******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/OdsH.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:17807100-17807220 1.0000 120 chr2R:23522574-23522694 1.0000 120 chrX:17760664-17760784 1.0000 120 chr2R:18168292-18168412 1.0000 120 chrX:17814939-17815059 1.0000 120 chrX:17816474-17816594 1.0000 120 chr2R:6147667-6147787 1.0000 120 chrX:17745892-17746012 1.0000 120 chrX:10728205-10728325 1.0000 120 chr2R:6144373-6144493 1.0000 120 chr2R:24616149-24616269 1.0000 120 chr3R:15588732-15588852 1.0000 120 chr3L:17506131-17506251 1.0000 120 chrX:1595849-1595969 1.0000 120 chr2L:1668845-1668965 1.0000 120 chr2L:5386420-5386540 1.0000 120 chr3R:17220091-17220211 1.0000 120 chr2R:22261224-22261344 1.0000 120 chr2L:7954697-7954817 1.0000 120 chr3L:7792361-7792481 1.0000 120 chr3R:20765823-20765943 1.0000 120 chr3R:18481159-18481279 1.0000 120 chr2L:15407631-15407751 1.0000 120 chr2R:9915181-9915301 1.0000 120 chr2L:3559819-3559939 1.0000 120 chr3R:29283297-29283417 1.0000 120 chr2L:13082302-13082422 1.0000 120 chrX:2196257-2196377 1.0000 120 chr3R:8860633-8860753 1.0000 120 chr2L:634265-634385 1.0000 120 chr3L:21108594-21108714 1.0000 120 chr2L:11395840-11395960 1.0000 120 chr3R:23496579-23496699 1.0000 120 chr3L:15150215-15150335 1.0000 120 chr2L:650967-651087 1.0000 120 chr2L:5904711-5904831 1.0000 120 chr2R:11096432-11096552 1.0000 120 chr3L:3423119-3423239 1.0000 120 chr2L:5003174-5003294 1.0000 120 chr2L:17750278-17750398 1.0000 120 chr2L:423289-423409 1.0000 120 chr3R:31878419-31878539 1.0000 120 chr2R:6969488-6969608 1.0000 120 chr2L:7323068-7323188 1.0000 120 chr3R:31956424-31956544 1.0000 120 chr2R:16720057-16720177 1.0000 120 chr2R:17405113-17405233 1.0000 120 chr2L:3341663-3341783 1.0000 120 chr3R:13372130-13372250 1.0000 120 chr3L:18193767-18193887 1.0000 120 chrX:17755382-17755502 1.0000 120 chrX:17816679-17816799 1.0000 120 chr2L:5288354-5288474 1.0000 120 chr3R:15566508-15566628 1.0000 120 chr2L:7992114-7992234 1.0000 120 chr2R:18698827-18698947 1.0000 120 chr2R:15800052-15800172 1.0000 120 chr3R:19603142-19603262 1.0000 120 chr3R:24039296-24039416 1.0000 120 chr3L:3246898-3247018 1.0000 120 chr3R:17595216-17595336 1.0000 120 chr2R:16818809-16818929 1.0000 120 chr3L:18038310-18038430 1.0000 120 chr2L:5429190-5429310 1.0000 120 chr2L:700967-701087 1.0000 120 chrX:8469189-8469309 1.0000 120 chr3L:13994477-13994597 1.0000 120 chr2L:3781540-3781660 1.0000 120 chr2R:6693176-6693296 1.0000 120 chr2L:7376263-7376383 1.0000 120 chr3R:22635880-22636000 1.0000 120 chr3L:21594536-21594656 1.0000 120 chr2R:10772368-10772488 1.0000 120 chr3L:21100568-21100688 1.0000 120 chr3R:10476101-10476221 1.0000 120 chr3L:14055308-14055428 1.0000 120 chr2L:3844256-3844376 1.0000 120 chr3R:17826034-17826154 1.0000 120 chr2R:14975258-14975378 1.0000 120 chr3R:19283653-19283773 1.0000 120 chr3R:10466445-10466565 1.0000 120 chr3R:17122930-17123050 1.0000 120 chrX:1320526-1320646 1.0000 120 chr2R:19913833-19913953 1.0000 120 chr3L:15977703-15977823 1.0000 120 chr2L:12598090-12598210 1.0000 120 chr3R:14918410-14918530 1.0000 120 chr2R:11509654-11509774 1.0000 120 chr2L:7909346-7909466 1.0000 120 chr3R:14275624-14275744 1.0000 120 chr3L:8157269-8157389 1.0000 120 chr3L:8368822-8368942 1.0000 120 chr2R:22144447-22144567 1.0000 120 chr3L:1336427-1336547 1.0000 120 chr3R:8116092-8116212 1.0000 120 chr2R:15842755-15842875 1.0000 120 chr3L:14353242-14353362 1.0000 120 chr3R:5331865-5331985 1.0000 120 chr3R:5100466-5100586 1.0000 120 chr3R:27171256-27171376 1.0000 120 chr3R:8154102-8154222 1.0000 120 chr3R:30281382-30281502 1.0000 120 chr3L:5365292-5365412 1.0000 120 chr2L:15386868-15386988 1.0000 120 chr3L:16177313-16177433 1.0000 120 chr3L:6771302-6771422 1.0000 120 chr2L:5084977-5085097 1.0000 120 chr3R:8142266-8142386 1.0000 120 chr2L:856155-856275 1.0000 120 chr2L:12823795-12823915 1.0000 120 chr3R:17404320-17404440 1.0000 120 chr3L:9742591-9742711 1.0000 120 chr3L:3037080-3037200 1.0000 120 chr2L:7973938-7974058 1.0000 120 chr2L:17749109-17749229 1.0000 120 chr3R:29076147-29076267 1.0000 120 chr2L:17782043-17782163 1.0000 120 