******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/PHDP.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:23882458-23882578 1.0000 120 chr3L:9424604-9424724 1.0000 120 chr3L:960728-960848 1.0000 120 chr2L:11736127-11736247 1.0000 120 chr3L:12223127-12223247 1.0000 120 chr2R:8759591-8759711 1.0000 120 chr2R:11426851-11426971 1.0000 120 chrX:3109020-3109140 1.0000 120 chrX:22488396-22488516 1.0000 120 chr3R:24798771-24798891 1.0000 120 chr2L:17558259-17558379 1.0000 120 chr2R:18435152-18435272 1.0000 120 chr2L:14405212-14405332 1.0000 120 chr3R:17966153-17966273 1.0000 120 chr2L:2374073-2374193 1.0000 120 chr3R:21163502-21163622 1.0000 120 chr3L:4603571-4603691 1.0000 120 chr3L:2845365-2845485 1.0000 120 chr3L:12085454-12085574 1.0000 120 chr3R:13441824-13441944 1.0000 120 chr2R:20252197-20252317 1.0000 120 chrX:13817553-13817673 1.0000 120 chr2L:8080833-8080953 1.0000 120 chr3R:6182626-6182746 1.0000 120 chrX:515842-515962 1.0000 120 chr2L:1218221-1218341 1.0000 120 chr3L:7013666-7013786 1.0000 120 chr3L:15275614-15275734 1.0000 120 chr3R:13644802-13644922 1.0000 120 chr2R:17533781-17533901 1.0000 120 chr3L:3544361-3544481 1.0000 120 chr2L:16819801-16819921 1.0000 120 chr3L:10428874-10428994 1.0000 120 chr2L:14252574-14252694 1.0000 120 chr2L:14358860-14358980 1.0000 120 chr3L:9304548-9304668 1.0000 120 chr2L:3397736-3397856 1.0000 120 chrX:10763001-10763121 1.0000 120 chr3R:17955857-17955977 1.0000 120 chr3L:9333880-9334000 1.0000 120 chr3R:12562181-12562301 1.0000 120 chr2L:16451976-16452096 1.0000 120 chr2L:18965731-18965851 1.0000 120 chr2L:20390139-20390259 1.0000 120 chr3R:28904320-28904440 1.0000 120 chrX:13645206-13645326 1.0000 120 chr3R:11173264-11173384 1.0000 120 chr3R:15366979-15367099 1.0000 120 chr3R:21865161-21865281 1.0000 120 chr3R:15983641-15983761 1.0000 120 chr3L:19216550-19216670 1.0000 120 chr3L:13356168-13356288 1.0000 120 chrX:14727721-14727841 1.0000 120 chr2R:7241731-7241851 1.0000 120 chr3L:17625152-17625272 1.0000 120 chr3R:13446708-13446828 1.0000 120 chr3R:25275531-25275651 1.0000 120 chr3L:3382009-3382129 1.0000 120 chr2L:7150891-7151011 1.0000 120 chr2R:12727652-12727772 1.0000 120 chr3R:17007509-17007629 1.0000 120 chr3L:11580071-11580191 1.0000 120 chrX:9350428-9350548 1.0000 120 chr2L:7492042-7492162 1.0000 120 chr3L:22276766-22276886 1.0000 120 chrX:14679287-14679407 1.0000 120 chr3R:30134832-30134952 1.0000 120 chr3L:12275866-12275986 1.0000 120 chr3L:7811033-7811153 1.0000 120 chr3R:21594493-21594613 1.0000 120 chr2R:15155077-15155197 1.0000 120 chr3L:10818407-10818527 1.0000 120 chrX:19348977-19349097 1.0000 120 chrX:17696789-17696909 1.0000 120 chr3R:18785913-18786033 1.0000 120 chr3L:13903394-13903514 1.0000 120 chr2R:15471982-15472102 1.0000 120 chr2R:11602027-11602147 1.0000 120 chrX:8206073-8206193 1.0000 120 chrX:11885469-11885589 1.0000 120 chr3R:19151961-19152081 1.0000 120 chr3R:11852064-11852184 1.0000 120 chr3L:11450634-11450754 1.0000 120 chr3R:11809791-11809911 1.0000 120 chr3L:19263547-19263667 1.0000 120 chr2L:1428482-1428602 1.0000 120 chr2L:3507550-3507670 1.0000 120 chr3L:19074038-19074158 1.0000 120 chr2R:21709653-21709773 1.0000 120 chr2R:12547681-12547801 1.0000 120 chr2R:8734639-8734759 1.0000 120 chr3L:110118-110238 1.0000 120 chr3R:23969561-23969681 1.0000 120 chrX:13109844-13109964 1.0000 120 chr2L:10760707-10760827 1.0000 120 chr3R:26117756-26117876 1.0000 120 chr3L:20406416-20406536 1.0000 120 chr2L:10543526-10543646 1.0000 120 chr3L:8018725-8018845 1.0000 120 chr3R:25445661-25445781 1.0000 120 chr3R:12406296-12406416 1.0000 120 chr3R:23284390-23284510 1.0000 120 chr3L:18179974-18180094 1.0000 120 chr2L:11199232-11199352 1.0000 120 chr3R:10688981-10689101 1.0000 120 chr2R:6220006-6220126 1.0000 120 chr4:1199365-1199485 1.0000 120 chrX:14840649-14840769 1.0000 120 chr3L:9066199-9066319 1.0000 120 chr2L:16869088-16869208 1.0000 120 chr3L:22471745-22471865 1.0000 120 chr3R:29690579-29690699 1.0000 120 chrX:9120991-9121111 1.0000 120 chr3L:7782355-7782475 1.0000 120 chr3L:21065357-21065477 1.0000 120 chr3R:12985845-12985965 1.0000 120 chr3L:3932920-3933040 1.0000 120 