******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Nf-YC.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:6111175-6111295 1.0000 120 chr3R:16632837-16632957 1.0000 120 chr2R:15671636-15671756 1.0000 120 chr4:423462-423582 1.0000 120 chr4:87418-87538 1.0000 120 chr2L:12689420-12689540 1.0000 120 chrX:2143053-2143173 1.0000 120 chr4:996100-996220 1.0000 120 chr3R:32072089-32072209 1.0000 120 chr3R:32071815-32071935 1.0000 120 chr2R:11703115-11703235 1.0000 120 chr4:418817-418937 1.0000 120 chrX:17405013-17405133 1.0000 120 chr3L:5891263-5891383 1.0000 120 chr3R:16013754-16013874 1.0000 120 chr3R:21388685-21388805 1.0000 120 chrX:19535549-19535669 1.0000 120 chr2R:16235188-16235308 1.0000 120 chr3R:29767863-29767983 1.0000 120 chrX:4618994-4619114 1.0000 120 chr2L:10354001-10354121 1.0000 120 chr3R:10542113-10542233 1.0000 120 chrX:2546392-2546512 1.0000 120 chr2R:5745303-5745423 1.0000 120 chr3L:5594984-5595104 1.0000 120 chr2L:10295435-10295555 1.0000 120 chrX:3808626-3808746 1.0000 120 chr3R:17029938-17030058 1.0000 120 chr2L:2400044-2400164 1.0000 120 chr3R:16983114-16983234 1.0000 120 chr3R:30030239-30030359 1.0000 120 chr2R:23644415-23644535 1.0000 120 chrX:15379187-15379307 1.0000 120 chrX:20559706-20559826 1.0000 120 chrX:610168-610288 1.0000 120 chr2R:8270800-8270920 1.0000 120 chr3L:21818854-21818974 1.0000 120 chr2L:9082890-9083010 1.0000 120 chr2L:8747625-8747745 1.0000 120 chrX:4600010-4600130 1.0000 120 chr2R:20424169-20424289 1.0000 120 chr3R:21456892-21457012 1.0000 120 chrX:2681736-2681856 1.0000 120 chrX:4647461-4647581 1.0000 120 chr4:999931-1000051 1.0000 120 chrX:17765041-17765161 1.0000 120 chrX:9765679-9765799 1.0000 120 chr3L:8646957-8647077 1.0000 120 chrX:1735330-1735450 1.0000 120 chr3R:11272805-11272925 1.0000 120 chr3R:24787907-24788027 1.0000 120 chr3R:18266810-18266930 1.0000 120 chr3R:14335637-14335757 1.0000 120 chrX:17412883-17413003 1.0000 120 chrX:3809218-3809338 1.0000 120 chrX:2037750-2037870 1.0000 120 chr3L:18860574-18860694 1.0000 120 chr3R:23296336-23296456 1.0000 120 chr3R:21077699-21077819 1.0000 120 chr3L:6117016-6117136 1.0000 120 chr2L:5362467-5362587 1.0000 120 chr2L:505130-505250 1.0000 120 chrX:5602441-5602561 1.0000 120 chr2R:23094380-23094500 1.0000 120 chr3R:19639322-19639442 1.0000 120 chr2L:13717263-13717383 1.0000 120 chr3R:21551688-21551808 1.0000 120 chr2L:18806141-18806261 1.0000 120 chr4:639057-639177 1.0000 120 chrX:4600209-4600329 1.0000 120 chr3L:5576629-5576749 1.0000 120 chr3L:5343020-5343140 1.0000 120 chr3R:16385708-16385828 1.0000 120 chr3R:11337204-11337324 1.0000 120 chr3R:21563449-21563569 1.0000 120 chr2L:3685616-3685736 1.0000 120 chr3R:16410833-16410953 1.0000 120 chr4:1097802-1097922 1.0000 120 chrX:2435044-2435164 1.0000 120 chr4:1098012-1098132 1.0000 120 chr2L:8817476-8817596 1.0000 120 chr2R:22867762-22867882 1.0000 120 chr2R:14477685-14477805 1.0000 120 chr3R:17599858-17599978 1.0000 120 chr2L:19765550-19765670 1.0000 120 chr3R:30928786-30928906 1.0000 120 chrX:12615865-12615985 1.0000 120 chr3R:30617586-30617706 1.0000 120 chr3R:30909155-30909275 1.0000 120 chr2L:19769831-19769951 1.0000 120 chr3R:16406726-16406846 1.0000 120 chr2R:15839074-15839194 1.0000 120 chr2L:11288443-11288563 1.0000 120 chr3R:21387723-21387843 1.0000 120 chrX:4526901-4527021 1.0000 120 chr2R:16162095-16162215 1.0000 120 chr3R:22053882-22054002 1.0000 120 chr2R:11563041-11563161 1.0000 120 chr2L:2391460-2391580 1.0000 120 chr2L:368825-368945 1.0000 120 chr3L:371367-371487 1.0000 120 chr3L:20563882-20564002 1.0000 120 chrX:17339820-17339940 1.0000 120 chr3R:17666630-17666750 1.0000 120 chrX:7768255-7768375 1.0000 120 chr2R:12249596-12249716 1.0000 120 chrX:3983137-3983257 1.0000 120 chr3L:4086022-4086142 1.0000 120 chr2L:319904-320024 1.0000 120 chr3L:8538507-8538627 1.0000 120 chr3L:6990437-6990557 