18669281-18669401 4.5e-05 99_[+2]_13 chr2R:18313066-18313186 4.5e-05 24_[+2]_88 chr3L:19696165-19696285 4.5e-05 74_[+2]_38 chr3L:14618963-14619083 4.5e-05 107_[+2]_5 chrX:5915651-5915771 4.5e-05 61_[+2]_51 chr3R:18445266-18445386 4.5e-05 97_[+2]_15 chrX:11705391-11705511 4.5e-05 110_[+2]_2 chr3L:8369097-8369217 4.5e-05 33_[+2]_79 chrX:16372686-16372806 5.9e-05 4_[+2]_108 chr3R:31777928-31778048 5.9e-05 28_[+2]_84 chr2L:182939-183059 9.2e-05 94_[+2]_18 chr3L:319339-319459 9.2e-05 39_[+2]_73 chr3L:2873224-2873344 9.2e-05 91_[+2]_21 chr3R:24985280-24985400 9.2e-05 108_[+2]_4 chr3L:22389215-22389335 9.2e-05 59_[+2]_53 chrX:11817190-11817310 9.2e-05 34_[+2]_78 chr2R:6501132-6501252 9.2e-05 42_[+2]_70 chr3R:14363217-14363337 9.2e-05 61_[+2]_51 chr3R:16316853-16316973 9.2e-05 96_[+2]_16 chr3L:21108664-21108784 0.00011 92_[+2]_20 chrX:11495613-11495733 0.00011 79_[+2]_33 chr2R:17852410-17852530 0.00011 75_[+2]_37 chr3L:346892-347012 0.00015 5_[+2]_107 chr2R:10736370-10736490 0.00015 49_[+2]_63 chrX:15813412-15813532 0.00015 98_[+2]_14 chr3R:15293118-15293238 0.00015 78_[+2]_34 chr2R:24630824-24630944 0.00015 85_[+2]_27 chr2R:24237598-24237718 0.00015 65_[+2]_47 chr3L:17012107-17012227 0.00015 78_[+2]_34 chr3L:17958291-17958411 0.00015 93_[+2]_19 chr3R:20952462-20952582 0.00015 73_[+2]_39 chr2L:18455743-18455863 0.00015 74_[+2]_38 chrX:15303740-15303860 0.00015 30_[+2]_82 chrX:19495780-19495900 0.00015 44_[+2]_68 chr2R:24046202-24046322 0.00015 13_[+2]_99 chrX:10547693-10547813 0.00015 98_[+2]_14 chr2R:23815978-23816098 0.00015 104_[+2]_8 chr3R:30095528-30095648 0.00015 26_[+2]_86 chr3L:18800574-18800694 0.0002 59_[+2]_53 chr2R:17804363-17804483 0.0002 41_[+2]_71 chr3R:31682540-31682660 0.0002 104_[+2]_8 chr3L:2805198-2805318 0.0002 2_[+2]_110 chr3L:15212928-15213048 0.0002 28_[+2]_84 chr3L:6249329-6249449 0.0002 22_[+2]_90 chr3R:14398757-14398877 0.0002 19_[+2]_93 chr3L:4353164-4353284 0.0002 [+2]_112 chrX:10113683-10113803 0.00022 3_[+2]_109 chr2R:7370385-7370505 0.00026 34_[+2]_78 chr2L:5291197-5291317 0.00026 12_[+2]_100 chr2R:8608077-8608197 0.00026 65_[+2]_47 chr3L:22823404-22823524 0.00026 112_[+2] chr2R:13994279-13994399 0.00028 50_[+2]_62 chrX:16282145-16282265 0.00031 77_[+2]_35 chr2R:23746104-23746224 0.00035 111_[+2]_1 chr3L:19022115-19022235 0.00035 11_[+2]_101 chr3R:9350850-9350970 0.00035 94_[+2]_18 chr2R:19462434-19462554 0.00036 89_[+2]_23 chr3L:2833828-2833948 0.00042 63_[+2]_49 chr2R:21249764-21249884 0.00042 4_[+2]_108 chr2L:1116962-1117082 0.00042 3_[+2]_109 chr3R:22590241-22590361 0.00042 42_[+2]_70 chr2L:4069232-4069352 0.00042 108_[+2]_4 chrX:6747351-6747471 0.00042 [+2]_112 chr2R:14433357-14433477 0.0005 95_[+2]_17 chr2L:11155796-11155916 0.0005 93_[+2]_19 chr3L:14973395-14973515 0.0005 80_[+2]_32 chr2R:11098386-11098506 0.0005 28_[+2]_84 chrX:17109808-17109928 0.0005 3_[+2]_109 chr2L:634884-635004 0.00055 28_[+2]_84 chr3L:19694500-19694620 0.00055 107_[+2]_5 chr2R:21864266-21864386 0.00065 64_[+2]_48 chr2R:17509382-17509502 0.00065 22_[+2]_90 chr3L:2151754-2151874 0.00072 94_[+2]_18 chr3L:11280732-11280852 0.00077 107_[+2]_5 chr3L:8825726-8825846 0.00077 27_[+2]_85 chr2R:11205118-11205238 0.00077 94_[+2]_18 chr3L:1457875-1457995 0.00077 18_[+2]_94 chr2R:14337678-14337798 0.00077 107_[+2]_5 chr3L:3251398-3251518 0.00084 50_[+2]_62 chr3L:4414598-4414718 0.00084 20_[+2]_92 chr2L:11023716-11023836 0.00084 111_[+2]_1 chrX:756891-757011 0.00091 7_[+2]_105 chr3R:12960424-12960544 0.00096 110_[+2]_2 chr3R:21837500-21837620 0.0011 111_[+2]_1 chr2R:7727581-7727701 0.0011 25_[+2]_87 chr2R:6125448-6125568 0.0011 105_[+2]_7 chr3L:4107141-4107261 0.0012 72_[+2]_40 chr3R:10828817-10828937 0.0012 98_[+2]_14 chr3L:5627957-5628077 0.0013 65_[+2]_47 chr2R:13955773-13955893 0.0013 62_[+2]_50 chr3R:17061854-17061974 0.0013 106_[+2]_6 chr3L:11320161-11320281 0.0013 88_[+2]_24 chr3L:16178600-16178720 0.0014 110_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTKTK MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTKTKTK width=8 seqs=110 chr3R:24105099-24105219 ( 72) TTTGTTTG 1 chr3L:16613182-16613302 ( 33) TTTGTTTG 1 chr2R:6505067-6505187 ( 10) TTTGTTTG 1 chr2R:11453005-11453125 ( 97) TTTGTTTG 1 chr3L:15625024-15625144 ( 48) TTTGTTTG 1 chrX:18974679-18974799 ( 56) TTTGTTTG 1 chr3R:23220388-23220508 ( 36) TTTTTTTG 1 chr3R:7967861-7967981 ( 99) TTTTTTTG 1 chr3L:17922861-17922981 ( 59) TTTTTTTG 1 chrX:2012346-2012466 ( 34) TTTTTTTG 1 chrX:10021979-10022099 ( 9) TTTTTTTG 1 chr2R:11206720-11206840 ( 94) TTTTTTTG 1 chrX:8230587-8230707 ( 64) TTTTTTTG 1 chrX:1578286-1578406 ( 102) TTTTTTTG 1 chr3R:31936360-31936480 ( 66) TTTTTTTG 1 chrX:11684572-11684692 ( 3) TTTTTTTG 1 chr3R:30308453-30308573 ( 66) TTTTTTTG 1 chr3R:18669281-18669401 ( 100) TTTTTTTG 1 chr2R:18313066-18313186 ( 25) TTTTTTTG 1 chr3L:19696165-19696285 ( 75) TTTTTTTG 1 chr3L:14618963-14619083 ( 108) TTTTTTTG 1 chrX:5915651-5915771 ( 62) TTTTTTTG 1 chr3R:18445266-18445386 ( 98) TTTTTTTG 1 chrX:11705391-11705511 ( 111) TTTTTTTG 1 chr3L:8369097-8369217 ( 34) TTTTTTTG 1 chrX:16372686-16372806 ( 5) TTTGTGTG 1 chr3R:31777928-31778048 ( 29) TTTGTGTG 1 chr2L:182939-183059 ( 95) TGTGTTTG 1 chr3L:319339-319459 ( 40) TGTGTTTG 1 chr3L:2873224-2873344 ( 92) TTTTTGTG 1 chr3R:24985280-24985400 ( 109) TGTGTTTG 1 chr3L:22389215-22389335 ( 60) TTTTTGTG 1 chrX:11817190-11817310 ( 35) TTTTTGTG 