chr2R:12644270-12644390 1.0000 120 chrX:19352951-19353071 1.0000 120 chr3L:3437327-3437447 1.0000 120 chrX:9352841-9352961 1.0000 120 chrX:15591935-15592055 1.0000 120 chr2R:18289154-18289274 1.0000 120 chrX:12937936-12938056 1.0000 120 chr3R:5393840-5393960 1.0000 120 chr2R:13474931-13475051 1.0000 120 chr2R:13923471-13923591 1.0000 120 chr3L:3305566-3305686 1.0000 120 chr3R:17655166-17655286 1.0000 120 chr3R:18242181-18242301 1.0000 120 chr3L:6189167-6189287 1.0000 120 chr3R:26014373-26014493 1.0000 120 chr2L:14441013-14441133 1.0000 120 chr2L:1094829-1094949 1.0000 120 chr2L:12542167-12542287 1.0000 120 chr2R:9309615-9309735 1.0000 120 chrX:9664572-9664692 1.0000 120 chrX:16944139-16944259 1.0000 120 chr3L:12270018-12270138 1.0000 120 chrX:10573647-10573767 1.0000 120 chr3L:5182397-5182517 1.0000 120 chr3R:18393601-18393721 1.0000 120 chr3L:3760723-3760843 1.0000 120 chr3R:5636884-5637004 1.0000 120 chr2R:19389446-19389566 1.0000 120 chr2L:9564629-9564749 1.0000 120 chrX:3714158-3714278 1.0000 120 chr2R:16202915-16203035 1.0000 120 chr3L:9691292-9691412 1.0000 120 chr3L:3873189-3873309 1.0000 120 chr3R:8867856-8867976 1.0000 120 chr3L:4522024-4522144 1.0000 120 chrX:13679738-13679858 1.0000 120 chr2L:7395898-7396018 1.0000 120 chrX:12225461-12225581 1.0000 120 chr2L:9235584-9235704 1.0000 120 chr3R:28677004-28677124 1.0000 120 chr3R:8354532-8354652 1.0000 120 chr2R:18398305-18398425 1.0000 120 chr3R:23722105-23722225 1.0000 120 chr2L:827584-827704 1.0000 120 chr2R:18691522-18691642 1.0000 120 chr2R:22677925-22678045 1.0000 120 chr2L:3003522-3003642 1.0000 120 chr2R:20257442-20257562 1.0000 120 chrX:16834382-16834502 1.0000 120 chr3R:17115791-17115911 1.0000 120 chr3L:18402686-18402806 1.0000 120 chr3R:28570931-28571051 1.0000 120 chr2L:10428642-10428762 1.0000 120 chr3L:11291555-11291675 1.0000 120 chr3L:17047871-17047991 1.0000 120 chr2L:1207572-1207692 1.0000 120 chr2R:19860396-19860516 1.0000 120 chr2L:21370982-21371102 1.0000 120 chr2R:18171968-18172088 1.0000 120 chr3L:15592657-15592777 1.0000 120 chr2L:6283402-6283522 1.0000 120 chr2R:14576037-14576157 1.0000 120 chr2L:868436-868556 1.0000 120 chr3R:21161797-21161917 1.0000 120 chr3L:18114077-18114197 1.0000 120 chr2R:18397651-18397771 1.0000 120 chrX:16854843-16854963 1.0000 120 chr3R:21246576-21246696 1.0000 120 chr3L:3450626-3450746 1.0000 120 chr2R:14357269-14357389 1.0000 120 chr3L:3983518-3983638 1.0000 120 chrX:8542120-8542240 1.0000 120 chrX:10582201-10582321 1.0000 120 chr3L:15999798-15999918 1.0000 120 chr2L:5876621-5876741 1.0000 120 chr2L:8350705-8350825 1.0000 120 chr3L:5926088-5926208 1.0000 120 chr2L:1628290-1628410 1.0000 120 chr3L:16131631-16131751 1.0000 120 chr2L:11331793-11331913 1.0000 120 chr3L:11258556-11258676 1.0000 120 chr3L:10767284-10767404 1.0000 120 chr3R:19848008-19848128 1.0000 120 chr2L:7519014-7519134 1.0000 120 chr2R:11435206-11435326 1.0000 120 chr3R:10140380-10140500 1.0000 120 chrX:8445069-8445189 1.0000 120 chr3L:16045404-16045524 1.0000 120 chr2L:6461656-6461776 1.0000 120 chr2R:17848878-17848998 1.0000 120 chr3R:8673944-8674064 1.0000 120 chr2R:24943229-24943349 1.0000 120 chr3L:14190124-14190244 1.0000 120 chr2L:18377256-18377376 1.0000 120 chr2L:20807712-20807832 1.0000 120 chr2L:14245591-14245711 1.0000 120 chrX:10561528-10561648 1.0000 120 chr3R:21112578-21112698 1.0000 120 chr3R:6368717-6368837 1.0000 120 chr2L:16251958-16252078 1.0000 120 chr2L:5798131-5798251 1.0000 120 chr3R:8955057-8955177 1.0000 120 chr3L:9508804-9508924 1.0000 120 chr3L:3770959-3771079 1.0000 120 chr2R:17160973-17161093 1.0000 120 chr2R:7249105-7249225 1.0000 120 chr3R:25293013-25293133 1.0000 120 chrX:17737993-17738113 1.0000 120 chr3L:8629022-8629142 1.0000 120 chr3L:20448095-20448215 1.0000 120 chrX:15384121-15384241 1.0000 120 chr2R:16832966-16833086 1.0000 120 chr2L:8982703-8982823 1.0000 120 chr3L:13905689-13905809 1.0000 120 chrX:8573969-8574089 1.0000 120 chr2L:16275841-16275961 1.0000 120 chr2R:18693238-18693358 1.0000 120 chr2L:6668033-6668153 1.0000 120 chr2L:9387451-9387571 1.0000 120 chr3R:11661890-11662010 1.0000 120 chr3R:20834986-20835106 1.0000 120 chr3L:8951113-8951233 1.0000 120 chr3R:10520643-10520763 1.0000 120 chr2L:20715198-20715318 1.0000 120 chr2L:2905188-2905308 1.0000 120 chr3R:22589560-22589680 1.0000 120 chr3R:24010972-24011092 1.0000 120 chrX:11108296-11108416 1.0000 120 chr3R:9370525-9370645 1.0000 120 chr3R:14729335-14729455 1.0000 120 chr3R:20259530-20259650 1.0000 120 chrX:15297075-15297195 1.0000 120 chr2L:19003026-19003146 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_PHDP/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/PHDP.