chr3R:22424072-22424192 1.0000 120 chr3R:11614585-11614705 1.0000 120 chr2L:4069805-4069925 1.0000 120 chr3L:8822379-8822499 1.0000 120 chrX:3390048-3390168 1.0000 120 chr2R:18157542-18157662 1.0000 120 chr3L:14564549-14564669 1.0000 120 chr3L:15005202-15005322 1.0000 120 chrX:6542474-6542594 1.0000 120 chr3R:8968973-8969093 1.0000 120 chr3R:14048923-14049043 1.0000 120 chr3R:25633981-25634101 1.0000 120 chr3R:6397879-6397999 1.0000 120 chr3L:6364403-6364523 1.0000 120 chr3L:19504888-19505008 1.0000 120 chrX:5026838-5026958 1.0000 120 chr2R:14009504-14009624 1.0000 120 chr2L:11328441-11328561 1.0000 120 chr3L:18241039-18241159 1.0000 120 chr3L:5633686-5633806 1.0000 120 chr2R:23022667-23022787 1.0000 120 chr3L:1388252-1388372 1.0000 120 chr3L:15258484-15258604 1.0000 120 chrX:17489972-17490092 1.0000 120 chr2R:6143611-6143731 1.0000 120 chr3R:22411971-22412091 1.0000 120 chr2R:6556928-6557048 1.0000 120 chrX:19878829-19878949 1.0000 120 chr3L:2838294-2838414 1.0000 120 chr3R:8272708-8272828 1.0000 120 chrX:5786604-5786724 1.0000 120 chr3R:12443286-12443406 1.0000 120 chr2L:10615967-10616087 1.0000 120 chr3L:728041-728161 1.0000 120 chr3R:30800446-30800566 1.0000 120 chr3L:15670596-15670716 1.0000 120 chrX:8244416-8244536 1.0000 120 chr3R:10579718-10579838 1.0000 120 chrX:19164868-19164988 1.0000 120 chr3L:761834-761954 1.0000 120 chr2L:15304464-15304584 1.0000 120 chr2R:24629565-24629685 1.0000 120 chr2R:19849246-19849366 1.0000 120 chr3L:758662-758782 1.0000 120 chr3R:4873865-4873985 1.0000 120 chr3L:12616548-12616668 1.0000 120 chr3R:22628087-22628207 1.0000 120 chr2L:18003138-18003258 1.0000 120 chr3R:6950220-6950340 1.0000 120 chr3L:663977-664097 1.0000 120 chr3L:512033-512153 1.0000 120 chr3L:3343436-3343556 1.0000 120 chr3L:14083402-14083522 1.0000 120 chr3R:23888770-23888890 1.0000 120 chr2L:5972188-5972308 1.0000 120 chr2L:18678255-18678375 1.0000 120 chrX:6624444-6624564 1.0000 120 chr3L:817856-817976 1.0000 120 chr2R:18256948-18257068 1.0000 120 chr3L:3240418-3240538 1.0000 120 chr3R:29538558-29538678 1.0000 120 chr3L:20549494-20549614 1.0000 120 chrX:15335984-15336104 1.0000 120 chrX:7526221-7526341 1.0000 120 chrX:17830505-17830625 1.0000 120 chr3R:27129796-27129916 1.0000 120 chr3R:22175820-22175940 1.0000 120 chr3L:16796820-16796940 1.0000 120 chrX:2452856-2452976 1.0000 120 chr2L:19454475-19454595 1.0000 120 chr3L:6471950-6472070 1.0000 120 chrX:3411951-3412071 1.0000 120 chr2L:3554049-3554169 1.0000 120 chr3R:8858144-8858264 1.0000 120 chr3L:12270030-12270150 1.0000 120 chr2L:3647630-3647750 1.0000 120 chr2L:11222209-11222329 1.0000 120 chr2L:19490260-19490380 1.0000 120 chr3R:13849438-13849558 1.0000 120 chr2L:16271056-16271176 1.0000 120 chr2R:21850467-21850587 1.0000 120 chr2L:5501492-5501612 1.0000 120 chr3L:1321280-1321400 1.0000 120 chrX:5025418-5025538 1.0000 120 chrX:4936608-4936728 1.0000 120 chrX:13570376-13570496 1.0000 120 chr3R:29096062-29096182 1.0000 120 chr2L:16406625-16406745 1.0000 120 chr3L:10794024-10794144 1.0000 120 chr2L:8859993-8860113 1.0000 120 chr3L:11336510-11336630 1.0000 120 chr3R:11153971-11154091 1.0000 120 chr3R:10661244-10661364 1.0000 120 chr2L:8229743-8229863 1.0000 120 chr3L:2835100-2835220 1.0000 120 chr3R:30811346-30811466 1.0000 120 chrX:5044554-5044674 1.0000 120 chr2L:2481292-2481412 1.0000 120 chrX:6030151-6030271 1.0000 120 chr2L:11306192-11306312 1.0000 120 chr2R:6994756-6994876 1.0000 120 chr2L:5252784-5252904 1.0000 120 chrX:18094847-18094967 1.0000 120 chr3L:17608722-17608842 1.0000 120 chr3L:14239456-14239576 1.0000 120 chr2L:11044816-11044936 1.0000 120 chr2L:15743710-15743830 1.0000 120 chr2R:22546809-22546929 1.0000 120 chr3L:1374620-1374740 1.0000 120 chr2R:21569746-21569866 1.0000 120 chr2R:13476883-13477003 1.0000 120 chrX:14750614-14750734 1.0000 120 chr3R:9768399-9768519 1.0000 120 chr3L:5819419-5819539 1.0000 120 chr2R:6145983-6146103 1.0000 120 chr3R:27201650-27201770 1.0000 120 chr2L:2162798-2162918 1.0000 120 chr3L:14055514-14055634 1.0000 120 chr3R:29256956-29257076 1.0000 120 chr2L:9785946-9786066 1.0000 120 chr2R:16156379-16156499 1.0000 120 chrX:3346715-3346835 1.0000 120 chr3R:23148492-23148612 1.0000 120 chr3L:10711434-10711554 1.0000 120 chr2R:18209846-18209966 1.0000 120 chr2R:14247596-14247716 1.0000 120 chr2R:12532856-12532976 1.0000 120 chr2L:19142637-19142757 1.0000 120 chr3L:736080-736200 1.0000 120 chr2R:22539479-22539599 1.0000 120 chr3R:31505243-31505363 1.0000 120 chrX:3381118-3381238 1.0000 120 chr2L:15385504-15385624 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_OdsH/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/OdsH.