******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Pdp1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:23382760-23382880 1.0000 120 chr3R:23942185-23942305 1.0000 120 chr2L:18858800-18858920 1.0000 120 chr2R:18409723-18409843 1.0000 120 chr2R:25086037-25086157 1.0000 120 chr2L:4995149-4995269 1.0000 120 chr3R:27135101-27135221 1.0000 120 chr3L:16147467-16147587 1.0000 120 chr3L:21283934-21284054 1.0000 120 chr2R:11451184-11451304 1.0000 120 chr2R:9430193-9430313 1.0000 120 chr3R:28875451-28875571 1.0000 120 chr2R:6008545-6008665 1.0000 120 chr3L:7822314-7822434 1.0000 120 chr3R:9674335-9674455 1.0000 120 chr3R:10270171-10270291 1.0000 120 chr3L:15162144-15162264 1.0000 120 chr2L:10386963-10387083 1.0000 120 chr3R:31969579-31969699 1.0000 120 chrX:8569778-8569898 1.0000 120 chr2R:19466938-19467058 1.0000 120 chrX:7702299-7702419 1.0000 120 chrX:7340097-7340217 1.0000 120 chrX:2792037-2792157 1.0000 120 chr2L:204696-204816 1.0000 120 chr3R:26897450-26897570 1.0000 120 chrX:15950195-15950315 1.0000 120 chr3R:5458766-5458886 1.0000 120 chr2L:2986915-2987035 1.0000 120 chr2L:10751352-10751472 1.0000 120 chr3R:9141053-9141173 1.0000 120 chr3L:7810565-7810685 1.0000 120 chr3R:6107492-6107612 1.0000 120 chr3L:11705041-11705161 1.0000 120 chr2L:12481897-12482017 1.0000 120 chr3R:23870104-23870224 1.0000 120 chrX:2178916-2179036 1.0000 120 chr2R:23714492-23714612 1.0000 120 chr3R:18411344-18411464 1.0000 120 chr2L:7106428-7106548 1.0000 120 chr3L:21206653-21206773 1.0000 120 chr2L:2579808-2579928 1.0000 120 chr3L:8124716-8124836 1.0000 120 chr3R:30014619-30014739 1.0000 120 chr3L:20834289-20834409 1.0000 120 chr3R:13722137-13722257 1.0000 120 chrX:20470808-20470928 1.0000 120 chr2L:3120932-3121052 1.0000 120 chr3L:9829778-9829898 1.0000 120 chr3R:11561787-11561907 1.0000 120 chr3R:16148851-16148971 1.0000 120 chrX:8529844-8529964 1.0000 120 chr3R:31569788-31569908 1.0000 120 chrX:636360-636480 1.0000 120 chr2R:22118057-22118177 1.0000 120 chr3L:17485043-17485163 1.0000 120 chr2R:21688797-21688917 1.0000 120 chr2L:7432169-7432289 1.0000 120 chr3R:31420468-31420588 1.0000 120 chr2R:11793219-11793339 1.0000 120 chr2R:16682140-16682260 1.0000 120 chr3L:17415137-17415257 1.0000 120 chr2L:14219548-14219668 1.0000 120 chr2L:6510997-6511117 1.0000 120 chr2R:17412317-17412437 1.0000 120 chrX:5414558-5414678 1.0000 120 chr3R:5310417-5310537 1.0000 120 chr2R:17203951-17204071 1.0000 120 chr2L:9151250-9151370 1.0000 120 chr3R:16128100-16128220 1.0000 120 chr3L:16570204-16570324 1.0000 120 chr2L:42306-42426 1.0000 120 chr2L:5101063-5101183 1.0000 120 chr2L:43173-43293 1.0000 120 chr3L:22272242-22272362 1.0000 120 chrX:6980903-6981023 1.0000 120 chr2L:8324833-8324953 1.0000 120 chr2R:12963107-12963227 1.0000 120 chr3L:15888350-15888470 1.0000 120 chr2R:2144718-2144838 1.0000 120 chr2R:23937166-23937286 1.0000 120 chr3L:3258667-3258787 1.0000 120 chr2R:18296876-18296996 1.0000 120 chr2L:16739242-16739362 1.0000 120 chr3L:16031684-16031804 1.0000 120 chr2L:14214394-14214514 1.0000 120 chr2L:2401244-2401364 1.0000 120 chr2L:6257222-6257342 1.0000 120 chr3R:7211686-7211806 1.0000 120 chrX:247455-247575 1.0000 120 chr2L:4377120-4377240 1.0000 120 chr3R:30059147-30059267 1.0000 120 chr2R:14234838-14234958 1.0000 120 chr3L:12677950-12678070 1.0000 120 chr3R:11938858-11938978 1.0000 120 chr2R:18801848-18801968 1.0000 120 chr2R:7768763-7768883 1.0000 120 chr3R:9139874-9139994 1.0000 120 chr3R:28883356-28883476 1.0000 120 chr3R:27602614-27602734 1.0000 120 chr2R:5681359-5681479 1.0000 120 chr3L:9857695-9857815 1.0000 120 chr3L:10672134-10672254 1.0000 120 chr2R:16079460-16079580 1.0000 120 chr3R:10182257-10182377 1.0000 120 chr2R:6789945-6790065 1.0000 120 chr3R:8130250-8130370 1.0000 120 chr3L:8696098-8696218 1.0000 120 chr3L:2503276-2503396 1.0000 120 chr3L:7885523-7885643 1.0000 120 chrX:5761016-5761136 1.0000 120 chr2L:10300503-10300623 1.0000 120 chr3L:7842676-7842796 1.0000 120 chr2R:24973387-24973507 1.0000 120 chr3R:18156338-18156458 1.0000 120 chr3L:8583773-8583893 1.0000 120 chr3L:7807846-7807966 1.0000 120 chr3L:11629903-11630023 1.0000 120 chr2L:206488-206608 1.0000 120 chr3R:6397200-6397320 1.0000 120 chr2L:6302272-6302392 1.0000 120 chrX:3406655-3406775 1.0000 120 chr2L:4594615-4594735 1.0000 120 chrX:16089128-16089248 1.0000 120 chr2R:24542013-24542133 1.0000 120 chr2R:10732008-10732128 1.0000 120 chr3L:7818279-7818399 1.0000 120 chr2L:4569555-4569675 1.0000 120 chr3L:2782467-2782587 1.0000 120 chr3L:7838340-7838460 1.0000 120 chr3R:7516934-7517054 1.0000 120 chr3L:19102451-19102571 1.0000 120 chr3R:13686108-13686228 1.0000 120 chr3R:31743055-31743175 1.0000 120 chr2L:4905042-4905162 1.0000 120 chr3L:11233079-11233199 1.0000 120 chrX:7155345-7155465 1.0000 120 chr2L:10771595-10771715 1.0000 120 chr2L:1912180-1912300 1.0000 120 chr2L:1718643-1718763 1.0000 120 chrX:6790208-6790328 1.0000 120 chr2R:4815600-4815720 1.0000 120 chrX:17667689-17667809 1.0000 120 chrX:6354319-6354439 1.0000 120 chr2R:9859115-9859235 1.0000 120 chr2R:22065608-22065728 1.0000 120 chr3L:18838724-18838844 1.0000 120 chr2L:6567267-6567387 1.0000 120 chr2R:19477173-19477293 1.0000 120 chr3R:30175331-30175451 1.0000 120 chr2L:5537186-5537306 1.0000 120 chr3L:4119264-4119384 1.0000 120 chr2L:6911847-6911967 1.0000 120 chr3L:16283935-16284055 1.0000 120 chr2L:54911-55031 1.0000 120 chrX:12123106-12123226 1.0000 120 chr3L:21766991-21767111 1.0000 120 chr3L:2460799-2460919 1.0000 120 chr2L:16321991-16322111 1.0000 120 chr2R:21193934-21194054 1.0000 120 chr2R:16334251-16334371 1.0000 120 chrX:8115407-8115527 1.0000 120 chr2R:24736001-24736121 1.0000 120 chr2L:16303702-16303822 1.0000 120 chr4:739939-740059 1.0000 120 chr3R:24600916-24601036 1.0000 120 chr3L:18227095-18227215 1.0000 120 chr3R:4454530-4454650 1.0000 120 chr2R:12238539-12238659 1.0000 120 chr2R:17585672-17585792 1.0000 120 chr3L:1238270-1238390 1.0000 120 chr2L:1979335-1979455 1.0000 120 chr2R:22338483-22338603 1.0000 120 chr3L:20386507-20386627 1.0000 120 chr3L:1495890-1496010 1.0000 120 chrX:18155081-18155201 1.0000 120 chr3L:22183707-22183827 1.0000 120 chr3L:9697595-9697715 1.0000 120 chr4:92140-92260 1.0000 120 chr2R:16849167-16849287 1.0000 120 chr3R:9633273-9633393 1.0000 120 chr3R:10762059-10762179 1.0000 120 chr2R:7495400-7495520 1.0000 120 chr3L:5578734-5578854 1.0000 120 chr3R:25538443-25538563 1.0000 120 chr3L:14396347-14396467 1.0000 120 chr3L:10540409-10540529 1.0000 120 chr2R:15988605-15988725 1.0000 120 chr2R:24538482-24538602 1.0000 120 chr3L:13483706-13483826 1.0000 120 chr2L:7070319-7070439 1.0000 120 chr3R:12992341-12992461 1.0000 120 chr4:1191805-1191925 1.0000 120 chr2R:11277619-11277739 1.0000 120 chrX:1876624-1876744 1.0000 120 chr3R:13772443-13772563 1.0000 120 chr2R:10460381-10460501 1.0000 120 chr3R:11820282-11820402 1.0000 120 chr2L:15345846-15345966 1.0000 120 chr2L:19567462-19567582 1.0000 120 chr2R:10845906-10846026 1.0000 120 chr2L:2441796-2441916 1.0000 120 chr3R:28901903-28902023 1.0000 120 chr3R:11853623-11853743 1.0000 120 chr2L:13085359-13085479 1.0000 120 chr2R:17624528-17624648 1.0000 120 chr3R:10706015-10706135 1.0000 120 chrX:12906466-12906586 1.0000 120 chr2L:9189030-9189150 1.0000 120 chr2L:485266-485386 1.0000 120 chrX:9879378-9879498 1.0000 120 chr2R:21217614-21217734 1.0000 120 chr2R:19987505-19987625 1.0000 120 chr2R:6025846-6025966 1.0000 120 chrX:7285056-7285176 1.0000 120 chr3L:7879106-7879226 1.0000 120 chr2L:448864-448984 1.0000 120 chr2L:8257982-8258102 1.0000 120 chr3R:21760032-21760152 1.0000 120 chr2L:7158147-7158267 1.0000 120 chr3R:16606049-16606169 1.0000 120 chr2L:7521807-7521927 1.0000 120 chr3L:20508989-20509109 1.0000 120 chr3R:23765696-23765816 1.0000 120 chr3R:31343896-31344016 1.0000 120 chrX:11425529-11425649 1.0000 120 chr2R:19180078-19180198 1.0000 120 chr3L:21568440-21568560 1.0000 120 chr2L:9335532-9335652 1.0000 120 chr2R:7986681-7986801 1.0000 120 chr2R:16691912-16692032 1.0000 120 chr2R:12596767-12596887 1.0000 120 chr4:989197-989317 1.0000 120 chr3L:16139852-16139972 1.0000 120 chr2R:10282499-10282619 1.0000 120 chr3R:9455133-9455253 1.0000 120 chr3L:17806765-17806885 1.0000 120 chr3R:4470825-4470945 1.0000 120 chrX:8520674-8520794 1.0000 120 chr3L:14005766-14005886 1.0000 120 chr3R:31951293-31951413 1.0000 120 chr2L:7820527-7820647 1.0000 120 chr2L:9152552-9152672 1.0000 120 chrX:21372761-21372881 1.0000 120 chr3R:15842353-15842473 1.0000 120 chr3L:20001392-20001512 1.0000 120 chr2L:7430488-7430608 1.0000 120 chr3L:20525901-20526021 1.0000 120 chr3L:1192453-1192573 1.0000 120 chr3R:4814099-4814219 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Pdp1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Pdp1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.303 C 0.201 G 0.201 T 0.295 Background letter frequencies (from file dataset with add-one prior applied): A 0.303 C 0.201 G 0.201 T 0.295 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTAYRTAA MEME-1 width = 8 sites = 250 llr = 1932 E-value = 1.4e-297 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTAYRTAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::9:6:aa pos.