1 chr2R:6501132-6501252 ( 43) TGTGTTTG 1 chr3R:14363217-14363337 ( 62) TTTTTGTG 1 chr3R:16316853-16316973 ( 97) TTTTTGTG 1 chr3L:21108664-21108784 ( 93) TGTTTTTG 1 chrX:11495613-11495733 ( 80) TGTTTTTG 1 chr2R:17852410-17852530 ( 76) TGTTTTTG 1 chr3L:346892-347012 ( 6) TGTGTGTG 1 chr2R:10736370-10736490 ( 50) TTTGTTTT 1 chrX:15813412-15813532 ( 99) TGTGTGTG 1 chr3R:15293118-15293238 ( 79) TGTGTGTG 1 chr2R:24630824-24630944 ( 86) TTTGTTTT 1 chr2R:24237598-24237718 ( 66) TTTGTTTT 1 chr3L:17012107-17012227 ( 79) TGTGTGTG 1 chr3L:17958291-17958411 ( 94) TGTGTGTG 1 chr3R:20952462-20952582 ( 74) TTTGTTTT 1 chr2L:18455743-18455863 ( 75) TGTGTGTG 1 chrX:15303740-15303860 ( 31) TTTGTTTT 1 chrX:19495780-19495900 ( 45) TGTGTGTG 1 chr2R:24046202-24046322 ( 14) TGTGTGTG 1 chrX:10547693-10547813 ( 99) TTTGTTTT 1 chr2R:23815978-23816098 ( 105) TTTGTTTT 1 chr3R:30095528-30095648 ( 27) TTTGTTTT 1 chr3L:18800574-18800694 ( 60) TTTTTTTT 1 chr2R:17804363-17804483 ( 42) TGTTTGTG 1 chr3R:31682540-31682660 ( 105) TTTTTTTT 1 chr3L:2805198-2805318 ( 3) TTTTTTTT 1 chr3L:15212928-15213048 ( 29) TTTTTTTT 1 chr3L:6249329-6249449 ( 23) TTTTTTTT 1 chr3R:14398757-14398877 ( 20) TTTTTTTT 1 chr3L:4353164-4353284 ( 1) TTTTTTTT 1 chrX:10113683-10113803 ( 4) TTTGTGTT 1 chr2R:7370385-7370505 ( 35) TGTGTTTT 1 chr2L:5291197-5291317 ( 13) TTTTTGTT 1 chr2R:8608077-8608197 ( 66) TTTTTGTT 1 chr3L:22823404-22823524 ( 113) TTTTTGTT 1 chr2R:13994279-13994399 ( 51) TGTTTTTT 1 chrX:16282145-16282265 ( 78) TTCGTTTG 1 chr2R:23746104-23746224 ( 112) TGTTTGTT 1 chr3L:19022115-19022235 ( 12) TTCTTTTG 1 chr3R:9350850-9350970 ( 95) TGTTTGTT 1 chr2R:19462434-19462554 ( 90) TTCGTGTG 1 chr3L:2833828-2833948 ( 64) TGCTTTTG 1 chr2R:21249764-21249884 ( 5) TGCTTTTG 1 chr2L:1116962-1117082 ( 4) TGCTTTTG 1 chr3R:22590241-22590361 ( 43) TTTGGTTG 1 chr2L:4069232-4069352 ( 109) TTTGGTTG 1 chrX:6747351-6747471 ( 1) TGCTTTTG 1 chr2R:14433357-14433477 ( 96) TTCGTTTT 1 chr2L:11155796-11155916 ( 94) TGCGTGTG 1 chr3L:14973395-14973515 ( 81) TTCGTTTT 1 chr2R:11098386-11098506 ( 29) TTCGTTTT 1 chrX:17109808-17109928 ( 4) TTCGTTTT 1 chr2L:634884-635004 ( 29) TGCTTGTG 1 chr3L:19694500-19694620 ( 108) TTCTTTTT 1 chr2R:21864266-21864386 ( 65) TTTTTGCG 1 chr2R:17509382-17509502 ( 23) TGTTGTTG 1 chr3L:2151754-2151874 ( 95) TTGTTTTG 1 chr3L:11280732-11280852 ( 108) TTTGGTTT 1 chr3L:8825726-8825846 ( 28) TTTGGTTT 1 chr2R:11205118-11205238 ( 95) TGTGGGTG 1 chr3L:1457875-1457995 ( 19) TGCTTTTT 1 chr2R:14337678-14337798 ( 108) TTTGGTTT 1 chr3L:3251398-3251518 ( 51) TTTGTTCT 1 chr3L:4414598-4414718 ( 21) TTTGTTCT 1 chr2L:11023716-11023836 ( 112) TGTTGGTG 1 chrX:756891-757011 ( 8) TTGTTGTG 1 chr3R:12960424-12960544 ( 111) TTTGGGTT 1 chr3R:21837500-21837620 ( 112) TTTTTGCT 1 chr2R:7727581-7727701 ( 26) TGTGTTCT 1 chr2R:6125448-6125568 ( 106) TTTTTGCT 1 chr3L:4107141-4107261 ( 73) TGTGTGCT 1 chr3R:10828817-10828937 ( 99) TGTGTGCT 1 chr3L:5627957-5628077 ( 66) TTGTTGTT 1 chr2R:13955773-13955893 ( 63) TGTTTGCT 1 chr3R:17061854-17061974 ( 107) TGGTTTTT 1 chr3L:11320161-11320281 ( 89) TTCTGGTG 1 chr3L:16178600-16178720 ( 111) TGGTTGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTKTK MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.21064 E= 2.6e-016 -1343 -1343 -1343 186 -1343 -1343 66 129 -1343 -53 -219 155 -1343 -1343 110 101 -1343 -1343 -119 172 -1343 -1343 73 125 -1343 -136 -1343 173 -1343 -1343 153 54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTKTK MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 110 E= 2.6e-016 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.327273 0.672727 0.000000 0.145455 0.045455 0.809091 0.000000 0.000000 0.445455 0.554545 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 0.345455 0.654545 0.000000 0.081818 0.000000 0.918182 0.000000 0.000000 0.600000 0.400000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTKTK MEME-2 regular expression -------------------------------------------------------------------------------- T[TG]T[TG]T[TG]T[GT] -------------------------------------------------------------------------------- Time 13.57 secs. ******************************************************************************** ******************************************************************************** MOTIF GCDGCWGC MEME-3 width = 8 sites = 44 llr = 381 E-value = 2.9e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::31:5:2 pos.-specific C :a::a::8 probability G 8:49:1a: matrix T 2:3::4:: bits 2.3 * * * 2.0 * * * 1.8 * ** * 1.6 ** ** * Relative 1.4 ** ** ** Entropy 1.1 ** ** ** (12.5 bits) 0.9 ** ** ** 0.7 ** ** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGGCAGC consensus T T A sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21837500-21837620 53 5.32e-06 caacacagca gcggcagc acgagatcaa chr2R:19462434-19462554 11 5.32e-06 ATCCACAGTG GCGGCAGC CACAATGGCA chr3L:17012107-17012227 104 5.32e-06 GAGAGGGAGA GCGGCAGC AGCGTTTAA chrX:11684572-11684692 23 5.32e-06 TCATACGGCG GCGGCAGC CATGCCGTAT chrX:1566070-1566190 87 5.32e-06 TGACAAGGCA GCGGCAGC GAAGCCTCTC chrX:13931679-13931799 43 5.32e-06 aaaaaTGTAA GCGGCAGC GTTTATCGCC chr2R:13955773-13955893 55 1.01e-05 tgctgctgca gcggctgc tgtttgctgc chr2L:18455743-18455863 28 1.72e-05 TCCTCTTCCC GCTGCAGC TGTGTGCGTG chr2R:18313066-18313186 76 2.35e-05 TTctgctgct gctgctgc ctgtgccgcC chr2L:10506231-10506351 80 2.35e-05 atTCCGTGTG