******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Pif1A.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:14572164-14572284 1.0000 120 chr3L:21364177-21364297 1.0000 120 chr2L:5398503-5398623 1.0000 120 chr2R:13023087-13023207 1.0000 120 chr3R:13524774-13524894 1.0000 120 chr2L:7971523-7971643 1.0000 120 chrX:13936362-13936482 1.0000 120 chr2L:11051790-11051910 1.0000 120 chrX:6632059-6632179 1.0000 120 chr4:829995-830115 1.0000 120 chr3R:19074378-19074498 1.0000 120 chr2R:15906092-15906212 1.0000 120 chrX:4965823-4965943 1.0000 120 chr3R:18624665-18624785 1.0000 120 chr3L:8813583-8813703 1.0000 120 chr2L:4359276-4359396 1.0000 120 chr2R:11315570-11315690 1.0000 120 chr2R:22119799-22119919 1.0000 120 chr3R:14684095-14684215 1.0000 120 chr3R:6214382-6214502 1.0000 120 chr2R:20209361-20209481 1.0000 120 chrX:12734508-12734628 1.0000 120 chr2R:18300955-18301075 1.0000 120 chr2L:4797692-4797812 1.0000 120 chr3R:14557547-14557667 1.0000 120 chr3L:6155258-6155378 1.0000 120 chr3L:21080595-21080715 1.0000 120 chr2L:11052558-11052678 1.0000 120 chr3R:15112378-15112498 1.0000 120 chr2L:19936262-19936382 1.0000 120 chr3R:5839101-5839221 1.0000 120 chr3L:5943653-5943773 1.0000 120 chr3L:10315001-10315121 1.0000 120 chr2L:20340728-20340848 1.0000 120 chr3R:16368449-16368569 1.0000 120 chr3R:19075229-19075349 1.0000 120 chr3R:31314617-31314737 1.0000 120 chr3R:30014048-30014168 1.0000 120 chrX:3189905-3190025 1.0000 120 chr3L:13878029-13878149 1.0000 120 chr3L:10648527-10648647 1.0000 120 chr2R:12767404-12767524 1.0000 120 chrX:10581600-10581720 1.0000 120 chr3L:11442520-11442640 1.0000 120 chr3L:9551256-9551376 1.0000 120 chr3R:19104274-19104394 1.0000 120 chr3R:14775556-14775676 1.0000 120 chr3R:14765473-14765593 1.0000 120 chr2R:11262614-11262734 1.0000 120 chr3R:21704601-21704721 1.0000 120 chr3L:8013980-8014100 1.0000 120 chr2R:13473876-13473996 1.0000 120 chr3R:30326776-30326896 1.0000 120 chr2L:3557647-3557767 1.0000 120 chr3L:20635712-20635832 1.0000 120 chr3R:23319082-23319202 1.0000 120 chr2L:13482388-13482508 1.0000 120 chr3R:28025408-28025528 1.0000 120 chr3R:10588823-10588943 1.0000 120 chr3L:16153270-16153390 1.0000 120 chr3R:20773318-20773438 1.0000 120 chrX:21044568-21044688 1.0000 120 chr3R:31482245-31482365 1.0000 120 chr2L:14624024-14624144 1.0000 120 chr2R:21061424-21061544 1.0000 120 chr2L:9231849-9231969 1.0000 120 chr2R:10656104-10656224 1.0000 120 chr3R:24024337-24024457 1.0000 120 chr3L:10913345-10913465 1.0000 120 chrX:11545184-11545304 1.0000 120 chr3L:14456083-14456203 1.0000 120 chr2L:1387921-1388041 1.0000 120 chr2L:19193812-19193932 1.0000 120 chrX:8255086-8255206 1.0000 120 chr3L:10352268-10352388 1.0000 120 chr2R:21470503-21470623 1.0000 120 chrX:10933919-10934039 1.0000 120 chr3R:27084777-27084897 1.0000 120 chr2L:13665443-13665563 1.0000 120 chr3L:19349868-19349988 1.0000 120 chr3L:3555240-3555360 1.0000 120 chr3L:12058565-12058685 1.0000 120 chr2R:15740757-15740877 1.0000 120 chr2L:7334379-7334499 1.0000 120 chr3R:5694600-5694720 1.0000 120 chr3R:21089578-21089698 1.0000 120 chr3L:4731874-4731994 1.0000 120 chr2R:19964377-19964497 1.0000 120 chr3L:19190895-19191015 1.0000 120 chr3R:31768337-31768457 1.0000 120 chrX:2358305-2358425 1.0000 120 chrX:15618068-15618188 1.0000 120 chr3R:14717367-14717487 1.0000 120 chr2R:10474732-10474852 1.0000 120 chr3L:5637630-5637750 1.0000 120 chr3R:22400409-22400529 1.0000 120 chr3R:11806865-11806985 1.0000 120 chr2L:3012912-3013032 1.0000 120 chr2R:7848677-7848797 1.0000 120 chr2R:6521241-6521361 1.0000 120 chr2L:7071899-7072019 1.0000 120 chrX:17542897-17543017 1.0000 120 chr3L:3444395-3444515 1.0000 120 chr2R:20580858-20580978 1.0000 120 chrX:12744224-12744344 1.0000 120 chr2R:18901737-18901857 1.0000 120 chr2R:14345454-14345574 1.0000 120 chr3R:29280728-29280848 1.0000 120 chr3L:12030612-12030732 1.0000 120 chr3R:16119610-16119730 1.0000 120 chr3R:27167517-27167637 1.0000 120 chr2R:10558239-10558359 1.0000 120 chr2L:20821588-20821708 1.0000 120 chr2R:19157699-19157819 1.0000 120 chr3R:24614262-24614382 1.0000 120 chr3R:26500547-26500667 1.0000 120 chr3L:166607-166727 1.0000 120 chr3L:9848868-9848988 1.0000 120 chr3L:7632943-7633063 1.0000 120 chrX:11601010-11601130 1.0000 120 chr2R:16212920-16213040 1.0000 120 chr2L:20721584-20721704 1.0000 120 chr3R:30567351-30567471 1.0000 120 chr3L:539903-540023 1.0000 120 chr2L:5225750-5225870 1.0000 120 chr2R:21543370-21543490 1.0000 120 chrX:9468447-9468567 1.0000 120 chrX:13406424-13406544 1.0000 120 chr3L:787737-787857 1.0000 120 chr3L:623680-623800 1.0000 120 chr2L:10231327-10231447 1.0000 120 chr3R:22140207-22140327 1.0000 120 chr3R:18469615-18469735 1.0000 120 chr3R:15631053-15631173 1.0000 120 chr3L:2575335-2575455 1.0000 120 chrX:18544912-18545032 1.0000 120 chrX:13747829-13747949 1.0000 120 chr3L:19315019-19315139 1.0000 120 chr3L:20612965-20613085 1.0000 120 chr3R:24549884-24550004 1.0000 120 chr3R:24261768-24261888 1.0000 120 chr2L:7949919-7950039 1.0000 120 chr2R:8358040-8358160 1.0000 120 chr2R:21389318-21389438 1.0000 120 chr3R:21823159-21823279 1.0000 120 chr3R:8847429-8847549 1.0000 120 chr2R:18356019-18356139 1.0000 120 chr2R:18314490-18314610 1.0000 120 chr3L:8881978-8882098 1.0000 120 chrX:7177260-7177380 1.0000 120 chr3L:18080142-18080262 1.0000 120 chr2L:15909435-15909555 1.0000 120 chr3R:17056959-17057079 1.0000 120 chr3L:1320628-1320748 1.0000 120 chr3L:741832-741952 1.0000 120 chr3R:26831985-26832105 1.0000 120 chrX:12507755-12507875 1.0000 120 chrX:13568261-13568381 1.0000 120 chr3L:6269114-6269234 1.0000 120 chr2R:11593328-11593448 1.0000 120 chrX:6643031-6643151 1.0000 120 chr2L:1409758-1409878 1.0000 120 chr3R:24143887-24144007 1.0000 120 