-specific C :::4:1:: probability G ::1:4::: matrix T aa:6:9:: bits 2.3 2.1 1.9 1.6 ** ** Relative 1.4 ** *** Entropy 1.2 *** *** (11.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTATATAA consensus CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAYRTAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:15842353-15842473 63 2.89e-05 AACTAAGAAA TTACGTAA CTAACGCGAG chr3R:10706015-10706135 47 2.89e-05 TCCATTTCGA TTACGTAA TACGCCCGGC chr3R:11853623-11853743 44 2.89e-05 TGAGATCCGG TTACGTAA TCAAGATACT chr2R:10845906-10846026 70 2.89e-05 GGTTGATGGA TTACGTAA TATTTGGGAG chr3R:11820282-11820402 44 2.89e-05 TCCCTGTTGG TTACGTAA CACCCAGGTT chr2R:11277619-11277739 70 2.89e-05 AAAAACGTGA TTACGTAA CAGTGATCCT chr2L:7070319-7070439 44 2.89e-05 ACTTAAAGCA TTACGTAA TGATAATATT chr2R:15988605-15988725 70 2.89e-05 TTCACAAAAA TTACGTAA CCGCACTGTG chr3R:9633273-9633393 60 2.89e-05 GTAATGTTTA TTACGTAA TGATATATAC chr2L:16303702-16303822 43 2.89e-05 AGTCCGAATA TTACGTAA CATTGATATA chrX:12123106-12123226 66 2.89e-05 CTTGAAACTA TTACGTAA TACGATAACA chr3L:4119264-4119384 70 2.89e-05 AGGCAAACAA TTACGTAA TCGCGTCTTC chrX:17667689-17667809 67 2.89e-05 GTATAAACTG TTACGTAA TATACATAGG chr2L:1718643-1718763 69 2.89e-05 CTGTGATCTG TTACGTAA TATCGTTGTG chr2L:10771595-10771715 43 2.89e-05 CTCAACCTTG TTACGTAA CCCGGGGATG chrX:7155345-7155465 53 2.89e-05 CCTTCCTGTG TTACGTAA TCAAATTACA chr3L:11233079-11233199 66 2.89e-05 AGCATTGAGA TTACGTAA CCAATCAGCA chr2L:4569555-4569675 67 2.89e-05 TGTGTTTTTA TTACGTAA CATTAGGCGA chr2L:4594615-4594735 69 2.89e-05 AGTTCAAGCA TTACGTAA TCGCTTAAAC chr2L:6302272-6302392 43 2.89e-05 ATACGTTACG TTACGTAA CAATTCGATT chr3R:18156338-18156458 69 2.89e-05 GCGCCAACGA TTACGTAA CAGTTGGGAA chr2L:10300503-10300623 57 2.89e-05 CTACTTTTTG TTACGTAA TCGTGCTTAA chr2L:2401244-2401364 68 2.89e-05 ACGAAATGGA TTACGTAA CTCTGGTGTG chr2R:17203951-17204071 43 2.89e-05 TGCGTATACG TTACGTAA TCTTTTTTAC chr2R:16682140-16682260 44 2.89e-05 ATTTTCGCTA TTACGTAA CAATGCGAAA chr2R:11793219-11793339 44 2.89e-05 CAGTAGAAGA TTACGTAA TAATGTCACA chr3R:31569788-31569908 49 2.89e-05 CAGTAAGTGA TTACGTAA CCAGGGCATT chr2L:7106428-7106548 52 2.89e-05 TGAAAGCTCG TTACGTAA CAAAAAGTCA chr2L:2986915-2987035 71 2.89e-05 CCATTTCTGA TTACGTAA TCGGTGAAAA chrX:15950195-15950315 47 2.89e-05 GTGCAAGTGA TTACGTAA TAGTAAATAG chr2R:19466938-19467058 27 2.89e-05 CTTAGAACTC TTACGTAA TGCATCACCT chr3R:31969579-31969699 52 2.89e-05 TGAAAATCGA TTACGTAA CGCATTATTA chr3R:10270171-10270291 68 2.89e-05 CCATATTCGG TTACGTAA CGAATTTAGG chr3R:9674335-9674455 59 2.89e-05 GGTTATGCGA TTACGTAA TCAGTCAAAG chr2R:18409723-18409843 77 2.89e-05 CGTGTTCTGA TTACGTAA CAATAAAGCT chr3R:4814099-4814219 46 1.15e-04 GGGAAGACGG TTACATAA CACGCTAAGA chr2L:7430488-7430608 56 1.15e-04 GTTTATAGTA TTATGTAA CTAGTTTATT chrX:21372761-21372881 43 1.15e-04 GTCAATAATA TTATGTAA TAACAGAAAA chr2L:7820527-7820647 44 1.15e-04 GCGACAGTTA TTATGTAA CCACTGTTAA chr3L:14005766-14005886 52 1.15e-04 AACCCAATGG TTACATAA GCATTTCGTT chr3R:9455133-9455253 73 1.15e-04 aatggttatg ttatgtaa tgCGTTGGCG chr3L:16139852-16139972 53 1.15e-04 GGAAATAATG TTACATAA CTTAAAAATG chr2R:7986681-7986801 45 1.15e-04 CAGCGGGGTG TTATGTAA CCGCTTACTC chr2R:19180078-19180198 67 1.15e-04 ACATCACACA TTATGTAA CACTATTGCC chr2L:7521807-7521927 56 1.15e-04 TGAATTATGA TTACATAA GCGGGCACCG chr3R:21760032-21760152 43 1.15e-04 GCCAGTATTG TTACATAA TCGATTCAGC chr2L:8257982-8258102 72 1.15e-04 TCGATTGTGG TTATGTAA TGCGAGACCG chr2L:448864-448984 47 1.15e-04 CACTTACATA TTACATAA CGCATAACTG chr3L:7879106-7879226 44 1.15e-04 AAAAGAATTA TTATGTAA TATTCGCATT chrX:7285056-7285176 46 1.15e-04 AGAACTAATA TTATGTAA TCGCAATAAT chr2R:17624528-17624648 47 1.15e-04 CACAAAATGA TTATGTAA CCTTAGCCTA chr2L:13085359-13085479 72 1.15e-04 TCTTTGCATG TTATGTAA TAAAAGTGAA chr3R:28901903-28902023 81 1.15e-04 AACTTAGATG TTACATAA TTACAAATAA chr2R:10460381-10460501 69 1.15e-04 TGGGTGACGG TTACATAA CCGGCGAATA chr4:1191805-1191925 44 1.15e-04 GCTAAATCTA TTACATAA TAAGTTTAAT chr3L:14396347-14396467 65 1.15e-04 AGAAAATAAG TTATGTAA CAGTAAAAAC chr3R:25538443-25538563 104 1.15e-04 TTTGTGCAGA TTATGTAA CAATATACT chr3L:5578734-5578854 35 1.15e-04 GCCTGCGGTA TTATGTAA GCTGAAGATC chr2R:7495400-7495520 73 1.15e-04 TATAAAAGTG TTACATAA TGGAAGTGAT chr3L:1495890-1496010 43 1.15e-04 ACCCCTGCTG TTACATAA CCAAGGGTCA chr3R:4454530-4454650 46 1.15e-04 TTTTTTTTTG TTATGTAA CAGCATTAGA chr4:739939-740059 67 1.15e-04 CACATGGTTG TTACATAA TACGTTTTGT chr2R:16334251-16334371 48 1.15e-04 GGCACTGTTA TTACATAA CCACCATGAT chr2L:5537186-5537306 39 1.15e-04 CTTAAATTAC TTATGTAA TTGGAATGAA chr3L:18838724-18838844 100 1.15e-04 AAATTAATTA TTATGTAA TGACAGCTGC chr2R:22065608-22065728 46 1.15e-04 TTCCATCTGG TTATGTAA TCAACGGAGT chr2R:9859115-9859235 29 1.15e-04 GAATGGGCGA TTATGTAA TAATAACATG chr2R:4815600-4815720 45 1.15e-04 ACTGTCCTGA TTACATAA CAATGACCGC chr2L:4905042-4905162 54 1.15e-04 TCAGGGCGGA TTATGTAA CCGTTTTATG chr3R:31743055-31743175 40 1.15e-04 CATTTGCATA TTACATAA TATACGTTAG chr3R:7516934-7517054 64 1.15e-04 AAAAAAAATA TTATGTAA TCAGCAAGTG chr3L:7807846-7807966 47 1.15e-04 CCTTTGGGCC TTACATAA GTTCGGTGTA chr3L:7885523-7885643 32 1.15e-04 TGGAATGGGG TTACATAA CCCAGACTCA chr3L:8696098-8696218 37 1.15e-04 AATGAAATGC TTACATAA CATAATAGGG chr3L:10672134-10672254 76 1.15e-04 GCGTAAACTA TTATGTAA TACTTCTTTT chr3L:9857695-9857815 61 1.15e-04 TGCATCATTA TTACATAA CTTGATTTCT chr2R:5681359-5681479 41 1.15e-04 ACCATTAAAG TTATGTAA TACATGTTAT chr2R:7768763-7768883 48 1.15e-04 CATAATGCGA TTACATAA CCGTTTTGAG chr2R:18801848-18801968 42 1.15e-04 ATCGCGACGC TTACATAA GACACGTGCT chr2L:6257222-6257342 44 1.15e-04 AAACATATGA TTATGTAA CATGTGCGTT chr2L:14214394-14214514 43 1.15e-04 AAGAAGTTCG TTACATAA CAATATGTAA chr3L:16031684-16031804 46 1.15e-04 TCTGTACATA TTACATAA TACCACCCAA chr3L:3258667-3258787 74 1.15e-04 AAAACAAAAC TTACATAA CGATCTGCGG chr3L:15888350-15888470 68 1.15e-04 GTCAATTATG TTACATAA TCAACAAAAC chr2R:12963107-12963227 43 1.15e-04 TTACCATTTG TTACATAA TCACAATAAA chr2L:8324833-8324953 69 1.15e-04 ATATCTTCCG TTATGTAA TCGCGTAATC chr2L:5101063-5101183 71 1.15e-04 TTTCCACGGA TTACATAA TCGGCAGTGA chr3R:16128100-16128220 61 1.15e-04 GCACTCAGTG TTATGTAA CAGTTATACT chrX:5414558-5414678 75 1.15e-04 GTGTTGTTTG TTATGTAA TGATTAAGGG chr3R:31420468-31420588 38 1.15e-04 ACGCTCATTA TTATGTAA TAGAAAACAA chr2L:7432169-7432289 48 1.15e-04 TCATATATTA TTATGTAA GAGATATGTA chrX:636360-636480 45 1.15e-04 CACTTCCACA TTATGTAA GCAGCGACGC chr3R:16148851-16148971 64 1.15e-04 TGAGTGTGCA TTATGTAA TCGTTTCTAT chr3R:11561787-11561907 110 1.15e-04 TTCAGTGCGA TTACATAA CTT chr2L:3120932-3121052 61 1.15e-04 CGGCAAAATG TTACATAA TATGATTTAA chr3R:13722137-13722257 58 1.15e-04 CGTACGACTG TTACATAA CTCACTCACT chr3R:30014619-30014739 70 1.15e-04 CACTAGAAGG TTACATAA CCGAAAGATT chr2R:23714492-23714612 67 1.15e-04 GGAGAGGGCA TTACATAA TTAGTGAGCG chr3R:23870104-23870224 53 1.15e-04 TTTCAGTTTG TTACATAA TCAGCAGAAA chr3L:11705041-11705161 69 1.15e-04 AGCCGCGGAG TTACATAA CACAGAGCAT chr3R:5458766-5458886 41 1.15e-04 CGTATATCAT TTATGTAA GACTTTTCAG chrX:2792037-2792157 47 1.15e-04 AGTTGAGATG TTATGTAA TACTAGATAC chr3L:15162144-15162264 63 1.15e-04 AGGCCGGCAA TTATGTAA TTACTCCGGC chr3L:7822314-7822434 70 1.15e-04 CTGCTTACTG TTATGTAA TAACATTATT chr2R:6008545-6008665 71 1.15e-04 AATTGGACTG TTATGTAA CATACCCGTC chr2R:9430193-9430313 66 1.15e-04 TAAGTTCTTG TTACATAA CACCCATTGA chr2R:11451184-11451304 49 1.15e-04 CCAAAAATGA TTACATAA TACGATCGAA chr3L:16147467-16147587 113 1.15e-04 GTAGGCGCAG TTACATAA chr3R:27135101-27135221 33 1.15e-04 TGCCGCCGCC TTATGTAA CGAGTGGAGT chr2R:25086037-25086157 50 1.15e-04 AACTTGCCTG TTATGTAA GGGGAACGTG chr3R:23942185-23942305 96 1.15e-04 ATATACTGGG TTACATAA CTTGAAAAAT chr3L:1192453-1192573 48 1.79e-04 TGACAACAAG TTATATAA CCAACTTCCT chr3L:20001392-20001512 70 1.79e-04 GGGAGTCGCA TTATATAA TGTGGCACGT chr2L:9152552-9152672 72 1.79e-04 GTCGTATGGG TTATATAA TCACATCAGA chr3R:31951293-31951413 92 1.79e-04 TAACCAAGGA TTATATAA CTTTATGGCC chr3L:17806765-17806885 52 1.79e-04 AAGGGAACTA TTATATAA TACACTCGGT chr4:989197-989317 44 1.79e-04 GGATACATGG TTATATAA TCAAATATTT chr2R:16691912-16692032 55 1.79e-04 CTCTTAAATA TTATATAA CCTCCAGTGG chr2L:9335532-9335652 68 1.79e-04 TCTACATATG TTATATAA GTCATAGTCT chrX:11425529-11425649 46 1.79e-04 TCTCACGGGG TTATATAA CCCCAACAAA chr3R:31343896-31344016 43 1.79e-04 CTGGATAAGG TTATATAA TTATTTCTTA chr2R:6025846-6025966 41 1.79e-04 ATAGTAGATA TTATATAA CCAATAAAAA chr2R:19987505-19987625 67 1.79e-04 ATGCTTTCTC TTATATAA CCATAAAATT chrX:9879378-9879498 68 1.79e-04 TCGCCAATTG TTATATAA TCACTAGTAG chr2L:2441796-2441916 63 1.79e-04 TATATAATGC TTATATAA GCACGCTGGA chr2L:19567462-19567582 69 1.79e-04 CCTGTAAAAG TTATATAA CCACCCTTTT chr2L:15345846-15345966 70 1.79e-04 TTGATGTGTG