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.356 C 0.145 G 0.145 T 0.355 Background letter frequencies (from file dataset with add-one prior applied): A 0.356 C 0.145 G 0.145 T 0.355 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGCGGCVM MEME-1 width = 8 sites = 17 llr = 172 E-value = 3.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGGCVM MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::113:44 pos.-specific C 1:9::a34 probability G 9a:77:42 matrix T :::2:::: bits 2.8 * * 2.5 ** * 2.2 *** * 2.0 *** * Relative 1.7 *** * Entropy 1.4 ****** (14.6 bits) 1.1 ****** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GGCGGCAA consensus TA GC sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCVM MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14357269-14357389 102 1.95e-07 TCGGTATTTC GGCGGCGC CACTTTCTTA chr2R:7249105-7249225 12 1.55e-06 GGAATTCTCA GGCGGCGG AGAGCGCGGC chr3L:8018725-8018845 83 1.55e-06 GTTACTTCAT GGCGGCGA TAAGatagaa chr2R:21709653-21709773 7 1.55e-06 TCTTCC GGCGGCAC AGTGAACGCT chr3R:25293013-25293133 90 4.36e-06 tGGAATCTAT GGCGGCAA TGAAACCGGT chr3L:3932920-3933040 23 5.32e-06 AATGTACCTT GGCGACCC TGACAGGCGA chr3L:9333880-9334000 66 9.02e-06 TCCCCAAGAG GGCGACAC TTGGAGTTCA chr2L:9387451-9387571 81 1.35e-05 TATAGATAAG GGCGACCA TATGTAGCTA chr3R:17655166-17655286 27 1.35e-05 AACATTCGCA GGCGACCA ACACACCAAC chr3R:5393840-5393960 105 1.35e-05 TTGTTGCTGT GGCTGCGG TCACACTG chr2L:6283402-6283522 49 1.47e-05 ACCATTCGGT CGCGGCAC CCGAAAATCA chrX:11108296-11108416 102 1.63e-05 TCCCCCATAT GGCTGCCG ATAATATTCG chr3R:10140380-10140500 6 1.70e-05 ACAGT CGCGGCCA AGGAGATAAC chr3R:13441824-13441944 6 2.25e-05 GGTCT GGAGGCGC CATAAAGATT chr3L:22276766-22276886 60 2.87e-05 TTGGGAACGG GGCTGCAA AATCAATAAG chr2R:16202915-16203035 94 3.58e-05 GCTAAAAGTT GGCAGCAC GGCCAGGGGA chr2R:16832966-16833086 53 4.72e-05 ACGAATATAT GGCTACGA TATATGGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCVM MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14357269-14357389 2e-07 101_[+1]_11 chr2R:7249105-7249225 1.5e-06 11_[+1]_101 chr3L:8018725-8018845 1.5e-06 82_[+1]_30 chr2R:21709653-21709773 1.5e-06 6_[+1]_106 chr3R:25293013-25293133 4.4e-06 89_[+1]_23 chr3L:3932920-3933040 5.3e-06 22_[+1]_90 chr3L:9333880-9334000 9e-06 65_[+1]_47 chr2L:9387451-9387571 1.4e-05 80_[+1]_32 chr3R:17655166-17655286 1.4e-05 26_[+1]_86 chr3R:5393840-5393960 1.4e-05 104_[+1]_8 chr2L:6283402-6283522 1.5e-05 48_[+1]_64 chrX:11108296-11108416 1.6e-05 101_[+1]_11 chr3R:10140380-10140500 1.7e-05 5_[+1]_107 chr3R:13441824-13441944 2.2e-05 5_[+1]_107 chr3L:22276766-22276886 2.9e-05 59_[+1]_53 chr2R:16202915-16203035 3.6e-05 93_[+1]_19 chr2R:16832966-16833086 4.7e-05 52_[+1]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCVM MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGGCVM width=8 seqs=17 chr2R:14357269-14357389 ( 102) GGCGGCGC 1 chr2R:7249105-7249225 ( 12) GGCGGCGG 1 chr3L:8018725-8018845 ( 83) GGCGGCGA 1 chr2R:21709653-21709773 ( 7) GGCGGCAC 1 chr3R:25293013-25293133 ( 90) GGCGGCAA 1 chr3L:3932920-3933040 ( 23) GGCGACCC 1 chr3L:9333880-9334000 ( 66) GGCGACAC 1 chr2L:9387451-9387571 ( 81) GGCGACCA 1 chr3R:17655166-17655286 ( 27) GGCGACCA 1 chr3R:5393840-5393960 ( 105) GGCTGCGG 1 chr2L:6283402-6283522 ( 49) CGCGGCAC 1 chrX:11108296-11108416 ( 102) GGCTGCCG 1 chr3R:10140380-10140500 ( 6) CGCGGCCA 1 chr3R:13441824-13441944 ( 6) GGAGGCGC 1 chr3L:22276766-22276886 ( 60) GGCTGCAA 1 chr2R:16202915-16203035 ( 94) GGCAGCAC 1 chr2R:16832966-16833086 ( 53) GGCTACGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCVM MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4638 