chrX:739947-740067 1.0000 120 chr3L:14239441-14239561 1.0000 120 chr2R:20646235-20646355 1.0000 120 chr3L:14534765-14534885 1.0000 120 chr2L:12529170-12529290 1.0000 120 chr3L:18790974-18791094 1.0000 120 chr2R:15745331-15745451 1.0000 120 chr3L:18078728-18078848 1.0000 120 chr2R:19617323-19617443 1.0000 120 chr3R:29758512-29758632 1.0000 120 chrX:4175956-4176076 1.0000 120 chr2L:5623853-5623973 1.0000 120 chr2L:8271100-8271220 1.0000 120 chr2R:8307867-8307987 1.0000 120 chr3L:14622503-14622623 1.0000 120 chr3R:8792738-8792858 1.0000 120 chr2L:13056135-13056255 1.0000 120 chr2L:6508822-6508942 1.0000 120 chr2R:11324007-11324127 1.0000 120 chrX:9466256-9466376 1.0000 120 chr3R:9389136-9389256 1.0000 120 chr3L:20632448-20632568 1.0000 120 chr3R:26535788-26535908 1.0000 120 chr3R:6352105-6352225 1.0000 120 chr3L:11448477-11448597 1.0000 120 chr2R:18907159-18907279 1.0000 120 chr3L:4619968-4620088 1.0000 120 chr3L:2879865-2879985 1.0000 120 chr3L:1829654-1829774 1.0000 120 chr3R:28544778-28544898 1.0000 120 chr2L:7899316-7899436 1.0000 120 chrX:12000333-12000453 1.0000 120 chrX:12760863-12760983 1.0000 120 chr3L:8870697-8870817 1.0000 120 chr2R:11094374-11094494 1.0000 120 chr3L:21720968-21721088 1.0000 120 chr3L:12515758-12515878 1.0000 120 chr3L:13107434-13107554 1.0000 120 chr2L:10791413-10791533 1.0000 120 chr3L:7113176-7113296 1.0000 120 chr2L:4071695-4071815 1.0000 120 chr2R:9138322-9138442 1.0000 120 chr2R:24955793-24955913 1.0000 120 chr2L:19325591-19325711 1.0000 120 chr2L:20371582-20371702 1.0000 120 chr3L:11113419-11113539 1.0000 120 chr2L:249594-249714 1.0000 120 chrX:3722369-3722489 1.0000 120 chr3L:11368558-11368678 1.0000 120 chr3R:18914057-18914177 1.0000 120 chr3L:16002475-16002595 1.0000 120 chr3L:2117165-2117285 1.0000 120 chr3L:6482994-6483114 1.0000 120 chr3R:11646973-11647093 1.0000 120 chr3L:13435309-13435429 1.0000 120 chr3L:4545845-4545965 1.0000 120 chrX:13238645-13238765 1.0000 120 chr3L:20552002-20552122 1.0000 120 chr3R:13806690-13806810 1.0000 120 chr3L:6458898-6459018 1.0000 120 chr2R:9557622-9557742 1.0000 120 chr2L:609616-609736 1.0000 120 chr2L:14619762-14619882 1.0000 120 chrX:2334722-2334842 1.0000 120 chr3L:817858-817978 1.0000 120 chr3R:8810949-8811069 1.0000 120 chr3L:7611394-7611514 1.0000 120 chr2L:19454553-19454673 1.0000 120 chr2L:2804672-2804792 1.0000 120 chrX:15320619-15320739 1.0000 120 chr3R:20284626-20284746 1.0000 120 chr3L:9367575-9367695 1.0000 120 chr3R:8939845-8939965 1.0000 120 chr3R:21935328-21935448 1.0000 120 chr3R:31680045-31680165 1.0000 120 chr3R:29778275-29778395 1.0000 120 chr2L:20463523-20463643 1.0000 120 chr3R:19924433-19924553 1.0000 120 chrX:8730440-8730560 1.0000 120 chrX:7892638-7892758 1.0000 120 chr2L:7879635-7879755 1.0000 120 chr3L:9468073-9468193 1.0000 120 chr2L:11069672-11069792 1.0000 120 chr2R:11614349-11614469 1.0000 120 chrX:4970052-4970172 1.0000 120 chr3L:10387407-10387527 1.0000 120 chr3R:28851986-28852106 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Pif1A/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Pif1A.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.329 C 0.168 G 0.171 T 0.332 Background letter frequencies (from file dataset with add-one prior applied): A 0.329 C 0.168 G 0.171 T 0.332 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCHGCHGC MEME-1 width = 8 sites = 21 llr = 204 E-value = 5.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCHGCHGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3:3::3:: pos.-specific C :a2:a3:9 probability G 7::a:1a1 matrix T ::4::3:: bits 2.6 * ** * 2.3 * ** * 2.1 * ** ** 1.8 * ** ** Relative 1.5 ** ** ** Entropy 1.3 ** ** ** (14.0 bits) 1.0 ** ** ** 0.8 ** ** ** 0.5 ** ** ** 0.3 ** ** ** 0.0 -------- Multilevel GCTGCAGC consensus A A C sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCHGCHGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:11646973-11647093 38 6.69e-07 GCACGAAGTT GCCGCCGC GACTGAGTCA chr3L:6155258-6155378 80 1.99e-06 CTCGTTTTTG GCTGCCGC ATCAACTGGG chr3R:16368449-16368569 83 3.30e-06 TTGGAATTTA GCAGCCGC TTTTAGGTAT chr3R:8792738-8792858 10 4.61e-06 GCTGCAACT GCCGCAGC AGGTTTTTTT chr3R:22140207-22140327 8 5.93e-06 GGCATTT GCCGCTGC ACTTTTTCTT chr2L:3557647-3557767 109 8.52e-06 TAGTACTGTA GCTGCAGC CGTG chr3R:30567351-30567471 12 1.11e-05 GCTCGGTGAT GCTGCTGC CCAATATACA chr3L:19349868-19349988 81 1.11e-05 CTACTTTTAG GCTGCTGC AACTATCCAA chrX:6632059-6632179 58 1.11e-05 gttgtttttt gctgctgC TTTACGGATT chr3R:28544778-28544898 1 1.37e-05 . GCAGCAGC TGACTGATAC chr2L:13665443-13665563 74 1.37e-05 GCTGGGCGCG GCAGCAGC GGCAGTTCGA chr3R:28851986-28852106 79 1.70e-05 TCTTGCTAAT GCCGCGGC TTACGTTGTA chr2L:2804672-2804792 37 2.42e-05 GCTGGACTGG ACTGCCGC TGAACTTTGG chrX:18544912-18545032 3 2.67e-05 AC ACAGCCGC AGAAGCAGAA chr2R:10558239-10558359 106 3.31e-05 CACACGACAA GCGGCAGC AAAAACA chr2L:8271100-8271220 105 4.51e-05 GATTCGACTG ACTGCTGC ATTGGAAG chr3R:24614262-24614382 18 4.51e-05 GATAGCCCAG ACTGCTGC TCATTTCTGC chr3L:9468073-9468193 81 5.14e-05 GAAACGAAAA ACAGCAGC GAAAGCAAGA chr3L:11113419-11113539 72 5.90e-05 GGCCGCGGGT GCAGCCGG CTATTTGACC chr2R:21470503-21470623 36 6.37e-05 GGTAAAAAAC GCCGCAGG CTTTTTAAAG chr2R:21061424-21061544 56 7.02e-05 GCCGACCGTC ACAGCGGC CCATGTTGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCHGCHGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:11646973-11647093 6.7e-07 37_[+1]_75 chr3L:6155258-6155378 2e-06 79_[+1]_33 chr3R:16368449-16368569 3.3e-06 82_[+1]_30 chr3R:8792738-8792858 4.6e-06 9_[+1]_103 chr3R:22140207-22140327 5.9e-06 7_[+1]_105 chr2L:3557647-3557767 8.5e-06 108_[+1]_4 chr3R:30567351-30567471 1.1e-05 11_[+1]_101 chr3L:19349868-19349988 1.1e-05 80_[+1]_32 chrX:6632059-6632179 1.1e-05 