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.335 C 0.158 G 0.162 T 0.345 Background letter frequencies (from file dataset with add-one prior applied): A 0.335 C 0.158 G 0.162 T 0.345 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCCSCTGC MEME-1 width = 8 sites = 11 llr = 118 E-value = 2.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCSCTGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2::::::: pos.-specific C 88959::8 probability G :21511a: matrix T :::::9:2 bits 2.7 * 2.4 * 2.1 * * * 1.9 *** * ** Relative 1.6 ***** ** Entropy 1.3 ***** ** (15.4 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCCGCTGC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCSCTGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:10579718-10579838 103 1.76e-06 TGAACCGTTT CCCCCTGC AAAAAGGCGA chr3R:20765823-20765943 94 1.76e-06 GGCCTCCACC CCCCCTGC ATCCAACTCT chrX:17816679-17816799 108 3.09e-06 ACAAGCGATG CCCGCGGC TCAAA chr2R:9915181-9915301 82 3.09e-06 TGCGCCTTTT CGCGCTGC TGTATAAAGT chr2L:15385504-15385624 74 4.39e-06 ATAATATAAA CGCCCTGC ATCTAGATTG chr3L:12616548-12616668 21 1.01e-05 ATAAATAAAC ACCGCTGC TAAGAAATTC chr3R:24039296-24039416 36 1.01e-05 TGAGTCATCG CCCGCTGT CCGCTTTTGT chrX:1595849-1595969 109 1.01e-05 TGTGCCTTCT ACCGCTGC CGTT chr2R:23522574-23522694 73 1.01e-05 AAATACTGCA CCCGCTGT GCATATAAGC chr3R:23148492-23148612 53 1.56e-05 CAGATCTCCT CCCCGTGC TGCCCTTGTA chr2R:24616149-24616269 32 1.56e-05 GGGGAATTTC CCGCCTGC CAGCGCGTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCSCTGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10579718-10579838 1.8e-06 102_[+1]_10 chr3R:20765823-20765943 1.8e-06 93_[+1]_19 chrX:17816679-17816799 3.1e-06 107_[+1]_5 chr2R:9915181-9915301 3.1e-06 81_[+1]_31 chr2L:15385504-15385624 4.4e-06 73_[+1]_39 chr3L:12616548-12616668 1e-05 20_[+1]_92 chr3R:24039296-24039416 1e-05 35_[+1]_77 chrX:1595849-1595969 1e-05 108_[+1]_4 chr2R:23522574-23522694 1e-05 72_[+1]_40 chr3R:23148492-23148612 1.6e-05 52_[+1]_60 chr2R:24616149-24616269 1.6e-05 31_[+1]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCSCTGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCSCTGC width=8 seqs=11 chr3R:10579718-10579838 ( 103) CCCCCTGC 1 chr3R:20765823-20765943 ( 94) CCCCCTGC 1 chrX:17816679-17816799 ( 108) CCCGCGGC 1 chr2R:9915181-9915301 ( 82) CGCGCTGC 1 chr2L:15385504-15385624 ( 74) CGCCCTGC 1 chr3L:12616548-12616668 ( 21) ACCGCTGC 1 chr3R:24039296-24039416 ( 36) CCCGCTGT 1 chrX:1595849-1595969 ( 109) ACCGCTGC 1 chr2R:23522574-23522694 ( 73) CCCGCTGT 1 chr3R:23148492-23148612 ( 53) CCCCGTGC 1 chr2R:24616149-24616269 ( 32) CCGCCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCSCTGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 2.5e+001 -88 238 -1010 -1010 -1010 238 16 -1010 -1010 253 -84 -1010 -1010 153 175 -1010 -1010 253 -84 -1010 -1010 -1010 -84 140 -1010 -1010 262 -1010 -1010 238 -1010 -92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCSCTGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.5e+001 0.181818 0.818182 0.000000 0.000000 0.000000 0.818182 0.181818 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.454545 0.545455 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 1.000000 0.000000 0.000000 0.818182 0.000000 0.181818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCSCTGC MEME-1 regular expression -------------------------------------------------------------------------------- CCC[GC]CTGC -------------------------------------------------------------------------------- Time 8.41 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCWGGSA MEME-2 width = 8 sites = 15 llr = 152 E-value = 2.