E= 3.2e+000 -1073 -30 261 -1073 -1073 -1073 279 -1073 -259 270 -1073 -1073 -259 -1073 228 -59 -27 -1073 228 -1073 -1073 279 -1073 -1073 -1 102 128 -1073 21 151 28 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCVM MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 3.2e+000 0.000000 0.117647 0.882353 0.000000 0.000000 0.000000 1.000000 0.000000 0.058824 0.941176 0.000000 0.000000 0.058824 0.000000 0.705882 0.235294 0.294118 0.000000 0.705882 0.000000 0.000000 1.000000 0.000000 0.000000 0.352941 0.294118 0.352941 0.000000 0.411765 0.411765 0.176471 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCVM MEME-1 regular expression -------------------------------------------------------------------------------- GGC[GT][GA]C[AGC][AC] -------------------------------------------------------------------------------- Time 7.55 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCGVTGG MEME-2 width = 8 sites = 9 llr = 100 E-value = 6.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGVTGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::3::: pos.-specific C 2:8:3::: probability G 2a2a3:aa matrix T 6::::a:: bits 2.8 * * ** 2.5 * * ** 2.2 * * ** 2.0 *** ** Relative 1.7 *** ** Entropy 1.4 *** *** (16.1 bits) 1.1 *** *** 0.8 ******* 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TGCGATGG consensus C G C sequence G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGVTGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6668033-6668153 51 4.26e-06 GCTAGTGATG CGCGGTGG TCGATAAGAC chr3R:25293013-25293133 26 4.26e-06 TTGTTAGCTT TGCGCTGG CTTATCAGCT chr2L:20807712-20807832 15 4.26e-06 AAGTTTCACT TGCGCTGG TTTATTTATT chr2R:19389446-19389566 113 4.26e-06 GCAATTTGGT TGCGGTGG chr2L:7150891-7151011 6 4.26e-06 ACAGA TGCGGTGG GCATACTAGC chr3L:17047871-17047991 49 9.48e-06 GTTGCTCTGG CGCGATGG CATCGGTTTA chr3R:6182626-6182746 59 9.48e-06 GCGTGTGAGT GGCGATGG GCTTTAGTGT chrX:515842-515962 39 1.37e-05 ACTGGTTTTA TGGGCTGG ATGCAAAAGC chr2R:16202915-16203035 107 1.90e-05 AGCACGGCCA GGGGATGG TCGCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGVTGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6668033-6668153 4.3e-06 50_[+2]_62 chr3R:25293013-25293133 4.3e-06 25_[+2]_87 chr2L:20807712-20807832 4.3e-06 14_[+2]_98 chr2R:19389446-19389566 4.3e-06 112_[+2] chr2L:7150891-7151011 4.3e-06 5_[+2]_107 chr3L:17047871-17047991 9.5e-06 48_[+2]_64 chr3R:6182626-6182746 9.5e-06 58_[+2]_54 chrX:515842-515962 1.4e-05 38_[+2]_74 chr2R:16202915-16203035 1.9e-05 106_[+2]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGVTGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGVTGG width=8 seqs=9 chr2L:6668033-6668153 ( 51) CGCGGTGG 1 chr3R:25293013-25293133 ( 26) TGCGCTGG 1 chr2L:20807712-20807832 ( 15) TGCGCTGG 1 chr2R:19389446-19389566 ( 113) TGCGGTGG 1 chr2L:7150891-7151011 ( 6) TGCGGTGG 1 chr3L:17047871-17047991 ( 49) CGCGATGG 1 chr3R:6182626-6182746 ( 59) GGCGATGG 1 chrX:515842-515962 ( 39) TGGGCTGG 1 chr2R:16202915-16203035 ( 107) GGGGATGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGVTGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4638 E= 6.5e+003 -982 62 62 65 -982 -982 279 -982 -982 242 62 -982 -982 -982 279 -982 -9 120 120 -982 -982 -982 -982 149 -982 -982 279 -982 -982 -982 279 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGVTGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 6.5e+003 0.000000 0.222222 0.222222 0.555556 0.000000 0.000000 1.000000 0.000000 0.000000 0.777778 0.222222 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.333333 0.333333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGVTGG MEME-2 regular expression -------------------------------------------------------------------------------- [TCG]G[CG]G[ACG]TGG -------------------------------------------------------------------------------- Time 13.86 secs. ******************************************************************************** ******************************************************************************** MOTIF ACSCACYG MEME-3 width = 8 sites = 12 llr = 123 E-value = 7.