TTATATAA CCACGATTTT chr3R:13772443-13772563 22 1.79e-04 CCTCCCCGCG TTATATAA GGCAAAAGGG chrX:1876624-1876744 71 1.79e-04 CCAGCAGGTA TTATATAA TTTCCATAAC chr3R:12992341-12992461 66 1.79e-04 TATCTGATGG TTATATAA TATTATTTTA chr3L:13483706-13483826 78 1.79e-04 GGATTATACG TTATATAA TAATATGTAT chr2R:24538482-24538602 43 1.79e-04 CGCGCCAGCA TTATATAA CCATCATAAC chr3R:10762059-10762179 96 1.79e-04 TTAACTAAAA TTATATAA ATGGGTTTTC chr4:92140-92260 70 1.79e-04 GGTAAAACGA TTATATAA TCAATGGAGC chr3L:9697595-9697715 46 1.79e-04 AGAACTTCGA TTATATAA TAAGGCCATG chr3L:22183707-22183827 42 1.79e-04 ATTGTAGCAA TTATATAA CATTTTTTCT chrX:18155081-18155201 48 1.79e-04 TATGTGTGCG TTATATAA GTCAGTTATG chr2R:22338483-22338603 70 1.79e-04 TAACAGAATG TTATATAA TCTCGGGGTG chr2L:1979335-1979455 45 1.79e-04 TTTGTGCTCG TTATATAA TCCAATTCAA chr3L:1238270-1238390 69 1.79e-04 CACACACTAC TTATATAA CCGCACCCGA chr2R:17585672-17585792 73 1.79e-04 TTGCCCCCGA TTATATAA CGTGGGATTA chr2R:12238539-12238659 69 1.79e-04 CTGGACCGCG TTATATAA TCATTTGGTT chr3R:24600916-24601036 76 1.79e-04 ATATGGTTTA TTATATAA CAAATGGCGC chr2R:24736001-24736121 86 1.79e-04 CGTTTTTGCA TTATATAA CATTTCTCTG chr3L:21766991-21767111 46 1.79e-04 ACTTAATTGA TTATATAA TAACTGAACC chr3L:16283935-16284055 68 1.79e-04 CGGCCCATGA TTATATAA CATGGGGCCA chr2L:6567267-6567387 43 1.79e-04 TAAATTTGTG TTATATAA TGACAATGAC chr2L:1912180-1912300 44 1.79e-04 CAAGATGACG TTATATAA TCTGTAAAAG chr3L:19102451-19102571 39 1.79e-04 TCTTATCTGG TTATATAA CACCAGTAGC chr3L:7818279-7818399 75 1.79e-04 TATTTCTCTA TTATATAA ACCATTCGAA chr2R:10732008-10732128 48 1.79e-04 CCGTCTATCG TTATATAA CTTATTGGTT chr2R:24542013-24542133 42 1.79e-04 TCCACTTCTG TTATATAA GACCATAAAC chr3R:6397200-6397320 72 1.79e-04 TTCGGCTCGA TTATATAA GAGCTGCGAA chr2L:206488-206608 84 1.79e-04 CTAACATTAA TTATATAA CTCGAACTTA chr3L:11629903-11630023 69 1.79e-04 ATTAATAAAG TTATATAA TCAAAGAACA chrX:5761016-5761136 68 1.79e-04 TGAGTAATGG TTATATAA TAGAAGTGAA chr3L:2503276-2503396 47 1.79e-04 TACACTGCAA TTATATAA TCGCCTCGGA chr3R:8130250-8130370 70 1.79e-04 CTTGTGCTGA TTATATAA TGACAAATAA chr2R:6789945-6790065 46 1.79e-04 CCGGCTGTAA TTATATAA TCATTTTAAT chr3R:10182257-10182377 67 1.79e-04 CTTTGCCTGA TTATATAA TGCAAACGGC chr2R:16079460-16079580 70 1.79e-04 CTGAATCTAG TTATATAA TCAAATTGTG chr3R:27602614-27602734 72 1.79e-04 AAAGAGTTTG TTATATAA CACAAACAAT chr3R:28883356-28883476 43 1.79e-04 TTCGCTAGTG TTATATAA CCAAAGCATA chr3R:9139874-9139994 69 1.79e-04 AAAACAAAAG TTATATAA CTTTTATGGC chr3R:11938858-11938978 40 1.79e-04 CATATATCAG TTATATAA TCACGTTTAT chr2R:14234838-14234958 30 1.79e-04 TCTATACAAG TTATATAA CTTGCGAAAC chr2L:4377120-4377240 43 1.79e-04 TATCGCCTAA TTATATAA TCATCCGCCG chr3R:7211686-7211806 46 1.79e-04 GGGTCAGAAG TTATATAA TAGTTTCGAT chr2L:16739242-16739362 73 1.79e-04 ATCGAAGGAG TTATATAA CACGAAACGA chr2R:18296876-18296996 44 1.79e-04 CTGTAAATAG TTATATAA TCATATACAT chr2R:2144718-2144838 46 1.79e-04 cacaaatgca ttatataa tacaatcaaa chr3L:16570204-16570324 41 1.79e-04 AAAAACAATA TTATATAA CCTAAATATC chr2L:9151250-9151370 73 1.79e-04 CAATAACGAG TTATATAA CAACTGTTGA chr3R:5310417-5310537 42 1.79e-04 TTCGAGTATA TTATATAA CCGTTCTGCA chr2R:17412317-17412437 71 1.79e-04 GTTGTTTGAC TTATATAA CCATTTAAAG chr2L:6510997-6511117 47 1.79e-04 ACCGCACTCA TTATATAA GCCTTCCACA chr2L:14219548-14219668 43 1.79e-04 ATGTTCGCTA TTATATAA CGGGTTTTAC chr3L:17415137-17415257 42 1.79e-04 ACCAAATCGA TTATATAA CATGACTAAA chr2R:21688797-21688917 52 1.79e-04 CCGAGAATCG TTATATAA CATGCACTCA chrX:8529844-8529964 50 1.79e-04 TTTTAAATTG TTATATAA TCATTTCAAA chr3L:9829778-9829898 31 1.79e-04 CACCTCGTTA TTATATAA CGCTCTTCTC chr2L:2579808-2579928 31 1.79e-04 TGGAGCAATC TTATATAA GATCGAGACT chr3L:21206653-21206773 45 1.79e-04 cagataccta ttatataa tatggttagt chr3R:18411344-18411464 43 1.79e-04 CGCACATGGA TTATATAA CCGATTCCAC chrX:2178916-2179036 44 1.79e-04 AAGGTTTTGC TTATATAA AGTTTAGCTA chr2L:12481897-12482017 72 1.79e-04 CATTTTCAGA TTATATAA CACAAAGTGT chr3R:9141053-9141173 73 1.79e-04 TAGCACACGA TTATATAA CACAATCAGC chr2L:204696-204816 65 1.79e-04 AAATCAAAAA TTATATAA TTGTTTTTCA chrX:8569778-8569898 73 1.79e-04 GCCGTTATTG TTATATAA CACACATGCA chr2L:10386963-10387083 76 1.79e-04 AAATGATCAA TTATATAA CGAAAAAGGG chr3R:28875451-28875571 40 1.79e-04 TGAGCACGAA TTATATAA GAGTGCAGTT chr3L:21283934-21284054 57 1.79e-04 AATGAAATCG TTATATAA CCCATCATAT chr3R:13686108-13686228 40 1.98e-04 TCGCAGCTGA TTGCGTAA ACGAAACCGC chrX:3406655-3406775 69 1.98e-04 TTATCGCCTA TTGCGTAA GCGTTTTTCT chr2R:24973387-24973507 59 1.98e-04 AAATCGTATA TTGCGTAA CGGCGGACTA chr2R:23937166-23937286 81 1.98e-04 TAATTTCAAA TTGCGTAA TAACAAAGAG chr3R:6107492-6107612 46 1.98e-04 TCTGTGACAG TTGCGTAA TCTTCGCGGA chrX:7340097-7340217 70 1.98e-04 AGCATAATGA TTGCGTAA CATTATTAAT chr2R:12596767-12596887 44 2.55e-04 CACCTTTTGA TTGCATAA CAATTGGAAT chr3L:21568440-21568560 58 2.55e-04 GTGTTTCTAG TTGCATAA CCTGCCTGCT chr3R:16606049-16606169 70 2.55e-04 TTCCGCAGGA TTGCATAA TCAGTTATTT chr2L:9189030-9189150 65 2.55e-04 AGTGTGTATG TTGCATAA CCCGCGTATT chr2R:16849167-16849287 70 2.55e-04 GCGTTATTTA TTGCATAA TTATAGGAAA chr3L:20386507-20386627 71 2.55e-04 AATATTCAAG TTGCATAA CGATAAGAAA chrX:8115407-8115527 74 2.55e-04 TTTTGGTGGG TTGTGTAA CGTTATTTGC chr3R:30175331-30175451 76 2.55e-04 TCCATGGACA TTGCATAA CAATGGGAAG chrX:6354319-6354439 89 2.55e-04 GATCAAGCGA TTGCATAA GAGCAAATGC chrX:6790208-6790328 19 2.55e-04 CGGCATAATG TTGCATAA TGAcagcagc chrX:16089128-16089248 74 2.55e-04 TTTCAATACA TTGCATAA CCAGCTTTAG chr3R:30059147-30059267 67 2.55e-04 TGTTTGCCCA TTGCATAA GCGCCTGCTT chr2L:43173-43293 78 2.55e-04 ACAGAGAATG TTGCATAA CCATCAAATA chrX:7702299-7702419 61 2.55e-04 TGAATGCTCG TTGCATAA TCGCCGTGCT chrX:12906466-12906586 76 2.97e-04 TGCAATAAAA TTGTATAA GCTAAGCAAT chr3L:7842676-7842796 47 2.97e-04 TCTCCTGGTA TTGTATAA TGTCCATATC chrX:20470808-20470928 37 2.97e-04 CTGTAATGTG TTGTATAA GTTTTACAAA chr3R:23765696-23765816 105 3.17e-04 TACGAAATGA TTACGCAA TGTCTGTT chr2L:485266-485386 72 3.17e-04 ATCCACCGAA TTACGCAA CCAGGTGTGT chr3L:8583773-8583893 39 3.17e-04 GATTTGCATG TTACGCAA TTCGACGGTA chr2L:10751352-10751472 40 3.17e-04 AATTCATTGT TTACGCAA TGTTTTTCTC chr2R:23382760-23382880 54 3.17e-04 TTTTGTGCGG TTACGCAA CAGTGGAGTG chr3L:18227095-18227215 37 3.75e-04 CACAGCCTGC TTATGCAA GCACACAGAT chr2L:16321991-16322111 62 3.75e-04 TCCACACATG TTATGCAA TGAGTGTGGG chr2L:54911-55031 35 3.75e-04 ATGAGTGCGA TTATGCAA TCACAGGGCA chr3L:22272242-22272362 53 3.75e-04 TTATCGTTTC TTATGCAA CGCGTACATT chr2L:42306-42426 63 3.75e-04 TTATGGACTG TTATGCAA CTAGCCAATG chr2L:4995149-4995269 58 3.75e-04 CTGGCGGCAA TTATGCAA TCTATGAGAT chr3R:4470825-4470945 56 4.19e-04 TTCGGGGCGA TTATACAA TGCGGTTGGC chr2L:6911847-6911967 76 4.19e-04 GTTTAAGTTG TTATACAA CTATTTATCT chrX:6980903-6981023 63 4.19e-04 CGTATTATAG TTATACAA CTAATCCCAC chr3L:17485043-17485163 53 4.19e-04 CGTTCAGATC TTATACAA TAGTTTTCCC chr3R:26897450-26897570 92 4.38e-04 AATCCGAAAT TGACGTAA TGCGTTTTTG chr3L:8124716-8124836 40 4.97e-04 GTGGGGCAGA TGACATAA CCGCGCTCCT chr2L:18858800-18858920 56 4.97e-04 AACACGCCGG TGATGTAA TGACATCGAA chr2R:21217614-21217734 54 5.40e-04 ATAGGGTTGC TGATATAA AGAGTCAATT chr3L:20525901-20526021 40 5.53e-04 GGACTGAAGG TTGCGCAA CATTCGATTC chr2R:10282499-10282619 28 5.53e-04 GATGCGCGAG TTGCGCAA GAGCCTCTCG chr3L:2460799-2460919 40 5.53e-04 GGCTTGCGTG TTGCGCAA CATTTGTGAC chr2R:22118057-22118177 103 5.53e-04 CCGCACGAGA TTGCGCAA GTCTTATAAG chr2R:21193934-21194054 61 5.92e-04 TACGACTAGA TTGCACAA CAGCTGTGTA chr3L:20508989-20509109 64 7.75e-04 CGCAGTAATA TTATGTCA CTAAAACTGG chr3L:12677950-12678070 70 8.61e-04 TCGTATATGG GTATATAA CCGTATGTGC chr3L:10540409-10540529 8 1.02e-03 ACGCTGA CTACGTAA GCGGAAGTTG chr2R:19477173-19477293 60 1.02e-03 AATTGGCCAA TGACGCAA CATGGGTAAC chrX:247455-247575 78 1.02e-03 AACTCGCTGC TGACGCAA CCAACCAAAT chr3L:7838340-7838460 51 1.18e-03 TTGTCAGAAG TGATGCAA CCGGGTTTTC chr3L:7810565-7810685 21 1.40e-03 TTAACGCAAA TTACGTAT ACGACGCGTT chr3L:2782467-2782587 4 1.55e-03 AAA TTATAAAA TCCGGAATTA chrX:8520674-8520794 67 1.63e-03 CTGATGGCGA TTGCGTCA TTTTCATTCG chr3L:20834289-20834409 8 1.71e-03 TATATAA GTGTGTAA AATTAATTGT chr2L:7158147-7158267 107 2.09e-03 TCTTCTGAAG TTGTTTAA TTCTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAYRTAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:15842353-15842473 2.9e-05 62_[+1]_50 chr3R:10706015-10706135 2.9e-05 46_[+1]_66 chr3R:11853623-11853743 2.9e-05 43_[+1]_69 chr2R:10845906-10846026 2.9e-05 69_[+1]_43 chr3R:11820282-11820402 2.9e-05 43_[+1]_69 chr2R:11277619-11277739 2.9e-05 69_[+1]_43 chr2L:7070319-7070439 2.9e-05 43_[+1]_69 chr2R:15988605-15988725 2.9e-05 69_[+1]_43 chr3R:9633273-9633393 2.9e-05 59_[+1]_53 chr2L:16303702-16303822 2.9e-05 42_[+1]_70 chrX:12123106-12123226 2.9e-05 65_[+1]_47 chr3L:4119264-4119384 2.9e-05 69_[+1]_43 chrX:17667689-17667809 2.9e-05 66_[+1]_46 chr2L:1718643-1718763 2.9e-05 68_[+1]_44 chr2L:10771595-10771715 2.9e-05 42_[+1]_70 chrX:7155345-7155465 2.9e-05 52_[+1]_60 