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCWGGSA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::6:1:a pos.-specific C ::a::15: probability G aa:1785: matrix T :::33::: bits 2.7 *** 2.4 *** 2.1 *** 1.9 *** Relative 1.6 *** **** Entropy 1.3 *** **** (14.6 bits) 1.1 *** **** 0.8 *** **** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCAGGCA consensus TT G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGGSA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:14083402-14083522 101 1.93e-06 TAAGAAAAGT GGCAGGCA TTTATATACT chrX:4936608-4936728 32 3.91e-06 GTTCGATGCC GGCAGGGA ATGAATGCGA chr3R:31878419-31878539 61 3.91e-06 TGATACAGAT GGCAGGGA AAACAACAAA chr3R:15566508-15566628 108 5.90e-06 GGGTATTGAA GGCTGGCA TATCG chr2L:5972188-5972308 85 7.93e-06 GGGGACTGTT GGCTGGGA ATCGAGGGTA chr2L:12598090-12598210 52 7.93e-06 GGAACTATGT GGCTGGGA TCCTCTCAAA chr3R:29283297-29283417 17 7.93e-06 CCCTTCATTC GGCTGGGA GCCCAGCATC chr2R:24616149-24616269 84 8.87e-06 GGTAAATAAG GGCGGGCA ATTGTTTACT chr3L:1374620-1374740 107 1.39e-05 GAGCACTGTA GGCATGCA TCTGAC chr2L:3647630-3647750 51 1.39e-05 TAATATAAAT GGCATGCA TTGATTACTT chr3L:21100568-21100688 99 1.39e-05 CACAACATTT GGCATGCA GCCTTTTACT chr2R:6144373-6144493 20 1.81e-05 ATAGCCTTTA GGCATGGA TGCTCCTACG chrX:10728205-10728325 1 2.82e-05 . GGCAGACA ACAAATAAAC chrX:17830505-17830625 46 3.86e-05 GCCTCAAATT GGCAGAGA TATAAGCATT chr3R:9768399-9768519 12 4.47e-05 CTGTTTCCAT GGCTGCCA ACTTTGTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGGSA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14083402-14083522 1.9e-06 100_[+2]_12 chrX:4936608-4936728 3.9e-06 31_[+2]_81 chr3R:31878419-31878539 3.9e-06 60_[+2]_52 chr3R:15566508-15566628 5.9e-06 107_[+2]_5 chr2L:5972188-5972308 7.9e-06 84_[+2]_28 chr2L:12598090-12598210 7.9e-06 51_[+2]_61 chr3R:29283297-29283417 7.9e-06 16_[+2]_96 chr2R:24616149-24616269 8.9e-06 83_[+2]_29 chr3L:1374620-1374740 1.4e-05 106_[+2]_6 chr2L:3647630-3647750 1.4e-05 50_[+2]_62 chr3L:21100568-21100688 1.4e-05 98_[+2]_14 chr2R:6144373-6144493 1.8e-05 19_[+2]_93 chrX:10728205-10728325 2.8e-05 [+2]_112 chrX:17830505-17830625 3.9e-05 45_[+2]_67 chr3R:9768399-9768519 4.5e-05 11_[+2]_101 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGGSA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCWGGSA width=8 seqs=15 chr3L:14083402-14083522 ( 101) GGCAGGCA 1 chrX:4936608-4936728 ( 32) GGCAGGGA 1 chr3R:31878419-31878539 ( 61) GGCAGGGA 1 chr3R:15566508-15566628 ( 108) GGCTGGCA 1 chr2L:5972188-5972308 ( 85) GGCTGGGA 1 chr2L:12598090-12598210 ( 52) GGCTGGGA 1 chr3R:29283297-29283417 ( 17) GGCTGGGA 1 chr2R:24616149-24616269 ( 84) GGCGGGCA 1 chr3L:1374620-1374740 ( 107) GGCATGCA 1 chr2L:3647630-3647750 ( 51) GGCATGCA 1 chr3L:21100568-21100688 ( 99) GGCATGCA 1 chr2R:6144373-6144493 ( 20) GGCATGGA 1 chrX:10728205-10728325 ( 1) GGCAGACA 1 chrX:17830505-17830625 ( 46) GGCAGAGA 1 chr3R:9768399-9768519 ( 12) GGCTGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGGSA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 2.3e+002 -1055 -1055 262 -1055 -1055 -1055 262 -1055 -1055 267 -1055 -1055 84 -1055 -128 -5 -1055 -1055 217 -37 -133 -124 230 -1055 -1055 176 152 -1055 158 -1055 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGGSA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 2.3e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.066667 0.333333 0.000000 0.000000 0.733333 0.266667 0.133333 0.066667 0.800000 0.000000 0.000000 0.533333 0.466667 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGGSA MEME-2 regular expression -------------------------------------------------------------------------------- GGC[AT][GT]G[CG]A -------------------------------------------------------------------------------- Time 14.74 secs. ******************************************************************************** ******************************************************************************** MOTIF CCRCCCCC MEME-3 width = 8 sites = 2 llr = 27 E-value = 4.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCRCCCCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::5::::: pos.