******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/NfI.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:12005473-12005593 1.0000 120 chr2L:1362360-1362480 1.0000 120 chr3R:11338423-11338543 1.0000 120 chr3L:22276775-22276895 1.0000 120 chr3R:23803795-23803915 1.0000 120 chrX:4849539-4849659 1.0000 120 chr3R:13320015-13320135 1.0000 120 chr3R:20634676-20634796 1.0000 120 chr2L:4403148-4403268 1.0000 120 chr3L:27267159-27267279 1.0000 120 chr3L:8741346-8741466 1.0000 120 chr2L:6357081-6357201 1.0000 120 chr3R:7779764-7779884 1.0000 120 chr3L:8763210-8763330 1.0000 120 chr3R:8009271-8009391 1.0000 120 chr2L:13905458-13905578 1.0000 120 chr3R:23921825-23921945 1.0000 120 chr2R:16610062-16610182 1.0000 120 chr3R:31134155-31134275 1.0000 120 chr3R:21263306-21263426 1.0000 120 chr3L:19834278-19834398 1.0000 120 chr3R:31810303-31810423 1.0000 120 chrX:10573673-10573793 1.0000 120 chr3R:25123369-25123489 1.0000 120 chr2R:19292107-19292227 1.0000 120 chr3L:15161679-15161799 1.0000 120 chr3L:3770966-3771086 1.0000 120 chr2L:3030441-3030561 1.0000 120 chr2L:20464482-20464602 1.0000 120 chr3L:19861328-19861448 1.0000 120 chrX:14234161-14234281 1.0000 120 chr3L:6609344-6609464 1.0000 120 chr3L:630192-630312 1.0000 120 chr3L:1035118-1035238 1.0000 120 chr3L:14028591-14028711 1.0000 120 chrX:20434689-20434809 1.0000 120 chr3R:16355548-16355668 1.0000 120 chr2L:18150717-18150837 1.0000 120 chrX:13088181-13088301 1.0000 120 chr2R:9903429-9903549 1.0000 120 chr3L:19132748-19132868 1.0000 120 chr3L:21321904-21322024 1.0000 120 chr2R:12870161-12870281 1.0000 120 chr2R:12218923-12219043 1.0000 120 chr2R:7241705-7241825 1.0000 120 chrX:2947558-2947678 1.0000 120 chr3L:6752853-6752973 1.0000 120 chr2R:7249147-7249267 1.0000 120 chrX:17696801-17696921 1.0000 120 chr2R:24046806-24046926 1.0000 120 chr3R:15250659-15250779 1.0000 120 chr2L:3748830-3748950 1.0000 120 chr3L:12526961-12527081 1.0000 120 chr3L:19961919-19962039 1.0000 120 chrX:6110035-6110155 1.0000 120 chr3L:5359406-5359526 1.0000 120 chr2R:5984266-5984386 1.0000 120 chrX:14169220-14169340 1.0000 120 chr2L:3472379-3472499 1.0000 120 chrX:12470691-12470811 1.0000 120 chr3R:17655162-17655282 1.0000 120 chr3L:11720842-11720962 1.0000 120 chr3R:29068952-29069072 1.0000 120 chr3L:4413162-4413282 1.0000 120 chr3L:3789256-3789376 1.0000 120 chr3R:28599632-28599752 1.0000 120 chr2L:9614026-9614146 1.0000 120 chr3L:3814647-3814767 1.0000 120 chr2L:16519760-16519880 1.0000 120 chr2L:1629684-1629804 1.0000 120 chrX:9193782-9193902 1.0000 120 chr3R:8354520-8354640 1.0000 120 chr3R:31060367-31060487 1.0000 120 chr2L:6465631-6465751 1.0000 120 chrX:1270708-1270828 1.0000 120 chr2L:1837822-1837942 1.0000 120 chr3R:9430567-9430687 1.0000 120 chr3L:10899338-10899458 1.0000 120 chrX:6255491-6255611 1.0000 120 chr2L:6956875-6956995 1.0000 120 chr3L:627873-627993 1.0000 120 chrX:18517552-18517672 1.0000 120 chr3R:20948113-20948233 1.0000 120 chrX:15653666-15653786 1.0000 120 chr2L:21156217-21156337 1.0000 120 chr2R:6668928-6669048 1.0000 120 chr3R:23028645-23028765 1.0000 120 chr3L:5554527-5554647 1.0000 120 chr2L:12002962-12003082 1.0000 120 chr3R:5861298-5861418 1.0000 120 chr3L:5182395-5182515 1.0000 120 chr2R:22450479-22450599 1.0000 120 chr2R:15371490-15371610 1.0000 120 chr2L:16547814-16547934 1.0000 120 chr3R:5300740-5300860 1.0000 120 chr3R:27937883-27938003 1.0000 120 chr3L:4379035-4379155 1.0000 120 chr2L:3477343-3477463 1.0000 120 chr4:406950-407070 1.0000 120 chr3R:26888455-26888575 1.0000 120 chr3R:27988953-27989073 1.0000 120 chr3L:2845356-2845476 1.0000 120 chr2L:16703837-16703957 1.0000 120 chr3R:26230226-26230346 1.0000 120 chr3R:28676993-28677113 1.0000 120 chr3L:22471734-22471854 1.0000 120 chrX:15063828-15063948 1.0000 120 chr3R:26280488-26280608 1.0000 120 chr3L:4254664-4254784 1.0000 120 chr2L:13414975-13415095 1.0000 120 chr2R:17478600-17478720 1.0000 120 chr2L:13398889-13399009 1.0000 120 chr3R:11809789-11809909 1.0000 120 chr3R:9417933-9418053 1.0000 120 chrX:4262813-4262933 1.0000 120 chr3R:22464612-22464732 1.0000 120 chr2L:7395949-7396069 1.0000 120 chrX:5312137-5312257 1.0000 120 chr3R:21993030-21993150 1.0000 120 chr2R:18514025-18514145 1.0000 120 chrX:11081377-11081497 1.0000 120 chr3L:9898576-9898696 1.0000 120 chr2R:22075888-22076008 1.0000 120 chr2R:19389451-19389571 1.0000 120 chr2R:4516455-4516575 1.0000 120 chr3R:14657159-14657279 1.0000 120 chr3R:29859904-29860024 1.0000 120 chr2L:10468544-10468664 1.0000 120 chr2L:4441005-4441125 1.0000 120 chrX:11451181-11451301 1.0000 120 chr2R:17564764-17564884 1.0000 120 chr2L:5043911-5044031 1.0000 120 chr3L:15094962-15095082 1.0000 120 chr3R:21373521-21373641 1.0000 120 chr3R:24206855-24206975 1.0000 120 chr2R:20906652-20906772 1.0000 120 chrX:1880383-1880503 1.0000 120 chr3L:14190089-14190209 1.0000 120 chr3L:18782199-18782319 1.0000 120 chr2L:6047913-6048033 1.0000 120 chrX:7710937-7711057 1.0000 120 chr3R:31744161-31744281 1.0000 120 chrX:8542124-8542244 1.0000 120 chrX:20507859-20507979 1.0000 120 chr2R:13008258-13008378 1.0000 120 chr2R:24657175-24657295 1.0000 120 chr2L:7258224-7258344 1.0000 120 chr2R:11435226-11435346 1.0000 120 chr2L:1980742-1980862 1.0000 120 chrX:9584821-9584941 1.0000 120 chr2R:18326609-18326729 1.0000 120 chrX:2061296-2061416 1.0000 120 chr2R:16800180-16800300 1.0000 120 chr2L:20097267-20097387 1.0000 120 chr2L:5981630-5981750 1.0000 120 chr3R:5470777-5470897 1.0000 120 chr2L:6070923-6071043 1.0000 120 chrX:17176692-17176812 1.0000 120 chr3L:6264570-6264690 1.0000 120 chr3R:24830047-24830167 1.0000 120 chr3L:19016529-19016649 1.0000 120 chr3L:4186828-4186948 1.0000 120 chr2R:12337684-12337804 1.0000 120 chr3L:21196717-21196837 