57_[+1]_55 chr3R:28544778-28544898 1.4e-05 [+1]_112 chr2L:13665443-13665563 1.4e-05 73_[+1]_39 chr3R:28851986-28852106 1.7e-05 78_[+1]_34 chr2L:2804672-2804792 2.4e-05 36_[+1]_76 chrX:18544912-18545032 2.7e-05 2_[+1]_110 chr2R:10558239-10558359 3.3e-05 105_[+1]_7 chr2L:8271100-8271220 4.5e-05 104_[+1]_8 chr3R:24614262-24614382 4.5e-05 17_[+1]_95 chr3L:9468073-9468193 5.1e-05 80_[+1]_32 chr3L:11113419-11113539 5.9e-05 71_[+1]_41 chr2R:21470503-21470623 6.4e-05 35_[+1]_77 chr2R:21061424-21061544 7e-05 55_[+1]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCHGCHGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCHGCHGC width=8 seqs=21 chr3R:11646973-11647093 ( 38) GCCGCCGC 1 chr3L:6155258-6155378 ( 80) GCTGCCGC 1 chr3R:16368449-16368569 ( 83) GCAGCCGC 1 chr3R:8792738-8792858 ( 10) GCCGCAGC 1 chr3R:22140207-22140327 ( 8) GCCGCTGC 1 chr2L:3557647-3557767 ( 109) GCTGCAGC 1 chr3R:30567351-30567471 ( 12) GCTGCTGC 1 chr3L:19349868-19349988 ( 81) GCTGCTGC 1 chrX:6632059-6632179 ( 58) GCTGCTGC 1 chr3R:28544778-28544898 ( 1) GCAGCAGC 1 chr2L:13665443-13665563 ( 74) GCAGCAGC 1 chr3R:28851986-28852106 ( 79) GCCGCGGC 1 chr2L:2804672-2804792 ( 37) ACTGCCGC 1 chrX:18544912-18545032 ( 3) ACAGCCGC 1 chr2R:10558239-10558359 ( 106) GCGGCAGC 1 chr2L:8271100-8271220 ( 105) ACTGCTGC 1 chr3R:24614262-24614382 ( 18) ACTGCTGC 1 chr3L:9468073-9468193 ( 81) ACAGCAGC 1 chr3L:11113419-11113539 ( 72) GCAGCCGG 1 chr2R:21470503-21470623 ( 36) GCCGCAGG 1 chr2R:21061424-21061544 ( 56) ACAGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCHGCHGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2496 E= 5.0e-002 -20 -1104 207 -1104 -1104 257 -1104 -1104 2 50 -184 20 -1104 -1104 255 -1104 -1104 257 -1104 -1104 2 77 -84 -22 -1104 -1104 255 -1104 -1104 243 -84 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCHGCHGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 5.0e-002 0.285714 0.000000 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.238095 0.047619 0.380952 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.285714 0.095238 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 0.904762 0.095238 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCHGCHGC MEME-1 regular expression -------------------------------------------------------------------------------- [GA]C[TAC]GC[ACT]GC -------------------------------------------------------------------------------- Time 7.55 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAA MEME-2 width = 8 sites = 65 llr = 498 E-value = 3.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A aa889aaa pos.-specific C ::::1::: probability G ::21:::: matrix T :::1:::: bits 2.6 2.3 2.1 1.8 Relative 1.5 ** *** Entropy 1.3 ** **** (11.1 bits) 1.0 *** **** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AAAAAAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:11614349-11614469 50 1.37e-04 GGGCGGGCta aaaaaaaa taaaataaaa chr3L:9468073-9468193 7 1.37e-04 TTTGCa aaaaaaaa acaaggaaaa chr3R:31680045-31680165 20 1.37e-04 TGGTCACACG AAAAAAAA CTCTAGATTT chr3L:9367575-9367695 93 1.37e-04 AACAATGCAA AAAAAAAA AAGAGAAAAA chrX:15320619-15320739 79 1.37e-04 aaaaagtgta aaaaaaaa GCAACGATTT chr3L:20552002-20552122 29 1.37e-04 GGCTGCACTG AAAAAAAA TCAAAATGCA chr3R:11646973-11647093 93 1.37e-04 gaaacgaaag aaaaaaaa acacaaaatc chr2R:24955793-24955913 24 1.37e-04 TTAAAAAGTG AAAAAAAA AAACAGAAAA chr3L:4619968-4620088 24 1.37e-04 TGATCACTTG AAAAAAAA AAGTTCTCAA chr3R:26535788-26535908 110 1.37e-04 AAAGAGACAC AAAAAAAA TGC chr2R:19617323-19617443 69 1.37e-04 ACGTTTaaaa aaaaaaaa aaaaaCTTCA chr2R:20646235-20646355 34 1.37e-04 GACGAACCaa aaaaaaaa aaaaaaagaa chr3L:14239441-14239561 6 1.37e-04 CACTA AAAAAAAA TTATTAAATA chrX:13568261-13568381 20 1.37e-04 GGGCACTTAC AAAAAAAA AATGACAAAC chr3R:24549884-24550004 74 1.37e-04 aaataaaaat aaaaaaaa caataaaaCC chrX:18544912-18545032 103 1.37e-04 aaaaacaaaa aaaaaaaa atgatacaaa chrX:11601010-11601130 77 1.37e-04 ATACATTATT AAAAAAAA ACCTTGTATC chr3L:9848868-9848988 108 1.37e-04 atacgaatgg aaaaaaaa tataa chr2R:19157699-19157819 60 1.37e-04 gaaaaaaaga aaaaaaaa aagaaCGGAG chr2R:10558239-10558359 41 1.37e-04 TAATTGATTT AAAAAAAA GAAAAGCAAA chrX:12744224-12744344 5 1.37e-04 AACA AAAAAAAA GAAGAAAACA chrX:17542897-17543017 12 1.37e-04 CAGGGCAAAA AAAAAAAA CAGATGACTA chr2L:7334379-7334499 38 1.37e-04 aaaaaaaaac aaaaaaaa actaaaaata chr3L:14456083-14456203 95 1.37e-04 aaaataatac aaaaaaaa GAGCGCGCTC chrX:11545184-11545304 99 1.37e-04 cctcgagcga aaaaaaaa agaaaagaaa chr2L:9231849-9231969 33 1.37e-04 ACAAGAGCaa aaaaaaaa gaaaaaaaga chr3R:20773318-20773438 17 1.37e-04 GGTGCACACA AAAAAAAA TCTGAGCTGC chr3R:23319082-23319202 44 1.37e-04 GAAAAAATAA AAAAAAAA TGGGGGGGGG chr2R:13473876-13473996 56 1.37e-04 GTAAATTACA AAAAAAAA AAGTAGCTTT chr3L:8013980-8014100 17 1.37e-04 CACaaaaaga aaaaaaaa ctaaaaagag chr3L:9551256-9551376 28 1.37e-04 TTGCaaaaaa aaaaaaaa ataaaaaaat chr3L:11442520-11442640 56 1.37e-04 aaacaaaaaa aaaaaaaa cgaatgaaaa chrX:3189905-3190025 4 1.37e-04 GAC aaaaaaaa aaaaaaaaac chr3R:15112378-15112498 53 1.37e-04 aaaaaaaaaa aaaaaaaa aaacaaaaca chrX:12734508-12734628 38 1.37e-04 AGGGGAGGGA AAAAAAAA CCTTAAGCAC chr2L:4359276-4359396 74 1.37e-04 TCTTTTTCCC AAAAAAAA CTAAAAACAG chr2R:15906092-15906212 98 1.37e-04 caaaagctgc aaaaaaaa aTCTGCAAAT chr3R:13524774-13524894 76 1.37e-04 AAATCGCAGC AAAAAAAA AACAAAAAAA chr3L:11368558-11368678 11 2.09e-04 gaaccaaaaa aagaaaaa aaCGCCAGCG chr2L:249594-249714 21 2.09e-04 TTGTTATAAA AAGAAAAA GATTGCACTC chr2L:20721584-20721704 80 2.09e-04 TTGTTATTGA AAGAAAAA TTTGTTCATA chr3R:31768337-31768457 84 2.09e-04 ACTGATTTTA AAGAAAAA AAGGCCCATA chr3R:27084777-27084897 59 2.09e-04 ACAGAAGTAA AAGAAAAA TCAATACAAT chr3R:31482245-31482365 10 2.09e-04 