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACSCACYG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 8:::a::: pos.-specific C :94a:841 probability G 216::229 matrix T ::::::4: bits 2.8 * 2.5 * * * 2.2 * * * * 2.0 * * * * Relative 1.7 *** * * Entropy 1.4 ***** * (14.8 bits) 1.1 ****** * 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel ACGCACCG consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACSCACYG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:25275531-25275651 112 1.18e-06 TATAACTCAT ACGCACCG T chr2L:6461656-6461776 42 6.90e-06 CATTTATTTC ACGCACTG TCGGGCGAAA chr2L:1094829-1094949 32 6.90e-06 GAGCAGACGC ACGCACTG TTTGCACTGT chr2R:13474931-13475051 24 6.90e-06 AACAAACGAC ACGCACTG CAGGGCAAGA chr2R:8759591-8759711 111 6.90e-06 TACTTTTCAA ACGCACTG TA chr2L:16275841-16275961 107 7.38e-06 ATTGGACACC GCCCACCG GTGTAG chr2R:14357269-14357389 56 1.14e-05 GACAATCGGG ACCCACGG CACGTCGATA chr2L:16451976-16452096 52 1.14e-05 TATCGATGAA ACCCACTG ATACAAGCCA chr2L:11736127-11736247 85 1.71e-05 ATAAAAGATA ACCCAGCG ATAAGCCACC chr3R:13644802-13644922 8 2.40e-05 AACCAAA ACGCAGGG GAGCAAACAA chr2R:16832966-16833086 108 2.68e-05 TTATATAGCG ACCCACCC GACAA chr2L:868436-868556 33 3.19e-05 CTACACTAGC GGGCACCG CAATAGAATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACSCACYG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:25275531-25275651 1.2e-06 111_[+3]_1 chr2L:6461656-6461776 6.9e-06 41_[+3]_71 chr2L:1094829-1094949 6.9e-06 31_[+3]_81 chr2R:13474931-13475051 6.9e-06 23_[+3]_89 chr2R:8759591-8759711 6.9e-06 110_[+3]_2 chr2L:16275841-16275961 7.4e-06 106_[+3]_6 chr2R:14357269-14357389 1.1e-05 55_[+3]_57 chr2L:16451976-16452096 1.1e-05 51_[+3]_61 chr2L:11736127-11736247 1.7e-05 84_[+3]_28 chr3R:13644802-13644922 2.4e-05 7_[+3]_105 chr2R:16832966-16833086 2.7e-05 107_[+3]_5 chr2L:868436-868556 3.2e-05 32_[+3]_80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACSCACYG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACSCACYG width=8 seqs=12 chr3R:25275531-25275651 ( 112) ACGCACCG 1 chr2L:6461656-6461776 ( 42) ACGCACTG 1 chr2L:1094829-1094949 ( 32) ACGCACTG 1 chr2R:13474931-13475051 ( 24) ACGCACTG 1 chr2R:8759591-8759711 ( 111) ACGCACTG 1 chr2L:16275841-16275961 ( 107) GCCCACCG 1 chr2R:14357269-14357389 ( 56) ACCCACGG 1 chr2L:16451976-16452096 ( 52) ACCCACTG 1 chr2L:11736127-11736247 ( 85) ACCCAGCG 1 chr3R:13644802-13644922 ( 8) ACGCAGGG 1 chr2R:16832966-16833086 ( 108) ACCCACCC 1 chr2L:868436-868556 ( 33) GGGCACCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACSCACYG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 7.2e+003 123 -1023 20 -1023 -1023 266 -80 -1023 -1023 152 201 -1023 -1023 279 -1023 -1023 149 -1023 -1023 -1023 -1023 252 20 -1023 -1023 152 20 23 -1023 -80 266 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACSCACYG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 7.2e+003 0.833333 0.000000 0.166667 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.416667 0.583333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.416667 0.166667 0.416667 0.000000 0.083333 0.916667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACSCACYG MEME-3 regular expression -------------------------------------------------------------------------------- AC[GC]CAC[CT]G -------------------------------------------------------------------------------- Time 20.16 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCCCCCC MEME-4 width = 8 sites = 2 llr = 29 E-value = 2.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCCCCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::aaaaaa probability G :a:::::: matrix T a::::::: bits 2.8 ******* 2.5 ******* 2.2 ******* 2.0 ******* Relative 1.7 ******* Entropy 1.4 ******** (21.0 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TGCCCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCCCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:1094829-1094949 51 4.78e-07 TTGCACTGTT TGCCCCCC CTCCTCCCCC chrX:11885469-11885589 32 4.78e-07 ATTAAGTCTA TGCCCCCC AAGAATATAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCCCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1094829-1094949 4.8e-07 50_[+4]_62 chrX:11885469-11885589 