GCTGCTGC CAAGCGATTT chrX:4448846-4448966 18 2.35e-05 agctgctgat gctgctgc tgctgcaaaa chr2R:21553781-21553901 3 2.35e-05 CG GCTGCTGC CCAGCGGCAA chr3L:6249329-6249449 82 2.35e-05 TACTTTTGCT GCTGCTGC TGCTAACTTT chr2L:11965708-11965828 13 2.35e-05 AACCGTTCAA GCTGCTGC ACCTTCcaca chr3L:11788914-11789034 93 2.71e-05 ACAAACAAAA GCGGCGGC ATCAATTTGC chr2R:11098386-11098506 16 2.71e-05 CAATCAGCTG GCGGCGGC TTCGATTCGT chr3L:21252672-21252792 88 3.50e-05 TTCACGGGGT GCAGCAGC GCCGAAGCCA chr2R:14027276-14027396 49 3.50e-05 aacaacagca gcagcagc aacaacaaca chr3R:19309348-19309468 6 3.50e-05 cagca gcagcagc agcctgagca chr2R:13994279-13994399 75 3.50e-05 TTTCTCCTGT GCAGCAGC GCGGCCTCAC chr2R:14220863-14220983 41 3.50e-05 agcagcagca gcagcagc GACATGCGGC chr2R:14433357-14433477 37 4.20e-05 GACAGCAACG GCAGCTGC TCCaaaaaca chr3L:2874218-2874338 83 4.20e-05 ACAAAATGTT GCAGCTGC CACAATTTGC chr3R:23220388-23220508 75 4.68e-05 CGGTAAAAAA GCTGCGGC GCAGTAAATG chrX:22487063-22487183 82 4.68e-05 CGCCCTGAAA GCTGCGGC GGATTGCCAA chr2L:3158996-3159116 1 5.46e-05 . gcggcaga ggcTCAAGTG chr3L:19022115-19022235 61 5.46e-05 AGAGGCAGTG GCGGCAGA ACAGCCCGAA chr3R:16254745-16254865 9 7.40e-05 AACGAGCT TCGGCAGC ATTACACATA chrX:1578286-1578406 40 7.40e-05 gtgtgtgtgt gCGGCTGA CTATTCAGTT chr2L:20825339-20825459 106 8.03e-05 CATTGGTTTA TCGGCTGC GATCGTG chr3R:10828817-10828937 71 9.07e-05 TAAAATTTAT GCTGCAGA ATTATCCATA chr2R:12946309-12946429 6 1.09e-04 AGACG TCTGCAGC CGACGAGTGC chr3R:20952462-20952582 105 1.09e-04 tttaatACGC GCTGCTGA CGTTGCCA chr3L:16178600-16178720 94 1.18e-04 aaccaaaaaG TCTGCTGC CTCAGTCGGT chr2L:11023716-11023836 38 1.18e-04 cccGGCATGA TCTGCTGC TTGGCATTTG chr2R:11384210-11384330 13 1.23e-04 ACCAGGTGGA GCGGCGGA TATTGCATTT chrX:11817190-11817310 76 1.39e-04 gtaagcaaca gcagcaga aaaaacaaca chr2R:14337678-14337798 40 1.39e-04 TCAGTTTTTT TCGGCGGC TACTGTGGAA chrX:8231691-8231811 64 1.60e-04 CCTACAGCAG GCAGCTGA AAAATTTTAA chr3R:25329320-25329440 110 1.60e-04 AAATATTTTG GCAGCTGA AAG chr3R:20765440-20765560 42 1.60e-04 ACGTTAGCAA TCAGCAGC aaaaagcaaa chr2R:22553991-22554111 48 1.77e-04 AAAAAAGAAC GCGACAGC GAAATGCGAA chr3R:24608423-24608543 84 1.77e-04 TGGCACATGA GCGACAGC AAAAAAAAAA chr3R:11868782-11868902 28 1.84e-04 TCAAAACGCT GCGACTGC GCTGCTTTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21837500-21837620 5.3e-06 52_[+3]_60 chr2R:19462434-19462554 5.3e-06 10_[+3]_102 chr3L:17012107-17012227 5.3e-06 103_[+3]_9 chrX:11684572-11684692 5.3e-06 22_[+3]_90 chrX:1566070-1566190 5.3e-06 86_[+3]_26 chrX:13931679-13931799 5.3e-06 42_[+3]_70 chr2R:13955773-13955893 1e-05 54_[+3]_58 chr2L:18455743-18455863 1.7e-05 27_[+3]_85 chr2R:18313066-18313186 2.4e-05 75_[+3]_37 chr2L:10506231-10506351 2.4e-05 79_[+3]_33 chrX:4448846-4448966 2.4e-05 17_[+3]_95 chr2R:21553781-21553901 2.4e-05 2_[+3]_110 chr3L:6249329-6249449 2.4e-05 81_[+3]_31 chr2L:11965708-11965828 2.4e-05 12_[+3]_100 chr3L:11788914-11789034 2.7e-05 92_[+3]_20 chr2R:11098386-11098506 2.7e-05 15_[+3]_97 chr3L:21252672-21252792 3.5e-05 87_[+3]_25 chr2R:14027276-14027396 3.5e-05 48_[+3]_64 chr3R:19309348-19309468 3.5e-05 5_[+3]_107 chr2R:13994279-13994399 3.5e-05 74_[+3]_38 chr2R:14220863-14220983 3.5e-05 40_[+3]_72 chr2R:14433357-14433477 4.2e-05 36_[+3]_76 chr3L:2874218-2874338 4.2e-05 82_[+3]_30 chr3R:23220388-23220508 4.7e-05 74_[+3]_38 chrX:22487063-22487183 4.7e-05 81_[+3]_31 chr2L:3158996-3159116 5.5e-05 [+3]_112 chr3L:19022115-19022235 5.5e-05 60_[+3]_52 chr3R:16254745-16254865 7.4e-05 8_[+3]_104 chrX:1578286-1578406 7.4e-05 39_[+3]_73 chr2L:20825339-20825459 8e-05 105_[+3]_7 chr3R:10828817-10828937 9.1e-05 70_[+3]_42 chr2R:12946309-12946429 0.00011 5_[+3]_107 chr3R:20952462-20952582 0.00011 104_[+3]_8 chr3L:16178600-16178720 0.00012 93_[+3]_19 chr2L:11023716-11023836 0.00012 37_[+3]_75 chr2R:11384210-11384330 0.00012 12_[+3]_100 chrX:11817190-11817310 0.00014 75_[+3]_37 chr2R:14337678-14337798 0.00014 39_[+3]_73 chrX:8231691-8231811 0.00016 63_[+3]_49 chr3R:25329320-25329440 0.00016 109_[+3]_3 chr3R:20765440-20765560 0.00016 41_[+3]_71 chr2R:22553991-22554111 0.00018 47_[+3]_65 chr3R:24608423-24608543 0.00018 83_[+3]_29 chr3R:11868782-11868902 0.00018 27_[+3]_85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCDGCWGC width=8 seqs=44 chr3R:21837500-21837620 ( 53) GCGGCAGC 1 chr2R:19462434-19462554 ( 11) GCGGCAGC 1 chr3L:17012107-17012227 ( 104) GCGGCAGC 1 chrX:11684572-11684692 ( 23) GCGGCAGC 1 chrX:1566070-1566190 ( 87) GCGGCAGC 1 chrX:13931679-13931799 ( 43) GCGGCAGC 1 chr2R:13955773-13955893 ( 55) GCGGCTGC 1 chr2L:18455743-18455863 ( 28) GCTGCAGC 1 chr2R:18313066-18313186 ( 76) GCTGCTGC 1 chr2L:10506231-10506351 ( 80) GCTGCTGC 1 chrX:4448846-4448966 ( 18) GCTGCTGC 1 chr2R:21553781-21553901 ( 3) GCTGCTGC 1 chr3L:6249329-6249449 ( 82) GCTGCTGC 1 chr2L:11965708-11965828 ( 13) GCTGCTGC 1 chr3L:11788914-11789034 ( 93) GCGGCGGC 1 chr2R:11098386-11098506 ( 16) GCGGCGGC 1 chr3L:21252672-21252792 ( 88) GCAGCAGC 1 chr2R:14027276-14027396 ( 49) GCAGCAGC 1 chr3R:19309348-19309468 ( 6) GCAGCAGC 1 chr2R:13994279-13994399 ( 75) GCAGCAGC 1 chr2R:14220863-14220983 ( 41) GCAGCAGC 1 chr2R:14433357-14433477 ( 37) GCAGCTGC 1 chr3L:2874218-2874338 ( 83) GCAGCTGC 1 chr3R:23220388-23220508 ( 75) GCTGCGGC 1 chrX:22487063-22487183 ( 82) GCTGCGGC 1 chr2L:3158996-3159116 ( 1) GCGGCAGA 1 chr3L:19022115-19022235 ( 61) GCGGCAGA 1 chr3R:16254745-16254865 ( 9) TCGGCAGC 1 chrX:1578286-1578406 ( 40) GCGGCTGA 1 chr2L:20825339-20825459 ( 106) TCGGCTGC 1 chr3R:10828817-10828937 ( 71) GCTGCAGA 1 chr2R:12946309-12946429 ( 6) TCTGCAGC 1 chr3R:20952462-20952582 ( 105) GCTGCTGA 1 chr3L:16178600-16178720 ( 94) TCTGCTGC 1 chr2L:11023716-11023836 ( 38) TCTGCTGC 1 chr2R:11384210-11384330 ( 13) GCGGCGGA 1 chrX:11817190-11817310 ( 76) GCAGCAGA 1 chr2R:14337678-14337798 ( 40) TCGGCGGC 1 chrX:8231691-8231811 ( 64) GCAGCTGA 1 chr3R:25329320-25329440 ( 110) GCAGCTGA 1 chr3R:20765440-20765560 ( 42) TCAGCAGC 1 chr2R:22553991-22554111 ( 48) GCGACAGC 1 chr3R:24608423-24608543 ( 84) GCGACAGC 1 chr3R:11868782-11868902 ( 28) GCGACTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2004 E= 2.9e-009 -1210 -1210 202 -79 -1210 225 -1210 -1210 -30 -1210 106 21 -217 -1210 217 -1210 -1210 225 -1210 -1210 64 -1210 -61 49 -1210 -1210 227 -1210 -58 192 -1210 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 2.9e-009 0.000000 0.000000 0.840909 0.159091 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.431818 0.318182 0.068182 0.000000 0.931818 0.000000 0.000000 1.000000 0.000000 0.000000 0.477273 0.000000 0.136364 0.386364 0.000000 0.000000 1.000000 0.000000 0.204545 0.795455 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-3 regular expression -------------------------------------------------------------------------------- GC[GTA]GC[AT]G[CA] -------------------------------------------------------------------------------- Time 19.48 secs. ******************************************************************************** ******************************************************************************** MOTIF TTYRKTTT MEME-4 width = 8 sites = 53 llr = 420 E-value = 5.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTYRKTTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::4:::: pos.-specific C ::512::: probability G :::44::: matrix T aa5:4aaa bits 2.3 2.0 1.8 ** *** 1.6 ** *** Relative 1.4 ** *** Entropy 1.1 *** *** (11.4 bits) 0.9 *** *** 0.7 *** **** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCATTTT consensus TGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYRKTTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24237598-24237718 102 1.46e-05 TTTTTGCGGG TTCGGTTT TTCCCCGATT chr3L:8825726-8825846 40 1.46e-05 TGGTTTCGGT TTCGGTTT CTTTGGGACC chr2L:634884-635004 1 1.46e-05 . ttcggttt ccgattcttc chr2R:9551753-9551873 3 1.46e-05 TT TTCGGTTT CTGTTTTGCG chr3L:19694500-19694620 65 1.46e-05 CAATGCTAAT TTCGGTTT TATGGCCAAC chr3L:1457875-1457995 51 1.46e-05 CGGTTTCAGT TTCGGTTT CGGAGGATGG chr3L:9693658-9693778 72 1.46e-05 AAAAATCATT TTCGGTTT CTTTGCATTT chr3R:30308453-30308573 3 3.39e-05 CT TTCGTTTT TGTTTTTCTT chr2R:18313066-18313186 8 3.39e-05 GCTGCCT TTCGTTTT TATTTACTTT chrX:11705391-11705511 101 3.39e-05 CGGCACCCGT TTCGtttt tgtttttttg chrX:16372686-16372806 41 7.45e-05 GCACGAAAGT TTCAGTTT CCTATCGAAA chr3L:2873224-2873344 113 7.45e-05 CAGGTGTACT TTTGGTTT chrX:1578286-1578406 51 7.45e-05 CGGCTGACTA TTCAGTTT GTGCGCTACA chr3R:31936360-31936480 28 7.45e-05 tttttcgggt ttcagttt gtgttttctt chr2R:6505067-6505187 43 7.45e-05 ttcttccctt tttggttt ttgtgtgtgt chr3R:9350850-9350970 6 7.45e-05 tctct TTTGGTTT GTGCCTCCTT chr2R:6501132-6501252 90 7.45e-05 TTTGTTATTG TTTGGTTT TTGCCATAAC chr2R:14337678-14337798 29 7.45e-05 CCTGCTCGAC TTCAGTTT TTTTCGGCGG chr2L:11023716-11023836 102 7.45e-05 gttgctttat ttcagttt ggtgttggtg chr3R:16212348-16212468 57 7.45e-05 CCATTTTATG TTCAGTTT TTTCATCCGA chr2R:11206720-11206840 67 1.28e-04 GGCAAttttt ttcatttt ttttttattt chr3L:11280732-11280852 24 1.28e-04 ttcgtttcgt ttcatttT TGGAAACAAT chrX:8230587-8230707 98 1.28e-04 ATTTTAACCG TTTGTTTT ATTCTCTTCG chr3R:27129870-27129990 41 1.28e-04 GTTCGGCAGG tttgtttt tttctgtttt chr3R:31682540-31682660 72 1.28e-04 TTTAGCGGTT TTTGTTTT GATTTCTGAT chr2R:7308952-7309072 20 1.28e-04 GAATTTCAAT TTCATTTT GCACAACAAA chr2R:23815978-23816098 11 1.28e-04 TGAGTTTGAG TTTGTTTT GGCTGCGCGA chr2R:24630824-24630944 98 1.71e-04 TGTTTTTTAT TTCGCTTT CGCTTAATCA chr2R:7370385-7370505 55 1.71e-04 TTTTACCTTT TTCGCTTT CAAACCCAAA chr3L:22389215-22389335 49 1.71e-04 ATTCGCGTGG TTCGCTTT GGTTTTTTGT chr3L:5627957-5628077 86 2.09e-04 TTTTCCCCCT TTTATTTT TTGGTAAGAA chr3R:15293118-15293238 14 2.09e-04 TTTCTGGTGT TTTATTTT TCGGTTGCCA chrX:2012346-2012466 17 2.09e-04 GGTTCTGCat tttatttt attattattt chr3L:18800574-18800694 82 2.09e-04 atttctttta tttatttt gcatttattG chrX:15303740-15303860 2 2.09e-04 C TTTATTTT GACGGAGCAC chr3L:19696165-19696285 58 2.09e-04 TATTCCCTTC TTTATTTT TTGTATTGTT chr2R:11205118-11205238 67 2.09e-04 GATTTTGTTA TTTATTTT TCATTATTTC chrX:18974679-18974799 87 2.09e-04 TTTTTCCTGC TTTATTTT TGCTCTTCGC chr2R:13994279-13994399 107 2.09e-04 AGTTTGCTGT TTTATTTT TCGTTT chr3L:8369097-8369217 5 2.09e-04 tttc tttatttt ttactttgtg chr3R:24105099-24105219 81 2.50e-04 ATTTGTTTGT TTCACTTT cgcactggca chr3R:24985280-24985400 58 2.50e-04 AGTttttgct tttgcttt tgcctttgct chrX:6747351-6747471 33 2.50e-04 ctgcttttgc tttgcttt gcttgacttt chr3R:7497515-7497635 18 2.64e-04 GGTGCGTCTT TTCCGTTT AGTGTTCTGC chr2R:18351166-18351286 9 2.64e-04 TGTTTTCA TTCCGTTT TATTTATACT chr3L:2874218-2874338 107 2.64e-04 TTGCTGCACT TTCCGTTT TATGCG chrX:8231691-8231811 112 2.93e-04 GGTGAACTGT TTTACTTT T chr3R:29282916-29283036 110 2.93e-04 AATCTTTTCC TTTACTTT TTT chr3L:6249329-6249449 70 2.93e-04 CTGTTTTCAA TTTACTTT