TTTCTATAT AAGAAAAA AGTGCGATTA chr3R:19075229-19075349 12 2.09e-04 CGTGCACAGC AAGAAAAA CTGGAACCTT chr3R:6214382-6214502 103 2.09e-04 TTTCTTAATC AAGAAAAA GGGTTTTTGA chr2L:20463523-20463643 107 2.79e-04 ATCTTGTTAG AAAACAAA CATTGT chr3R:13806690-13806810 91 2.79e-04 ATATACATCT AAAACAAA TTCAAAGGAA chr2L:12529170-12529290 4 2.79e-04 CAG AAAACAAA TATTGCAAAA chr2L:3012912-3013032 60 2.79e-04 GCGTGTCCTA AAAACAAA AACATAAAAA chr3L:10315001-10315121 14 2.79e-04 AGTACCCTTA AAAACAAA TACTCAAAAT chr3L:4545845-4545965 107 3.50e-04 GTCTTACTAT AAAGAAAA TAAAAT chr3L:10913345-10913465 27 3.50e-04 CATGTAATTA AAAGAAAa taagtaaaag chr2L:7879635-7879755 113 4.89e-04 GCAAATCGAA AAATAAAA chr2L:4071695-4071815 96 4.89e-04 AGGCTCCCAG AAATAAAA ATCTCCAAGA chr3R:9389136-9389256 64 4.89e-04 CCAATGAAGA AAATAAAA ACCAATGACG chr3R:29758512-29758632 24 4.89e-04 TTAAGATATA AAATAAAA CGTGTATTTC chr3L:14534765-14534885 4 4.89e-04 TAT AAATAAAA TTTAAACCAT chrX:739947-740067 52 4.89e-04 ACTGTTCACT AAATAAAA AATTATTTAC chr3L:4731874-4731994 65 4.89e-04 TCTTGGTATG AAATAAAA AGTTCTTTTA chr3R:24024337-24024457 50 5.59e-04 ATATCATTTC AACAAAAA CTTAAACGCA chr2L:14624024-14624144 33 5.59e-04 TTGAGAATGT AACAAAAA TATTTTGAAT chr2L:5398503-5398623 88 5.59e-04 TTTGGAAATA AACAAAAA TTTTGCTTGC chrX:2334722-2334842 110 6.32e-04 GTCTTGCGaa aaggaaaa cga chr3L:3555240-3555360 11 6.32e-04 TAATAAAACG AAGGAAAA TAAATCCAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:11614349-11614469 0.00014 49_[+2]_63 chr3L:9468073-9468193 0.00014 6_[+2]_106 chr3R:31680045-31680165 0.00014 19_[+2]_93 chr3L:9367575-9367695 0.00014 92_[+2]_20 chrX:15320619-15320739 0.00014 78_[+2]_34 chr3L:20552002-20552122 0.00014 28_[+2]_84 chr3R:11646973-11647093 0.00014 92_[+2]_20 chr2R:24955793-24955913 0.00014 23_[+2]_89 chr3L:4619968-4620088 0.00014 23_[+2]_89 chr3R:26535788-26535908 0.00014 109_[+2]_3 chr2R:19617323-19617443 0.00014 68_[+2]_44 chr2R:20646235-20646355 0.00014 33_[+2]_79 chr3L:14239441-14239561 0.00014 5_[+2]_107 chrX:13568261-13568381 0.00014 19_[+2]_93 chr3R:24549884-24550004 0.00014 73_[+2]_39 chrX:18544912-18545032 0.00014 102_[+2]_10 chrX:11601010-11601130 0.00014 76_[+2]_36 chr3L:9848868-9848988 0.00014 107_[+2]_5 chr2R:19157699-19157819 0.00014 59_[+2]_53 chr2R:10558239-10558359 0.00014 40_[+2]_72 chrX:12744224-12744344 0.00014 4_[+2]_108 chrX:17542897-17543017 0.00014 11_[+2]_101 chr2L:7334379-7334499 0.00014 37_[+2]_75 chr3L:14456083-14456203 0.00014 94_[+2]_18 chrX:11545184-11545304 0.00014 98_[+2]_14 chr2L:9231849-9231969 0.00014 32_[+2]_80 chr3R:20773318-20773438 0.00014 16_[+2]_96 chr3R:23319082-23319202 0.00014 43_[+2]_69 chr2R:13473876-13473996 0.00014 55_[+2]_57 chr3L:8013980-8014100 0.00014 16_[+2]_96 chr3L:9551256-9551376 0.00014 27_[+2]_85 chr3L:11442520-11442640 0.00014 55_[+2]_57 chrX:3189905-3190025 0.00014 3_[+2]_109 chr3R:15112378-15112498 0.00014 52_[+2]_60 chrX:12734508-12734628 0.00014 37_[+2]_75 chr2L:4359276-4359396 0.00014 73_[+2]_39 chr2R:15906092-15906212 0.00014 97_[+2]_15 chr3R:13524774-13524894 0.00014 75_[+2]_37 chr3L:11368558-11368678 0.00021 10_[+2]_102 chr2L:249594-249714 0.00021 20_[+2]_92 chr2L:20721584-20721704 0.00021 79_[+2]_33 chr3R:31768337-31768457 0.00021 83_[+2]_29 chr3R:27084777-27084897 0.00021 58_[+2]_54 chr3R:31482245-31482365 0.00021 9_[+2]_103 chr3R:19075229-19075349 0.00021 11_[+2]_101 chr3R:6214382-6214502 0.00021 102_[+2]_10 chr2L:20463523-20463643 0.00028 106_[+2]_6 chr3R:13806690-13806810 0.00028 90_[+2]_22 chr2L:12529170-12529290 0.00028 3_[+2]_109 chr2L:3012912-3013032 0.00028 59_[+2]_53 chr3L:10315001-10315121 0.00028 13_[+2]_99 chr3L:4545845-4545965 0.00035 106_[+2]_6 chr3L:10913345-10913465 0.00035 26_[+2]_86 chr2L:7879635-7879755 0.00049 112_[+2] chr2L:4071695-4071815 0.00049 95_[+2]_17 chr3R:9389136-9389256 0.00049 63_[+2]_49 chr3R:29758512-29758632 0.00049 23_[+2]_89 chr3L:14534765-14534885 0.00049 3_[+2]_109 chrX:739947-740067 0.00049 51_[+2]_61 chr3L:4731874-4731994 0.00049 64_[+2]_48 chr3R:24024337-24024457 0.00056 49_[+2]_63 chr2L:14624024-14624144 0.00056 32_[+2]_80 chr2L:5398503-5398623 0.00056 87_[+2]_25 chrX:2334722-2334842 0.00063 109_[+2]_3 chr3L:3555240-3555360 0.00063 10_[+2]_102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAA width=8 seqs=65 chr2R:11614349-11614469 ( 50) AAAAAAAA 1 chr3L:9468073-9468193 ( 7) AAAAAAAA 1 chr3R:31680045-31680165 ( 20) AAAAAAAA 1 chr3L:9367575-9367695 ( 93) AAAAAAAA 1 chrX:15320619-15320739 ( 79) AAAAAAAA 1 chr3L:20552002-20552122 ( 29) AAAAAAAA 1 chr3R:11646973-11647093 ( 93) AAAAAAAA 1 chr2R:24955793-24955913 ( 24) AAAAAAAA 1 chr3L:4619968-4620088 ( 24) AAAAAAAA 1 chr3R:26535788-26535908 ( 110) AAAAAAAA 1 chr2R:19617323-19617443 ( 69) AAAAAAAA 1 chr2R:20646235-20646355 ( 34) AAAAAAAA 1 chr3L:14239441-14239561 ( 6) AAAAAAAA 1 chrX:13568261-13568381 ( 20) AAAAAAAA 1 chr3R:24549884-24550004 ( 74) AAAAAAAA 1 chrX:18544912-18545032 ( 103) AAAAAAAA 1 chrX:11601010-11601130 ( 77) AAAAAAAA 1 chr3L:9848868-9848988 ( 108) AAAAAAAA 1 chr2R:19157699-19157819 ( 60) AAAAAAAA 1 chr2R:10558239-10558359 ( 41) AAAAAAAA 1 chrX:12744224-12744344 ( 5) AAAAAAAA 1 chrX:17542897-17543017 ( 12) AAAAAAAA 1 chr2L:7334379-7334499 ( 38) AAAAAAAA 1 chr3L:14456083-14456203 ( 95) AAAAAAAA 1 chrX:11545184-11545304 ( 99) AAAAAAAA 1 chr2L:9231849-9231969 ( 33) AAAAAAAA 1 chr3R:20773318-20773438 ( 17) AAAAAAAA 1 chr3R:23319082-23319202 ( 44) AAAAAAAA 1 chr2R:13473876-13473996 ( 56) AAAAAAAA 1 chr3L:8013980-8014100 ( 17) AAAAAAAA 1 chr3L:9551256-9551376 ( 28) AAAAAAAA 1 chr3L:11442520-11442640 ( 56) AAAAAAAA 1 chrX:3189905-3190025 ( 4) AAAAAAAA 1 chr3R:15112378-15112498 ( 53) AAAAAAAA 1 chrX:12734508-12734628 ( 38) AAAAAAAA 1 chr2L:4359276-4359396 ( 74) AAAAAAAA 1 