chr3L:11233079-11233199 2.9e-05 65_[+1]_47 chr2L:4569555-4569675 2.9e-05 66_[+1]_46 chr2L:4594615-4594735 2.9e-05 68_[+1]_44 chr2L:6302272-6302392 2.9e-05 42_[+1]_70 chr3R:18156338-18156458 2.9e-05 68_[+1]_44 chr2L:10300503-10300623 2.9e-05 56_[+1]_56 chr2L:2401244-2401364 2.9e-05 67_[+1]_45 chr2R:17203951-17204071 2.9e-05 42_[+1]_70 chr2R:16682140-16682260 2.9e-05 43_[+1]_69 chr2R:11793219-11793339 2.9e-05 43_[+1]_69 chr3R:31569788-31569908 2.9e-05 48_[+1]_64 chr2L:7106428-7106548 2.9e-05 51_[+1]_61 chr2L:2986915-2987035 2.9e-05 70_[+1]_42 chrX:15950195-15950315 2.9e-05 46_[+1]_66 chr2R:19466938-19467058 2.9e-05 26_[+1]_86 chr3R:31969579-31969699 2.9e-05 51_[+1]_61 chr3R:10270171-10270291 2.9e-05 67_[+1]_45 chr3R:9674335-9674455 2.9e-05 58_[+1]_54 chr2R:18409723-18409843 2.9e-05 76_[+1]_36 chr3R:4814099-4814219 0.00011 45_[+1]_67 chr2L:7430488-7430608 0.00011 55_[+1]_57 chrX:21372761-21372881 0.00011 42_[+1]_70 chr2L:7820527-7820647 0.00011 43_[+1]_69 chr3L:14005766-14005886 0.00011 51_[+1]_61 chr3R:9455133-9455253 0.00011 72_[+1]_40 chr3L:16139852-16139972 0.00011 52_[+1]_60 chr2R:7986681-7986801 0.00011 44_[+1]_68 chr2R:19180078-19180198 0.00011 66_[+1]_46 chr2L:7521807-7521927 0.00011 55_[+1]_57 chr3R:21760032-21760152 0.00011 42_[+1]_70 chr2L:8257982-8258102 0.00011 71_[+1]_41 chr2L:448864-448984 0.00011 46_[+1]_66 chr3L:7879106-7879226 0.00011 43_[+1]_69 chrX:7285056-7285176 0.00011 45_[+1]_67 chr2R:17624528-17624648 0.00011 46_[+1]_66 chr2L:13085359-13085479 0.00011 71_[+1]_41 chr3R:28901903-28902023 0.00011 80_[+1]_32 chr2R:10460381-10460501 0.00011 68_[+1]_44 chr4:1191805-1191925 0.00011 43_[+1]_69 chr3L:14396347-14396467 0.00011 64_[+1]_48 chr3R:25538443-25538563 0.00011 103_[+1]_9 chr3L:5578734-5578854 0.00011 34_[+1]_78 chr2R:7495400-7495520 0.00011 72_[+1]_40 chr3L:1495890-1496010 0.00011 42_[+1]_70 chr3R:4454530-4454650 0.00011 45_[+1]_67 chr4:739939-740059 0.00011 66_[+1]_46 chr2R:16334251-16334371 0.00011 47_[+1]_65 chr2L:5537186-5537306 0.00011 38_[+1]_74 chr3L:18838724-18838844 0.00011 99_[+1]_13 chr2R:22065608-22065728 0.00011 45_[+1]_67 chr2R:9859115-9859235 0.00011 28_[+1]_84 chr2R:4815600-4815720 0.00011 44_[+1]_68 chr2L:4905042-4905162 0.00011 53_[+1]_59 chr3R:31743055-31743175 0.00011 39_[+1]_73 chr3R:7516934-7517054 0.00011 63_[+1]_49 chr3L:7807846-7807966 0.00011 46_[+1]_66 chr3L:7885523-7885643 0.00011 31_[+1]_81 chr3L:8696098-8696218 0.00011 36_[+1]_76 chr3L:10672134-10672254 0.00011 75_[+1]_37 chr3L:9857695-9857815 0.00011 60_[+1]_52 chr2R:5681359-5681479 0.00011 40_[+1]_72 chr2R:7768763-7768883 0.00011 47_[+1]_65 chr2R:18801848-18801968 0.00011 41_[+1]_71 chr2L:6257222-6257342 0.00011 43_[+1]_69 chr2L:14214394-14214514 0.00011 42_[+1]_70 chr3L:16031684-16031804 0.00011 45_[+1]_67 chr3L:3258667-3258787 0.00011 73_[+1]_39 chr3L:15888350-15888470 0.00011 67_[+1]_45 chr2R:12963107-12963227 0.00011 42_[+1]_70 chr2L:8324833-8324953 0.00011 68_[+1]_44 chr2L:5101063-5101183 0.00011 70_[+1]_42 chr3R:16128100-16128220 0.00011 60_[+1]_52 chrX:5414558-5414678 0.00011 74_[+1]_38 chr3R:31420468-31420588 0.00011 37_[+1]_75 chr2L:7432169-7432289 0.00011 47_[+1]_65 chrX:636360-636480 0.00011 44_[+1]_68 chr3R:16148851-16148971 0.00011 63_[+1]_49 chr3R:11561787-11561907 0.00011 109_[+1]_3 chr2L:3120932-3121052 0.00011 60_[+1]_52 chr3R:13722137-13722257 0.00011 57_[+1]_55 chr3R:30014619-30014739 0.00011 69_[+1]_43 chr2R:23714492-23714612 0.00011 66_[+1]_46 chr3R:23870104-23870224 0.00011 52_[+1]_60 chr3L:11705041-11705161 0.00011 68_[+1]_44 chr3R:5458766-5458886 0.00011 40_[+1]_72 chrX:2792037-2792157 0.00011 46_[+1]_66 chr3L:15162144-15162264 0.00011 62_[+1]_50 chr3L:7822314-7822434 0.00011 69_[+1]_43 chr2R:6008545-6008665 0.00011 70_[+1]_42 chr2R:9430193-9430313 0.00011 65_[+1]_47 chr2R:11451184-11451304 0.00011 48_[+1]_64 chr3L:16147467-16147587 0.00011 112_[+1] chr3R:27135101-27135221 0.00011 32_[+1]_80 chr2R:25086037-25086157 0.00011 49_[+1]_63 chr3R:23942185-23942305 0.00011 95_[+1]_17 chr3L:1192453-1192573 0.00018 47_[+1]_65 chr3L:20001392-20001512 0.00018 69_[+1]_43 chr2L:9152552-9152672 0.00018 71_[+1]_41 chr3R:31951293-31951413 0.00018 91_[+1]_21 chr3L:17806765-17806885 0.00018 51_[+1]_61 chr4:989197-989317 0.00018 43_[+1]_69 chr2R:16691912-16692032 0.00018 54_[+1]_58 chr2L:9335532-9335652 0.00018 67_[+1]_45 chrX:11425529-11425649 0.00018 45_[+1]_67 chr3R:31343896-31344016 0.00018 42_[+1]_70 chr2R:6025846-6025966 0.00018 40_[+1]_72 chr2R:19987505-19987625 0.00018 66_[+1]_46 chrX:9879378-9879498 0.00018 67_[+1]_45 chr2L:2441796-2441916 0.00018 62_[+1]_50 chr2L:19567462-19567582 0.00018 68_[+1]_44 chr2L:15345846-15345966 0.00018 69_[+1]_43 chr3R:13772443-13772563 0.00018 21_[+1]_91 chrX:1876624-1876744 0.00018 70_[+1]_42 chr3R:12992341-12992461 0.00018 65_[+1]_47 chr3L:13483706-13483826 0.00018 77_[+1]_35 chr2R:24538482-24538602 0.00018 42_[+1]_70 chr3R:10762059-10762179 0.00018 95_[+1]_17 chr4:92140-92260 0.00018 69_[+1]_43 chr3L:9697595-9697715 0.00018 45_[+1]_67 chr3L:22183707-22183827 0.00018 41_[+1]_71 chrX:18155081-18155201 0.00018 47_[+1]_65 chr2R:22338483-22338603 0.00018 69_[+1]_43 chr2L:1979335-1979455 0.00018 44_[+1]_68 chr3L:1238270-1238390 0.00018 68_[+1]_44 chr2R:17585672-17585792 0.00018 72_[+1]_40 chr2R:12238539-12238659 0.00018 68_[+1]_44 chr3R:24600916-24601036 0.00018 75_[+1]_37 chr2R:24736001-24736121 0.00018 85_[+1]_27 chr3L:21766991-21767111 0.00018 45_[+1]_67 chr3L:16283935-16284055 0.00018 67_[+1]_45 chr2L:6567267-6567387 0.00018 42_[+1]_70 chr2L:1912180-1912300 0.00018 43_[+1]_69 chr3L:19102451-19102571 0.00018 38_[+1]_74 chr3L:7818279-7818399 0.00018 74_[+1]_38 chr2R:10732008-10732128 0.00018 47_[+1]_65 chr2R:24542013-24542133 0.00018 41_[+1]_71 chr3R:6397200-6397320 0.00018 71_[+1]_41 chr2L:206488-206608 0.00018 83_[+1]_29 chr3L:11629903-11630023 0.00018 68_[+1]_44 chrX:5761016-5761136 0.00018 67_[+1]_45 chr3L:2503276-2503396 0.00018 46_[+1]_66 chr3R:8130250-8130370 0.00018 69_[+1]_43 chr2R:6789945-6790065 0.00018 45_[+1]_67 chr3R:10182257-10182377 0.00018 66_[+1]_46 chr2R:16079460-16079580 0.00018 69_[+1]_43 chr3R:27602614-27602734 0.00018 71_[+1]_41 chr3R:28883356-28883476 0.00018 42_[+1]_70 chr3R:9139874-9139994 0.00018 68_[+1]_44 chr3R:11938858-11938978 0.00018 39_[+1]_73 chr2R:14234838-14234958 0.00018 29_[+1]_83 chr2L:4377120-4377240 0.00018 42_[+1]_70 chr3R:7211686-7211806 0.00018 45_[+1]_67 chr2L:16739242-16739362 0.00018 72_[+1]_40 chr2R:18296876-18296996 0.00018 43_[+1]_69 chr2R:2144718-2144838 0.00018 45_[+1]_67 chr3L:16570204-16570324 0.00018 40_[+1]_72 chr2L:9151250-9151370 0.00018 72_[+1]_40 chr3R:5310417-5310537 0.00018 41_[+1]_71 chr2R:17412317-17412437 0.00018 70_[+1]_42 chr2L:6510997-6511117 0.00018 46_[+1]_66 chr2L:14219548-14219668 0.00018 42_[+1]_70 chr3L:17415137-17415257 0.00018 41_[+1]_71 chr2R:21688797-21688917 0.00018 51_[+1]_61 chrX:8529844-8529964 0.00018 49_[+1]_63 chr3L:9829778-9829898 0.00018 30_[+1]_82 chr2L:2579808-2579928 0.00018 30_[+1]_82 chr3L:21206653-21206773 0.00018 44_[+1]_68 chr3R:18411344-18411464 0.00018 42_[+1]_70 chrX:2178916-2179036 0.00018 43_[+1]_69 chr2L:12481897-12482017 0.00018 71_[+1]_41 chr3R:9141053-9141173 0.00018 72_[+1]_40 chr2L:204696-204816 0.00018 64_[+1]_48 chrX:8569778-8569898 0.00018 72_[+1]_40 chr2L:10386963-10387083 0.00018 75_[+1]_37 chr3R:28875451-28875571 0.00018 39_[+1]_73 chr3L:21283934-21284054 0.00018 56_[+1]_56 chr3R:13686108-13686228 0.0002 39_[+1]_73 chrX:3406655-3406775 0.0002 68_[+1]_44 chr2R:24973387-24973507 0.0002 58_[+1]_54 chr2R:23937166-23937286 0.0002 80_[+1]_32 chr3R:6107492-6107612 0.0002 45_[+1]_67 chrX:7340097-7340217 0.0002 69_[+1]_43 chr2R:12596767-12596887 0.00025 43_[+1]_69 chr3L:21568440-21568560 0.00025 57_[+1]_55 chr3R:16606049-16606169 0.00025 69_[+1]_43 chr2L:9189030-9189150 0.00025 64_[+1]_48 chr2R:16849167-16849287 0.00025 69_[+1]_43 chr3L:20386507-20386627 0.00025 70_[+1]_42 chrX:8115407-8115527 0.00025 73_[+1]_39 chr3R:30175331-30175451 0.00025 75_[+1]_37 chrX:6354319-6354439 0.00025 88_[+1]_24 chrX:6790208-6790328 0.00025 18_[+1]_94 chrX:16089128-16089248 0.00025 73_[+1]_39 chr3R:30059147-30059267 0.00025 66_[+1]_46 chr2L:43173-43293 0.00025 77_[+1]_35 chrX:7702299-7702419 0.00025 60_[+1]_52 chrX:12906466-12906586 0.0003 75_[+1]_37 chr3L:7842676-7842796 0.0003 46_[+1]_66 chrX:20470808-20470928 0.0003 36_[+1]_76 chr3R:23765696-23765816 0.00032 104_[+1]_8 chr2L:485266-485386 0.00032 71_[+1]_41 chr3L:8583773-8583893 0.00032 38_[+1]_74 chr2L:10751352-10751472 0.00032 39_[+1]_73 chr2R:23382760-23382880 0.00032 53_[+1]_59 chr3L:18227095-18227215 0.00038 36_[+1]_76 chr2L:16321991-16322111 0.00038 61_[+1]_51 chr2L:54911-55031 0.00038 34_[+1]_78 chr3L:22272242-22272362 0.00038 52_[+1]_60 chr2L:42306-42426 0.00038 62_[+1]_50 chr2L:4995149-4995269 0.00038 57_[+1]_55 chr3R:4470825-4470945 0.00042 55_[+1]_57 chr2L:6911847-6911967 0.00042 75_[+1]_37 chrX:6980903-6981023 0.00042 