4.8e-07 31_[+4]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCCCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCCCCCC width=8 seqs=2 chr2L:1094829-1094949 ( 51) TGCCCCCC 1 chrX:11885469-11885589 ( 32) TGCCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCCCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.5e+004 -765 -765 -765 149 -765 -765 278 -765 -765 278 -765 -765 -765 278 -765 -765 -765 278 -765 -765 -765 278 -765 -765 -765 278 -765 -765 -765 278 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCCCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.5e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCCCCC MEME-4 regular expression -------------------------------------------------------------------------------- TGCCCCCC -------------------------------------------------------------------------------- Time 26.41 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCCCTC MEME-5 width = 8 sites = 2 llr = 29 E-value = 2.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCCCTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aaaaaa:a probability G :::::::: matrix T ::::::a: bits 2.8 ****** * 2.5 ****** * 2.2 ****** * 2.0 ****** * Relative 1.7 ****** * Entropy 1.4 ******** (21.0 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCCCCCTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:11258556-11258676 1 4.78e-07 . CCCCCCTC TCACGCTGTT chr2L:1094829-1094949 64 4.78e-07 CCCCCCTCCT CCCCCCTC CTCCCACCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:11258556-11258676 4.8e-07 [+5]_112 chr2L:1094829-1094949 4.8e-07 63_[+5]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCCCTC width=8 seqs=2 chr3L:11258556-11258676 ( 1) CCCCCCTC 1 chr2L:1094829-1094949 ( 64) CCCCCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.5e+004 -765 278 -765 -765 -765 278 -765 -765 -765 278 -765 -765 -765 278 -765 -765 -765 278 -765 -765 -765 278 -765 -765 -765 -765 -765 149 -765 278 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.5e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCTC MEME-5 regular expression -------------------------------------------------------------------------------- CCCCCCTC -------------------------------------------------------------------------------- Time 32.66 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23882458-23882578 7.03e-01 120 chr3L:9424604-9424724 7.67e-02 120 chr3L:960728-960848 2.65e-01 120 chr2L:11736127-11736247 2.15e-03 84_[+3(1.71e-05)]_3_[+3(2.68e-05)]_\ 17 chr3L:12223127-12223247 9.26e-01 120 chr2R:8759591-8759711 5.45e-02 110_[+3(6.90e-06)]_2 chr2R:11426851-11426971 5.55e-01 120 chrX:3109020-3109140 6.00e-01 120 chrX:22488396-22488516 1.90e-02 29_[+4(2.11e-05)]_83 chr3R:24798771-24798891 6.86e-01 120 chr2L:17558259-17558379 7.95e-01 120 chr2R:18435152-18435272 9.95e-01 120 chr2L:14405212-14405332 4.90e-01 120 chr3R:17966153-17966273 4.33e-01 120 chr2L:2374073-2374193 9.99e-01 120 chr3R:21163502-21163622 1.82e-01 120 chr3L:4603571-4603691 1.00e+00 120 chr3L:2845365-2845485 2.03e-01 120 chr3L:12085454-12085574 1.00e+00 120 chr3R:13441824-13441944 1.31e-03 5_[+1(2.25e-05)]_107 chr2R:20252197-20252317 1.45e-01 120 chrX:13817553-13817673 3.19e-01 120 chr2L:8080833-8080953 6.61e-01 120 chr3R:6182626-6182746 1.49e-02 58_[+2(9.48e-06)]_54 chrX:515842-515962 1.34e-02 38_[+2(1.37e-05)]_74 chr2L:1218221-1218341 3.24e-01 120 chr3L:7013666-7013786 1.89e-01 120 chr3L:15275614-15275734 9.61e-01 120 chr3R:13644802-13644922 3.51e-02 7_[+3(2.40e-05)]_105 chr2R:17533781-17533901 8.40e-01 120 chr3L:3544361-3544481 1.00e+00 120 chr2L:16819801-16819921 9.35e-01 120 chr3L:10428874-10428994 8.91e-01 120 chr2L:14252574-14252694 9.78e-01 120 chr2L:14358860-14358980 5.79e-01 120 chr3L:9304548-9304668 9.73e-03 29_[+3(6.37e-05)]_83 chr2L:3397736-3397856 3.52e-02 120 chrX:10763001-10763121 9.95e-01 120 chr3R:17955857-17955977 6.85e-01 120 chr3L:9333880-9334000 3.88e-02 65_[+1(9.02e-06)]_47 chr3R:12562181-12562301 9.92e-01 120 chr2L:16451976-16452096 1.06e-02 51_[+3(1.14e-05)]_61 chr2L:18965731-18965851 7.34e-01 120 chr2L:20390139-20390259 1.88e-02 120 chr3R:28904320-28904440 9.57e-01 