1.0000 120 chr2R:24943202-24943322 1.0000 120 chr2R:9109714-9109834 1.0000 120 chr3R:16834770-16834890 1.0000 120 chr2L:13833150-13833270 1.0000 120 chr3L:3543046-3543166 1.0000 120 chr2R:11921147-11921267 1.0000 120 chr2L:8488863-8488983 1.0000 120 chr2R:5128331-5128451 1.0000 120 chr3R:4387623-4387743 1.0000 120 chr2L:16647833-16647953 1.0000 120 chr2L:13371003-13371123 1.0000 120 chr2L:20811335-20811455 1.0000 120 chr2L:8738298-8738418 1.0000 120 chrX:3968809-3968929 1.0000 120 chr3R:6468152-6468272 1.0000 120 chr3R:16748684-16748804 1.0000 120 chr3R:12350623-12350743 1.0000 120 chr2L:14094780-14094900 1.0000 120 chr2R:18776957-18777077 1.0000 120 chrX:1890083-1890203 1.0000 120 chr2R:21571317-21571437 1.0000 120 chrX:15297049-15297169 1.0000 120 chr2L:10858215-10858335 1.0000 120 chrX:19613623-19613743 1.0000 120 chr3L:12653255-12653375 1.0000 120 chr3L:13922358-13922478 1.0000 120 chr2L:16709739-16709859 1.0000 120 chr3R:17072661-17072781 1.0000 120 chrX:4010969-4011089 1.0000 120 chr3R:5686499-5686619 1.0000 120 chr3L:15563030-15563150 1.0000 120 chr3R:22862138-22862258 1.0000 120 chr2R:16571159-16571279 1.0000 120 chr3L:7249321-7249441 1.0000 120 chr3L:8446179-8446299 1.0000 120 chr4:404470-404590 1.0000 120 chr2L:19003070-19003190 1.0000 120 chr3L:21841324-21841444 1.0000 120 chr3R:24010932-24011052 1.0000 120 chr3L:6059238-6059358 1.0000 120 chr3R:9370561-9370681 1.0000 120 chr3L:18784680-18784800 1.0000 120 chr2R:21508007-21508127 1.0000 120 chr2R:8900181-8900301 1.0000 120 chrX:16782205-16782325 1.0000 120 chr2R:23940199-23940319 1.0000 120 chr3L:21640841-21640961 1.0000 120 chr3L:15921306-15921426 1.0000 120 chr3L:9127381-9127501 1.0000 120 chr2R:16170806-16170926 1.0000 120 chr3L:23095410-23095530 1.0000 120 chrX:1322377-1322497 1.0000 120 chr2R:13429195-13429315 1.0000 120 chr3L:12504133-12504253 1.0000 120 chr3L:20242368-20242488 1.0000 120 chr3R:12016975-12017095 1.0000 120 chr3R:5998347-5998467 1.0000 120 chr3R:30796844-30796964 1.0000 120 chr2L:21787115-21787235 1.0000 120 chr3R:15837268-15837388 1.0000 120 chr2L:12424682-12424802 1.0000 120 chr3R:24582844-24582964 1.0000 120 chr3R:29039832-29039952 1.0000 120 chr2R:15330657-15330777 1.0000 120 chr2R:13198319-13198439 1.0000 120 chrX:2087622-2087742 1.0000 120 chr3R:14347413-14347533 1.0000 120 chr2R:10559356-10559476 1.0000 120 chr3L:4313427-4313547 1.0000 120 chr3R:21218969-21219089 1.0000 120 chr3R:23921268-23921388 1.0000 120 chr2R:22531129-22531249 1.0000 120 chrX:8113525-8113645 1.0000 120 chr3R:8181519-8181639 1.0000 120 chr3L:6743139-6743259 1.0000 120 chrX:21373904-21374024 1.0000 120 chr2R:17796706-17796826 1.0000 120 chr2R:9110675-9110795 1.0000 120 chr2L:3813413-3813533 1.0000 120 chr3R:9053853-9053973 1.0000 120 chr3L:9847571-9847691 1.0000 120 chr2R:21664062-21664182 1.0000 120 chr2R:11427810-11427930 1.0000 120 chr2L:4847303-4847423 1.0000 120 chr2R:7525701-7525821 1.0000 120 chr3L:8063584-8063704 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_NfI/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/NfI.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.307 C 0.195 G 0.189 T 0.309 Background letter frequencies (from file dataset with add-one prior applied): A 0.307 C 0.195 G 0.189 T 0.309 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF STGGCRVC MEME-1 width = 8 sites = 58 llr = 473 E-value = 3.2e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif STGGCRVC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 23:::53: pos.-specific C 5::2a:4a probability G 31a8:53: matrix T :7:::::: bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 *** * Relative 1.4 *** * Entropy 1.2 *** * (11.8 bits) 1.0 **** * 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGGCGCC consensus GA C AA sequence A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGGCRVC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:6264570-6264690 32 3.02e-06 TCAAGATTTA CTGGCGCC ATCTAGGGCC chrX:18517552-18517672 72 5.94e-06 ACGGCGCCCT CTGGCGGC GGACGCGTCA chr2R:16800180-16800300 112 8.86e-06 TTTCGTATAG GTGGCGCC A chr3L:10899338-10899458 41 8.86e-06 CTTTGTTGTA GTGGCGCC CTCTTTTGTT chrX:6110035-6110155 68 8.86e-06 CGGACGCCAG GTGGCGCC ACACATGTAG chr2L:1362360-1362480 44 8.86e-06 GATTCCGTTT GTGGCGCC ATCTCTTCGC chr3R:24582844-24582964 62 1.85e-05 TTGCATTGCG CTGGCGAC CAGTGTTGCA chrX:9584821-9584941 91 1.85e-05 TGCGTACTAA CTGGCGAC CCACAATGGT chr3R:31060367-31060487 65 1.85e-05 ACTTCCTCTG CTGGCGAC GCTGCTTTTC chr2L:12005473-12005593 18 1.85e-05 GACCCTGGCA CTGGCGAC GCTCTAAAAT chr2R:24046806-24046926 9 2.43e-05 AGGGTTGC CAGGCGCC GGCAAAGTAT chr3R:31134155-31134275 32 2.43e-05 TTAAGTCAGC CAGGCGCC ATCTATTGGC chr2L:12424682-12424802 72 2.91e-05 CTAGCGCCAC CTGGCAGC AGTAGGTTCT chrX:1322377-1322497 54 2.91e-05 CTGCTCCGCT CTGGCAGC ACTTTTCCGG chrX:3968809-3968929 107 2.91e-05 TACCACAGGT CTGGCAGC GCAAAA chr3L:21196717-21196837 76 2.91e-05 CAAACACCAG CTGGCAGC CATTCGGAGG chrX:7710937-7711057 77 5.69e-05 TAATCCATAG ATGGCGCC AGATGTTTCG chr2R:20906652-20906772 103 5.69e-05 CCAACGGTAG ATGGCGCC AGTGCAACAT chr3L:9898576-9898696 7 5.69e-05 AGCTAT CTGGCAAC GATGTCCCGT chrX:5312137-5312257 62 5.69e-05 TCCCAACGAC CTGGCAAC CCTAACACGC chrX:15063828-15063948 49 5.69e-05 GCATCGCGAA CTGGCAAC GCTGTCAGCA chr2L:6465631-6465751 47 5.69e-05 CGACTTCCAA CTGGCAAC GGAAGTTAGC chr2L:3472379-3472499 86 5.69e-05 GCCTGTGCAG ATGGCGCC ACCATGACGC chr3L:19132748-19132868 104 5.69e-05 TTCTTGCCAT CTGCCGCC ATTTCCCCG chr3L:8763210-8763330 26 5.69e-05 GATACATCGA CTGCCGCC CACACTTTTA chr3L:22276775-22276895 111 5.69e-05 GCATATTGTG CAGGCGGC GG chr3L:3789256-3789376 68 5.98e-05 AGCAGTTTGA GAGGCGCC GCAAGTTTGC chr2L:6070923-6071043 90 7.11e-05 ATACAAATCG GTGGCAGC