62_[+1]_50 chr3L:17485043-17485163 0.00042 52_[+1]_60 chr3R:26897450-26897570 0.00044 91_[+1]_21 chr3L:8124716-8124836 0.0005 39_[+1]_73 chr2L:18858800-18858920 0.0005 55_[+1]_57 chr2R:21217614-21217734 0.00054 53_[+1]_59 chr3L:20525901-20526021 0.00055 39_[+1]_73 chr2R:10282499-10282619 0.00055 27_[+1]_85 chr3L:2460799-2460919 0.00055 39_[+1]_73 chr2R:22118057-22118177 0.00055 102_[+1]_10 chr2R:21193934-21194054 0.00059 60_[+1]_52 chr3L:20508989-20509109 0.00078 63_[+1]_49 chr3L:12677950-12678070 0.00086 69_[+1]_43 chr3L:10540409-10540529 0.001 7_[+1]_105 chr2R:19477173-19477293 0.001 59_[+1]_53 chrX:247455-247575 0.001 77_[+1]_35 chr3L:7838340-7838460 0.0012 50_[+1]_62 chr3L:7810565-7810685 0.0014 20_[+1]_92 chr3L:2782467-2782587 0.0015 3_[+1]_109 chrX:8520674-8520794 0.0016 66_[+1]_46 chr3L:20834289-20834409 0.0017 7_[+1]_105 chr2L:7158147-7158267 0.0021 106_[+1]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAYRTAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTAYRTAA width=8 seqs=250 chr3R:15842353-15842473 ( 63) TTACGTAA 1 chr3R:10706015-10706135 ( 47) TTACGTAA 1 chr3R:11853623-11853743 ( 44) TTACGTAA 1 chr2R:10845906-10846026 ( 70) TTACGTAA 1 chr3R:11820282-11820402 ( 44) TTACGTAA 1 chr2R:11277619-11277739 ( 70) TTACGTAA 1 chr2L:7070319-7070439 ( 44) TTACGTAA 1 chr2R:15988605-15988725 ( 70) TTACGTAA 1 chr3R:9633273-9633393 ( 60) TTACGTAA 1 chr2L:16303702-16303822 ( 43) TTACGTAA 1 chrX:12123106-12123226 ( 66) TTACGTAA 1 chr3L:4119264-4119384 ( 70) TTACGTAA 1 chrX:17667689-17667809 ( 67) TTACGTAA 1 chr2L:1718643-1718763 ( 69) TTACGTAA 1 chr2L:10771595-10771715 ( 43) TTACGTAA 1 chrX:7155345-7155465 ( 53) TTACGTAA 1 chr3L:11233079-11233199 ( 66) TTACGTAA 1 chr2L:4569555-4569675 ( 67) TTACGTAA 1 chr2L:4594615-4594735 ( 69) TTACGTAA 1 chr2L:6302272-6302392 ( 43) TTACGTAA 1 chr3R:18156338-18156458 ( 69) TTACGTAA 1 chr2L:10300503-10300623 ( 57) TTACGTAA 1 chr2L:2401244-2401364 ( 68) TTACGTAA 1 chr2R:17203951-17204071 ( 43) TTACGTAA 1 chr2R:16682140-16682260 ( 44) TTACGTAA 1 chr2R:11793219-11793339 ( 44) TTACGTAA 1 chr3R:31569788-31569908 ( 49) TTACGTAA 1 chr2L:7106428-7106548 ( 52) TTACGTAA 1 chr2L:2986915-2987035 ( 71) TTACGTAA 1 chrX:15950195-15950315 ( 47) TTACGTAA 1 chr2R:19466938-19467058 ( 27) TTACGTAA 1 chr3R:31969579-31969699 ( 52) TTACGTAA 1 chr3R:10270171-10270291 ( 68) TTACGTAA 1 chr3R:9674335-9674455 ( 59) TTACGTAA 1 chr2R:18409723-18409843 ( 77) TTACGTAA 1 chr3R:4814099-4814219 ( 46) TTACATAA 1 chr2L:7430488-7430608 ( 56) TTATGTAA 1 chrX:21372761-21372881 ( 43) TTATGTAA 1 chr2L:7820527-7820647 ( 44) TTATGTAA 1 chr3L:14005766-14005886 ( 52) TTACATAA 1 chr3R:9455133-9455253 ( 73) TTATGTAA 1 chr3L:16139852-16139972 ( 53) TTACATAA 1 chr2R:7986681-7986801 ( 45) TTATGTAA 1 chr2R:19180078-19180198 ( 67) TTATGTAA 1 chr2L:7521807-7521927 ( 56) TTACATAA 1 chr3R:21760032-21760152 ( 43) TTACATAA 1 chr2L:8257982-8258102 ( 72) TTATGTAA 1 chr2L:448864-448984 ( 47) TTACATAA 1 chr3L:7879106-7879226 ( 44) TTATGTAA 1 chrX:7285056-7285176 ( 46) TTATGTAA 1 chr2R:17624528-17624648 ( 47) TTATGTAA 1 chr2L:13085359-13085479 ( 72) TTATGTAA 1 chr3R:28901903-28902023 ( 81) TTACATAA 1 chr2R:10460381-10460501 ( 69) TTACATAA 1 chr4:1191805-1191925 ( 44) TTACATAA 1 chr3L:14396347-14396467 ( 65) TTATGTAA 1 chr3R:25538443-25538563 ( 104) TTATGTAA 1 chr3L:5578734-5578854 ( 35) TTATGTAA 1 chr2R:7495400-7495520 ( 73) TTACATAA 1 chr3L:1495890-1496010 ( 43) TTACATAA 1 chr3R:4454530-4454650 ( 46) TTATGTAA 1 chr4:739939-740059 ( 67) TTACATAA 1 chr2R:16334251-16334371 ( 48) TTACATAA 1 chr2L:5537186-5537306 ( 39) TTATGTAA 1 chr3L:18838724-18838844 ( 100) TTATGTAA 1 chr2R:22065608-22065728 ( 46) TTATGTAA 1 chr2R:9859115-9859235 ( 29) TTATGTAA 1 chr2R:4815600-4815720 ( 45) TTACATAA 1 chr2L:4905042-4905162 ( 54) TTATGTAA 1 chr3R:31743055-31743175 ( 40) TTACATAA 1 chr3R:7516934-7517054 ( 64) TTATGTAA 1 chr3L:7807846-7807966 ( 47) TTACATAA 1 chr3L:7885523-7885643 ( 32) TTACATAA 1 chr3L:8696098-8696218 ( 37) TTACATAA 1 chr3L:10672134-10672254 ( 76) TTATGTAA 1 chr3L:9857695-9857815 ( 61) TTACATAA 1 chr2R:5681359-5681479 ( 41) TTATGTAA 1 chr2R:7768763-7768883 ( 48) TTACATAA 1 chr2R:18801848-18801968 ( 42) TTACATAA 1 chr2L:6257222-6257342 ( 44) TTATGTAA 1 chr2L:14214394-14214514 ( 43) TTACATAA 1 chr3L:16031684-16031804 ( 46) TTACATAA 1 chr3L:3258667-3258787 ( 74) TTACATAA 1 chr3L:15888350-15888470 ( 68) TTACATAA 1 chr2R:12963107-12963227 ( 43) TTACATAA 1 chr2L:8324833-8324953 ( 69) TTATGTAA 1 chr2L:5101063-5101183 ( 71) TTACATAA 1 chr3R:16128100-16128220 ( 61) TTATGTAA 1 chrX:5414558-5414678 ( 75) TTATGTAA 1 chr3R:31420468-31420588 ( 38) TTATGTAA 1 chr2L:7432169-7432289 ( 48) TTATGTAA 1 chrX:636360-636480 ( 45) TTATGTAA 1 chr3R:16148851-16148971 ( 64) TTATGTAA 1 chr3R:11561787-11561907 ( 110) TTACATAA 1 chr2L:3120932-3121052 ( 61) TTACATAA 1 chr3R:13722137-13722257 ( 58) TTACATAA 1 chr3R:30014619-30014739 ( 70) TTACATAA 1 chr2R:23714492-23714612 ( 67) TTACATAA 1 chr3R:23870104-23870224 ( 53) TTACATAA 1 chr3L:11705041-11705161 ( 69) TTACATAA 1 chr3R:5458766-5458886 ( 41) TTATGTAA 1 chrX:2792037-2792157 ( 47) TTATGTAA 1 chr3L:15162144-15162264 ( 63) TTATGTAA 1 chr3L:7822314-7822434 ( 70) TTATGTAA 1 chr2R:6008545-6008665 ( 71) TTATGTAA 1 chr2R:9430193-9430313 ( 66) TTACATAA 1 chr2R:11451184-11451304 ( 49) TTACATAA 1 chr3L:16147467-16147587 ( 113) TTACATAA 1 chr3R:27135101-27135221 ( 33) TTATGTAA 1 chr2R:25086037-25086157 ( 50) TTATGTAA 1 chr3R:23942185-23942305 ( 96) TTACATAA 1 chr3L:1192453-1192573 ( 48) TTATATAA 1 chr3L:20001392-20001512 ( 70) TTATATAA 1 chr2L:9152552-9152672 ( 72) TTATATAA 1 chr3R:31951293-31951413 ( 92) TTATATAA 1 chr3L:17806765-17806885 ( 52) TTATATAA 1 chr4:989197-989317 ( 44) TTATATAA 1 chr2R:16691912-16692032 ( 55) TTATATAA 1 chr2L:9335532-9335652 ( 68) TTATATAA 1 chrX:11425529-11425649 ( 46) TTATATAA 1 chr3R:31343896-31344016 ( 43) TTATATAA 1 chr2R:6025846-6025966 ( 41) TTATATAA 1 chr2R:19987505-19987625 ( 67) TTATATAA 1 chrX:9879378-9879498 ( 68) TTATATAA 1 chr2L:2441796-2441916 ( 63) TTATATAA 1 chr2L:19567462-19567582 ( 69) TTATATAA 1 chr2L:15345846-15345966 ( 70) TTATATAA 1 chr3R:13772443-13772563 ( 22) TTATATAA 1 chrX:1876624-1876744 ( 71) TTATATAA 1 chr3R:12992341-12992461 ( 66) TTATATAA 1 chr3L:13483706-13483826 ( 78) TTATATAA 1 chr2R:24538482-24538602 ( 43) TTATATAA 1 chr3R:10762059-10762179 ( 96) TTATATAA 1 chr4:92140-92260 ( 70) TTATATAA 1 chr3L:9697595-9697715 ( 46) TTATATAA 1 chr3L:22183707-22183827 ( 42) TTATATAA 1 chrX:18155081-18155201 ( 48) TTATATAA 1 chr2R:22338483-22338603 ( 70) TTATATAA 1 chr2L:1979335-1979455 ( 45) TTATATAA 1 chr3L:1238270-1238390 ( 69) TTATATAA 1 chr2R:17585672-17585792 ( 73) TTATATAA 1 chr2R:12238539-12238659 ( 69) TTATATAA 1 chr3R:24600916-24601036 ( 76) TTATATAA 1 chr2R:24736001-24736121 ( 86) TTATATAA 1 chr3L:21766991-21767111 ( 46) TTATATAA 1 chr3L:16283935-16284055 ( 68) TTATATAA 1 chr2L:6567267-6567387 ( 43) TTATATAA 1 chr2L:1912180-1912300 ( 44) TTATATAA 1 chr3L:19102451-19102571 ( 39) TTATATAA 1 chr3L:7818279-7818399 ( 75) TTATATAA 1 chr2R:10732008-10732128 ( 48) TTATATAA 1 chr2R:24542013-24542133 ( 42) TTATATAA 1 chr3R:6397200-6397320 ( 72) TTATATAA 1 chr2L:206488-206608 ( 84) TTATATAA 1 chr3L:11629903-11630023 ( 69) TTATATAA 1 chrX:5761016-5761136 ( 68) TTATATAA 1 chr3L:2503276-2503396 ( 47) TTATATAA 1 chr3R:8130250-8130370 ( 70) TTATATAA 1 chr2R:6789945-6790065 ( 46) TTATATAA 1 chr3R:10182257-10182377 ( 67) TTATATAA 1 chr2R:16079460-16079580 ( 70) TTATATAA 1 chr3R:27602614-27602734 ( 72) TTATATAA 1 chr3R:28883356-28883476 ( 43) TTATATAA 1 chr3R:9139874-9139994 ( 69) TTATATAA 1 chr3R:11938858-11938978 ( 40) TTATATAA 1 chr2R:14234838-14234958 ( 30) TTATATAA 1 chr2L:4377120-4377240 ( 43) TTATATAA 1 chr3R:7211686-7211806 ( 46) TTATATAA 1 chr2L:16739242-16739362 ( 73) TTATATAA 1 chr2R:18296876-18296996 ( 44) TTATATAA 1 chr2R:2144718-2144838 ( 46) TTATATAA 1 chr3L:16570204-16570324 ( 41) TTATATAA 1 chr2L:9151250-9151370 ( 73) TTATATAA 1 chr3R:5310417-5310537 ( 42) TTATATAA 1 chr2R:17412317-17412437 ( 71) TTATATAA 1 chr2L:6510997-6511117 ( 47) TTATATAA 1 chr2L:14219548-14219668 ( 43) TTATATAA 1 chr3L:17415137-17415257 ( 42) TTATATAA 1 chr2R:21688797-21688917 ( 52) TTATATAA 1 chrX:8529844-8529964 ( 50) TTATATAA 1 chr3L:9829778-9829898 ( 31) TTATATAA 1 chr2L:2579808-2579928 ( 31) TTATATAA 1 chr3L:21206653-21206773 ( 45) TTATATAA 1 chr3R:18411344-18411464 ( 43) TTATATAA 1 chrX:2178916-2179036 ( 44) TTATATAA 1 chr2L:12481897-12482017 ( 72) TTATATAA 1 chr3R:9141053-9141173 ( 73) TTATATAA 1 chr2L:204696-204816 ( 65) TTATATAA 1 chrX:8569778-8569898 ( 73) TTATATAA 1 chr2L:10386963-10387083 ( 76) TTATATAA 1 chr3R:28875451-28875571 ( 40) TTATATAA 1 chr3L:21283934-21284054 ( 57) TTATATAA 1 chr3R:13686108-13686228 ( 40) TTGCGTAA 1 chrX:3406655-3406775 ( 69) TTGCGTAA 1 chr2R:24973387-24973507 ( 59) TTGCGTAA 1 chr2R:23937166-23937286 ( 81) TTGCGTAA 1 chr3R:6107492-6107612 ( 46) TTGCGTAA 1 