120 chrX:13645206-13645326 8.99e-01 120 chr3R:11173264-11173384 7.90e-01 120 chr3R:15366979-15367099 1.00e+00 120 chr3R:21865161-21865281 8.39e-01 120 chr3R:15983641-15983761 7.08e-01 120 chr3L:19216550-19216670 9.94e-01 120 chr3L:13356168-13356288 5.99e-01 120 chrX:14727721-14727841 5.71e-01 120 chr2R:7241731-7241851 9.98e-01 120 chr3L:17625152-17625272 4.99e-01 120 chr3R:13446708-13446828 1.00e+00 120 chr3R:25275531-25275651 8.07e-05 92_[+4(5.71e-05)]_11_[+3(1.18e-06)]_\ 1 chr3L:3382009-3382129 7.39e-01 120 chr2L:7150891-7151011 4.42e-02 5_[+2(4.26e-06)]_107 chr2R:12727652-12727772 6.54e-01 120 chr3R:17007509-17007629 5.16e-01 120 chr3L:11580071-11580191 7.82e-01 120 chrX:9350428-9350548 9.98e-01 120 chr2L:7492042-7492162 2.35e-01 120 chr3L:22276766-22276886 5.86e-03 59_[+1(2.87e-05)]_53 chrX:14679287-14679407 9.86e-01 120 chr3R:30134832-30134952 9.32e-01 120 chr3L:12275866-12275986 9.68e-01 120 chr3L:7811033-7811153 1.00e+00 120 chr3R:21594493-21594613 8.86e-01 120 chr2R:15155077-15155197 9.94e-01 120 chr3L:10818407-10818527 5.56e-01 120 chrX:19348977-19349097 9.44e-01 120 chrX:17696789-17696909 6.79e-01 120 chr3R:18785913-18786033 7.84e-01 120 chr3L:13903394-13903514 5.79e-01 120 chr2R:15471982-15472102 9.39e-01 120 chr2R:11602027-11602147 7.96e-01 120 chrX:8206073-8206193 1.00e+00 120 chrX:11885469-11885589 4.25e-05 31_[+4(4.78e-07)]_81 chr3R:19151961-19152081 6.77e-01 120 chr3R:11852064-11852184 4.90e-01 120 chr3L:11450634-11450754 1.00e+00 120 chr3R:11809791-11809911 1.95e-01 120 chr3L:19263547-19263667 9.94e-01 120 chr2L:1428482-1428602 7.95e-01 120 chr2L:3507550-3507670 9.96e-01 120 chr3L:19074038-19074158 9.77e-01 120 chr2R:21709653-21709773 1.77e-03 6_[+1(1.55e-06)]_106 chr2R:12547681-12547801 4.31e-01 120 chr2R:8734639-8734759 4.12e-02 120 chr3L:110118-110238 3.16e-01 120 chr3R:23969561-23969681 9.38e-01 120 chrX:13109844-13109964 1.00e+00 120 chr2L:10760707-10760827 1.00e+00 120 chr3R:26117756-26117876 1.91e-01 120 chr3L:20406416-20406536 6.51e-01 120 chr2L:10543526-10543646 9.52e-01 120 chr3L:8018725-8018845 3.42e-03 82_[+1(1.55e-06)]_30 chr3R:25445661-25445781 9.98e-01 120 chr3R:12406296-12406416 6.89e-01 120 chr3R:23284390-23284510 8.60e-02 120 chr3L:18179974-18180094 3.62e-01 120 chr2L:11199232-11199352 7.49e-01 120 chr3R:10688981-10689101 9.96e-01 120 chr2R:6220006-6220126 4.46e-01 120 chr4:1199365-1199485 9.71e-01 120 chrX:14840649-14840769 1.00e+00 120 chr3L:9066199-9066319 9.82e-01 120 chr2L:16869088-16869208 7.09e-01 120 chr3L:22471745-22471865 9.54e-03 12_[+3(8.80e-05)]_53_[+2(6.04e-05)]_\ 39 chr3R:29690579-29690699 9.26e-01 120 chrX:9120991-9121111 6.92e-02 120 chr3L:7782355-7782475 8.14e-01 120 chr3L:21065357-21065477 1.85e-02 120 chr3R:12985845-12985965 1.00e+00 120 chr3L:3932920-3933040 2.88e-03 22_[+1(5.32e-06)]_90 chr2R:12644270-12644390 4.27e-01 120 chrX:19352951-19353071 1.53e-01 120 chr3L:3437327-3437447 8.68e-01 120 chrX:9352841-9352961 8.55e-01 120 chrX:15591935-15592055 9.49e-01 120 chr2R:18289154-18289274 5.95e-02 120 chrX:12937936-12938056 1.00e+00 120 chr3R:5393840-5393960 6.81e-03 104_[+1(1.35e-05)]_8 chr2R:13474931-13475051 7.72e-03 23_[+3(6.90e-06)]_89 chr2R:13923471-13923591 9.99e-01 120 chr3L:3305566-3305686 2.58e-01 120 chr3R:17655166-17655286 6.80e-04 26_[+1(1.35e-05)]_68_[+3(7.40e-05)]_\ 10 chr3R:18242181-18242301 1.00e+00 120 chr3L:6189167-6189287 1.29e-01 13_[+2(6.04e-05)]_99 chr3R:26014373-26014493 9.13e-01 120 chr2L:14441013-14441133 9.92e-01 120 chr2L:1094829-1094949 2.12e-09 31_[+3(6.90e-06)]_11_[+4(4.78e-07)]_\ 5_[+5(4.78e-07)]_2_[+5(5.71e-05)]_39 chr2L:12542167-12542287 1.00e+00 120 chr2R:9309615-9309735 1.30e-01 120 chrX:9664572-9664692 7.73e-01 120 chrX:16944139-16944259 4.56e-01 120 chr3L:12270018-12270138 5.05e-01 120 chrX:10573647-10573767 9.64e-01 120 chr3L:5182397-5182517 1.00e+00 120 chr3R:18393601-18393721 9.97e-01 120 chr3L:3760723-3760843 2.56e-01 120 chr3R:5636884-5637004 7.31e-01 120 chr2R:19389446-19389566 1.70e-04 112_[+2(4.26e-06)] chr2L:9564629-9564749 8.43e-01 120 chrX:3714158-3714278 2.01e-02 120 chr2R:16202915-16203035 2.02e-04 93_[+1(3.58e-05)]_5_[+2(1.90e-05)]_\ 6 