CCTGTGTCAG chr2L:6047913-6048033 103 7.11e-05 GAAAGTGCCG CAGGCACC CTGTAGCGGT chr3R:26888455-26888575 99 7.11e-05 ATATTGTTAA CAGGCACC AATTTGAATT chr3R:17655162-17655282 29 7.59e-05 TCAACATTCG CAGGCGAC CAACACACCA chr3R:16748684-16748804 66 9.68e-05 ATGCAACTCA GTGCCGCC ATCTGACGTA chr3R:21373521-21373641 102 9.68e-05 GTTTCCGGAA GTGGCAAC ACCGTCCTCA chr2L:20464482-20464602 44 9.68e-05 TGAACTGATT GTGGCAAC AAACGCCAGA chr3L:15161679-15161799 87 9.68e-05 GAAAAACAAA GTGGCAAC CCTTCTATAA chr3L:18784680-18784800 80 1.16e-04 atttttcata cgggcggc cacccctttt chr2R:12337684-12337804 98 1.16e-04 ACAGTCTGCA CTGCCACC TATTTAGCGA chr3R:21263306-21263426 11 1.16e-04 CGCCATTACA CGGGCGGC CATCACCGGA chr2R:15330657-15330777 30 1.35e-04 TTGTATTGGT GGGGCGCC ACCATTGCTC chr3L:21640841-21640961 20 1.64e-04 GTCTTGAATA AAGGCGCC AACTGGGCAG chr3L:21841324-21841444 105 1.64e-04 AGCTATCGAT AAGGCGCC AAGAATGC chr3R:5470777-5470897 102 1.64e-04 TTGTAGCTAA AAGGCGCC AGTACTAAAT chr3R:29039832-29039952 97 1.76e-04 TACGGCAACT CTGCCAGC TGGAAGACCT chr3L:12526961-12527081 74 1.76e-04 CGTTTCAATT CTGCCAGC TCCATTAACA chr3L:8063584-8063704 8 1.87e-04 ATCTCGG GTGCCACC ATTAACCCTG chr2R:13429195-13429315 92 1.95e-04 TAAGTTTTCA GTGCCGAC TAAGTTATAA chr2R:7525701-7525821 58 2.31e-04 CCGGCTTGGG CTGCCAAC CATAAGAGAA chr3R:23921268-23921388 90 2.31e-04 AAGCAACAGC AAGGCGGC AAGAAGGGGA chr3L:12653255-12653375 102 2.31e-04 CGACTGTAGG ATGGCAAC CGTCTCGCTC chr2L:16647833-16647953 5 2.31e-04 TAAA ATGGCAAC CTCCAGGACA chr2R:22075888-22076008 108 2.31e-04 ATTCATAGCG CTGCCAAC ACTGC chr2L:3030441-3030561 67 2.31e-04 CACTTTACAC GGGGCACC CTGTAAGGGA chrX:2061296-2061416 99 2.71e-04 AATGGCCGAG GTGCCAGC ACTGACtgtg chr4:406950-407070 86 2.71e-04 TTTCCCACAG AGGGCGCC TGTAGTGGTT chr3R:16834770-16834890 44 2.83e-04 CCAATGCACA AAGGCGAC ATCTGTTAGC chrX:8113525-8113645 87 3.26e-04 ACTATATAGC CAGCCAGC ATgtttatag chr2L:1980742-1980862 102 3.26e-04 CGCAGGTGGC AAGGCAGC GATAGATCGG chrX:11081377-11081497 60 3.45e-04 CCTTAATCAT GAGCCACC CAACTTCCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGGCRVC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:6264570-6264690 3e-06 31_[+1]_81 chrX:18517552-18517672 5.9e-06 71_[+1]_41 chr2R:16800180-16800300 8.9e-06 111_[+1]_1 chr3L:10899338-10899458 8.9e-06 40_[+1]_72 chrX:6110035-6110155 8.9e-06 67_[+1]_45 chr2L:1362360-1362480 8.9e-06 43_[+1]_69 chr3R:24582844-24582964 1.9e-05 61_[+1]_51 chrX:9584821-9584941 1.9e-05 90_[+1]_22 chr3R:31060367-31060487 1.9e-05 64_[+1]_48 chr2L:12005473-12005593 1.9e-05 17_[+1]_95 chr2R:24046806-24046926 2.4e-05 8_[+1]_104 chr3R:31134155-31134275 2.4e-05 31_[+1]_81 chr2L:12424682-12424802 2.9e-05 71_[+1]_41 chrX:1322377-1322497 2.9e-05 53_[+1]_59 chrX:3968809-3968929 2.9e-05 106_[+1]_6 chr3L:21196717-21196837 2.9e-05 75_[+1]_37 chrX:7710937-7711057 5.7e-05 76_[+1]_36 chr2R:20906652-20906772 5.7e-05 102_[+1]_10 chr3L:9898576-9898696 5.7e-05 6_[+1]_106 chrX:5312137-5312257 5.7e-05 61_[+1]_51 chrX:15063828-15063948 5.7e-05 48_[+1]_64 chr2L:6465631-6465751 5.7e-05 46_[+1]_66 chr2L:3472379-3472499 5.7e-05 85_[+1]_27 chr3L:19132748-19132868 5.7e-05 103_[+1]_9 chr3L:8763210-8763330 5.7e-05 25_[+1]_87 chr3L:22276775-22276895 5.7e-05 110_[+1]_2 chr3L:3789256-3789376 6e-05 67_[+1]_45 chr2L:6070923-6071043 7.1e-05 89_[+1]_23 chr2L:6047913-6048033 7.1e-05 102_[+1]_10 chr3R:26888455-26888575 7.1e-05 98_[+1]_14 chr3R:17655162-17655282 7.6e-05 28_[+1]_84 chr3R:16748684-16748804 9.7e-05 65_[+1]_47 chr3R:21373521-21373641 9.7e-05 101_[+1]_11 chr2L:20464482-20464602 9.7e-05 43_[+1]_69 chr3L:15161679-15161799 9.7e-05 86_[+1]_26 chr3L:18784680-18784800 0.00012 79_[+1]_33 chr2R:12337684-12337804 0.00012 97_[+1]_15 chr3R:21263306-21263426 0.00012 10_[+1]_102 chr2R:15330657-15330777 0.00013 29_[+1]_83 chr3L:21640841-21640961 0.00016 19_[+1]_93 chr3L:21841324-21841444 0.00016 104_[+1]_8 chr3R:5470777-5470897 0.00016 101_[+1]_11 chr3R:29039832-29039952 0.00018 96_[+1]_16 chr3L:12526961-12527081 0.00018 73_[+1]_39 chr3L:8063584-8063704 0.00019 7_[+1]_105 chr2R:13429195-13429315 0.0002 91_[+1]_21 chr2R:7525701-7525821 0.00023 57_[+1]_55 chr3R:23921268-23921388 0.00023 89_[+1]_23 chr3L:12653255-12653375 0.00023 101_[+1]_11 chr2L:16647833-16647953 0.00023 4_[+1]_108 chr2R:22075888-22076008 0.00023 107_[+1]_5 chr2L:3030441-3030561 0.00023 66_[+1]_46 chrX:2061296-2061416 0.00027 98_[+1]_14 chr4:406950-407070 0.00027 85_[+1]_27 chr3R:16834770-16834890 0.00028 43_[+1]_69 chrX:8113525-8113645 0.00033 86_[+1]_26 chr2L:1980742-1980862 0.00033 101_[+1]_11 chrX:11081377-11081497 0.00035 59_[+1]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGGCRVC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STGGCRVC width=8 seqs=58 chr3L:6264570-6264690 ( 32) CTGGCGCC 1 chrX:18517552-18517672 ( 72) CTGGCGGC 1 chr2R:16800180-16800300 ( 112) GTGGCGCC 1 chr3L:10899338-10899458 ( 41) GTGGCGCC 1 chrX:6110035-6110155 ( 68) GTGGCGCC 1 chr2L:1362360-1362480 ( 44) GTGGCGCC 1 chr3R:24582844-24582964 ( 62) CTGGCGAC 1 chrX:9584821-9584941 ( 91) CTGGCGAC 1 chr3R:31060367-31060487 ( 65) CTGGCGAC 1 chr2L:12005473-12005593 ( 18) CTGGCGAC 1 chr2R:24046806-24046926 ( 9) CAGGCGCC 1 chr3R:31134155-31134275 ( 32) CAGGCGCC 1 chr2L:12424682-12424802 ( 72) CTGGCAGC 1 chrX:1322377-1322497 ( 54) CTGGCAGC 1 chrX:3968809-3968929 ( 107) CTGGCAGC 1 chr3L:21196717-21196837 ( 76) CTGGCAGC 1 chrX:7710937-7711057 ( 77) ATGGCGCC 1 chr2R:20906652-20906772 ( 103) ATGGCGCC 1 chr3L:9898576-9898696 ( 7) CTGGCAAC 1 chrX:5312137-5312257 ( 62) CTGGCAAC 1 chrX:15063828-15063948 ( 49) CTGGCAAC 1 chr2L:6465631-6465751 ( 47) CTGGCAAC 1 chr2L:3472379-3472499 ( 86) ATGGCGCC 1 chr3L:19132748-19132868 ( 104) CTGCCGCC 1 chr3L:8763210-8763330 ( 26) CTGCCGCC 1 chr3L:22276775-22276895 ( 111) CAGGCGGC 1 chr3L:3789256-3789376 ( 68) GAGGCGCC 1 chr2L:6070923-6071043 ( 90) GTGGCAGC 1 chr2L:6047913-6048033 ( 103) CAGGCACC 1 chr3R:26888455-26888575 ( 99) CAGGCACC 1 chr3R:17655162-17655282 ( 29) CAGGCGAC 1 chr3R:16748684-16748804 ( 66) GTGCCGCC 1 chr3R:21373521-21373641 ( 102) GTGGCAAC 1 chr2L:20464482-20464602 ( 44) GTGGCAAC 1 chr3L:15161679-15161799 ( 87) GTGGCAAC 1 chr3L:18784680-18784800 ( 80) CGGGCGGC 1 chr2R:12337684-12337804 ( 98) CTGCCACC 1 chr3R:21263306-21263426 ( 11) CGGGCGGC 1 chr2R:15330657-15330777 ( 30) GGGGCGCC 1 chr3L:21640841-21640961 ( 20) AAGGCGCC 1 chr3L:21841324-21841444 ( 105) AAGGCGCC 1 chr3R:5470777-5470897 ( 102) AAGGCGCC 1 chr3R:29039832-29039952 ( 97) CTGCCAGC 1 chr3L:12526961-12527081 ( 74) CTGCCAGC 1 chr3L:8063584-8063704 ( 8) GTGCCACC 1 chr2R:13429195-13429315 ( 92) GTGCCGAC 1 chr2R:7525701-7525821 ( 58) CTGCCAAC 1 chr3R:23921268-23921388 ( 90) AAGGCGGC 1 chr3L:12653255-12653375 ( 102) ATGGCAAC 1 chr2L:16647833-16647953 ( 5) ATGGCAAC 1 chr2R:22075888-22076008 ( 108) CTGCCAAC 1 chr2L:3030441-3030561 ( 67) GGGGCACC 1 chrX:2061296-2061416 ( 99) GTGCCAGC 1 chr4:406950-407070 ( 86) AGGGCGCC 1 chr3R:16834770-16834890 ( 44) AAGGCGAC 1 chrX:8113525-8113645 ( 87) CAGCCAGC 1 chr2L:1980742-1980862 ( 102) AAGGCAGC 1 chrX:11081377-11081497 ( 60) GAGCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGGCRVC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8977 E= 3.2e-010 -57 141 55 -1250 -25 -1250 -113 108 -1250 -1250 241 -1250 -1250 20 204 -1250 -1250 236 -1250 -1250 60 -1250 150 -1250 1 114 46 -1250 -1250 236 -1250 -1250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGGCRVC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 3.2e-010 0.206897 0.517241 0.275862 0.000000 0.258621 0.000000 0.086207 0.655172 0.000000 0.000000 1.000000 0.000000 0.000000 0.224138 0.775862 0.000000 0.000000 1.000000 0.000000 0.000000 0.465517 0.000000 0.534483 0.000000 0.310345 0.431034 0.258621 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGGCRVC MEME-1 regular expression -------------------------------------------------------------------------------- [CGA][TA]G[GC]C[GA][CAG]C -------------------------------------------------------------------------------- Time 7.66 secs. ******************************************************************************** ******************************************************************************** MOTIF CAACACTG MEME-2 width = 8 sites = 17 llr = 175 E-value = 1.8e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAACACTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :6a:a::: pos.-specific C 92:a:a:: probability G 1::::::a matrix T :1::::a: bits 2.4 * * * 2.2 * * * 1.9 * * * * 1.7 * ****** Relative 1.4 * ****** Entropy 1.2 * ****** (14.9 bits) 1.0 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAACACTG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9110675-9110795 107 1.25e-05 CGGAATTAAC CAACACTG ACGATA chr3L:4313427-4313547 62 1.25e-05 GTATGCCTTA CAACACTG CCTGCATCAG chr3R:29039832-29039952 47 1.25e-05 GTATGTTTAC CAACACTG CGTTCGTTAG chr3L:21841324-21841444 82 1.25e-05 GTGCACCTTA CAACACTG TCCATAGCTA chr3R:17072661-17072781 61 1.25e-05 GCGTGCTAGC CAACACTG CCAGTGTTGC chr2L:14094780-14094900 81 1.25e-05 TCGTGCTAGC CAACACTG ATATCAGTGC chrX:3968809-3968929 76 1.25e-05 CCAAAATACC CAACACTG GTTAACTGCT chr2R:12337684-12337804 74 1.25e-05 CCACATTAGG CAACACTG CATTTCACAG chr3L:4186828-4186948 92 1.25e-05 GAATCACTTT CAACACTG GTCAACAGTT chr3L:1035118-1035238 69 1.25e-05 CTCGCTGATA CAACACTG TCTGTTGTTC chr2R:19292107-19292227 78 1.25e-05 CGGCGCTTCA CAACACTG AAACACCACT chr3L:21640841-21640961 94 2.05e-05 AAGTGCTGCA CCACACTG CTATAAACAT chr2R:17564764-17564884 89 2.05e-05 TCGACGTTCA CCACACTG GCAATAGTTG chr3L:11720842-11720962 75 2.05e-05 AAAGTTGCGA CCACACTG AACTACAGCC chrX:20507859-20507979 5 3.31e-05 GTCC CTACACTG AGAGAAAGGG chr2R:7241705-7241825 5 3.31e-05 TTTT CTACACTG AAAGAAAACG chr2R:18776957-18777077 10 5.30e-05 CTGTCAGAA GCACACTG CTCCCTGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9110675-9110795 1.3e-05 106_[+2]_6 chr3L:4313427-4313547 1.3e-05 61_[+2]_51 chr3R:29039832-29039952 1.3e-05 46_[+2]_66 chr3L:21841324-21841444 1.3e-05 81_[+2]_31 chr3R:17072661-17072781 1.3e-05 60_[+2]_52 chr2L:14094780-14094900 1.3e-05 80_[+2]_32 chrX:3968809-3968929 1.3e-05 75_[+2]_37 chr2R:12337684-12337804 1.3e-05 73_[+2]_39 chr3L:4186828-4186948 1.3e-05 91_[+2]_21 chr3L:1035118-1035238 1.3e-05 68_[+2]_44 chr2R:19292107-19292227 1.3e-05 77_[+2]_35 chr3L:21640841-21640961 2e-05 93_[+2]_19 chr2R:17564764-17564884 2e-05 88_[+2]_24 chr3L:11720842-11720962 2e-05 74_[+2]_38 chrX:20507859-20507979 3.3e-05 4_[+2]_108 chr2R:7241705-7241825 3.3e-05 4_[+2]_108 chr2R:18776957-18777077 5.3e-05 9_[+2]_103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAACACTG width=8 seqs=17 chr2R:9110675-9110795 ( 107) CAACACTG 1 chr3L:4313427-4313547 ( 62) CAACACTG 1 chr3R:29039832-29039952 ( 47) CAACACTG 1 chr3L:21841324-21841444 ( 82) CAACACTG 1 chr3R:17072661-17072781 ( 61) CAACACTG 1 chr2L:14094780-14094900 ( 81) CAACACTG 1 chrX:3968809-3968929 ( 76) CAACACTG 1 chr2R:12337684-12337804 ( 74) CAACACTG 1 chr3L:4186828-4186948 ( 92) CAACACTG 1 chr3L:1035118-1035238 ( 69) CAACACTG 1 chr2R:19292107-19292227 ( 78) CAACACTG 1 chr3L:21640841-21640961 ( 94) CCACACTG 1 chr2R:17564764-17564884 ( 89) CCACACTG 1 chr3L:11720842-11720962 ( 75) CCACACTG 1 chrX:20507859-20507979 ( 5) CTACACTG 1 chr2R:7241705-7241825 ( 5) CTACACTG 1 chr2R:18776957-18777077 ( 10) GCACACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.9265 E= 1.8e-001 -1073 227 -168 -1073 107 27 -1073 -139 170 -1073 -1073 -1073 -1073 236 -1073 -1073 170 -1073 -1073 -1073 -1073 236 -1073 -1073 -1073 -1073 -1073 169 -1073 -1073 241 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.8e-001 0.000000 0.941176 0.058824 0.000000 0.647059 0.235294 0.000000 0.117647 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-2 regular expression -------------------------------------------------------------------------------- C[AC]ACACTG -------------------------------------------------------------------------------- Time 13.98 secs. ******************************************************************************** ******************************************************************************** MOTIF AGATGGCG MEME-3 width = 8 sites = 13 llr = 135 E-value = 8.