chrX:7340097-7340217 ( 70) TTGCGTAA 1 chr2R:12596767-12596887 ( 44) TTGCATAA 1 chr3L:21568440-21568560 ( 58) TTGCATAA 1 chr3R:16606049-16606169 ( 70) TTGCATAA 1 chr2L:9189030-9189150 ( 65) TTGCATAA 1 chr2R:16849167-16849287 ( 70) TTGCATAA 1 chr3L:20386507-20386627 ( 71) TTGCATAA 1 chrX:8115407-8115527 ( 74) TTGTGTAA 1 chr3R:30175331-30175451 ( 76) TTGCATAA 1 chrX:6354319-6354439 ( 89) TTGCATAA 1 chrX:6790208-6790328 ( 19) TTGCATAA 1 chrX:16089128-16089248 ( 74) TTGCATAA 1 chr3R:30059147-30059267 ( 67) TTGCATAA 1 chr2L:43173-43293 ( 78) TTGCATAA 1 chrX:7702299-7702419 ( 61) TTGCATAA 1 chrX:12906466-12906586 ( 76) TTGTATAA 1 chr3L:7842676-7842796 ( 47) TTGTATAA 1 chrX:20470808-20470928 ( 37) TTGTATAA 1 chr3R:23765696-23765816 ( 105) TTACGCAA 1 chr2L:485266-485386 ( 72) TTACGCAA 1 chr3L:8583773-8583893 ( 39) TTACGCAA 1 chr2L:10751352-10751472 ( 40) TTACGCAA 1 chr2R:23382760-23382880 ( 54) TTACGCAA 1 chr3L:18227095-18227215 ( 37) TTATGCAA 1 chr2L:16321991-16322111 ( 62) TTATGCAA 1 chr2L:54911-55031 ( 35) TTATGCAA 1 chr3L:22272242-22272362 ( 53) TTATGCAA 1 chr2L:42306-42426 ( 63) TTATGCAA 1 chr2L:4995149-4995269 ( 58) TTATGCAA 1 chr3R:4470825-4470945 ( 56) TTATACAA 1 chr2L:6911847-6911967 ( 76) TTATACAA 1 chrX:6980903-6981023 ( 63) TTATACAA 1 chr3L:17485043-17485163 ( 53) TTATACAA 1 chr3R:26897450-26897570 ( 92) TGACGTAA 1 chr3L:8124716-8124836 ( 40) TGACATAA 1 chr2L:18858800-18858920 ( 56) TGATGTAA 1 chr2R:21217614-21217734 ( 54) TGATATAA 1 chr3L:20525901-20526021 ( 40) TTGCGCAA 1 chr2R:10282499-10282619 ( 28) TTGCGCAA 1 chr3L:2460799-2460919 ( 40) TTGCGCAA 1 chr2R:22118057-22118177 ( 103) TTGCGCAA 1 chr2R:21193934-21194054 ( 61) TTGCACAA 1 chr3L:20508989-20509109 ( 64) TTATGTCA 1 chr3L:12677950-12678070 ( 70) GTATATAA 1 chr3L:10540409-10540529 ( 8) CTACGTAA 1 chr2R:19477173-19477293 ( 60) TGACGCAA 1 chrX:247455-247575 ( 78) TGACGCAA 1 chr3L:7838340-7838460 ( 51) TGATGCAA 1 chr3L:7810565-7810685 ( 21) TTACGTAT 1 chr3L:2782467-2782587 ( 4) TTATAAAA 1 chrX:8520674-8520794 ( 67) TTGCGTCA 1 chr3L:20834289-20834409 ( 8) GTGTGTAA 1 chr2L:7158147-7158267 ( 107) TTGTTTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAYRTAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 6.80735 E= 1.4e-297 -1461 -565 -465 174 -1461 -1461 -284 172 153 -1461 -69 -1461 -1461 112 -1461 93 92 -1461 107 -620 -624 -113 -1461 162 171 -465 -1461 -1461 171 -1461 -1461 -620 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAYRTAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 250 E= 1.4e-297 0.000000 0.004000 0.008000 0.988000 0.000000 0.000000 0.028000 0.972000 0.876000 0.000000 0.124000 0.000000 0.000000 0.436000 0.000000 0.564000 0.576000 0.000000 0.420000 0.004000 0.004000 0.092000 0.000000 0.904000 0.992000 0.008000 0.000000 0.000000 0.996000 0.000000 0.000000 0.004000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAYRTAA MEME-1 regular expression -------------------------------------------------------------------------------- TTA[TC][AG]TAA -------------------------------------------------------------------------------- Time 6.99 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGAYNG MEME-2 width = 8 sites = 24 llr = 221 E-value = 2.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGAYNG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::8:3: pos.-specific C ::a::42: probability G aa:a323a matrix T :::::52: bits 2.3 **** * 2.1 **** * 1.9 **** * 1.6 **** * Relative 1.4 **** * Entropy 1.2 ***** * (13.3 bits) 0.9 ***** * 0.7 ****** * 0.5 ****** * 0.2 ****** * 0.0 -------- Multilevel GGCGATGG consensus GCA sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGAYNG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11425529-11425649 106 4.02e-06 GCACGATTCT GGCGACGG TTCTTCG chr3R:11938858-11938978 100 4.02e-06 CCGAACGAAT GGCGACGG CAAATTTGTT chr3R:9455133-9455253 5 9.91e-06 GGTA GGCGATGG ATCGGTACCG chr2L:10771595-10771715 66 9.91e-06 GGATGGGAAT GGCGATGG AGTCGCTGGT chrX:3406655-3406775 21 9.91e-06 CGATTTCGAT GGCGATGG CGTAATACAT chr2R:18801848-18801968 104 9.91e-06 GGCAgagatc ggcgatgg gagatggag chr2R:10282499-10282619 108 1.39e-05 CGGCGGCCAA GGCGACCG CTCAC chr2L:7820527-7820647 33 2.85e-05 CAACTAGGAA GGCGACAG TTATTATGTA chr2L:4569555-4569675 80 2.85e-05 CGTAACATTA GGCGATCG TCCAATTACT chr2R:21688797-21688917 96 2.85e-05 GCGCAAATCG GGCGACAG TTCGAAACTA chr2L:10386963-10387083 13 2.85e-05 TGCCCATCAA GGCGGCGG TCAACAAATC chr3R:27135101-27135221 111 2.85e-05 TGTGTCTGCC GGCgatcg gg chrX:21372761-21372881 97 5.12e-05 AGAGAGTCGC GGCGATAG CGAATTATGT chr3R:5458766-5458886 102 5.12e-05 TGCCGCATGC GGCGACTG CTTTAAGGTA chr2R:23382760-23382880 16 5.12e-05 AGCGGAAAAT GGCGGTGG GAACCATTAG chr3R:10706015-10706135 26 5.99e-05 GAGCGGAAAA GGCGATTG ATCTCCATTT chr3L:16139852-16139972 103 7.45e-05 GTGCTTAAAA GGCGGCAG CGCAACTATA chr3L:9697595-9697715 1 7.45e-05 . GGCGAGCG TAATGGAACC chr3L:9829778-9829898 56 7.45e-05 CTCGACTTTC GGCGAGCG GACAAGTCAA chr3R:23942185-23942305 28 7.45e-05 AAACAAAACA GGCGGCAG CGGTACATGC chrX:18155081-18155201 112 9.30e-05 GCAGAAAGGG GGCGGTAG A chr3R:10182257-10182377 82 1.05e-04 TAATGCAAAC GGCGAGTG AAGTGACAGC chrX:5414558-5414678 56 1.05e-04 gtgtgtATTT GGCGAGTG TGTGTTGTTT chr3R:31420468-31420588 104 1.05e-04 AGCGGACCAC GGCGGTTG GAACGGAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGAYNG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11425529-11425649 4e-06 105_[+2]_7 chr3R:11938858-11938978 4e-06 99_[+2]_13 chr3R:9455133-9455253 9.9e-06 4_[+2]_108 chr2L:10771595-10771715 9.9e-06 65_[+2]_47 chrX:3406655-3406775 9.9e-06 20_[+2]_92 chr2R:18801848-18801968 9.9e-06 103_[+2]_9 chr2R:10282499-10282619 1.4e-05 107_[+2]_5 chr2L:7820527-7820647 2.9e-05 32_[+2]_80 chr2L:4569555-4569675 2.9e-05 79_[+2]_33 chr2R:21688797-21688917 2.9e-05 95_[+2]_17 chr2L:10386963-10387083 2.9e-05 12_[+2]_100 chr3R:27135101-27135221 2.9e-05 110_[+2]_2 chrX:21372761-21372881 5.1e-05 96_[+2]_16 chr3R:5458766-5458886 5.1e-05 101_[+2]_11 chr2R:23382760-23382880 5.1e-05 15_[+2]_97 chr3R:10706015-10706135 6e-05 25_[+2]_87 chr3L:16139852-16139972 7.5e-05 102_[+2]_10 chr3L:9697595-9697715 7.5e-05 [+2]_112 chr3L:9829778-9829898 7.5e-05 55_[+2]_57 chr3R:23942185-23942305 7.5e-05 27_[+2]_85 chrX:18155081-18155201 9.3e-05 111_[+2]_1 chr3R:10182257-10182377 0.0001 81_[+2]_31 chrX:5414558-5414678 0.0001 55_[+2]_57 chr3R:31420468-31420588 0.0001 103_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGAYNG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGAYNG width=8 seqs=24 chrX:11425529-11425649 ( 106) GGCGACGG 1 chr3R:11938858-11938978 ( 100) GGCGACGG 1 chr3R:9455133-9455253 ( 5) GGCGATGG 1 chr2L:10771595-10771715 ( 66) GGCGATGG 1 chrX:3406655-3406775 ( 21) GGCGATGG 1 chr2R:18801848-18801968 ( 104) GGCGATGG 1 chr2R:10282499-10282619 ( 108) GGCGACCG 1 chr2L:7820527-7820647 ( 33) GGCGACAG 1 chr2L:4569555-4569675 ( 80) GGCGATCG 1 chr2R:21688797-21688917 ( 96) GGCGACAG 1 chr2L:10386963-10387083 ( 13) GGCGGCGG 1 chr3R:27135101-27135221 ( 111) GGCGATCG 1 chrX:21372761-21372881 ( 97) GGCGATAG 1 chr3R:5458766-5458886 ( 102) GGCGACTG 1 chr2R:23382760-23382880 ( 16) GGCGGTGG 1 chr3R:10706015-10706135 ( 26) GGCGATTG 1 chr3L:16139852-16139972 ( 103) GGCGGCAG 1 chr3L:9697595-9697715 ( 1) GGCGAGCG 1 chr3L:9829778-9829898 ( 56) GGCGAGCG 1 chr3R:23942185-23942305 ( 28) GGCGGCAG 1 chrX:18155081-18155201 ( 112) GGCGGTAG 1 chr3R:10182257-10182377 ( 82) GGCGAGTG 1 chrX:5414558-5414678 ( 56) GGCGAGTG 1 chr3R:31420468-31420588 ( 104) GGCGGTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGAYNG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 2.7e+002 -1123 -1123 232 -1123 -1123 -1123 232 -1123 -1123 232 -1123 -1123 -1123 -1123 232 -1123 130 -1123 32 -1123 -1123 90 -27 64 -28 5 73 -50 -1123 -1123 232 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGAYNG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.7e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.375000 0.166667 0.458333 0.250000 0.208333 0.333333 0.208333 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGAYNG MEME-2 regular expression -------------------------------------------------------------------------------- GGCG[AG][TC][GACT]G -------------------------------------------------------------------------------- Time 12.78 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGGCAA MEME-3 width = 8 sites = 9 llr = 96 E-value = 5.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGGCAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::7a pos.