chr2R:15906092-15906212 ( 98) AAAAAAAA 1 chr3R:13524774-13524894 ( 76) AAAAAAAA 1 chr3L:11368558-11368678 ( 11) AAGAAAAA 1 chr2L:249594-249714 ( 21) AAGAAAAA 1 chr2L:20721584-20721704 ( 80) AAGAAAAA 1 chr3R:31768337-31768457 ( 84) AAGAAAAA 1 chr3R:27084777-27084897 ( 59) AAGAAAAA 1 chr3R:31482245-31482365 ( 10) AAGAAAAA 1 chr3R:19075229-19075349 ( 12) AAGAAAAA 1 chr3R:6214382-6214502 ( 103) AAGAAAAA 1 chr2L:20463523-20463643 ( 107) AAAACAAA 1 chr3R:13806690-13806810 ( 91) AAAACAAA 1 chr2L:12529170-12529290 ( 4) AAAACAAA 1 chr2L:3012912-3013032 ( 60) AAAACAAA 1 chr3L:10315001-10315121 ( 14) AAAACAAA 1 chr3L:4545845-4545965 ( 107) AAAGAAAA 1 chr3L:10913345-10913465 ( 27) AAAGAAAA 1 chr2L:7879635-7879755 ( 113) AAATAAAA 1 chr2L:4071695-4071815 ( 96) AAATAAAA 1 chr3R:9389136-9389256 ( 64) AAATAAAA 1 chr3R:29758512-29758632 ( 24) AAATAAAA 1 chr3L:14534765-14534885 ( 4) AAATAAAA 1 chrX:739947-740067 ( 52) AAATAAAA 1 chr3L:4731874-4731994 ( 65) AAATAAAA 1 chr3R:24024337-24024457 ( 50) AACAAAAA 1 chr2L:14624024-14624144 ( 33) AACAAAAA 1 chr2L:5398503-5398623 ( 88) AACAAAAA 1 chrX:2334722-2334842 ( 110) AAGGAAAA 1 chr3L:3555240-3555360 ( 11) AAGGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.0953 E= 3.5e-002 160 -1267 -1267 -1267 160 -1267 -1267 -1267 128 -186 -15 -1267 133 -1267 -147 -162 149 -113 -1267 -1267 160 -1267 -1267 -1267 160 -1267 -1267 -1267 160 -1267 -1267 -1267 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 3.5e-002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.046154 0.153846 0.000000 0.830769 0.000000 0.061538 0.107692 0.923077 0.076923 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 regular expression -------------------------------------------------------------------------------- AAAAAAAA -------------------------------------------------------------------------------- Time 13.88 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGRGCGR MEME-3 width = 8 sites = 10 llr = 110 E-value = 1.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGRGCGR MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::5:::6 pos.-specific C :921:a:: probability G a184a:a4 matrix T :::::::: bits 2.6 * *** 2.3 * *** 2.1 ** *** 1.8 *** *** Relative 1.5 *** *** Entropy 1.3 *** *** (15.9 bits) 1.0 *** **** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGAGCGA consensus CG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGRGCGR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:18544912-18545032 71 2.06e-06 CCCCAACTGG GCGGGCGA GGaaaaaaga chrX:11601010-11601130 1 2.06e-06 . GCGGGCGA AAACCGACAC chr3L:13435309-13435429 106 3.42e-06 CACTCGGTGG GCGAGCGG GTGGTTG chr2L:13665443-13665563 101 3.42e-06 ACGTGAACTC GCGAGCGG CCAACACGTA chrX:2334722-2334842 61 6.03e-06 AGGTGGAAGT GCGAGCGA GACAGCAAAG chr3R:14717367-14717487 113 6.03e-06 TATCTACTCT GCGAGCGA chr3L:5943653-5943773 4 7.42e-06 ATT GCCGGCGG ACGAAACAAG chr3L:9848868-9848988 18 8.75e-06 AGCATGAAAC GCGCGCGA ATTAATGAGG chr3L:11368558-11368678 22 1.40e-05 agaaaaaaaC GCCAGCGA CGACGGTGAA chr3L:14456083-14456203 19 1.47e-05 TGGTCATTGA GGGGGCGG GCCGGGGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGRGCGR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:18544912-18545032 2.1e-06 70_[+3]_42 chrX:11601010-11601130 2.1e-06 [+3]_112 chr3L:13435309-13435429 3.4e-06 105_[+3]_7 chr2L:13665443-13665563 3.4e-06 100_[+3]_12 chrX:2334722-2334842 6e-06 60_[+3]_52 chr3R:14717367-14717487 6e-06 112_[+3] chr3L:5943653-5943773 7.4e-06 3_[+3]_109 chr3L:9848868-9848988 8.8e-06 17_[+3]_95 chr3L:11368558-11368678 1.4e-05 21_[+3]_91 chr3L:14456083-14456203 1.5e-05 18_[+3]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGRGCGR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGRGCGR width=8 seqs=10 chrX:18544912-18545032 ( 71) GCGGGCGA 1 chrX:11601010-11601130 ( 1) GCGGGCGA 1 chr3L:13435309-13435429 ( 106) GCGAGCGG 1 chr2L:13665443-13665563 ( 101) GCGAGCGG 1 chrX:2334722-2334842 ( 61) GCGAGCGA 1 chr3R:14717367-14717487 ( 113) GCGAGCGA 1 chr3L:5943653-5943773 ( 4) GCCGGCGG 1 chr3L:9848868-9848988 ( 18) GCGCGCGA 1 chr3L:11368558-11368678 ( 22) GCCAGCGA 1 chr3L:14456083-14456203 ( 19) GGGGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGRGCGR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 1.5e+002 -997 -997 255 -997 -997 242 -77 -997 -997 25 223 -997 60 -75 123 -997 -997 -997 255 -997 -997 257 -997 -997 -997 -997 255 -997 86 -997 123 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGRGCGR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.5e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.000000 0.200000 0.800000 0.000000 0.500000 0.100000 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.600000 0.000000 0.400000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGRGCGR MEME-3 regular expression -------------------------------------------------------------------------------- GC[GC][AG]GCG[AG] -------------------------------------------------------------------------------- Time 20.05 secs. ******************************************************************************** ******************************************************************************** MOTIF SCCACCGC MEME-4 width = 8 sites = 3 llr = 39 E-value = 3.