chr3L:9691292-9691412 9.82e-01 120 chr3L:3873189-3873309 9.17e-01 120 chr3R:8867856-8867976 1.00e+00 120 chr3L:4522024-4522144 2.51e-01 120 chrX:13679738-13679858 6.20e-01 120 chr2L:7395898-7396018 9.94e-01 120 chrX:12225461-12225581 3.53e-01 120 chr2L:9235584-9235704 9.17e-01 120 chr3R:28677004-28677124 5.63e-03 104_[+4(5.71e-05)]_8 chr3R:8354532-8354652 7.63e-01 120 chr2R:18398305-18398425 5.52e-01 120 chr3R:23722105-23722225 1.02e-01 120 chr2L:827584-827704 8.42e-01 120 chr2R:18691522-18691642 1.00e+00 120 chr2R:22677925-22678045 1.00e+00 120 chr2L:3003522-3003642 9.65e-01 120 chr2R:20257442-20257562 9.98e-01 120 chrX:16834382-16834502 9.64e-01 120 chr3R:17115791-17115911 3.73e-01 120 chr3L:18402686-18402806 9.77e-01 120 chr3R:28570931-28571051 9.16e-02 120 chr2L:10428642-10428762 4.94e-01 120 chr3L:11291555-11291675 1.95e-01 120 chr3L:17047871-17047991 3.48e-02 48_[+2(9.48e-06)]_64 chr2L:1207572-1207692 9.40e-01 120 chr2R:19860396-19860516 8.83e-01 120 chr2L:21370982-21371102 3.64e-01 120 chr2R:18171968-18172088 7.20e-01 120 chr3L:15592657-15592777 1.00e+00 120 chr2L:6283402-6283522 6.78e-03 48_[+1(1.47e-05)]_64 chr2R:14576037-14576157 8.50e-01 120 chr2L:868436-868556 8.11e-03 32_[+3(3.19e-05)]_80 chr3R:21161797-21161917 2.18e-01 120 chr3L:18114077-18114197 9.94e-01 120 chr2R:18397651-18397771 2.89e-01 120 chrX:16854843-16854963 8.40e-01 120 chr3R:21246576-21246696 1.72e-01 120 chr3L:3450626-3450746 1.25e-01 120 chr2R:14357269-14357389 3.22e-07 55_[+3(1.14e-05)]_38_[+1(1.95e-07)]_\ 11 chr3L:3983518-3983638 2.69e-01 120 chrX:8542120-8542240 3.60e-01 120 chrX:10582201-10582321 4.92e-01 120 chr3L:15999798-15999918 9.90e-01 120 chr2L:5876621-5876741 1.45e-01 120 chr2L:8350705-8350825 4.54e-01 120 chr3L:5926088-5926208 1.46e-01 120 chr2L:1628290-1628410 9.90e-01 120 chr3L:16131631-16131751 9.48e-02 120 chr2L:11331793-11331913 9.94e-01 120 chr3L:11258556-11258676 9.50e-04 [+5(4.78e-07)]_112 chr3L:10767284-10767404 1.00e+00 120 chr3R:19848008-19848128 1.82e-01 120 chr2L:7519014-7519134 2.84e-06 60_[+4(2.11e-05)]_52 chr2R:11435206-11435326 7.57e-01 120 chr3R:10140380-10140500 2.80e-03 5_[+1(1.70e-05)]_107 chrX:8445069-8445189 6.93e-01 120 chr3L:16045404-16045524 2.95e-01 120 chr2L:6461656-6461776 2.31e-03 41_[+3(6.90e-06)]_71 chr2R:17848878-17848998 8.34e-01 120 chr3R:8673944-8674064 8.15e-01 120 chr2R:24943229-24943349 4.63e-01 120 chr3L:14190124-14190244 1.00e+00 120 chr2L:18377256-18377376 9.07e-01 120 chr2L:20807712-20807832 1.12e-03 14_[+2(4.26e-06)]_98 chr2L:14245591-14245711 3.92e-01 120 chrX:10561528-10561648 9.13e-01 120 chr3R:21112578-21112698 9.63e-02 120 chr3R:6368717-6368837 9.87e-02 65_[+2(6.04e-05)]_47 chr2L:16251958-16252078 5.37e-01 120 chr2L:5798131-5798251 6.51e-01 120 chr3R:8955057-8955177 6.49e-01 120 chr3L:9508804-9508924 9.32e-01 120 chr3L:3770959-3771079 2.37e-02 120 chr2R:17160973-17161093 7.42e-02 120 chr2R:7249105-7249225 5.57e-06 11_[+1(1.55e-06)]_101 chr3R:25293013-25293133 4.87e-05 25_[+2(4.26e-06)]_56_[+1(4.36e-06)]_\ 23 chrX:17737993-17738113 2.15e-03 120 chr3L:8629022-8629142 1.52e-01 120 chr3L:20448095-20448215 6.00e-01 120 chrX:15384121-15384241 9.97e-01 120 chr2R:16832966-16833086 5.13e-04 52_[+1(4.72e-05)]_47_[+3(2.68e-05)]_\ 5 chr2L:8982703-8982823 9.13e-01 120 chr3L:13905689-13905809 9.96e-01 120 chrX:8573969-8574089 7.09e-01 120 chr2L:16275841-16275961 1.22e-05 106_[+3(7.38e-06)]_6 chr2R:18693238-18693358 9.75e-01 120 chr2L:6668033-6668153 2.66e-03 50_[+2(4.26e-06)]_62 chr2L:9387451-9387571 6.10e-02 80_[+1(1.35e-05)]_32 chr3R:11661890-11662010 5.20e-01 120 chr3R:20834986-20835106 9.72e-02 120 chr3L:8951113-8951233 1.00e+00 120 chr3R:10520643-10520763 9.47e-01 120 chr2L:20715198-20715318 9.75e-01 120 chr2L:2905188-2905308 9.94e-01 120 chr3R:22589560-22589680 4.62e-01 120 chr3R:24010972-24011092 9.02e-01 120 chrX:11108296-11108416 3.80e-04 89_[+4(5.71e-05)]_4_[+1(1.63e-05)]_\ 11 chr3R:9370525-9370645 3.32e-01 120 chr3R:14729335-14729455 8.00e-01 120 chr3R:20259530-20259650 2.10e-01 120 chrX:15297075-15297195 8.83e-01 120 chr2L:19003026-19003146 9.68e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************