-specific C 19a::a1: probability G 91:aa:2: matrix T :::::::: bits 2.3 **** 2.1 **** 1.9 ****** 1.6 ****** * Relative 1.4 ****** * Entropy 1.2 ****** * (15.3 bits) 0.9 ****** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCGGCAA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGCAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:10771595-10771715 102 6.05e-06 TGGTTGCCCC GCCGGCAA CTTTTGTGCT chr2L:3120932-3121052 49 6.05e-06 TGTTACTGTT GCCGGCAA AATGTTACAT chr3L:15162144-15162264 55 6.05e-06 GCAAGTGGAG GCCGGCAA TTATGTAATT chr3R:27135101-27135221 74 6.05e-06 TGTTTATGTC GCCGGCAA CTGATAAGCA chr3L:8583773-8583893 11 1.01e-05 AGCCCGCCCA GCCGGCGA GAACTTAATT chr3R:11938858-11938978 77 1.01e-05 TTTCTCCAAA GCCGGCGA CAACTCCGAA chr2L:54911-55031 86 1.41e-05 ATCGTACCGT GCCGGCCA ACATTTTGTC chrX:11425529-11425649 69 2.62e-05 ACAAAGCCAA CCCGGCAA TGGGATGACC chr2L:4995149-4995269 50 2.62e-05 CTTTTCAGCT GGCGGCAA TTATGCAATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGCAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10771595-10771715 6.1e-06 101_[+3]_11 chr2L:3120932-3121052 6.1e-06 48_[+3]_64 chr3L:15162144-15162264 6.1e-06 54_[+3]_58 chr3R:27135101-27135221 6.1e-06 73_[+3]_39 chr3L:8583773-8583893 1e-05 10_[+3]_102 chr3R:11938858-11938978 1e-05 76_[+3]_36 chr2L:54911-55031 1.4e-05 85_[+3]_27 chrX:11425529-11425649 2.6e-05 68_[+3]_44 chr2L:4995149-4995269 2.6e-05 49_[+3]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGCAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGGCAA width=8 seqs=9 chr2L:10771595-10771715 ( 102) GCCGGCAA 1 chr2L:3120932-3121052 ( 49) GCCGGCAA 1 chr3L:15162144-15162264 ( 55) GCCGGCAA 1 chr3R:27135101-27135221 ( 74) GCCGGCAA 1 chr3L:8583773-8583893 ( 11) GCCGGCGA 1 chr3R:11938858-11938978 ( 77) GCCGGCGA 1 chr2L:54911-55031 ( 86) GCCGGCCA 1 chrX:11425529-11425649 ( 69) CCCGGCAA 1 chr2L:4995149-4995269 ( 50) GGCGGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGCAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4638 E= 5.2e+004 -982 -85 215 -982 -982 214 -85 -982 -982 231 -982 -982 -982 -982 232 -982 -982 -982 232 -982 -982 231 -982 -982 113 -85 15 -982 172 -982 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGCAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 5.2e+004 0.000000 0.111111 0.888889 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.111111 0.222222 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGCAA MEME-3 regular expression -------------------------------------------------------------------------------- GCCGGC[AG]A -------------------------------------------------------------------------------- Time 18.52 secs. ******************************************************************************** ******************************************************************************** MOTIF TCKCTGGK MEME-4 width = 8 sites = 9 llr = 94 E-value = 5.6e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCKCTGGK MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:a:::: probability G ::7::aa6 matrix T a:3:a::4 bits 2.3 * * ** 2.1 * * ** 1.9 ** **** 1.6 ** **** Relative 1.4 ** **** Entropy 1.2 ******** (15.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCGCTGGG consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCKCTGGK MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:4119264-4119384 33 5.74e-06 GCGAAAGGGA TCGCTGGG AGTTGACGCA chrX:2792037-2792157 110 5.74e-06 GTCGACGGCT TCGCTGGG AGT chr3L:14396347-14396467 12 1.42e-05 GGAAGATGAA TCGCTGGT CACGAGCATG chr2L:10771595-10771715 76 1.42e-05 GGCGATGGAG TCGCTGGT AACCCGAGTG chr2L:43173-43293 102 1.42e-05 AATACACAAC TCGCTGGT GAACGAGACA chr3R:23870104-23870224 95 1.42e-05 TTGTTTGGCG TCGCTGGT AGTTTGGTCT chr2R:24736001-24736121 98 2.26e-05 ATATAACATT TCTCTGGG GGCAACCGTA chrX:5414558-5414678 97 2.26e-05 TAAGGGGCTC TCTCTGGG CTCAGTCGCA chr2R:16682140-16682260 12 2.26e-05 AATGGATTGC TCTCTGGG GAGACATCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCKCTGGK MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:4119264-4119384 5.7e-06 32_[+4]_80 chrX:2792037-2792157 5.7e-06 109_[+4]_3 chr3L:14396347-14396467 1.4e-05 11_[+4]_101 chr2L:10771595-10771715 1.4e-05 75_[+4]_37 chr2L:43173-43293 1.4e-05 101_[+4]_11 chr3R:23870104-23870224 1.4e-05 94_[+4]_18 chr2R:24736001-24736121 2.3e-05 97_[+4]_15 chrX:5414558-5414678 2.3e-05 96_[+4]_16 chr2R:16682140-16682260 2.3e-05 11_[+4]_101 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCKCTGGK MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCKCTGGK width=8 seqs=9 chr3L:4119264-4119384 ( 33) TCGCTGGG 1 chrX:2792037-2792157 ( 110) TCGCTGGG 1 chr3L:14396347-14396467 ( 12) TCGCTGGT 1 chr2L:10771595-10771715 ( 76) TCGCTGGT 1 chr2L:43173-43293 ( 102) TCGCTGGT 1 chr3R:23870104-23870224 ( 95) TCGCTGGT 1 chr2R:24736001-24736121 ( 98) TCTCTGGG 1 chrX:5414558-5414678 ( 97) TCTCTGGG 1 chr2R:16682140-16682260 ( 12) TCTCTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCKCTGGK MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4638 E= 5.6e+005 -982 -982 -982 176 -982 231 -982 -982 -982 -982 173 18 -982 231 -982 -982 -982 -982 -982 176 -982 -982 232 -982 -982 -982 232 -982 -982 -982 147 59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCKCTGGK MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 5.6e+005 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.555556 0.444444 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCKCTGGK MEME-4 regular expression -------------------------------------------------------------------------------- TC[GT]CTGG[GT] -------------------------------------------------------------------------------- Time 24.25 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGCATCG MEME-5 width = 8 sites = 4 llr = 47 E-value = 1.8e+006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGCATCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a::a::: pos.-specific C :::a::a: probability G a:a::::a matrix T :::::a:: bits 2.3 * ** ** 2.1 * ** ** 1.9 * ** *** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (16.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGCATCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCATCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7285056-7285176 70 8.89e-06 TAATCGAGGC GAGCATCG CACTGGGTCG chr2R:17585672-17585792 46 8.89e-06 CATCCATCCG GAGCATCG GTTGTTTGCT chr3L:11705041-11705161 81 8.89e-06 ACATAACACA GAGCATCG TAAAAACTAC chr2L:10751352-10751472 10 8.89e-06 TGTTCTTGC GAGCATCG TATTTGCTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCATCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7285056-7285176 8.9e-06 69_[+5]_43 chr2R:17585672-17585792 8.9e-06 45_[+5]_67 chr3L:11705041-11705161 8.9e-06 80_[+5]_32 chr2L:10751352-10751472 8.9e-06 9_[+5]_103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCATCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGCATCG width=8 seqs=4 chrX:7285056-7285176 ( 70) GAGCATCG 1 chr2R:17585672-17585792 ( 46) GAGCATCG 1 chr3L:11705041-11705161 ( 81) GAGCATCG 1 chr2L:10751352-10751472 ( 10) GAGCATCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCATCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 1.8e+006 -865 -865 231 -865 172 -865 -865 -865 -865 -865 231 -865 -865 231 -865 -865 172 -865 -865 -865 -865 -865 -865 176 -865 231 -865 -865 -865 -865 231 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCATCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.8e+006 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCATCG MEME-5 regular expression -------------------------------------------------------------------------------- GAGCATCG -------------------------------------------------------------------------------- Time 29.95 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23382760-23382880 4.91e-03 15_[+2(5.12e-05)]_97 chr3R:23942185-23942305 2.74e-03 27_[+2(7.45e-05)]_85 chr2L:18858800-18858920 6.61e-02 120 chr2R:18409723-18409843 2.26e-01 76_[+1(2.89e-05)]_36 chr2R:25086037-25086157 1.09e-01 120 chr2L:4995149-4995269 7.16e-03 49_[+3(2.62e-05)]_63 chr3R:27135101-27135221 1.24e-05 73_[+3(6.05e-06)]_26_[+3(1.01e-05)]_\ 5 chr3L:16147467-16147587 1.41e-01 120 chr3L:21283934-21284054 1.47e-01 120 chr2R:11451184-11451304 5.84e-02 120 chr2R:9430193-9430313 3.69e-02 120 chr3R:28875451-28875571 2.77e-01 120 chr2R:6008545-6008665 1.89e-01 120 chr3L:7822314-7822434 3.61e-01 120 chr3R:9674335-9674455 5.47e-02 58_[+1(2.89e-05)]_54 chr3R:10270171-10270291 1.70e-02 44_[+4(9.12e-05)]_15_[+1(2.89e-05)]_\ 45 chr3L:15162144-15162264 2.03e-03 54_[+3(6.05e-06)]_58 chr2L:10386963-10387083 3.50e-03 12_[+2(2.85e-05)]_100 chr3R:31969579-31969699 1.03e-02 51_[+1(2.89e-05)]_61 chrX:8569778-8569898 2.39e-01 120 chr2R:19466938-19467058 2.49e-01 26_[+1(2.89e-05)]_86 chrX:7702299-7702419 3.72e-01 120 chrX:7340097-7340217 2.57e-01 120 chrX:2792037-2792157 3.28e-04 109_[+4(5.74e-06)]_3 chr2L:204696-204816 3.83e-01 120 chr3R:26897450-26897570 3.62e-01 120 chrX:15950195-15950315 1.95e-01 46_[+1(2.89e-05)]_66 chr3R:5458766-5458886 4.37e-03 101_[+2(5.12e-05)]_11 chr2L:2986915-2987035 6.57e-02 70_[+1(2.89e-05)]_42 chr2L:10751352-10751472 1.19e-03 9_[+5(8.89e-06)]_103 chr3R:9141053-9141173 2.09e-01 120 chr3L:7810565-7810685 3.14e-01 120 chr3R:6107492-6107612 1.11e-02 120 chr3L:11705041-11705161 1.08e-03 80_[+5(8.89e-06)]_32 chr2L:12481897-12482017 4.59e-01 120 chr3R:23870104-23870224 2.98e-03 94_[+4(1.42e-05)]_18 