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCCACCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C 7aa:aa:a probability G 3:::::a: matrix T :::::::: bits 2.6 ** **** 2.3 ** **** 2.1 ** **** 1.8 ** **** Relative 1.5 ******** Entropy 1.3 ******** (18.7 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCCACCGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCACCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:13435309-13435429 9 1.26e-06 TTTCACTT CCCACCGC CCCCACGGAT chr3R:8792738-8792858 69 1.26e-06 TTTTTTCATG CCCACCGC TTATCGACGC chr3L:12515758-12515878 71 2.55e-06 TGCAATTGCC GCCACCGC TCTCTCCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCACCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:13435309-13435429 1.3e-06 8_[+4]_104 chr3R:8792738-8792858 1.3e-06 68_[+4]_44 chr3L:12515758-12515878 2.6e-06 70_[+4]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCACCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCCACCGC width=8 seqs=3 chr3L:13435309-13435429 ( 9) CCCACCGC 1 chr3R:8792738-8792858 ( 69) CCCACCGC 1 chr3L:12515758-12515878 ( 71) GCCACCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCACCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 3.6e+003 -823 199 96 -823 -823 257 -823 -823 -823 257 -823 -823 160 -823 -823 -823 -823 257 -823 -823 -823 257 -823 -823 -823 -823 255 -823 -823 257 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCACCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.6e+003 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCACCGC MEME-4 regular expression -------------------------------------------------------------------------------- [CG]CCACCGC -------------------------------------------------------------------------------- Time 26.23 secs. ******************************************************************************** ******************************************************************************** MOTIF STGCACTK MEME-5 width = 8 sites = 25 llr = 223 E-value = 1.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif STGCACTK MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a:2: pos.-specific C 5::a:8:: probability G 51a::2:5 matrix T :9::::84 bits 2.6 ** 2.3 ** 2.1 ** * 1.8 ** * Relative 1.5 **** Entropy 1.3 ****** (12.9 bits) 1.0 ****** * 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTGCACTG consensus G AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGCACTK MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:4970052-4970172 90 1.01e-05 ATTGTAAACT GTGCACTG CTTGTAAACA chr3L:20552002-20552122 21 1.01e-05 GGAACACGGG CTGCACTG AAAAAAAATC chr3R:8847429-8847549 88 1.01e-05 ATTATGCGAA CTGCACTG TGGGTAGTTA chr3L:10648527-10648647 53 1.01e-05 AAATGCAGCG CTGCACTG AAAGATTAAG chr3R:18624665-18624785 12 1.01e-05 AAATCGGTAC GTGCACTG ACCAAAAACT chr3L:13107434-13107554 60 2.98e-05 AATCCTAGAA CTGCACTT ATGGGAACAA chr2R:21389318-21389438 31 2.98e-05 AAGCTGTCTT GTGCACTT TGCCCCCCCA chr3R:5694600-5694720 104 2.98e-05 AAATAATACA CTGCACTT TTGAATAGT chr2R:13023087-13023207 97 2.98e-05 ctttttttGT GTGCACTT CTCGAACGGG chr3L:21364177-21364297 30 2.98e-05 ACGGCGACAA CTGCACTT GCAAGTTGCA chr3R:21704601-21704721 90 3.99e-05 AACCAGTTGG GTGCACAG GTTCAGGTTC chr3R:19075229-19075349 3 3.99e-05 TC GTGCACAG CAAGAAAAAC chr2L:20340728-20340848 33 3.99e-05 GGAATATTAT GTGCACAG TAATCAAACG chr3L:8813583-8813703 42 4.51e-05 GTTTCTGCGA GGGCACTG CAAGAAATTG chr3L:21720968-21721088 15 5.55e-05 CGAACAGAAT CTGCAGTG ATATTATATT chr2R:19617323-19617443 90 5.55e-05 aaCTTCAGCG CTGCAGTG CAAAAATTTC chr2R:12767404-12767524 103 5.55e-05 AGTGCATTTG GTGCAGTG TCTGCAGCAG chr3R:20284626-20284746 85 7.50e-05 ATATATTTTT CTGCACAT GGACGGGGTT chr2L:20821588-20821708 93 7.50e-05 ACATATGCAA GTGCACAT CAACTCCCAC chr2R:15906092-15906212 24 7.50e-05 GGCAAAAAAT CTGCACAT TCAAAACAGT chrX:13568261-13568381 10 8.51e-05 GACGTCAGA GGGCACTT ACAAAAAAAA chr2R:18356019-18356139 56 8.51e-05 CACGAAAAAA CGGCACTT TGAGTAAGGC chr3L:18080142-18080262 53 1.20e-04 CTCTTTTTTT CTGCAGTT TGTTATGTTT chr3R:27167517-27167637 112 1.20e-04 TTTTTTTCCA GTGCACTC C chr2L:7071899-7072019 58 1.46e-04 TGTATTATTG TTGCACTG TTAAAAAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGCACTK MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4970052-4970172 1e-05 89_[+5]_23 chr3L:20552002-20552122 1e-05 20_[+5]_92 chr3R:8847429-8847549 1e-05 87_[+5]_25 chr3L:10648527-10648647 1e-05 52_[+5]_60 chr3R:18624665-18624785 1e-05 11_[+5]_101 chr3L:13107434-13107554 3e-05 59_[+5]_53 chr2R:21389318-21389438 3e-05 30_[+5]_82 chr3R:5694600-5694720 3e-05 103_[+5]_9 chr2R:13023087-13023207 3e-05 96_[+5]_16 chr3L:21364177-21364297 3e-05 29_[+5]_83 chr3R:21704601-21704721 4e-05 89_[+5]_23 chr3R:19075229-19075349 4e-05 2_[+5]_110 chr2L:20340728-20340848 4e-05 32_[+5]_80 chr3L:8813583-8813703 4.5e-05 41_[+5]_71 chr3L:21720968-21721088 5.5e-05 14_[+5]_98 chr2R:19617323-19617443 5.5e-05 89_[+5]_23 chr2R:12767404-12767524 5.5e-05 102_[+5]_10 chr3R:20284626-20284746 7.5e-05 84_[+5]_28 chr2L:20821588-20821708 7.5e-05 92_[+5]_20 chr2R:15906092-15906212 7.5e-05 23_[+5]_89 chrX:13568261-13568381 8.5e-05 9_[+5]_103 chr2R:18356019-18356139 8.5e-05 55_[+5]_57 chr3L:18080142-18080262 0.00012 52_[+5]_60 chr3R:27167517-27167637 0.00012 111_[+5]_1 chr2L:7071899-7072019 0.00015 57_[+5]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGCACTK MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STGCACTK width=8 seqs=25 chrX:4970052-4970172 ( 90) GTGCACTG 1 chr3L:20552002-20552122 ( 21) CTGCACTG 1 chr3R:8847429-8847549 ( 88) CTGCACTG 1 chr3L:10648527-10648647 ( 53) CTGCACTG 1 chr3R:18624665-18624785 ( 12) GTGCACTG 1 chr3L:13107434-13107554 ( 60) CTGCACTT 1 chr2R:21389318-21389438 ( 31) GTGCACTT 1 chr3R:5694600-5694720 ( 104) CTGCACTT 1 chr2R:13023087-13023207 ( 97) GTGCACTT 1 chr3L:21364177-21364297 ( 30) CTGCACTT 1 chr3R:21704601-21704721 ( 90) GTGCACAG 1 chr3R:19075229-19075349 ( 3) GTGCACAG 1 chr2L:20340728-20340848 ( 33) GTGCACAG 1 chr3L:8813583-8813703 ( 42) GGGCACTG 1 chr3L:21720968-21721088 ( 15) CTGCAGTG 1 chr2R:19617323-19617443 ( 90) CTGCAGTG 1 chr2R:12767404-12767524 ( 103) GTGCAGTG 1 chr3R:20284626-20284746 ( 85) CTGCACAT 1 chr2L:20821588-20821708 ( 93) GTGCACAT 1 chr2R:15906092-15906212 ( 24) CTGCACAT 1 