TGCTGCTGCT chr2R:10736370-10736490 72 3.32e-04 TTATCGAGCA TTTCGTTT ATTTATACGC chr3R:18669281-18669401 18 3.57e-04 CCCGACCGGT TTTCTTTT CGGGGGAGCA chr2R:17804363-17804483 103 4.37e-04 TGTTCTCAGC ttcttttt attatgattt chrX:5915651-5915771 54 4.37e-04 CAATGCCAGA TTCTTTTT TTTTTTTGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYRKTTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24237598-24237718 1.5e-05 101_[+4]_11 chr3L:8825726-8825846 1.5e-05 39_[+4]_73 chr2L:634884-635004 1.5e-05 [+4]_112 chr2R:9551753-9551873 1.5e-05 2_[+4]_110 chr3L:19694500-19694620 1.5e-05 64_[+4]_48 chr3L:1457875-1457995 1.5e-05 50_[+4]_62 chr3L:9693658-9693778 1.5e-05 71_[+4]_41 chr3R:30308453-30308573 3.4e-05 2_[+4]_110 chr2R:18313066-18313186 3.4e-05 7_[+4]_105 chrX:11705391-11705511 3.4e-05 100_[+4]_12 chrX:16372686-16372806 7.4e-05 40_[+4]_72 chr3L:2873224-2873344 7.4e-05 112_[+4] chrX:1578286-1578406 7.4e-05 50_[+4]_62 chr3R:31936360-31936480 7.4e-05 27_[+4]_85 chr2R:6505067-6505187 7.4e-05 42_[+4]_70 chr3R:9350850-9350970 7.4e-05 5_[+4]_107 chr2R:6501132-6501252 7.4e-05 89_[+4]_23 chr2R:14337678-14337798 7.4e-05 28_[+4]_84 chr2L:11023716-11023836 7.4e-05 101_[+4]_11 chr3R:16212348-16212468 7.4e-05 56_[+4]_56 chr2R:11206720-11206840 0.00013 66_[+4]_46 chr3L:11280732-11280852 0.00013 23_[+4]_89 chrX:8230587-8230707 0.00013 97_[+4]_15 chr3R:27129870-27129990 0.00013 40_[+4]_72 chr3R:31682540-31682660 0.00013 71_[+4]_41 chr2R:7308952-7309072 0.00013 19_[+4]_93 chr2R:23815978-23816098 0.00013 10_[+4]_102 chr2R:24630824-24630944 0.00017 97_[+4]_15 chr2R:7370385-7370505 0.00017 54_[+4]_58 chr3L:22389215-22389335 0.00017 48_[+4]_64 chr3L:5627957-5628077 0.00021 85_[+4]_27 chr3R:15293118-15293238 0.00021 13_[+4]_99 chrX:2012346-2012466 0.00021 16_[+4]_96 chr3L:18800574-18800694 0.00021 81_[+4]_31 chrX:15303740-15303860 0.00021 1_[+4]_111 chr3L:19696165-19696285 0.00021 57_[+4]_55 chr2R:11205118-11205238 0.00021 66_[+4]_46 chrX:18974679-18974799 0.00021 86_[+4]_26 chr2R:13994279-13994399 0.00021 106_[+4]_6 chr3L:8369097-8369217 0.00021 4_[+4]_108 chr3R:24105099-24105219 0.00025 80_[+4]_32 chr3R:24985280-24985400 0.00025 57_[+4]_55 chrX:6747351-6747471 0.00025 32_[+4]_80 chr3R:7497515-7497635 0.00026 17_[+4]_95 chr2R:18351166-18351286 0.00026 8_[+4]_104 chr3L:2874218-2874338 0.00026 106_[+4]_6 chrX:8231691-8231811 0.00029 111_[+4]_1 chr3R:29282916-29283036 0.00029 109_[+4]_3 chr3L:6249329-6249449 0.00029 69_[+4]_43 chr2R:10736370-10736490 0.00033 71_[+4]_41 chr3R:18669281-18669401 0.00036 17_[+4]_95 chr2R:17804363-17804483 0.00044 102_[+4]_10 chrX:5915651-5915771 0.00044 53_[+4]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYRKTTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTYRKTTT width=8 seqs=53 chr2R:24237598-24237718 ( 102) TTCGGTTT 1 chr3L:8825726-8825846 ( 40) TTCGGTTT 1 chr2L:634884-635004 ( 1) TTCGGTTT 1 chr2R:9551753-9551873 ( 3) TTCGGTTT 1 chr3L:19694500-19694620 ( 65) TTCGGTTT 1 chr3L:1457875-1457995 ( 51) TTCGGTTT 1 chr3L:9693658-9693778 ( 72) TTCGGTTT 1 chr3R:30308453-30308573 ( 3) TTCGTTTT 1 chr2R:18313066-18313186 ( 8) TTCGTTTT 1 chrX:11705391-11705511 ( 101) TTCGTTTT 1 chrX:16372686-16372806 ( 41) TTCAGTTT 1 chr3L:2873224-2873344 ( 113) TTTGGTTT 1 chrX:1578286-1578406 ( 51) TTCAGTTT 1 chr3R:31936360-31936480 ( 28) TTCAGTTT 1 chr2R:6505067-6505187 ( 43) TTTGGTTT 1 chr3R:9350850-9350970 ( 6) TTTGGTTT 1 chr2R:6501132-6501252 ( 90) TTTGGTTT 1 chr2R:14337678-14337798 ( 29) TTCAGTTT 1 chr2L:11023716-11023836 ( 102) TTCAGTTT 1 chr3R:16212348-16212468 ( 57) TTCAGTTT 1 chr2R:11206720-11206840 ( 67) TTCATTTT 1 chr3L:11280732-11280852 ( 24) TTCATTTT 1 chrX:8230587-8230707 ( 98) TTTGTTTT 1 chr3R:27129870-27129990 ( 41) TTTGTTTT 1 chr3R:31682540-31682660 ( 72) TTTGTTTT 1 chr2R:7308952-7309072 ( 20) TTCATTTT 1 chr2R:23815978-23816098 ( 11) TTTGTTTT 1 chr2R:24630824-24630944 ( 98) TTCGCTTT 1 chr2R:7370385-7370505 ( 55) TTCGCTTT 1 chr3L:22389215-22389335 ( 49) TTCGCTTT 1 chr3L:5627957-5628077 ( 86) TTTATTTT 1 chr3R:15293118-15293238 ( 14) TTTATTTT 1 chrX:2012346-2012466 ( 17) TTTATTTT 1 chr3L:18800574-18800694 ( 82) TTTATTTT 1 chrX:15303740-15303860 ( 2) TTTATTTT 1 chr3L:19696165-19696285 ( 58) TTTATTTT 1 chr2R:11205118-11205238 ( 67) TTTATTTT 1 chrX:18974679-18974799 ( 87) TTTATTTT 1 chr2R:13994279-13994399 ( 107) TTTATTTT 1 chr3L:8369097-8369217 ( 5) TTTATTTT 1 chr3R:24105099-24105219 ( 81) TTCACTTT 1 chr3R:24985280-24985400 ( 58) TTTGCTTT 1 chrX:6747351-6747471 ( 33) TTTGCTTT 1 chr3R:7497515-7497635 ( 18) TTCCGTTT 1 chr2R:18351166-18351286 ( 9) TTCCGTTT 1 chr3L:2874218-2874338 ( 107) TTCCGTTT 1 chrX:8231691-8231811 ( 112) TTTACTTT 1 chr3R:29282916-29283036 ( 110) TTTACTTT 1 chr3L:6249329-6249449 ( 70) TTTACTTT 1 chr2R:10736370-10736490 ( 72) TTTCGTTT 1 chr3R:18669281-18669401 ( 18) TTTCTTTT 1 chr2R:17804363-17804483 ( 103) TTCTTTTT 1 chrX:5915651-5915771 ( 54) TTCTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYRKTTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6976 E= 5.2e-001 -1237 -1237 -1237 186 -1237 -1237 -1237 186 -1237 133 -1237 77 50 -115 106 -287 -1237 -30 93 65 -1237 -1237 -1237 186 -1237 -1237 -1237 186 -1237 -1237 -1237 186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYRKTTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 5.2e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.528302 0.000000 0.471698 0.433962 0.094340 0.433962 0.037736 0.000000 0.169811 0.396226 0.433962 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYRKTTT MEME-4 regular expression -------------------------------------------------------------------------------- TT[CT][AG][TG]TTT -------------------------------------------------------------------------------- Time 25.30 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCNTCGC MEME-5 width = 8 sites = 13 llr = 133 E-value = 9.