chrX:2178916-2179036 1.04e-01 120 chr2R:23714492-23714612 3.03e-02 120 chr3R:18411344-18411464 2.61e-02 120 chr2L:7106428-7106548 2.31e-02 51_[+1(2.89e-05)]_61 chr3L:21206653-21206773 3.11e-01 120 chr2L:2579808-2579928 1.77e-01 120 chr3L:8124716-8124836 2.03e-01 120 chr3R:30014619-30014739 4.09e-02 120 chr3L:20834289-20834409 4.78e-01 120 chr3R:13722137-13722257 6.73e-02 120 chrX:20470808-20470928 2.92e-01 120 chr2L:3120932-3121052 6.30e-03 48_[+3(6.05e-06)]_64 chr3L:9829778-9829898 1.71e-02 55_[+2(7.45e-05)]_57 chr3R:11561787-11561907 6.22e-02 120 chr3R:16148851-16148971 2.21e-01 120 chrX:8529844-8529964 2.15e-01 120 chr3R:31569788-31569908 9.86e-03 48_[+1(2.89e-05)]_64 chrX:636360-636480 1.31e-01 120 chr2R:22118057-22118177 1.89e-01 120 chr3L:17485043-17485163 3.30e-01 120 chr2R:21688797-21688917 1.36e-03 95_[+2(2.85e-05)]_17 chr2L:7432169-7432289 1.47e-02 120 chr3R:31420468-31420588 2.65e-02 120 chr2R:11793219-11793339 5.97e-02 43_[+1(2.89e-05)]_69 chr2R:16682140-16682260 7.68e-04 11_[+4(2.26e-05)]_24_[+1(2.89e-05)]_\ 69 chr3L:17415137-17415257 5.97e-01 120 chr2L:14219548-14219668 6.85e-02 120 chr2L:6510997-6511117 2.93e-01 120 chr2R:17412317-17412437 3.27e-01 120 chrX:5414558-5414678 9.25e-04 96_[+4(2.26e-05)]_16 chr3R:5310417-5310537 6.53e-02 120 chr2R:17203951-17204071 2.31e-01 42_[+1(2.89e-05)]_70 chr2L:9151250-9151370 4.84e-01 120 chr3R:16128100-16128220 1.20e-01 120 chr3L:16570204-16570324 1.00e-02 120 chr2L:42306-42426 1.14e-01 120 chr2L:5101063-5101183 6.07e-02 120 chr2L:43173-43293 2.26e-04 101_[+4(1.42e-05)]_11 chr3L:22272242-22272362 5.25e-01 120 chrX:6980903-6981023 1.34e-02 120 chr2L:8324833-8324953 2.51e-02 120 chr2R:12963107-12963227 1.58e-01 120 chr3L:15888350-15888470 1.56e-01 120 chr2R:2144718-2144838 5.33e-01 120 chr2R:23937166-23937286 3.03e-01 120 chr3L:3258667-3258787 2.44e-02 120 chr2R:18296876-18296996 3.60e-01 120 chr2L:16739242-16739362 1.15e-01 120 chr3L:16031684-16031804 1.99e-01 120 chr2L:14214394-14214514 4.13e-01 120 chr2L:2401244-2401364 2.86e-02 67_[+1(2.89e-05)]_45 chr2L:6257222-6257342 2.66e-02 120 chr3R:7211686-7211806 5.79e-01 120 chrX:247455-247575 2.18e-03 97_[+5(7.10e-05)]_15 chr2L:4377120-4377240 1.68e-01 120 chr3R:30059147-30059267 4.62e-02 120 chr2R:14234838-14234958 8.51e-03 120 chr3L:12677950-12678070 1.50e-01 120 chr3R:11938858-11938978 3.98e-05 76_[+3(1.01e-05)]_15_[+2(4.02e-06)]_\ 13 chr2R:18801848-18801968 5.43e-04 103_[+2(9.91e-06)]_9 chr2R:7768763-7768883 1.19e-02 120 chr3R:9139874-9139994 1.01e-01 120 chr3R:28883356-28883476 1.39e-01 120 chr3R:27602614-27602734 3.22e-01 120 chr2R:5681359-5681479 4.18e-02 120 chr3L:9857695-9857815 1.44e-01 120 chr3L:10672134-10672254 2.80e-01 120 chr2R:16079460-16079580 3.05e-01 120 chr3R:10182257-10182377 5.42e-03 120 chr2R:6789945-6790065 6.28e-03 120 chr3R:8130250-8130370 2.78e-01 120 chr3L:8696098-8696218 1.03e-01 120 chr3L:2503276-2503396 2.21e-01 120 chr3L:7885523-7885643 4.66e-01 120 chrX:5761016-5761136 4.82e-01 120 chr2L:10300503-10300623 9.34e-02 56_[+1(2.89e-05)]_56 chr3L:7842676-7842796 3.53e-02 120 chr2R:24973387-24973507 2.89e-01 120 chr3R:18156338-18156458 1.18e-03 68_[+1(2.89e-05)]_44 chr3L:8583773-8583893 3.96e-03 10_[+3(1.01e-05)]_102 chr3L:7807846-7807966 5.92e-02 120 chr3L:11629903-11630023 1.24e-01 120 chr2L:206488-206608 1.54e-01 120 chr3R:6397200-6397320 5.44e-02 120 chr2L:6302272-6302392 2.23e-02 42_[+1(2.89e-05)]_70 chrX:3406655-3406775 1.31e-03 20_[+2(9.91e-06)]_92 chr2L:4594615-4594735 8.88e-02 68_[+1(2.89e-05)]_44 chrX:16089128-16089248 5.18e-01 120 chr2R:24542013-24542133 1.12e-01 120 chr2R:10732008-10732128 8.52e-02 120 chr3L:7818279-7818399 2.00e-01 120 chr2L:4569555-4569675 1.08e-03 66_[+1(2.89e-05)]_5_[+2(2.85e-05)]_\ 33 chr3L:2782467-2782587 3.57e-01 120 chr3L:7838340-7838460 8.20e-01 120 chr3R:7516934-7517054 9.66e-02 120 chr3L:19102451-19102571 6.75e-03 120 chr3R:13686108-13686228 1.89e-01 120 chr3R:31743055-31743175 2.41e-01 120 chr2L:4905042-4905162 2.14e-01 120 chr3L:11233079-11233199 7.54e-02 65_[+1(2.89e-05)]_47 chrX:7155345-7155465 3.00e-02 52_[+1(2.89e-05)]_60 chr2L:10771595-10771715 7.92e-08 42_[+1(2.89e-05)]_15_[+2(9.91e-06)]_\ 2_[+4(1.42e-05)]_18_[+3(6.05e-06)]_11 chr2L:1912180-1912300 4.38e-02 120 chr2L:1718643-1718763 1.46e-02 68_[+1(2.89e-05)]_44 chrX:6790208-6790328 1.14e-01 120 chr2R:4815600-4815720 7.07e-02 120 chrX:17667689-17667809 6.77e-03 66_[+1(2.89e-05)]_46 chrX:6354319-6354439 1.90e-01 120 chr2R:9859115-9859235 6.46e-02 120 chr2R:22065608-22065728 2.34e-01 120 chr3L:18838724-18838844 1.67e-01 120 chr2L:6567267-6567387 1.67e-01 120 chr2R:19477173-19477293 4.54e-01 120 chr3R:30175331-30175451 1.43e-01 120 chr2L:5537186-5537306 1.52e-02 120 chr3L:4119264-4119384 1.90e-04 32_[+4(5.74e-06)]_29_[+1(2.89e-05)]_\ 43 chr2L:6911847-6911967 6.01e-01 120 chr3L:16283935-16284055 5.01e-02 120 chr2L:54911-55031 5.74e-04 85_[+3(1.41e-05)]_27 chrX:12123106-12123226 2.94e-02 65_[+1(2.89e-05)]_47 chr3L:21766991-21767111 4.96e-01 120 chr3L:2460799-2460919 1.31e-02 120 chr2L:16321991-16322111 3.39e-01 120 chr2R:21193934-21194054 2.07e-01 120 chr2R:16334251-16334371 9.14e-02 120 chrX:8115407-8115527 1.94e-01 120 chr2R:24736001-24736121 3.81e-04 97_[+4(2.26e-05)]_15 chr2L:16303702-16303822 2.09e-01 42_[+1(2.89e-05)]_70 chr4:739939-740059 4.95e-02 120 chr3R:24600916-24601036 4.49e-02 120 chr3L:18227095-18227215 4.39e-01 120 chr3R:4454530-4454650 2.68e-01 120 chr2R:12238539-12238659 1.21e-01 120 chr2R:17585672-17585792 3.14e-03 45_[+5(8.89e-06)]_67 chr3L:1238270-1238390 5.25e-03 15_[+3(4.83e-05)]_97 chr2L:1979335-1979455 5.03e-01 120 chr2R:22338483-22338603 2.90e-02 120 chr3L:20386507-20386627 3.07e-01 120 chr3L:1495890-1496010 1.60e-01 120 chrX:18155081-18155201 3.57e-03 111_[+2(9.30e-05)]_1 chr3L:22183707-22183827 6.16e-02 120 chr3L:9697595-9697715 1.82e-02 [+2(7.45e-05)]_112 chr4:92140-92260 6.53e-03 83_[+5(7.10e-05)]_29 chr2R:16849167-16849287 4.01e-01 120 chr3R:9633273-9633393 1.12e-01 59_[+1(2.89e-05)]_53 chr3R:10762059-10762179 1.26e-01 120 chr2R:7495400-7495520 3.65e-01 120 chr3L:5578734-5578854 7.79e-02 120 chr3R:25538443-25538563 4.49e-01 120 chr3L:14396347-14396467 2.60e-03 11_[+4(1.42e-05)]_101 chr3L:10540409-10540529 6.26e-01 120 chr2R:15988605-15988725 4.63e-02 69_[+1(2.89e-05)]_43 chr2R:24538482-24538602 1.05e-01 120 chr3L:13483706-13483826 2.74e-01 120 chr2L:7070319-7070439 2.41e-01 43_[+1(2.89e-05)]_69 chr3R:12992341-12992461 3.26e-02 120 chr4:1191805-1191925 8.69e-02 120 chr2R:11277619-11277739 1.07e-01 69_[+1(2.89e-05)]_43 chrX:1876624-1876744 2.02e-01 120 chr3R:13772443-13772563 1.27e-01 120 chr2R:10460381-10460501 3.73e-03 120 chr3R:11820282-11820402 4.03e-02 43_[+1(2.89e-05)]_69 chr2L:15345846-15345966 3.24e-01 120 chr2L:19567462-19567582 3.97e-01 120 chr2R:10845906-10846026 1.59e-02 69_[+1(2.89e-05)]_43 chr2L:2441796-2441916 6.19e-02 120 chr3R:28901903-28902023 1.92e-01 120 chr3R:11853623-11853743 1.02e-01 43_[+1(2.89e-05)]_69 chr2L:13085359-13085479 1.96e-01 120 chr2R:17624528-17624648 3.89e-01 120 chr3R:10706015-10706135 2.24e-04 25_[+2(5.99e-05)]_13_[+1(2.89e-05)]_\ 4_[+3(3.42e-05)]_54 chrX:12906466-12906586 1.26e-01 120 chr2L:9189030-9189150 1.34e-01 120 chr2L:485266-485386 8.38e-02 120 chrX:9879378-9879498 2.17e-01 120 chr2R:21217614-21217734 3.48e-01 120 chr2R:19987505-19987625 7.43e-03 120 chr2R:6025846-6025966 5.57e-01 120 chrX:7285056-7285176 1.54e-04 69_[+5(8.89e-06)]_43 chr3L:7879106-7879226 8.18e-02 120 chr2L:448864-448984 4.32e-02 120 chr2L:8257982-8258102 4.20e-02 120 chr3R:21760032-21760152 1.75e-01 120 chr2L:7158147-7158267 1.79e-01 120 chr3R:16606049-16606169 3.62e-02 120 chr2L:7521807-7521927 2.88e-02 120 chr3L:20508989-20509109 2.20e-01 120 chr3R:23765696-23765816 4.12e-01 120 chr3R:31343896-31344016 4.19e-03 120 chrX:11425529-11425649 1.28e-05 68_[+3(2.62e-05)]_29_[+2(4.02e-06)]_\ 7 chr2R:19180078-19180198 4.52e-01 120 chr3L:21568440-21568560 1.09e-01 120 chr2L:9335532-9335652 5.04e-02 105_[+4(9.12e-05)]_7 chr2R:7986681-7986801 1.26e-02 120 chr2R:16691912-16692032 6.22e-01 120 chr2R:12596767-12596887 4.45e-01 120 chr4:989197-989317 5.88e-01 120 chr3L:16139852-16139972 6.97e-04 102_[+2(7.45e-05)]_10 chr2R:10282499-10282619 2.97e-05 8_[+3(4.23e-05)]_82_[+3(4.23e-05)]_\ 1_[+2(1.39e-05)]_5 chr3R:9455133-9455253 1.34e-03 4_[+2(9.91e-06)]_108 chr3L:17806765-17806885 3.97e-01 120 chr3R:4470825-4470945 5.23e-02 120 chrX:8520674-8520794 5.29e-02 61_[+2(5.99e-05)]_51 chr3L:14005766-14005886 2.51e-01 120 chr3R:31951293-31951413 1.64e-01 120 chr2L:7820527-7820647 1.08e-02 32_[+2(2.85e-05)]_80 chr2L:9152552-9152672 4.39e-01 120 chrX:21372761-21372881 8.07e-05 96_[+2(5.12e-05)]_16 chr3R:15842353-15842473 8.01e-02 62_[+1(2.89e-05)]_50 chr3L:20001392-20001512 4.69e-02 120 chr2L:7430488-7430608 2.98e-01 120 chr3L:20525901-20526021 9.16e-02 120 chr3L:1192453-1192573 3.33e-01 120 chr3R:4814099-4814219 2.75e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************