-specific C aa:aaaaa probability G ::5::::: matrix T :::::::: bits 2.7 ** ***** 2.4 ** ***** 2.1 ** ***** 1.9 ** ***** Relative 1.6 ** ***** Entropy 1.3 ** ***** (19.8 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCACCCCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCCCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10772368-10772488 8 3.98e-07 ACCCCTC CCGCCCCC ACACGCGATC chr2R:16720057-16720177 3 1.22e-06 TA CCACCCCC CACCTCCCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCCCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10772368-10772488 4e-07 7_[+3]_105 chr2R:16720057-16720177 1.2e-06 2_[+3]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCCCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCRCCCCC width=8 seqs=2 chr2R:10772368-10772488 ( 8) CCGCCCCC 1 chr2R:16720057-16720177 ( 3) CCACCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCCCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 4.4e+003 -765 266 -765 -765 -765 266 -765 -765 58 -765 162 -765 -765 266 -765 -765 -765 266 -765 -765 -765 266 -765 -765 -765 266 -765 -765 -765 266 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCCCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.4e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCCCC MEME-3 regular expression -------------------------------------------------------------------------------- CC[AG]CCCCC -------------------------------------------------------------------------------- Time 21.01 secs. ******************************************************************************** ******************************************************************************** MOTIF TTKTTTGC MEME-4 width = 8 sites = 48 llr = 382 E-value = 7.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTKTTTGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :2:::::9 probability G 2:6:32a1 matrix T 884a78:: bits 2.7 * 2.4 * 2.1 ** 1.9 ** Relative 1.6 ** Entropy 1.3 * ** (11.5 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTGTTTGC consensus G T GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTTGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22539479-22539599 30 2.98e-05 TGCTCTATAT TTGTTTGC TCTTCTCCGG chr3R:9768399-9768519 85 2.98e-05 GCTAAGTGTT TTGTGTGC CAGGATCAGT chr2L:8859993-8860113 68 2.98e-05 CAATATTTGT TTGTTTGC TTAACTTGTA chrX:5786604-5786724 62 2.98e-05 TGTAAATTAT TTGTGTGC TAGTATTGAA chr3R:22411971-22412091 28 2.98e-05 AAGAAACAAT TTGTTTGC TTTCGACTGC chr3R:17595216-17595336 24 2.98e-05 CCAGTCAAGG TTGTTTGC GTACGTTCTG chr2R:11096432-11096552 17 2.98e-05 CGGAATGGTG TTGTTTGC TTTTGCCACT chr2R:9915181-9915301 67 2.98e-05 TTTTTTGTTT TTGTTTGC GCCTTTTCGC chr2L:1668845-1668965 6 2.98e-05 GGTGC TTGTTTGC TTTGATTTGC chrX:2452856-2452976 82 5.78e-05 GTGGTATAGC TTGTTGGC CTGACAACCA chrX:19164868-19164988 13 5.78e-05 ATTGGGTTGG TTGTGGGC GTCACGTTTT chrX:8244416-8244536 43 5.78e-05 TGCGCCATCG TTGTGGGC GCCAAAAAGA chr3R:30800446-30800566 71 5.78e-05 AAAGATAATT GTGTTTGC ACTGCTCTTT chr2L:7954697-7954817 29 5.78e-05 CCTTTTTTTT GTGTGTGC TGTTTATTTT chrX:1595849-1595969 96 5.78e-05 TGCCACACTT GTGTGTGC CTTCTACCGC chr2R:12532856-12532976 107 7.14e-05 GAATGCAATT TCGTTTGC AGCTTC chrX:13570376-13570496 24 7.14e-05 CAAAATGAAT TCGTGTGC CCACCATATG chrX:17830505-17830625 84 7.14e-05 ATTCCATGGT TCGTTTGC CGAAACAGTC chrX:17760664-17760784 99 7.14e-05 AGACCAGTTA TCGTTTGC TTATTAGACA chr3R:29096062-29096182 10 7.80e-05 ATGCATTAT GTGTTGGC TCATCGTTTG chrX:3346715-3346835 80 1.41e-04 AATTAAATAA TTTTGTGC AAAGAATTTC chr3L:17608722-17608842 23 1.41e-04 TTGTTGAATA TTTTGTGC GATGTTTTCT chr3L:1321280-1321400 10 1.41e-04 TTTTCTTTT TTTTTTGC AATTGGCAGT chr3L:728041-728161 62 1.41e-04 GCATAAGATC TTTTTTGC GAATGAAGTG chr2R:22144447-22144567 29 1.41e-04 TCAAGCATGA TTTTTTGC ACCACCTGGC chr3L:13994477-13994597 75 1.41e-04 TATCATCATT TTTTTTGC CATGAAGTAT chr3L:3246898-3247018 69 1.41e-04 GATTAACCAC TTTTTTGC TATATCTATC chr2L:11395840-11395960 101 1.41e-04 TTTTTGTGTA TTTTGTGC TGAGGAGGAG chr2L:13082302-13082422 14 1.41e-04 CTTCTTTTTT TTTTTTGC TCTGTTGGCT chr3L:14055514-14055634 113 1.54e-04 