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCNTCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::2:::: pos.-specific C a:a2:a:a probability G :a:22:a: matrix T :::38::: bits 2.3 *** *** 2.0 *** *** 1.8 *** *** 1.6 *** *** Relative 1.4 *** *** Entropy 1.1 *** **** (14.7 bits) 0.9 *** **** 0.7 *** **** 0.5 *** **** 0.2 *** **** 0.0 -------- Multilevel CGCTTCGC consensus AG sequence C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCNTCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6562882-6563002 96 1.61e-05 ATTAGCTCCT CGCCTCGC CAGCGTCTCT chr3L:2818089-2818209 13 1.61e-05 TAATTGTCTG CGCTTCGC TCTCACACAC chr3L:2833828-2833948 93 1.61e-05 TTCGCATTGG CGCGTCGC TAAAATGTTT chr3R:16254745-16254865 67 1.61e-05 GAGTGAACGC CGCCTCGC CTTTAAAACG chr3R:30526995-30527115 66 1.61e-05 TCACGAAACT CGCTTCGC TCGTTTTCCA chr3L:17012107-17012227 61 1.61e-05 TTGCAAGAGA CGCGTCGC AGTCGTTAAA chr2L:438958-439078 69 1.61e-05 AGGCAGGGAA CGCGTCGC CTTCATGGCG chr3L:8652745-8652865 35 1.61e-05 ACACTCCACG CGCCTCGC TTTGCAGTTC chr2R:6631493-6631613 103 2.32e-05 CGAGAGAGTG CGCATCGC TCATAAGAGC chr3L:10533601-10533721 14 2.32e-05 TTATGCTTGC CGCATCGC TAATTCGAAA chr2R:11205118-11205238 84 3.54e-05 TTCATTATTT CGCTGCGC TGGTGTGGGT chr3R:18445266-18445386 51 3.54e-05 GCGAAGCTGT CGCTGCGC GTTTGACGTC chr3R:16212348-16212468 30 4.08e-05 AAGCAAACAA CGCAGCGC GAAAAAATTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCNTCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6562882-6563002 1.6e-05 95_[+5]_17 chr3L:2818089-2818209 1.6e-05 12_[+5]_100 chr3L:2833828-2833948 1.6e-05 92_[+5]_20 chr3R:16254745-16254865 1.6e-05 66_[+5]_46 chr3R:30526995-30527115 1.6e-05 65_[+5]_47 chr3L:17012107-17012227 1.6e-05 60_[+5]_52 chr2L:438958-439078 1.6e-05 68_[+5]_44 chr3L:8652745-8652865 1.6e-05 34_[+5]_78 chr2R:6631493-6631613 2.3e-05 102_[+5]_10 chr3L:10533601-10533721 2.3e-05 13_[+5]_99 chr2R:11205118-11205238 3.5e-05 83_[+5]_29 chr3R:18445266-18445386 3.5e-05 50_[+5]_62 chr3R:16212348-16212468 4.1e-05 29_[+5]_83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCNTCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCNTCGC width=8 seqs=13 chr2R:6562882-6563002 ( 96) CGCCTCGC 1 chr3L:2818089-2818209 ( 13) CGCTTCGC 1 chr3L:2833828-2833948 ( 93) CGCGTCGC 1 chr3R:16254745-16254865 ( 67) CGCCTCGC 1 chr3R:30526995-30527115 ( 66) CGCTTCGC 1 chr3L:17012107-17012227 ( 61) CGCGTCGC 1 chr2L:438958-439078 ( 69) CGCGTCGC 1 chr3L:8652745-8652865 ( 35) CGCCTCGC 1 chr2R:6631493-6631613 ( 103) CGCATCGC 1 chr3L:10533601-10533721 ( 14) CGCATCGC 1 chr2R:11205118-11205238 ( 84) CGCTGCGC 1 chr3R:18445266-18445386 ( 51) CGCTGCGC 1 chr3R:16212348-16212468 ( 30) CGCAGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCNTCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6156 E= 9.9e+002 -1035 225 -1035 -1035 -1035 -1035 227 -1035 -1035 225 -1035 -1035 -41 14 15 16 -1035 -1035 15 148 -1035 225 -1035 -1035 -1035 -1035 227 -1035 -1035 225 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCNTCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 9.9e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.230769 0.230769 0.230769 0.307692 0.000000 0.000000 0.230769 0.769231 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCNTCGC MEME-5 regular expression -------------------------------------------------------------------------------- CGC[TACG][TG]CGC -------------------------------------------------------------------------------- Time 31.01 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8142874-8142994 2.00e-01 41_[+1(7.89e-05)]_71 chr3L:15761725-15761845 2.14e-02 33_[+1(7.89e-05)]_79 chr2R:10580917-10581037 4.11e-01 120 chr3R:21658400-21658520 2.79e-01 120 chr3L:8369097-8369217 1.20e-02 16_[+2(5.89e-05)]_9_[+2(4.45e-05)]_\ 79 chr2R:14220863-14220983 5.96e-03 12_[+5(8.43e-05)]_8_[+3(3.50e-05)]_\ 1_[+3(3.50e-05)]_75 chr2L:73987-74107 3.16e-01 120 chr2R:13476289-13476409 5.00e-01 120 chr2R:23983065-23983185 8.28e-01 120 chr3R:20765440-20765560 4.43e-02 56_[+1(7.89e-05)]_16_[+1(7.89e-05)]_\ 32 chr3R:27199001-27199121 6.23e-02 53_[+1(7.89e-05)]_59 chrX:12891907-12892027 9.56e-01 120 chr2L:11965708-11965828 1.42e-02 12_[+3(2.35e-05)]_55_[+1(7.89e-05)]_\ 37 chrX:6747351-6747471 1.59e-02 120 chr3R:16212348-16212468 2.35e-03 29_[+5(4.08e-05)]_19_[+4(7.45e-05)]_\ 56 chr2R:13994279-13994399 8.55e-04 74_[+3(3.50e-05)]_38 chr3R:15553604-15553724 7.76e-01 120 chr3L:3073257-3073377 5.11e-01 120 chr2L:11023716-11023836 4.92e-03 101_[+4(7.45e-05)]_11 chr3R:20265963-20266083 7.87e-02 25_[+1(7.89e-05)]_87 chr3L:13255342-13255462 4.26e-01 120 chr3L:12409541-12409661 1.70e-01 120 chr3L:10533601-10533721 5.23e-03 13_[+5(2.32e-05)]_99 chr3R:16316853-16316973 4.00e-03 96_[+2(9.24e-05)]_16 chr3R:7322715-7322835 1.46e-01 120 chr3R:30095528-30095648 3.35e-02 120 chrX:18974679-18974799 1.08e-03 55_[+2(1.91e-05)]_[+2(9.24e-05)]_49 chr2R:23815978-23816098 1.79e-04 