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGATGGCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:a::::: pos.-specific C :3:2::a: probability G :7:2aa:a matrix T :::5:::: bits 2.4 **** 2.2 **** 1.9 **** 1.7 * * **** Relative 1.4 *** **** Entropy 1.2 *** **** (15.0 bits) 1.0 *** **** 0.7 *** **** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGATGGCG consensus C C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16748684-16748804 47 7.25e-06 CCGAATCCAT AGATGGCG CATGCAACTC chrX:20507859-20507979 62 7.25e-06 AGAGGAGGTG AGATGGCG AGAAAGGTTT chrX:7710937-7711057 29 7.25e-06 CTTAAGTCAT AGATGGCG CTCGCTGTAA chr2L:3472379-3472499 36 7.25e-06 CTTCAGATAC AGATGGCG CTCACGCCAA chr3L:12526961-12527081 56 7.25e-06 ACTGACCGCC AGATGGCG CGTTTCAATT chr2L:20464482-20464602 59 7.25e-06 AACAAACGCC AGATGGCG TTAAAGGCAC chr3R:5300740-5300860 20 1.63e-05 TGGCCCTAAT AGAGGGCG TGGGCATTGT chr2R:15371490-15371610 87 1.63e-05 GAAATACGCT AGAGGGCG CTTTCGTCAA chrX:18517552-18517672 60 1.63e-05 GCAACGTTCC AGACGGCG CCCTCTGGCG chr2L:1629684-1629804 94 2.37e-05 CACTTGCAAC ACATGGCG TATGATTAAT chr3L:4186828-4186948 50 3.30e-05 CAAAATCCTC ACACGGCG CCTGTTGCCC chr3R:26230226-26230346 95 3.30e-05 CGTGATAAAT ACACGGCG AACAAAATTG chr3R:20634676-20634796 59 3.30e-05 CCTGTTGAAC ACAGGGCG TTCTAGGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16748684-16748804 7.2e-06 46_[+3]_66 chrX:20507859-20507979 7.2e-06 61_[+3]_51 chrX:7710937-7711057 7.2e-06 28_[+3]_84 chr2L:3472379-3472499 7.2e-06 35_[+3]_77 chr3L:12526961-12527081 7.2e-06 55_[+3]_57 chr2L:20464482-20464602 7.2e-06 58_[+3]_54 chr3R:5300740-5300860 1.6e-05 19_[+3]_93 chr2R:15371490-15371610 1.6e-05 86_[+3]_26 chrX:18517552-18517672 1.6e-05 59_[+3]_53 chr2L:1629684-1629804 2.4e-05 93_[+3]_19 chr3L:4186828-4186948 3.3e-05 49_[+3]_63 chr3R:26230226-26230346 3.3e-05 94_[+3]_18 chr3R:20634676-20634796 3.3e-05 58_[+3]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGATGGCG width=8 seqs=13 chr3R:16748684-16748804 ( 47) AGATGGCG 1 chrX:20507859-20507979 ( 62) AGATGGCG 1 chrX:7710937-7711057 ( 29) AGATGGCG 1 chr2L:3472379-3472499 ( 36) AGATGGCG 1 chr3L:12526961-12527081 ( 56) AGATGGCG 1 chr2L:20464482-20464602 ( 59) AGATGGCG 1 chr3R:5300740-5300860 ( 20) AGAGGGCG 1 chr2R:15371490-15371610 ( 87) AGAGGGCG 1 chrX:18517552-18517672 ( 60) AGACGGCG 1 chr2L:1629684-1629804 ( 94) ACATGGCG 1 chr3L:4186828-4186948 ( 50) ACACGGCG 1 chr3R:26230226-26230346 ( 95) ACACGGCG 1 chr3R:20634676-20634796 ( 59) ACAGGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8403 E= 8.6e+001 170 -1035 -1035 -1035 -1035 66 187 -1035 170 -1035 -1035 -1035 -1035 24 29 80 -1035 -1035 241 -1035 -1035 -1035 241 -1035 -1035 236 -1035 -1035 -1035 -1035 241 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 8.6e+001 1.000000 0.000000 0.000000 0.000000 0.000000 0.307692 0.692308 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.230769 0.230769 0.538462 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGCG MEME-3 regular expression -------------------------------------------------------------------------------- A[GC]A[TCG]GGCG -------------------------------------------------------------------------------- Time 20.28 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCADCT MEME-4 width = 8 sites = 28 llr = 252 E-value = 7.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCADCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::83:: pos.-specific C a:7a31a2 probability G :a3::2:: matrix T :::::4:8 bits 2.4 ** * * 2.2 ** * * 1.9 ** * * 1.7 ** * * Relative 1.4 **** * Entropy 1.2 **** * (13.0 bits) 1.0 ***** ** 0.7 ***** ** 0.5 ***** ** 0.2 ***** ** 0.0 -------- Multilevel CGCCATCT consensus G CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCADCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23921268-23921388 65 8.01e-06 CTGGTTTATC CGCCATCT CACGCACAAG chr2L:12424682-12424802 30 8.01e-06 TTTATTCTTG CGCCATCT ATGTACTTGC chr3R:16834770-16834890 99 8.01e-06 AGCACATTGG CGCCATCT GTATTCCGTT chr2L:7258224-7258344 90 8.01e-06 GCGCCCAGTG CGCCATCT AGCAGAACTT chr2R:18514025-18514145 46 8.01e-06 GCGTTACAAT CGCCATCT GTCGGGCGGT chr3R:20948113-20948233 18 8.01e-06 GTTTAACGAA CGCCATCT ACACTTCGTT chr2L:1362360-1362480 73 8.01e-06 CTTCTGCCAG CGCCATCT GTTGAGCGCT chr2R:8900181-8900301 46 1.60e-05 TGACGTAAAA CGCCAACT TATCGATACT chr3R:12350623-12350743 25 2.59e-05 GGAATAAGCG CGCCACCT ACTGGCCGCA chr2R:16800180-16800300 41 2.59e-05 ACTGAACTAG CGCCACCT GAGACTGCAT chr2R:15330657-15330777 67 4.38e-05 TCCGCTCTCC CGCCCACT TCCGTTTCCG chr3L:19861328-19861448 29 4.38e-05 atcgcaagat cgcccact gcgataagtt chr3R:29039832-29039952 89 5.47e-05 GTGGACAGTA CGGCAACT CTGCCAGCTG chr3R:9370561-9370681 81 5.47e-05 CTTTGCTAAA CGGCAACT CTTTCATGTT chr2L:13371003-13371123 77 5.47e-05 TTTTAGAGAA CGGCAACT CTGAAATGAA chr3L:14028591-14028711 9 5.47e-05 CAATTTGC CGGCAACT TTTATGGCGC chr3R:25123369-25123489 9 5.47e-05 TATTGAAC CGGCAACT ATCGATTGTC chr3R:11809789-11809909 91 6.45e-05 TAAATTTTCA CGCCATCC CCCATAAAAC chr3R:21263306-21263426 