chrX:13568261-13568381 ( 10) GGGCACTT 1 chr2R:18356019-18356139 ( 56) CGGCACTT 1 chr3L:18080142-18080262 ( 53) CTGCAGTT 1 chr3R:27167517-27167637 ( 112) GTGCACTC 1 chr2L:7071899-7072019 ( 58) TTGCACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGCACTK MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6312 E= 1.8e+004 -1129 152 149 -305 -1129 -1129 -51 140 -1129 -1129 255 -1129 -1129 257 -1129 -1129 160 -1129 -1129 -1129 -1129 232 -9 -1129 -46 -1129 -1129 119 -1129 -207 161 41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGCACTK MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.8e+004 0.000000 0.480000 0.480000 0.040000 0.000000 0.000000 0.120000 0.880000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.840000 0.160000 0.000000 0.240000 0.000000 0.000000 0.760000 0.000000 0.040000 0.520000 0.440000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGCACTK MEME-5 regular expression -------------------------------------------------------------------------------- [CG]TGCAC[TA][GT] -------------------------------------------------------------------------------- Time 32.49 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:14572164-14572284 7.22e-01 120 chr3L:21364177-21364297 2.79e-02 29_[+5(2.98e-05)]_83 chr2L:5398503-5398623 2.74e-01 120 chr2R:13023087-13023207 5.96e-03 96_[+5(2.98e-05)]_5_[+3(6.68e-05)]_\ 3 chr3R:13524774-13524894 1.35e-02 120 chr2L:7971523-7971643 1.00e+00 120 chrX:13936362-13936482 9.89e-01 120 chr2L:11051790-11051910 7.89e-01 120 chrX:6632059-6632179 8.23e-03 57_[+1(1.11e-05)]_55 chr4:829995-830115 8.94e-01 120 chr3R:19074378-19074498 6.99e-01 120 chr2R:15906092-15906212 8.41e-03 23_[+5(7.50e-05)]_89 chrX:4965823-4965943 6.42e-01 120 chr3R:18624665-18624785 1.44e-01 11_[+5(1.01e-05)]_101 chr3L:8813583-8813703 2.55e-03 41_[+5(4.51e-05)]_71 chr2L:4359276-4359396 3.06e-01 120 chr2R:11315570-11315690 9.91e-01 120 chr2R:22119799-22119919 8.99e-01 120 chr3R:14684095-14684215 9.25e-01 120 chr3R:6214382-6214502 3.08e-01 120 chr2R:20209361-20209481 9.97e-01 120 chrX:12734508-12734628 4.34e-02 120 chr2R:18300955-18301075 4.26e-01 120 chr2L:4797692-4797812 9.00e-01 120 chr3R:14557547-14557667 9.04e-01 120 chr3L:6155258-6155378 3.64e-03 79_[+1(1.99e-06)]_33 chr3L:21080595-21080715 6.06e-01 120 chr2L:11052558-11052678 6.37e-01 120 chr3R:15112378-15112498 5.32e-02 120 chr2L:19936262-19936382 1.11e-01 101_[+4(8.83e-05)]_11 chr3R:5839101-5839221 6.33e-02 120 chr3L:5943653-5943773 2.15e-03 3_[+3(7.42e-06)]_109 chr3L:10315001-10315121 2.12e-01 120 chr2L:20340728-20340848 1.96e-01 32_[+5(3.99e-05)]_80 chr3R:16368449-16368569 2.57e-04 82_[+1(3.30e-06)]_30 chr3R:19075229-19075349 1.11e-02 2_[+5(3.99e-05)]_110 chr3R:31314617-31314737 4.63e-01 120 chr3R:30014048-30014168 5.99e-01 120 chrX:3189905-3190025 3.50e-02 120 chr3L:13878029-13878149 7.61e-01 120 chr3L:10648527-10648647 1.13e-02 52_[+5(1.01e-05)]_60 chr2R:12767404-12767524 3.36e-02 102_[+5(5.55e-05)]_10 chrX:10581600-10581720 8.76e-01 120 chr3L:11442520-11442640 6.35e-02 120 chr3L:9551256-9551376 2.99e-01 120 chr3R:19104274-19104394 3.91e-01 120 chr3R:14775556-14775676 9.85e-01 120 chr3R:14765473-14765593 8.89e-01 120 chr2R:11262614-11262734 1.64e-01 120 chr3R:21704601-21704721 4.05e-02 89_[+5(3.99e-05)]_23 chr3L:8013980-8014100 3.90e-01 120 chr2R:13473876-13473996 2.86e-02 120 chr3R:30326776-30326896 2.64e-01 120 chr2L:3557647-3557767 8.09e-03 27_[+1(2.92e-05)]_73_[+1(8.52e-06)]_\ 4 chr3L:20635712-20635832 2.23e-01 120 chr3R:23319082-23319202 5.10e-02 120 chr2L:13482388-13482508 5.51e-01 120 chr3R:28025408-28025528 1.84e-01 120 chr3R:10588823-10588943 5.67e-01 120 chr3L:16153270-16153390 2.77e-02 120 chr3R:20773318-20773438 4.11e-02 120 chrX:21044568-21044688 6.86e-01 120 chr3R:31482245-31482365 9.30e-02 120 chr2L:14624024-14624144 3.58e-01 120 chr2R:21061424-21061544 2.50e-02 55_[+1(7.02e-05)]_57 chr2L:9231849-9231969 5.67e-02 120 chr2R:10656104-10656224 3.92e-01 120 chr3R:24024337-24024457 1.13e-01 120 chr3L:10913345-10913465 2.43e-01 120 chrX:11545184-11545304 5.40e-03 120 chr3L:14456083-14456203 2.99e-03 18_[+3(1.47e-05)]_94 chr2L:1387921-1388041 5.83e-01 120 chr2L:19193812-19193932 9.75e-01 120 chrX:8255086-8255206 9.75e-01 120 chr3L:10352268-10352388 3.51e-01 120 chr2R:21470503-21470623 1.39e-02 35_[+1(6.37e-05)]_77 chrX:10933919-10934039 1.64e-01 120 chr3R:27084777-27084897 5.30e-01 120 chr2L:13665443-13665563 1.57e-05 73_[+1(1.37e-05)]_19_[+3(3.42e-06)]_\ 12 chr3L:19349868-19349988 1.47e-04 10_[+1(5.90e-05)]_30_[+3(2.62e-05)]_\ 24_[+1(1.11e-05)]_32 chr3L:3555240-3555360 3.72e-01 120 chr3L:12058565-12058685 1.00e+00 120 chr2R:15740757-15740877 2.33e-01 120 chr2L:7334379-7334499 7.49e-02 120 chr3R:5694600-5694720 9.76e-02 103_[+5(2.98e-05)]_9 chr3R:21089578-21089698 8.21e-02 120 chr3L:4731874-4731994 6.51e-01 120 chr2R:19964377-19964497 1.13e-01 120 chr3L:19190895-19191015 8.11e-01 120 chr3R:31768337-31768457 3.99e-01 120 chrX:2358305-2358425 1.60e-02 120 chrX:15618068-15618188 4.36e-01 120 chr3R:14717367-14717487 2.76e-02 112_[+3(6.03e-06)] chr2R:10474732-10474852 5.61e-01 120 chr3L:5637630-5637750 9.97e-01 120 chr3R:22400409-22400529 2.52e-01 120 chr3R:11806865-11806985 3.47e-01 120 chr2L:3012912-3013032 5.40e-01 120 chr2R:7848677-7848797 3.83e-01 120 chr2R:6521241-6521361 7.61e-01 120 chr2L:7071899-7072019 9.54e-03 120 chrX:17542897-17543017 2.59e-01 120 chr3L:3444395-3444515 7.58e-01 120 chr2R:20580858-20580978 3.73e-01 120 chrX:12744224-12744344 5.41e-02 120 chr2R:18901737-18901857 9.29e-01 120 chr2R:14345454-14345574 7.75e-01 120 chr3R:29280728-29280848 9.13e-01 120 chr3L:12030612-12030732 7.71e-01 120 chr3R:16119610-16119730 6.48e-01 120 chr3R:27167517-27167637 2.43e-01 120 chr2R:10558239-10558359 