120 chr3R:21024262-21024382 4.36e-02 71_[+1(7.89e-05)]_41 chr2R:14315695-14315815 2.26e-01 120 chr3L:17002389-17002509 9.84e-01 120 chr3L:4353164-4353284 2.65e-03 49_[+1(7.89e-05)]_63 chr2R:17509382-17509502 5.45e-01 120 chr3R:14398757-14398877 3.90e-02 120 chr2R:10874265-10874385 1.25e-01 120 chr3L:9477266-9477386 5.09e-02 120 chrX:13931679-13931799 1.00e-03 14_[+1(7.89e-05)]_7_[+1(7.89e-05)]_\ 5_[+3(5.32e-06)]_70 chr2R:7308952-7309072 7.08e-03 120 chr3L:6249329-6249449 1.35e-04 78_[+3(2.35e-05)]_34 chr2R:19902530-19902650 1.96e-01 120 chrX:3151245-3151365 2.48e-01 120 chr2R:22261184-22261304 3.14e-01 120 chr3R:24137685-24137805 3.71e-01 120 chr3L:15212928-15213048 6.37e-02 120 chr2R:21553781-21553901 9.74e-03 2_[+3(2.35e-05)]_20_[+1(7.89e-05)]_\ 24_[+1(7.89e-05)]_50 chr3L:8652745-8652865 7.33e-02 34_[+5(1.61e-05)]_78 chr3L:12387400-12387520 8.46e-01 120 chrX:4448846-4448966 1.56e-03 17_[+3(2.35e-05)]_6_[+1(7.89e-05)]_\ [+1(7.89e-05)]_73 chr3L:21384645-21384765 9.54e-02 8_[+1(7.89e-05)]_104 chr2R:21864266-21864386 2.88e-02 47_[+1(7.89e-05)]_65 chrX:1613513-1613633 1.77e-01 120 chr2R:8737932-8738052 4.31e-01 120 chr3L:16216092-16216212 1.33e-01 120 chrX:11705391-11705511 2.46e-03 40_[+2(4.45e-05)]_52_[+4(3.39e-05)]_\ 2_[+2(4.45e-05)]_2 chr3L:8151910-8152030 3.81e-01 120 chr2R:14337678-14337798 8.33e-03 28_[+4(7.45e-05)]_71_[+4(7.45e-05)]_\ 5 chr2L:438958-439078 1.07e-02 68_[+5(1.61e-05)]_44 chr3L:9693658-9693778 6.55e-03 71_[+4(1.46e-05)]_41 chr2L:7334336-7334456 7.51e-02 64_[+1(7.89e-05)]_8_[+1(7.89e-05)]_\ 32 chrX:1271202-1271322 8.03e-02 120 chr2R:17852410-17852530 1.21e-01 120 chr2R:17099203-17099323 7.71e-01 120 chr3L:11320161-11320281 3.15e-01 120 chrX:10113683-10113803 9.73e-02 120 chr3R:7523834-7523954 2.40e-01 17_[+1(7.89e-05)]_95 chr2L:4069232-4069352 5.87e-03 25_[+1(7.89e-05)]_87 chr3L:15625024-15625144 3.61e-03 47_[+2(1.91e-05)]_19_[+1(7.89e-05)]_\ 38 chr2L:20825339-20825459 1.60e-01 105_[+3(8.03e-05)]_7 chrX:10547693-10547813 1.10e-02 120 chr2L:93023-93143 9.95e-01 120 chr2L:10506231-10506351 2.35e-02 79_[+3(2.35e-05)]_33 chr2R:13955773-13955893 2.25e-03 54_[+3(1.01e-05)]_58 chr3L:11369991-11370111 8.13e-01 120 chr3R:18445266-18445386 1.35e-04 50_[+5(3.54e-05)]_39_[+2(4.45e-05)]_\ 15 chr3L:1457875-1457995 1.94e-03 38_[+4(1.46e-05)]_4_[+4(1.46e-05)]_\ 62 chr3R:22590241-22590361 4.90e-02 120 chr3L:19900527-19900647 1.95e-01 120 chr2R:11453005-11453125 2.58e-03 96_[+2(1.91e-05)]_5_[+2(9.24e-05)]_\ 3 chrX:2070363-2070483 8.87e-01 120 chr3R:10828817-10828937 1.33e-01 70_[+3(9.07e-05)]_42 chrX:3772882-3773002 4.21e-02 120 chr3L:15547474-15547594 1.19e-01 120 chr2L:12620752-12620872 6.36e-01 120 chr2R:10537914-10538034 5.90e-01 120 chr2R:21707127-21707247 6.99e-01 120 chr3R:29282916-29283036 6.14e-02 120 chr2L:10500393-10500513 1.12e-01 120 chr3L:19694500-19694620 3.41e-03 45_[+4(3.39e-05)]_11_[+4(1.46e-05)]_\ 48 chr2R:9551753-9551873 2.57e-04 2_[+4(1.46e-05)]_110 chr3R:14363217-14363337 2.62e-02 34_[+2(5.89e-05)]_21_[+2(5.89e-05)]_\ 49 chr3R:19064205-19064325 2.89e-02 73_[+1(7.89e-05)]_39 chr2R:11098181-11098301 2.23e-01 120 chr2R:6501132-6501252 1.13e-02 42_[+2(9.24e-05)]_39_[+4(7.45e-05)]_\ 23 chrX:17109808-17109928 6.06e-04 3_[+4(3.39e-05)]_44_[+1(7.89e-05)]_\ 57 chrX:1566070-1566190 2.05e-03 53_[+1(7.89e-05)]_25_[+3(5.32e-06)]_\ 26 chr2R:12917516-12917636 1.56e-01 120 chr3L:22191321-22191441 8.64e-01 120 chr3R:14677864-14677984 7.39e-02 120 chr2R:11205118-11205238 7.12e-03 83_[+5(3.54e-05)]_29 chr3L:4414598-4414718 1.94e-01 120 chr3L:2805198-2805318 1.17e-02 120 chrX:22487063-22487183 5.02e-02 81_[+3(4.68e-05)]_31 chrX:5915651-5915771 7.18e-03 61_[+2(4.45e-05)]_51 chrX:12732533-12732653 9.96e-02 67_[+1(7.89e-05)]_14_[+1(7.89e-05)]_\ 4_[+1(7.89e-05)]_11 chr2R:18312360-18312480 1.65e-01 60_[+1(7.89e-05)]_52 chr3L:6066049-6066169 2.47e-01 120 chr3L:2874218-2874338 1.20e-03 62_[+1(7.89e-05)]_12_[+3(4.20e-05)]_\ 30 chr3R:9350850-9350970 2.75e-02 5_[+4(7.45e-05)]_107 chr3L:22823404-22823524 3.98e-02 120 chr3L:19022115-19022235 7.95e-04 60_[+3(5.46e-05)]_52 chrX:11817190-11817310 1.44e-03 34_[+2(9.24e-05)]_78 chr3L:8825137-8825257 6.79e-01 120 chr3L:20688533-20688653 2.63e-01 120 chr3L:4107141-4107261 6.09e-01 120 chr2R:16154082-16154202 3.21e-01 23_[+1(7.89e-05)]_24_[+1(7.89e-05)]_\ 57 chr3R:24608423-24608543 5.24e-02 51_[+1(7.89e-05)]_32_[+1(7.89e-05)]_\ 21 chr3L:18007629-18007749 4.02e-02 120 chr2L:19322019-19322139 1.35e-01 48_[+1(7.89e-05)]_64 chr3L:1828140-1828260 5.31e-01 120 chr3L:2766131-2766251 2.61e-01 120 chr2R:24046202-24046322 2.70e-02 120 chrX:19495780-19495900 1.05e-01 120 chr2L:14226489-14226609 5.28e-01 120 chrX:1622030-1622150 7.53e-01 120 chr2L:634884-635004 4.55e-03 [+4(1.46e-05)]_112 chr3L:8825726-8825846 1.86e-02 21_[+4(7.45e-05)]_4_[+4(1.46e-05)]_\ 79 chr2R:18291324-18291444 4.62e-01 43_[+1(7.89e-05)]_69 chr2R:6505067-6505187 7.68e-03 9_[+2(1.91e-05)]_32_[+2(5.89e-05)]_\ 49_[+2(9.24e-05)]_6 chr3R:31682540-31682660 5.59e-02 8_[+2(9.24e-05)]_33_[+2(9.24e-05)]_\ 63 chr3L:22389215-22389335 6.75e-03 53_[+4(7.45e-05)]_59 chrX:12675303-12675423 1.58e-01 89_[+1(7.89e-05)]_23 chr3R:12960424-12960544 2.00e-01 120 chr3R:17061854-17061974 2.59e-01 120 chr2R:8608077-8608197 4.02e-02 120 chrX:11495613-11495733 2.45e-02 120 chr3R:11868782-11868902 5.14e-02 120 chr2L:10226432-10226552 5.06e-01 120 chr3L:14618963-14619083 