GGTTCGAAGG GCGTGTGC chr2L:5501492-5501612 3 1.54e-04 TT TCGTGGGC AGCAGATAAC chr3R:17826034-17826154 86 1.54e-04 TTCTAGTAAT TCGTTGGC TTTTATAGCT chr3L:10794024-10794144 39 2.14e-04 AATTTCTATT GTTTTTGC GTTATTTAGT chrX:7526221-7526341 57 2.14e-04 ATGTTGCAAT GTTTTTGC AAAAAAAAAT chr3L:3343436-3343556 73 2.14e-04 TAGTAATTGT TTTTTGGC ATATAAAAGG chr2R:6143611-6143731 74 2.14e-04 ATGTGTTATT TTTTTGGC AATTTCACAT chr2R:15842755-15842875 100 2.14e-04 GAAATGCTTA GTTTTTGC TCTTTGTACA chr2L:650967-651087 49 2.14e-04 CTGAAAAAAT TTTTGGGC TTTCGTCTGC chr2R:6147667-6147787 96 2.14e-04 attaaattTT GTTTTTGC AAAATAAACT chr3L:12270030-12270150 79 2.46e-04 GAATATTTAT TCTTTTGC TTATTAAAGT chr3L:663977-664097 108 2.46e-04 AGGGACATAG TCTTTTGC TTTCT chr3L:1336427-1336547 70 2.60e-04 CTACCAAACT GTTTTGGC CATATAAATT chr3L:2835100-2835220 16 3.31e-04 AGAAAAAGAT TTGTTTGG GAGAGCAGCC chrX:15335984-15336104 65 3.31e-04 TATCTTTATA TTGCGTGC AATCTTTATT chr3R:6397879-6397999 112 3.31e-04 ATGTAAGCTT TTGTGTGG T chr3R:8860633-8860753 24 3.31e-04 TACATTGGGT TTGTGTGG ATTGAAAATT chr2R:23522574-23522694 41 3.31e-04 ATGCGTCCCT TTGTTTGG CGAAAAAGCA chr3L:1388252-1388372 82 5.03e-04 TATAAATATC TTTCTTGC CATAAAGTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTTGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22539479-22539599 3e-05 29_[+4]_83 chr3R:9768399-9768519 3e-05 84_[+4]_28 chr2L:8859993-8860113 3e-05 67_[+4]_45 chrX:5786604-5786724 3e-05 61_[+4]_51 chr3R:22411971-22412091 3e-05 27_[+4]_85 chr3R:17595216-17595336 3e-05 23_[+4]_89 chr2R:11096432-11096552 3e-05 16_[+4]_96 chr2R:9915181-9915301 3e-05 66_[+4]_46 chr2L:1668845-1668965 3e-05 5_[+4]_107 chrX:2452856-2452976 5.8e-05 81_[+4]_31 chrX:19164868-19164988 5.8e-05 12_[+4]_100 chrX:8244416-8244536 5.8e-05 42_[+4]_70 chr3R:30800446-30800566 5.8e-05 70_[+4]_42 chr2L:7954697-7954817 5.8e-05 28_[+4]_84 chrX:1595849-1595969 5.8e-05 95_[+4]_17 chr2R:12532856-12532976 7.1e-05 106_[+4]_6 chrX:13570376-13570496 7.1e-05 23_[+4]_89 chrX:17830505-17830625 7.1e-05 83_[+4]_29 chrX:17760664-17760784 7.1e-05 98_[+4]_14 chr3R:29096062-29096182 7.8e-05 9_[+4]_103 chrX:3346715-3346835 0.00014 79_[+4]_33 chr3L:17608722-17608842 0.00014 22_[+4]_90 chr3L:1321280-1321400 0.00014 9_[+4]_103 chr3L:728041-728161 0.00014 61_[+4]_51 chr2R:22144447-22144567 0.00014 28_[+4]_84 chr3L:13994477-13994597 0.00014 74_[+4]_38 chr3L:3246898-3247018 0.00014 68_[+4]_44 chr2L:11395840-11395960 0.00014 100_[+4]_12 chr2L:13082302-13082422 0.00014 13_[+4]_99 chr3L:14055514-14055634 0.00015 112_[+4] chr2L:5501492-5501612 0.00015 2_[+4]_110 chr3R:17826034-17826154 0.00015 85_[+4]_27 chr3L:10794024-10794144 0.00021 38_[+4]_74 chrX:7526221-7526341 0.00021 56_[+4]_56 chr3L:3343436-3343556 0.00021 72_[+4]_40 chr2R:6143611-6143731 0.00021 73_[+4]_39 chr2R:15842755-15842875 0.00021 99_[+4]_13 chr2L:650967-651087 0.00021 48_[+4]_64 chr2R:6147667-6147787 0.00021 95_[+4]_17 chr3L:12270030-12270150 0.00025 78_[+4]_34 chr3L:663977-664097 0.00025 107_[+4]_5 chr3L:1336427-1336547 0.00026 69_[+4]_43 chr3L:2835100-2835220 0.00033 15_[+4]_97 chrX:15335984-15336104 0.00033 64_[+4]_48 chr3R:6397879-6397999 0.00033 111_[+4]_1 chr3R:8860633-8860753 0.00033 23_[+4]_89 chr2R:23522574-23522694 0.00033 40_[+4]_72 chr3L:1388252-1388372 0.0005 81_[+4]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTTGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTKTTTGC width=8 seqs=48 chr2R:22539479-22539599 ( 30) TTGTTTGC 1 chr3R:9768399-9768519 ( 85) TTGTGTGC 1 chr2L:8859993-8860113 ( 68) TTGTTTGC 1 chrX:5786604-5786724 ( 62) TTGTGTGC 1 chr3R:22411971-22412091 ( 28) TTGTTTGC 1 chr3R:17595216-17595336 ( 24) TTGTTTGC 1 chr2R:11096432-11096552 ( 17) TTGTTTGC 1 chr2R:9915181-9915301 ( 67) TTGTTTGC 1 chr2L:1668845-1668965 ( 6) TTGTTTGC 1 chrX:2452856-2452976 ( 82) TTGTTGGC 1 chrX:19164868-19164988 ( 13) TTGTGGGC 1 chrX:8244416-8244536 ( 43) TTGTGGGC 1 chr3R:30800446-30800566 ( 71) GTGTTTGC 1 chr2L:7954697-7954817 ( 29) GTGTGTGC 1 chrX:1595849-1595969 ( 96) GTGTGTGC 1 chr2R:12532856-12532976 ( 107) TCGTTTGC 1 chrX:13570376-13570496 ( 24) TCGTGTGC 1 chrX:17830505-17830625 ( 84) TCGTTTGC 1 