55 6.45e-05 GCCTACTTGC CGGCAGCT CAAATAAAAA chr2R:7249147-7249267 4 6.95e-05 GCT CGCCAACC GAAAGCATTC chr3L:6743139-6743259 46 7.58e-05 TTCGTCAACA CGCCAGCC ATCGATGGTT chr3L:19132748-19132868 31 7.58e-05 AGCTGTAGAG CGCCCCCT GGCGGTGGGA chr3L:15161679-15161799 37 7.58e-05 TTTTAGCTAC CGCCCCCT ATCGGCTTTC chr3R:12016975-12017095 49 9.99e-05 GCACAATACT CGGCCGCT CTGGTTACCT chr2R:18776957-18777077 60 9.99e-05 CTCATTCCAG CGGCCGCT CGAGGGTTGT chr2R:5984266-5984386 25 9.99e-05 CCAAATCTTG CGCCCTCC GTACGCAGTA chrX:1322377-1322497 102 1.21e-04 TCTAGCGATC CGGCAGCC CCGTTTTAAA chrX:4849539-4849659 39 1.39e-04 AGTGTTCTCG CGCCATCG GTATAGTTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCADCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23921268-23921388 8e-06 64_[+4]_48 chr2L:12424682-12424802 8e-06 29_[+4]_83 chr3R:16834770-16834890 8e-06 98_[+4]_14 chr2L:7258224-7258344 8e-06 89_[+4]_23 chr2R:18514025-18514145 8e-06 45_[+4]_67 chr3R:20948113-20948233 8e-06 17_[+4]_95 chr2L:1362360-1362480 8e-06 72_[+4]_40 chr2R:8900181-8900301 1.6e-05 45_[+4]_67 chr3R:12350623-12350743 2.6e-05 24_[+4]_88 chr2R:16800180-16800300 2.6e-05 40_[+4]_72 chr2R:15330657-15330777 4.4e-05 66_[+4]_46 chr3L:19861328-19861448 4.4e-05 28_[+4]_84 chr3R:29039832-29039952 5.5e-05 88_[+4]_24 chr3R:9370561-9370681 5.5e-05 80_[+4]_32 chr2L:13371003-13371123 5.5e-05 76_[+4]_36 chr3L:14028591-14028711 5.5e-05 8_[+4]_104 chr3R:25123369-25123489 5.5e-05 8_[+4]_104 chr3R:11809789-11809909 6.4e-05 90_[+4]_22 chr3R:21263306-21263426 6.4e-05 54_[+4]_58 chr2R:7249147-7249267 6.9e-05 3_[+4]_109 chr3L:6743139-6743259 7.6e-05 45_[+4]_67 chr3L:19132748-19132868 7.6e-05 30_[+4]_82 chr3L:15161679-15161799 7.6e-05 36_[+4]_76 chr3R:12016975-12017095 0.0001 48_[+4]_64 chr2R:18776957-18777077 0.0001 59_[+4]_53 chr2R:5984266-5984386 0.0001 24_[+4]_88 chrX:1322377-1322497 0.00012 101_[+4]_11 chrX:4849539-4849659 0.00014 38_[+4]_74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCADCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCADCT width=8 seqs=28 chr3R:23921268-23921388 ( 65) CGCCATCT 1 chr2L:12424682-12424802 ( 30) CGCCATCT 1 chr3R:16834770-16834890 ( 99) CGCCATCT 1 chr2L:7258224-7258344 ( 90) CGCCATCT 1 chr2R:18514025-18514145 ( 46) CGCCATCT 1 chr3R:20948113-20948233 ( 18) CGCCATCT 1 chr2L:1362360-1362480 ( 73) CGCCATCT 1 chr2R:8900181-8900301 ( 46) CGCCAACT 1 chr3R:12350623-12350743 ( 25) CGCCACCT 1 chr2R:16800180-16800300 ( 41) CGCCACCT 1 chr2R:15330657-15330777 ( 67) CGCCCACT 1 chr3L:19861328-19861448 ( 29) CGCCCACT 1 chr3R:29039832-29039952 ( 89) CGGCAACT 1 chr3R:9370561-9370681 ( 81) CGGCAACT 1 chr2L:13371003-13371123 ( 77) CGGCAACT 1 chr3L:14028591-14028711 ( 9) CGGCAACT 1 chr3R:25123369-25123489 ( 9) CGGCAACT 1 chr3R:11809789-11809909 ( 91) CGCCATCC 1 chr3R:21263306-21263426 ( 55) CGGCAGCT 1 chr2R:7249147-7249267 ( 4) CGCCAACC 1 chr3L:6743139-6743259 ( 46) CGCCAGCC 1 chr3L:19132748-19132868 ( 31) CGCCCCCT 1 chr3L:15161679-15161799 ( 37) CGCCCCCT 1 chr3R:12016975-12017095 ( 49) CGGCCGCT 1 chr2R:18776957-18777077 ( 60) CGGCCGCT 1 chr2R:5984266-5984386 ( 25) CGCCCTCC 1 chrX:1322377-1322497 ( 102) CGGCAGCC 1 chrX:4849539-4849659 ( 39) CGCCATCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCADCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5834 E= 7.9e+000 -1145 236 -1145 -1145 -1145 -1145 241 -1145 -1145 180 77 -1145 -1145 236 -1145 -1145 129 36 -1145 -1145 7 -45 -8 21 -1145 236 -1145 -1145 -1145 -13 -240 135 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCADCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 7.9e+000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.678571 0.321429 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.321429 0.142857 0.178571 0.357143 0.000000 1.000000 0.000000 0.000000 0.000000 0.178571 0.035714 0.785714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCADCT MEME-4 regular expression -------------------------------------------------------------------------------- CG[CG]C[AC][TA]CT -------------------------------------------------------------------------------- Time 26.58 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGACC MEME-5 width = 8 sites = 7 llr = 83 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGACC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C ::::::aa probability G a:a:a::: matrix T :a:a:::: bits 2.4 * * * ** 2.2 * * * ** 1.9 * * * ** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13198319-13198439 15 7.53e-06 ACGACTGTAA GTGTGACC AGATTGCAGC chr3L:12504133-12504253 94 7.53e-06 CTCTCGGCCA GTGTGACC GTTCGACCAC chr2R:16571159-16571279 80 7.53e-06 ATTTAAAGCA GTGTGACC GCGCAAACGT chr3R:29859904-29860024 6 7.53e-06 GAGGA GTGTGACC GCAACATAAT chr2R:15371490-15371610 17 7.53e-06 TTAGGTTGCT GTGTGACC AGATTATATG chr3L:11720842-11720962 19 7.53e-06 CCGCTGTTAA GTGTGACC AAAATCAATT chr3R:13320015-13320135 29 7.53e-06 CTTTCTGGCT GTGTGACC AATGAAATAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13198319-13198439 7.5e-06 14_[+5]_98 chr3L:12504133-12504253 7.5e-06 93_[+5]_19 chr2R:16571159-16571279 7.5e-06 79_[+5]_33 chr3R:29859904-29860024 7.5e-06 5_[+5]_107 chr2R:15371490-15371610 7.5e-06 16_[+5]_96 chr3L:11720842-11720962 7.5e-06 18_[+5]_94 chr3R:13320015-13320135 7.5e-06 28_[+5]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGACC width=8 seqs=7 chr2R:13198319-13198439 ( 15) GTGTGACC 1 chr3L:12504133-12504253 ( 94) GTGTGACC 1 chr2R:16571159-16571279 ( 80) GTGTGACC 1 chr3R:29859904-29860024 ( 6) GTGTGACC 1 chr2R:15371490-15371610 ( 17) GTGTGACC 1 chr3L:11720842-11720962 ( 19) GTGTGACC 1 chr3R:13320015-13320135 ( 29) GTGTGACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 1.5e+003 -945 -945 240 -945 -945 -945 -945 169 -945 -945 240 -945 -945 -945 -945 169 -945 -945 240 -945 170 -945 -945 -945 -945 236 -945 -945 -945 236 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.5e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-5 regular expression -------------------------------------------------------------------------------- GTGTGACC -------------------------------------------------------------------------------- Time 32.78 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:12005473-12005593 1.03e-02 17_[+1(1.85e-05)]_95 chr2L:1362360-1362480 1.99e-04 47_[+4(8.01e-06)]_17_[+4(8.01e-06)]_\ 40 chr3R:11338423-11338543 1.65e-01 120 chr3L:22276775-22276895 1.06e-02 110_[+1(5.69e-05)]_2 chr3R:23803795-23803915 2.98e-01 120 chrX:4849539-4849659 1.60e-01 120 chr3R:13320015-13320135 2.31e-02 28_[+5(7.53e-06)]_84 chr3R:20634676-20634796 5.11e-03 58_[+3(3.30e-05)]_54 chr2L:4403148-4403268 5.67e-01 120 chr3L:27267159-27267279 6.30e-02 120 chr3L:8741346-8741466 1.27e-01 120 chr2L:6357081-6357201 4.65e-01 120 chr3R:7779764-7779884 9.36e-01 120 chr3L:8763210-8763330 5.08e-03 25_[+1(5.69e-05)]_87 chr3R:8009271-8009391 2.45e-01 120 chr2L:13905458-13905578 8.78e-01 120 chr3R:23921825-23921945 4.74e-01 120 chr2R:16610062-16610182 8.24e-01 120 chr3R:31134155-31134275 9.13e-04 35_[+4(8.01e-06)]_77 chr3R:21263306-21263426 3.87e-03 54_[+4(6.45e-05)]_58 chr3L:19834278-19834398 4.51e-01 120 chr3R:31810303-31810423 6.10e-01 120 chrX:10573673-10573793 3.04e-01 120 chr3R:25123369-25123489 4.18e-02 8_[+4(5.47e-05)]_104 chr2R:19292107-19292227 1.72e-02 77_[+2(1.25e-05)]_35 chr3L:15161679-15161799 1.44e-02 36_[+4(7.58e-05)]_42_[+1(9.68e-05)]_\ 26 chr3L:3770966-3771086 4.18e-01 120 chr2L:3030441-3030561 5.05e-03 120 chr2L:20464482-20464602 9.22e-04 43_[+1(9.68e-05)]_7_[+3(7.25e-06)]_\ 54 chr3L:19861328-19861448 9.17e-03 28_[+4(4.38e-05)]_84 chrX:14234161-14234281 7.77e-02 120 chr3L:6609344-6609464 4.89e-01 120 chr3L:630192-630312 6.74e-01 120 chr3L:1035118-1035238 2.00e-03 68_[+2(1.25e-05)]_44 chr3L:14028591-14028711 1.10e-03 8_[+4(5.47e-05)]_104 chrX:20434689-20434809 1.99e-01 120 chr3R:16355548-16355668 3.57e-02 120 chr2L:18150717-18150837 4.51e-01 120 chrX:13088181-13088301 9.68e-01 120 chr2R:9903429-9903549 2.44e-01 120 chr3L:19132748-19132868 3.85e-03 30_[+4(7.58e-05)]_65_[+1(5.69e-05)]_\ 9 chr3L:21321904-21322024 9.39e-01 120 chr2R:12870161-12870281 1.03e-01 120 chr2R:12218923-12219043 9.09e-01 120 chr2R:7241705-7241825 2.39e-01 4_[+2(3.31e-05)]_108 chrX:2947558-2947678 5.89e-01 120 chr3L:6752853-6752973 8.21e-01 120 chr2R:7249147-7249267 7.24e-02 3_[+4(6.95e-05)]_109 chrX:17696801-17696921 1.00e+00 120 chr2R:24046806-24046926 1.21e-02 8_[+1(2.43e-05)]_104 chr3R:15250659-15250779 1.60e-01 120 chr2L:3748830-3748950 9.75e-02 120 chr3L:12526961-12527081 8.83e-04 55_[+3(7.25e-06)]_57 chr3L:19961919-19962039 9.45e-01 120 chrX:6110035-6110155 1.47e-04 67_[+1(8.86e-06)]_45 chr3L:5359406-5359526 2.28e-01 120 chr2R:5984266-5984386 6.98e-02 24_[+4(9.99e-05)]_88 chrX:14169220-14169340 5.83e-01 120 chr2L:3472379-3472499 1.65e-04 35_[+3(7.25e-06)]_40_[+3(7.25e-06)]_\ 29 chrX:12470691-12470811 1.00e+00 120 chr3R:17655162-17655282 2.34e-02 28_[+1(7.59e-05)]_84 chr3L:11720842-11720962 3.00e-04 18_[+5(7.53e-06)]_48_[+2(2.05e-05)]_\ 38 chr3R:29068952-29069072 8.20e-01 120 chr3L:4413162-4413282 9.83e-01 120 chr3L:3789256-3789376 4.32e-02 67_[+1(5.98e-05)]_45 chr3R:28599632-28599752 6.04e-01 120 chr2L:9614026-9614146 1.41e-01 120 chr3L:3814647-3814767 3.14e-01 120 chr2L:16519760-16519880 9.82e-01 120 chr2L:1629684-1629804 2.73e-02 93_[+3(2.37e-05)]_19 chrX:9193782-9193902 1.27e-01 120 chr3R:8354520-8354640 4.35e-01 120 chr3R:31060367-31060487 5.47e-03 64_[+1(1.85e-05)]_48 chr2L:6465631-6465751 3.35e-02 46_[+1(5.69e-05)]_66 chrX:1270708-1270828 5.40e-01 120 chr2L:1837822-1837942 7.51e-01 120 chr3R:9430567-9430687 4.66e-01 120 chr3L:10899338-10899458 9.58e-05 40_[+1(8.86e-06)]_72 chrX:6255491-6255611 1.98e-01 120 chr2L:6956875-6956995 1.20e-01 120 chr3L:627873-627993 5.43e-01 120 chrX:18517552-18517672 1.35e-05 59_[+3(1.63e-05)]_4_[+1(5.94e-06)]_\ 41 chr3R:20948113-20948233 1.81e-03 17_[+4(8.01e-06)]_44_[+4(2.59e-05)]_\ 43 chrX:15653666-15653786 2.79e-01 120 chr2L:21156217-21156337 4.56e-02 120 chr2R:6668928-6669048 1.00e+00 120 chr3R:23028645-23028765 6.16e-01 120 chr3L:5554527-5554647 6.65e-01 120 chr2L:12002962-12003082 9.12e-02 120 chr3R:5861298-5861418 9.26e-01 120 chr3L:5182395-5182515 1.00e+00 120 chr2R:22450479-22450599 6.94e-01 120 chr2R:15371490-15371610 1.12e-03 16_[+5(7.53e-06)]_62_[+3(1.63e-05)]_\ 26 chr2L:16547814-16547934 9.56e-01 120 chr3R:5300740-5300860 2.84e-03 19_[+3(1.63e-05)]_93 chr3R:27937883-27938003 4.87e-01 120 chr3L:4379035-4379155 6.71e-01 120 chr2L:3477343-3477463 9.29e-01 120 chr4:406950-407070 1.52e-02 83_[+3(1.63e-05)]_29 chr3R:26888455-26888575 6.14e-02 98_[+1(7.11e-05)]_14 chr3R:27988953-27989073 3.21e-01 120 chr3L:2845356-2845476 1.00e+00 120 chr2L:16703837-16703957 9.26e-01 120 chr3R:26230226-26230346 4.76e-02 94_[+3(3.30e-05)]_18 chr3R:28676993-28677113 7.67e-01 120 chr3L:22471734-22471854 9.02e-01 120 chrX:15063828-15063948 4.10e-03 48_[+1(5.69e-05)]_64 chr3R:26280488-26280608 9.42e-01 120 chr3L:4254664-4254784 6.16e-01 120 chr2L:13414975-13415095 4.03e-01 120 chr2R:17478600-17478720 6.24e-01 120 chr2L:13398889-13399009 1.37e-01 35_[+5(5.82e-05)]_77 chr3R:11809789-11809909 3.73e-01 90_[+4(6.45e-05)]_22 chr3R:9417933-9418053 4.80e-01 120 chrX:4262813-4262933 5.09e-01 120 chr3R:22464612-22464732 8.65e-01 120 chr2L:7395949-7396069 9.89e-01 120 chrX:5312137-5312257 1.05e-02 61_[+1(5.69e-05)]_51 chr3R:21993030-21993150 6.43e-01 120 chr2R:18514025-18514145 8.33e-03 45_[+4(8.01e-06)]_67 