1.99e-02 107_[+2(4.45e-05)]_5 chr3L:19696165-19696285 2.89e-02 74_[+2(4.45e-05)]_38 chr3R:25472384-25472504 5.67e-01 120 chrX:15303740-15303860 7.55e-05 56_[+5(7.10e-05)]_56 chr2R:8724728-8724848 1.08e-01 120 chr3L:8057990-8058110 6.17e-01 120 chr3L:3082008-3082128 2.11e-01 120 chr3R:19309348-19309468 2.74e-02 2_[+3(3.50e-05)]_110 chr2R:6125448-6125568 6.96e-03 120 chr3R:24985280-24985400 5.32e-03 108_[+2(9.24e-05)]_4 chr3L:10321992-10322112 1.59e-01 120 chr2L:18455743-18455863 1.53e-03 27_[+3(1.72e-05)]_85 chr3R:29829509-29829629 9.19e-01 120 chr2R:6125242-6125362 8.44e-01 120 chr2R:14027276-14027396 7.46e-03 45_[+3(3.50e-05)]_67 chr3R:31937492-31937612 2.17e-01 120 chr2R:18313066-18313186 1.18e-04 7_[+4(3.39e-05)]_9_[+2(4.45e-05)]_\ 37_[+3(2.35e-05)]_43 chr3R:20952462-20952582 1.69e-04 120 chr2R:11098386-11098506 5.87e-05 15_[+3(2.71e-05)]_5_[+4(3.39e-05)]_\ 84 chr3L:3251398-3251518 1.85e-01 120 chr3R:18669281-18669401 1.54e-03 94_[+4(1.46e-05)]_18 chr3R:28536840-28536960 2.78e-01 120 chr3R:27129870-27129990 8.81e-03 120 chr3R:5332140-5332260 3.91e-01 120 chr3R:30308453-30308573 1.01e-02 2_[+4(3.39e-05)]_55_[+2(4.45e-05)]_\ 47 chrX:369867-369987 4.73e-01 120 chrX:11684572-11684692 1.31e-04 2_[+2(4.45e-05)]_12_[+3(5.32e-06)]_\ 90 chr2R:23746104-23746224 1.59e-01 120 chr2R:7132508-7132628 7.04e-01 120 chrX:756891-757011 4.11e-01 120 chr3R:25329320-25329440 7.14e-02 120 chr3L:21644672-21644792 2.40e-01 120 chr2R:17804363-17804483 7.45e-02 120 chr3L:17958291-17958411 1.31e-01 120 chrX:15568559-15568679 1.56e-01 120 chr3L:14973395-14973515 2.61e-02 80_[+4(3.39e-05)]_32 chr3L:1325508-1325628 7.70e-01 120 chr2L:14531463-14531583 1.36e-01 120 chr3L:17012107-17012227 2.97e-05 60_[+5(1.61e-05)]_35_[+3(5.32e-06)]_\ 9 chrX:8231691-8231811 4.08e-02 120 chrX:1577259-1577379 5.34e-01 120 chr3R:31936360-31936480 9.07e-03 27_[+4(7.45e-05)]_30_[+2(4.45e-05)]_\ 47 chrX:1578286-1578406 4.16e-05 39_[+3(7.40e-05)]_3_[+4(7.45e-05)]_\ 43_[+2(4.45e-05)]_11 chrX:16282145-16282265 5.45e-03 37_[+1(7.89e-05)]_75 chr3L:16613182-16613302 2.28e-02 32_[+2(1.91e-05)]_80 chr2R:18351166-18351286 2.52e-01 120 chr3L:2873224-2873344 3.27e-02 91_[+2(9.24e-05)]_13_[+4(7.45e-05)] chr3L:8518811-8518931 1.60e-01 120 chrX:8230587-8230707 1.20e-03 63_[+2(4.45e-05)]_49 chr2L:1116962-1117082 3.07e-01 120 chr3R:30526995-30527115 2.89e-02 65_[+5(1.61e-05)]_47 chr3L:11280732-11280852 4.75e-02 107_[+4(7.45e-05)]_5 chr2R:11206720-11206840 1.75e-02 93_[+2(4.45e-05)]_19 chrX:16425170-16425290 2.40e-01 120 chr3L:16178600-16178720 2.72e-02 120 chr3L:18800574-18800694 2.83e-03 24_[+5(7.10e-05)]_88 chr2R:21604094-21604214 1.22e-01 15_[+1(7.89e-05)]_5_[+1(7.89e-05)]_\ 84 chr2R:24237598-24237718 7.84e-03 101_[+4(1.46e-05)]_11 chr2R:19462434-19462554 1.10e-03 10_[+3(5.32e-06)]_102 chr2L:5291197-5291317 3.62e-02 120 chr2R:21249764-21249884 6.41e-02 52_[+1(7.89e-05)]_60 chr2L:19548266-19548386 1.63e-01 120 chr3R:31777928-31778048 2.42e-02 28_[+2(5.89e-05)]_84 chr2R:7370385-7370505 1.65e-03 120 chr2R:24630824-24630944 4.58e-02 120 chr2L:3158996-3159116 2.27e-02 [+3(5.46e-05)]_112 chrX:10021979-10022099 3.72e-02 8_[+2(4.45e-05)]_104 chrX:2012346-2012466 7.28e-04 37_[+2(1.91e-05)]_75 chrX:22855285-22855405 2.39e-01 120 chr3L:17922861-17922981 3.37e-02 58_[+2(4.45e-05)]_54 chr3L:21108664-21108784 2.15e-01 120 chr2R:7727581-7727701 2.09e-01 120 chr2R:6631493-6631613 5.37e-02 102_[+5(2.32e-05)]_10 chr3R:15293118-15293238 2.32e-03 120 chr2L:11155796-11155916 1.70e-01 120 chrX:15813412-15813532 2.57e-01 120 chr2R:12946309-12946429 7.91e-02 120 chr3R:16254745-16254865 9.02e-03 8_[+3(7.40e-05)]_50_[+5(1.61e-05)]_\ 46 chrX:13747467-13747587 1.19e-01 120 chr2R:14433357-14433477 1.50e-05 36_[+3(4.20e-05)]_9_[+1(7.89e-05)]_\ 34_[+4(3.39e-05)]_17 chr2R:14967547-14967667 1.71e-01 120 chr3L:2833828-2833948 1.47e-02 92_[+5(1.61e-05)]_20 chr3R:21837500-21837620 2.94e-03 23_[+3(3.50e-05)]_21_[+3(5.32e-06)]_\ 18_[+3(3.50e-05)]_34 chr2L:10794157-10794277 1.32e-01 48_[+1(7.89e-05)]_64 chr3L:319339-319459 3.75e-02 39_[+2(9.24e-05)]_73 chr3R:7497515-7497635 7.40e-02 120 chr3L:17965280-17965400 1.18e-01 120 chr3L:2818089-2818209 1.13e-02 12_[+5(1.61e-05)]_100 chr2R:10736370-10736490 3.37e-03 120 chr3L:11788914-11789034 1.05e-02 92_[+3(2.71e-05)]_20 chr3L:2151754-2151874 7.19e-02 120 chr2L:5209482-5209602 7.90e-01 120 chrX:16372686-16372806 5.79e-03 4_[+2(5.89e-05)]_28_[+4(7.45e-05)]_\ 72 chr2L:182939-183059 2.88e-02 94_[+2(9.24e-05)]_18 chr3R:10133757-10133877 2.17e-01 2_[+1(7.89e-05)]_110 chr2R:22179450-22179570 9.07e-01 120 chr3R:24564923-24565043 9.89e-01 120 chr2R:6562882-6563002 4.77e-02 95_[+5(1.61e-05)]_17 chr3R:24105099-24105219 1.37e-02 71_[+2(1.91e-05)]_41 chr2R:22553991-22554111 6.22e-02 32_[+1(7.89e-05)]_80 chr3R:16232620-16232740 2.02e-01 120 chr3R:7967861-7967981 1.93e-01 98_[+2(4.45e-05)]_14 chr3L:7951937-7952057 8.12e-01 120 chr2R:11384210-11384330 2.67e-01 120 chr3L:18013358-18013478 2.11e-01 120 chr3R:24603786-24603906 8.38e-01 120 chr3L:21252672-21252792 9.96e-02 87_[+3(3.50e-05)]_25 chr3R:23220388-23220508 3.53e-04 35_[+2(4.45e-05)]_31_[+3(4.68e-05)]_\ 38 chr3L:5627957-5628077 6.74e-03 120 chr2L:170452-170572 6.89e-01 120 chr2L:11738766-11738886 6.26e-01 120 chr3L:9468049-9468169 1.39e-01 29_[+1(7.89e-05)]_83 chr3L:346892-347012 1.29e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************