chrX:17760664-17760784 ( 99) TCGTTTGC 1 chr3R:29096062-29096182 ( 10) GTGTTGGC 1 chrX:3346715-3346835 ( 80) TTTTGTGC 1 chr3L:17608722-17608842 ( 23) TTTTGTGC 1 chr3L:1321280-1321400 ( 10) TTTTTTGC 1 chr3L:728041-728161 ( 62) TTTTTTGC 1 chr2R:22144447-22144567 ( 29) TTTTTTGC 1 chr3L:13994477-13994597 ( 75) TTTTTTGC 1 chr3L:3246898-3247018 ( 69) TTTTTTGC 1 chr2L:11395840-11395960 ( 101) TTTTGTGC 1 chr2L:13082302-13082422 ( 14) TTTTTTGC 1 chr3L:14055514-14055634 ( 113) GCGTGTGC 1 chr2L:5501492-5501612 ( 3) TCGTGGGC 1 chr3R:17826034-17826154 ( 86) TCGTTGGC 1 chr3L:10794024-10794144 ( 39) GTTTTTGC 1 chrX:7526221-7526341 ( 57) GTTTTTGC 1 chr3L:3343436-3343556 ( 73) TTTTTGGC 1 chr2R:6143611-6143731 ( 74) TTTTTGGC 1 chr2R:15842755-15842875 ( 100) GTTTTTGC 1 chr2L:650967-651087 ( 49) TTTTGGGC 1 chr2R:6147667-6147787 ( 96) GTTTTTGC 1 chr3L:12270030-12270150 ( 79) TCTTTTGC 1 chr3L:663977-664097 ( 108) TCTTTTGC 1 chr3L:1336427-1336547 ( 70) GTTTTGGC 1 chr3L:2835100-2835220 ( 16) TTGTTTGG 1 chrX:15335984-15336104 ( 65) TTGCGTGC 1 chr3R:6397879-6397999 ( 112) TTGTGTGG 1 chr3R:8860633-8860753 ( 24) TTGTGTGG 1 chr2R:23522574-23522694 ( 41) TTGTTTGG 1 chr3L:1388252-1388372 ( 82) TTTCTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTTGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.64666 E= 7.2e+003 -1223 -1223 36 120 -1223 25 -1223 123 -1223 -1223 184 27 -1223 -192 -1223 147 -1223 -1223 104 95 -1223 -1223 36 120 -1223 -1223 262 -1223 -1223 254 -96 -1223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTTGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 7.2e+003 0.000000 0.000000 0.208333 0.791667 0.000000 0.187500 0.000000 0.812500 0.000000 0.000000 0.583333 0.416667 0.000000 0.041667 0.000000 0.958333 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.208333 0.791667 0.000000 0.000000 1.000000 0.000000 0.000000 0.916667 0.083333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTTGC MEME-4 regular expression -------------------------------------------------------------------------------- [TG]T[GT]T[TG][TG]GC -------------------------------------------------------------------------------- Time 27.29 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGCGGG MEME-5 width = 8 sites = 2 llr = 29 E-value = 8.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGCGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::a:a::: probability G aa:a:aaa matrix T :::::::: bits 2.7 ******** 2.4 ******** 2.1 ******** 1.9 ******** Relative 1.6 ******** Entropy 1.3 ******** (21.1 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCGCGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23148492-23148612 109 4.51e-07 TGATGATGGT GGCGCGGG TCGG chr3R:30800446-30800566 7 4.51e-07 AACTAA GGCGCGGG TTTTAGGATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23148492-23148612 4.5e-07 108_[+5]_4 chr3R:30800446-30800566 4.5e-07 6_[+5]_106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGCGGG width=8 seqs=2 chr3R:23148492-23148612 ( 109) GGCGCGGG 1 chr3R:30800446-30800566 ( 7) GGCGCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 8.4e+003 -765 -765 262 -765 -765 -765 262 -765 -765 266 -765 -765 -765 -765 262 -765 -765 266 -765 -765 -765 -765 262 -765 -765 -765 262 -765 -765 -765 262 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 8.4e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCGGG MEME-5 regular expression -------------------------------------------------------------------------------- GGCGCGGG -------------------------------------------------------------------------------- Time 33.47 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17807100-17807220 9.99e-01 120 chr2R:23522574-23522694 1.97e-03 72_[+1(1.01e-05)]_40 chrX:17760664-17760784 1.59e-01 98_[+4(7.14e-05)]_14 chr2R:18168292-18168412 9.05e-01 120 chrX:17814939-17815059 9.90e-01 120 chrX:17816474-17816594 7.46e-01 120 chr2R:6147667-6147787 5.81e-01 120 chrX:17745892-17746012 8.84e-01 120 chrX:10728205-10728325 7.94e-02 [+2(2.82e-05)]_112 chr2R:6144373-6144493 1.08e-01 19_[+2(1.81e-05)]_93 chr2R:24616149-24616269 5.17e-06 18_[+2(9.82e-06)]_5_[+1(1.56e-05)]_\ 