4.00e-03 105_[+1(3.31e-05)]_7 chr2L:20821588-20821708 1.36e-01 92_[+5(7.50e-05)]_20 chr2R:19157699-19157819 3.17e-03 120 chr3R:24614262-24614382 5.56e-02 17_[+1(4.51e-05)]_95 chr3R:26500547-26500667 6.76e-01 120 chr3L:166607-166727 4.81e-01 120 chr3L:9848868-9848988 9.41e-04 17_[+3(8.75e-06)]_95 chr3L:7632943-7633063 8.74e-01 120 chrX:11601010-11601130 1.58e-03 [+3(2.06e-06)]_112 chr2R:16212920-16213040 9.15e-01 120 chr2L:20721584-20721704 5.11e-01 120 chr3R:30567351-30567471 1.77e-02 11_[+1(1.11e-05)]_101 chr3L:539903-540023 8.95e-02 120 chr2L:5225750-5225870 3.86e-01 120 chr2R:21543370-21543490 4.42e-02 120 chrX:9468447-9468567 7.03e-01 120 chrX:13406424-13406544 7.95e-03 120 chr3L:787737-787857 8.35e-01 120 chr3L:623680-623800 9.83e-01 120 chr2L:10231327-10231447 1.79e-01 120 chr3R:22140207-22140327 4.57e-04 7_[+1(5.93e-06)]_105 chr3R:18469615-18469735 9.15e-01 120 chr3R:15631053-15631173 5.19e-01 120 chr3L:2575335-2575455 7.00e-01 120 chrX:18544912-18545032 4.08e-06 2_[+1(2.67e-05)]_60_[+3(2.06e-06)]_\ 42 chrX:13747829-13747949 9.16e-02 120 chr3L:19315019-19315139 8.59e-01 120 chr3L:20612965-20613085 7.20e-01 120 chr3R:24549884-24550004 2.37e-01 120 chr3R:24261768-24261888 7.90e-01 120 chr2L:7949919-7950039 2.92e-01 120 chr2R:8358040-8358160 4.85e-01 120 chr2R:21389318-21389438 1.40e-02 30_[+5(2.98e-05)]_82 chr3R:21823159-21823279 2.07e-02 61_[+4(4.76e-05)]_51 chr3R:8847429-8847549 3.04e-02 87_[+5(1.01e-05)]_25 chr2R:18356019-18356139 2.46e-02 55_[+5(8.51e-05)]_57 chr2R:18314490-18314610 2.71e-01 120 chr3L:8881978-8882098 9.84e-01 120 chrX:7177260-7177380 6.30e-01 120 chr3L:18080142-18080262 3.52e-01 120 chr2L:15909435-15909555 9.59e-01 120 chr3R:17056959-17057079 3.37e-01 120 chr3L:1320628-1320748 5.08e-01 120 chr3L:741832-741952 9.91e-01 120 chr3R:26831985-26832105 3.86e-01 120 chrX:12507755-12507875 6.92e-01 120 chrX:13568261-13568381 1.49e-02 9_[+5(8.51e-05)]_103 chr3L:6269114-6269234 7.10e-01 120 chr2R:11593328-11593448 2.35e-01 120 chrX:6643031-6643151 9.41e-01 120 chr2L:1409758-1409878 2.92e-01 120 chr3R:24143887-24144007 2.25e-01 120 chrX:739947-740067 1.61e-01 120 chr3L:14239441-14239561 3.08e-01 120 chr2R:20646235-20646355 7.63e-02 120 chr3L:14534765-14534885 7.34e-01 120 chr2L:12529170-12529290 1.02e-01 120 chr3L:18790974-18791094 1.94e-01 120 chr2R:15745331-15745451 4.57e-02 120 chr3L:18078728-18078848 6.82e-01 120 chr2R:19617323-19617443 2.56e-03 89_[+5(5.55e-05)]_23 chr3R:29758512-29758632 6.11e-01 120 chrX:4175956-4176076 2.87e-02 71_[+4(8.83e-05)]_41 chr2L:5623853-5623973 5.07e-02 120 chr2L:8271100-8271220 3.44e-02 104_[+1(4.51e-05)]_8 chr2R:8307867-8307987 9.72e-01 120 chr3L:14622503-14622623 5.52e-01 120 chr3R:8792738-8792858 2.80e-05 9_[+1(4.61e-06)]_51_[+4(1.26e-06)]_\ 44 chr2L:13056135-13056255 7.35e-01 120 chr2L:6508822-6508942 9.24e-01 120 chr2R:11324007-11324127 7.73e-01 120 chrX:9466256-9466376 1.30e-01 120 chr3R:9389136-9389256 2.33e-02 120 chr3L:20632448-20632568 6.44e-01 120 chr3R:26535788-26535908 1.22e-02 120 chr3R:6352105-6352225 6.60e-01 120 chr3L:11448477-11448597 2.41e-01 120 chr2R:18907159-18907279 1.00e+00 120 chr3L:4619968-4620088 7.07e-02 120 chr3L:2879865-2879985 9.89e-01 120 chr3L:1829654-1829774 1.92e-01 120 chr3R:28544778-28544898 3.09e-03 [+1(1.37e-05)]_112 chr2L:7899316-7899436 8.20e-02 120 chrX:12000333-12000453 3.43e-01 120 chrX:12760863-12760983 9.94e-01 120 chr3L:8870697-8870817 9.93e-01 120 chr2R:11094374-11094494 7.98e-01 120 chr3L:21720968-21721088 4.58e-02 14_[+5(5.55e-05)]_98 chr3L:12515758-12515878 5.60e-04 70_[+4(2.55e-06)]_42 chr3L:13107434-13107554 1.65e-01 59_[+5(2.98e-05)]_53 chr2L:10791413-10791533 7.22e-01 120 chr3L:7113176-7113296 9.15e-01 120 chr2L:4071695-4071815 7.38e-01 120 chr2R:9138322-9138442 3.13e-01 120 chr2R:24955793-24955913 9.05e-02 120 chr2L:19325591-19325711 9.88e-01 120 chr2L:20371582-20371702 9.58e-01 120 chr3L:11113419-11113539 3.37e-03 61_[+3(3.09e-05)]_2_[+1(5.90e-05)]_\ 41 chr2L:249594-249714 4.66e-02 120 chrX:3722369-3722489 6.92e-01 120 chr3L:11368558-11368678 4.83e-04 21_[+3(1.40e-05)]_91 chr3R:18914057-18914177 1.90e-01 120 chr3L:16002475-16002595 5.69e-01 120 chr3L:2117165-2117285 9.80e-01 120 chr3L:6482994-6483114 2.92e-01 120 chr3R:11646973-11647093 4.44e-06 37_[+1(6.69e-07)]_75 chr3L:13435309-13435429 1.43e-05 8_[+4(1.26e-06)]_89_[+3(3.42e-06)]_\ 7 chr3L:4545845-4545965 1.72e-01 120 chrX:13238645-13238765 1.00e+00 120 chr3L:20552002-20552122 2.36e-03 20_[+5(1.01e-05)]_92 chr3R:13806690-13806810 4.05e-01 120 chr3L:6458898-6459018 9.98e-01 120 chr2R:9557622-9557742 3.45e-01 120 chr2L:609616-609736 8.10e-01 120 chr2L:14619762-14619882 6.11e-01 120 chrX:2334722-2334842 1.26e-04 [+3(3.83e-05)]_52_[+3(6.03e-06)]_52 chr3L:817858-817978 8.11e-01 120 chr3R:8810949-8811069 6.67e-01 120 chr3L:7611394-7611514 9.41e-01 120 chr2L:19454553-19454673 9.84e-01 120 chr2L:2804672-2804792 2.25e-05 36_[+1(2.42e-05)]_34_[+4(4.76e-05)]_\ 34 chrX:15320619-15320739 3.36e-01 120 chr3R:20284626-20284746 1.34e-01 84_[+5(7.50e-05)]_28 chr3L:9367575-9367695 4.36e-03 120 chr3R:8939845-8939965 1.81e-01 120 chr3R:21935328-21935448 1.50e-01 120 chr3R:31680045-31680165 6.82e-02 120 chr3R:29778275-29778395 8.78e-01 120 chr2L:20463523-20463643 5.00e-01 120 chr3R:19924433-19924553 4.12e-01 120 chrX:8730440-8730560 6.51e-01 120 chrX:7892638-7892758 9.95e-01 120 chr2L:7879635-7879755 6.33e-02 120 chr3L:9468073-9468193 3.58e-03 80_[+1(5.14e-05)]_32 chr2L:11069672-11069792 9.87e-01 120 chr2R:11614349-11614469 5.27e-03 120 chrX:4970052-4970172 5.12e-02 89_[+5(1.01e-05)]_23 chr3L:10387407-10387527 7.52e-02 120 chr3R:28851986-28852106 5.84e-03 78_[+1(1.70e-05)]_34 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************