chrX:11081377-11081497 1.62e-01 120 chr3L:9898576-9898696 6.26e-02 6_[+1(5.69e-05)]_106 chr2R:22075888-22076008 1.69e-03 111_[+2(1.25e-05)]_1 chr2R:19389451-19389571 2.71e-01 120 chr2R:4516455-4516575 9.98e-01 120 chr3R:14657159-14657279 8.52e-01 120 chr3R:29859904-29860024 2.60e-02 5_[+5(7.53e-06)]_107 chr2L:10468544-10468664 5.67e-01 120 chr2L:4441005-4441125 8.98e-01 120 chrX:11451181-11451301 8.36e-01 120 chr2R:17564764-17564884 3.89e-02 88_[+2(2.05e-05)]_24 chr2L:5043911-5044031 7.80e-01 120 chr3L:15094962-15095082 1.17e-01 120 chr3R:21373521-21373641 3.63e-03 101_[+1(9.68e-05)]_11 chr3R:24206855-24206975 9.36e-01 120 chr2R:20906652-20906772 6.36e-05 100_[+3(7.25e-06)]_12 chrX:1880383-1880503 2.84e-01 120 chr3L:14190089-14190209 9.81e-01 120 chr3L:18782199-18782319 9.92e-01 120 chr2L:6047913-6048033 2.80e-03 102_[+1(7.11e-05)]_10 chrX:7710937-7711057 7.07e-04 28_[+3(7.25e-06)]_38_[+3(7.25e-06)]_\ 38 chr3R:31744161-31744281 2.45e-01 120 chrX:8542124-8542244 9.61e-01 120 chrX:20507859-20507979 5.51e-04 4_[+2(3.31e-05)]_49_[+3(7.25e-06)]_\ 51 chr2R:13008258-13008378 9.42e-01 120 chr2R:24657175-24657295 4.50e-01 120 chr2L:7258224-7258344 3.22e-02 89_[+4(8.01e-06)]_23 chr2R:11435226-11435346 4.05e-01 120 chr2L:1980742-1980862 1.43e-02 120 chrX:9584821-9584941 3.47e-03 90_[+1(1.85e-05)]_22 chr2R:18326609-18326729 8.79e-01 120 chrX:2061296-2061416 1.28e-02 120 chr2R:16800180-16800300 2.73e-05 40_[+4(2.59e-05)]_63_[+1(8.86e-06)]_\ 1 chr2L:20097267-20097387 8.97e-01 120 chr2L:5981630-5981750 1.34e-02 66_[+3(7.29e-05)]_46 chr3R:5470777-5470897 1.52e-01 120 chr2L:6070923-6071043 1.46e-02 89_[+1(7.11e-05)]_23 chrX:17176692-17176812 9.86e-01 120 chr3L:6264570-6264690 2.61e-04 31_[+1(3.02e-06)]_81 chr3R:24830047-24830167 5.39e-01 120 chr3L:19016529-19016649 9.35e-01 120 chr3L:4186828-4186948 7.00e-05 49_[+3(3.30e-05)]_34_[+2(1.25e-05)]_\ 21 chr2R:12337684-12337804 1.92e-03 73_[+2(1.25e-05)]_39 chr3L:21196717-21196837 3.91e-03 75_[+1(2.91e-05)]_37 chr2R:24943202-24943322 4.98e-01 120 chr2R:9109714-9109834 2.89e-01 120 chr3R:16834770-16834890 3.22e-03 98_[+4(8.01e-06)]_14 chr2L:13833150-13833270 7.87e-01 120 chr3L:3543046-3543166 5.92e-01 120 chr2R:11921147-11921267 9.76e-01 120 chr2L:8488863-8488983 6.58e-01 120 chr2R:5128331-5128451 4.92e-01 120 chr3R:4387623-4387743 1.50e-01 120 chr2L:16647833-16647953 4.99e-02 120 chr2L:13371003-13371123 1.12e-02 76_[+4(5.47e-05)]_36 chr2L:20811335-20811455 9.60e-01 120 chr2L:8738298-8738418 9.51e-01 120 chrX:3968809-3968929 1.94e-04 75_[+2(1.25e-05)]_23_[+1(2.91e-05)]_\ 6 chr3R:6468152-6468272 7.83e-01 120 chr3R:16748684-16748804 6.74e-06 46_[+3(7.25e-06)]_15_[+4(8.01e-06)]_\ 43 chr3R:12350623-12350743 8.19e-04 24_[+4(2.59e-05)]_88 chr2L:14094780-14094900 3.40e-02 80_[+2(1.25e-05)]_32 chr2R:18776957-18777077 7.93e-03 9_[+2(5.30e-05)]_42_[+4(9.99e-05)]_\ 53 chrX:1890083-1890203 1.31e-01 120 chr2R:21571317-21571437 1.25e-01 120 chrX:15297049-15297169 5.74e-01 120 chr2L:10858215-10858335 8.77e-01 120 chrX:19613623-19613743 5.16e-02 120 chr3L:12653255-12653375 6.70e-02 120 chr3L:13922358-13922478 1.15e-01 120 chr2L:16709739-16709859 1.00e+00 120 chr3R:17072661-17072781 1.65e-03 60_[+2(1.25e-05)]_52 chrX:4010969-4011089 9.78e-01 120 chr3R:5686499-5686619 4.27e-01 120 chr3L:15563030-15563150 5.80e-01 120 chr3R:22862138-22862258 8.18e-01 120 chr2R:16571159-16571279 5.81e-03 79_[+5(7.53e-06)]_33 chr3L:7249321-7249441 9.04e-01 120 chr3L:8446179-8446299 9.93e-01 120 chr4:404470-404590 6.28e-01 120 chr2L:19003070-19003190 8.12e-01 120 chr3L:21841324-21841444 5.37e-04 81_[+2(1.25e-05)]_31 chr3R:24010932-24011052 9.88e-01 120 chr3L:6059238-6059358 5.20e-01 120 chr3R:9370561-9370681 3.28e-02 80_[+4(5.47e-05)]_32 chr3L:18784680-18784800 2.36e-02 120 chr2R:21508007-21508127 7.80e-01 120 chr2R:8900181-8900301 4.93e-03 45_[+4(1.60e-05)]_67 chrX:16782205-16782325 8.80e-01 120 chr2R:23940199-23940319 9.32e-01 120 chr3L:21640841-21640961 1.68e-04 23_[+4(1.60e-05)]_62_[+2(2.05e-05)]_\ 19 chr3L:15921306-15921426 9.87e-01 120 chr3L:9127381-9127501 9.06e-01 120 chr2R:16170806-16170926 8.65e-01 120 chr3L:23095410-23095530 3.92e-01 120 chrX:1322377-1322497 1.71e-03 53_[+1(2.91e-05)]_59 chr2R:13429195-13429315 4.58e-01 120 chr3L:12504133-12504253 4.81e-02 93_[+5(7.53e-06)]_19 chr3L:20242368-20242488 9.96e-01 120 chr3R:12016975-12017095 1.50e-01 48_[+4(9.99e-05)]_64 chr3R:5998347-5998467 9.87e-01 120 chr3R:30796844-30796964 4.19e-01 120 chr2L:21787115-21787235 6.55e-01 120 chr3R:15837268-15837388 7.33e-01 120 chr2L:12424682-12424802 3.99e-04 29_[+4(8.01e-06)]_28_[+4(2.59e-05)]_\ 47 chr3R:24582844-24582964 2.21e-02 61_[+1(1.85e-05)]_51 chr3R:29039832-29039952 4.39e-05 46_[+2(1.25e-05)]_34_[+4(5.47e-05)]_\ 24 chr2R:15330657-15330777 8.53e-03 66_[+4(4.38e-05)]_46 chr2R:13198319-13198439 2.40e-03 14_[+5(7.53e-06)]_98 chrX:2087622-2087742 8.73e-02 120 chr3R:14347413-14347533 9.90e-01 120 chr2R:10559356-10559476 7.66e-01 120 chr3L:4313427-4313547 9.53e-03 61_[+2(1.25e-05)]_51 chr3R:21218969-21219089 3.73e-01 120 chr3R:23921268-23921388 1.89e-03 64_[+4(8.01e-06)]_48 chr2R:22531129-22531249 4.48e-01 120 chrX:8113525-8113645 2.39e-01 120 chr3R:8181519-8181639 2.77e-01 120 chr3L:6743139-6743259 8.22e-02 45_[+4(7.58e-05)]_67 chrX:21373904-21374024 1.39e-01 120 chr2R:17796706-17796826 9.26e-01 120 chr2R:9110675-9110795 2.15e-02 106_[+2(1.25e-05)]_6 chr2L:3813413-3813533 1.39e-01 120 chr3R:9053853-9053973 1.49e-01 120 chr3L:9847571-9847691 8.83e-01 120 chr2R:21664062-21664182 9.45e-01 120 chr2R:11427810-11427930 6.78e-01 120 chr2L:4847303-4847423 4.81e-01 120 chr2R:7525701-7525821 1.12e-01 120 chr3L:8063584-8063704 9.76e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************