44_[+2(8.87e-06)]_29 chr3R:15588732-15588852 1.00e+00 120 chr3L:17506131-17506251 5.45e-01 120 chrX:1595849-1595969 1.53e-04 95_[+4(5.78e-05)]_5_[+1(1.01e-05)]_\ 4 chr2L:1668845-1668965 2.73e-02 5_[+4(2.98e-05)]_107 chr2L:5386420-5386540 6.98e-01 120 chr3R:17220091-17220211 9.98e-01 120 chr2R:22261224-22261344 3.40e-01 120 chr2L:7954697-7954817 1.08e-01 28_[+4(5.78e-05)]_84 chr3L:7792361-7792481 1.35e-02 62_[+2(7.31e-05)]_50 chr3R:20765823-20765943 6.46e-06 85_[+3(9.42e-05)]_[+1(1.76e-06)]_19 chr3R:18481159-18481279 1.37e-01 120 chr2L:15407631-15407751 9.48e-01 120 chr2R:9915181-9915301 3.21e-04 66_[+4(2.98e-05)]_7_[+1(3.09e-06)]_\ 31 chr2L:3559819-3559939 9.87e-01 120 chr3R:29283297-29283417 5.25e-03 16_[+2(7.93e-06)]_96 chr2L:13082302-13082422 3.25e-02 120 chrX:2196257-2196377 2.29e-01 120 chr3R:8860633-8860753 6.06e-02 120 chr2L:634265-634385 3.15e-01 120 chr3L:21108594-21108714 9.84e-01 120 chr2L:11395840-11395960 1.16e-01 120 chr3R:23496579-23496699 9.33e-01 120 chr3L:15150215-15150335 1.81e-01 120 chr2L:650967-651087 7.80e-03 120 chr2L:5904711-5904831 2.67e-01 120 chr2R:11096432-11096552 3.37e-03 16_[+4(2.98e-05)]_96 chr3L:3423119-3423239 8.86e-01 120 chr2L:5003174-5003294 8.97e-01 120 chr2L:17750278-17750398 9.42e-01 120 chr2L:423289-423409 9.89e-01 120 chr3R:31878419-31878539 2.67e-02 60_[+2(3.91e-06)]_52 chr2R:6969488-6969608 9.99e-01 120 chr2L:7323068-7323188 1.89e-01 8_[+1(8.34e-05)]_104 chr3R:31956424-31956544 7.15e-01 120 chr2R:16720057-16720177 8.88e-03 2_[+3(1.22e-06)]_110 chr2R:17405113-17405233 8.59e-01 120 chr2L:3341663-3341783 9.77e-01 120 chr3R:13372130-13372250 3.52e-01 120 chr3L:18193767-18193887 5.79e-01 120 chrX:17755382-17755502 9.59e-01 120 chrX:17816679-17816799 7.17e-05 107_[+1(3.09e-06)]_5 chr2L:5288354-5288474 7.75e-01 120 chr3R:15566508-15566628 1.80e-02 107_[+2(5.90e-06)]_5 chr2L:7992114-7992234 7.58e-01 120 chr2R:18698827-18698947 9.92e-01 120 chr2R:15800052-15800172 9.32e-01 120 chr3R:19603142-19603262 9.72e-01 120 chr3R:24039296-24039416 2.28e-03 35_[+1(1.01e-05)]_77 chr3L:3246898-3247018 1.34e-01 120 chr3R:17595216-17595336 5.71e-02 23_[+4(2.98e-05)]_89 chr2R:16818809-16818929 9.98e-01 120 chr3L:18038310-18038430 1.65e-01 120 chr2L:5429190-5429310 1.92e-02 15_[+3(1.73e-05)]_97 chr2L:700967-701087 7.89e-01 120 chrX:8469189-8469309 3.68e-01 120 chr3L:13994477-13994597 3.56e-01 120 chr2L:3781540-3781660 1.00e+00 120 chr2R:6693176-6693296 7.70e-01 120 chr2L:7376263-7376383 3.86e-02 8_[+2(6.06e-05)]_104 chr3R:22635880-22636000 6.64e-01 120 chr3L:21594536-21594656 4.40e-02 15_[+1(8.34e-05)]_97 chr2R:10772368-10772488 5.28e-05 7_[+3(3.98e-07)]_105 chr3L:21100568-21100688 1.58e-01 98_[+2(1.39e-05)]_14 chr3R:10476101-10476221 9.89e-01 120 chr3L:14055308-14055428 3.81e-01 120 chr2L:3844256-3844376 9.78e-01 120 chr3R:17826034-17826154 3.26e-01 120 chr2R:14975258-14975378 2.22e-01 120 chr3R:19283653-19283773 9.94e-01 120 chr3R:10466445-10466565 6.07e-01 120 chr3R:17122930-17123050 9.75e-01 120 chrX:1320526-1320646 3.57e-01 120 chr2R:19913833-19913953 6.30e-01 120 chr3L:15977703-15977823 8.03e-01 120 chr2L:12598090-12598210 6.55e-02 51_[+2(7.93e-06)]_61 chr3R:14918410-14918530 3.21e-01 120 chr2R:11509654-11509774 8.07e-01 120 chr2L:7909346-7909466 9.99e-01 120 chr3R:14275624-14275744 5.37e-01 120 chr3L:8157269-8157389 5.37e-01 120 chr3L:8368822-8368942 9.14e-01 120 chr2R:22144447-22144567 8.91e-03 120 chr3L:1336427-1336547 2.87e-02 120 chr3R:8116092-8116212 5.17e-01 120 chr2R:15842755-15842875 5.03e-01 120 chr3L:14353242-14353362 4.77e-01 120 chr3R:5331865-5331985 9.92e-01 120 chr3R:5100466-5100586 9.97e-01 120 chr3R:27171256-27171376 9.94e-01 120 chr3R:8154102-8154222 6.80e-01 120 chr3R:30281382-30281502 6.87e-01 120 chr3L:5365292-5365412 3.23e-01 120 chr2L:15386868-15386988 8.88e-02 120 chr3L:16177313-16177433 6.95e-01 120 chr3L:6771302-6771422 6.77e-01 120 chr2L:5084977-5085097 1.42e-01 72_[+2(7.31e-05)]_40 chr3R:8142266-8142386 9.99e-01 120 chr2L:856155-856275 6.81e-01 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******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************