1.0000 120 chr3R:4843083-4843203 1.0000 120 chr3R:13923766-13923886 1.0000 120 chr3R:21558034-21558154 1.0000 120 chr2R:13536607-13536727 1.0000 120 chr2L:20237017-20237137 1.0000 120 chr4:1101926-1102046 1.0000 120 chr3R:11343625-11343745 1.0000 120 chr2L:11229070-11229190 1.0000 120 chr3R:21534419-21534539 1.0000 120 chrX:7368526-7368646 1.0000 120 chrX:7568488-7568608 1.0000 120 chr3R:11306067-11306187 1.0000 120 chrX:18575289-18575409 1.0000 120 chr3R:16396693-16396813 1.0000 120 chr2L:6701-6821 1.0000 120 chr3L:5423708-5423828 1.0000 120 chr3R:23207394-23207514 1.0000 120 chr3L:1929099-1929219 1.0000 120 chr2R:10239193-10239313 1.0000 120 chr2R:8381444-8381564 1.0000 120 chr2R:9983586-9983706 1.0000 120 chr2R:20991796-20991916 1.0000 120 chr2L:9071220-9071340 1.0000 120 chr3L:12328852-12328972 1.0000 120 chrX:9288362-9288482 1.0000 120 chr3R:16427673-16427793 1.0000 120 chr2R:20933745-20933865 1.0000 120 chr2L:6532098-6532218 1.0000 120 chr2R:22239904-22240024 1.0000 120 chrX:2655172-2655292 1.0000 120 chr2L:8799116-8799236 1.0000 120 chr3L:4843584-4843704 1.0000 120 chr2R:18013926-18014046 1.0000 120 chr3R:20449619-20449739 1.0000 120 chr3R:11310829-11310949 1.0000 120 chr3L:12310592-12310712 1.0000 120 chr3R:4871773-4871893 1.0000 120 chr2L:18783506-18783626 1.0000 120 chrX:17812367-17812487 1.0000 120 chr2L:12569610-12569730 1.0000 120 chr2L:16877839-16877959 1.0000 120 chrX:9727435-9727555 1.0000 120 chr4:412060-412180 1.0000 120 chrX:12621751-12621871 1.0000 120 chr2L:8853185-8853305 1.0000 120 chr3R:11334418-11334538 1.0000 120 chr4:428372-428492 1.0000 120 chr3R:11371011-11371131 1.0000 120 chrX:2440326-2440446 1.0000 120 chr3L:21610689-21610809 1.0000 120 chr3R:8368708-8368828 1.0000 120 chr2R:25244690-25244810 1.0000 120 chr3R:13895766-13895886 1.0000 120 chrX:1535435-1535555 1.0000 120 chrX:7230762-7230882 1.0000 120 chr2R:23048345-23048465 1.0000 120 chr2L:19606437-19606557 1.0000 120 chrX:4089151-4089271 1.0000 120 chr3R:16678085-16678205 1.0000 120 chrX:5736444-5736564 1.0000 120 chr2R:20853756-20853876 1.0000 120 chr3R:13949721-13949841 1.0000 120 chr3R:18269941-18270061 1.0000 120 chr3R:28579655-28579775 1.0000 120 chr3L:12296264-12296384 1.0000 120 chr2R:23636597-23636717 1.0000 120 chr3L:10409640-10409760 1.0000 120 chr3R:21557218-21557338 1.0000 120 chr2R:14576520-14576640 1.0000 120 chrX:4521016-4521136 1.0000 120 chr2R:5749454-5749574 1.0000 120 chrX:7159370-7159490 1.0000 120 chr2R:21525989-21526109 1.0000 120 chr2L:8791833-8791953 1.0000 120 chr3R:20055945-20056065 1.0000 120 chr3R:16010067-16010187 1.0000 120 chr3L:12447202-12447322 1.0000 120 chr2L:15109271-15109391 1.0000 120 chrX:4554833-4554953 1.0000 120 chr2L:547315-547435 1.0000 120 chrX:589076-589196 1.0000 120 chr2R:14814347-14814467 1.0000 120 chr3R:22454586-22454706 1.0000 120 chr2L:19605502-19605622 1.0000 120 chr2R:8289100-8289220 1.0000 120 chr3L:6934952-6935072 1.0000 120 chr2L:20175109-20175229 1.0000 120 chrX:7124613-7124733 1.0000 120 chrX:7631465-7631585 1.0000 120 chr2L:8881219-8881339 1.0000 120 chr3L:21458871-21458991 1.0000 120 chrX:7161908-7162028 1.0000 120 chr3R:6853115-6853235 1.0000 120 chr3R:7136022-7136142 1.0000 120 chr3L:4159416-4159536 1.0000 120 chr2R:11565710-11565830 1.0000 120 chrX:4061671-4061791 1.0000 120 chrX:20709826-20709946 1.0000 120 chr3L:17503777-17503897 1.0000 120 chr3R:10364438-10364558 1.0000 120 chr3R:29758865-29758985 1.0000 120 chr3R:25189306-25189426 1.0000 120 chr3R:29520387-29520507 1.0000 120 chr2R:8029501-8029621 1.0000 120 chr3R:16784145-16784265 1.0000 120 chr2R:12460149-12460269 1.0000 120 chrX:19546805-19546925 1.0000 120 chr3R:4901352-4901472 1.0000 120 chr2L:3299774-3299894 1.0000 120 chr4:978639-978759 1.0000 120 chr3R:30026253-30026373 1.0000 120 chr2L:6547016-6547136 1.0000 120 chr2R:13013006-13013126 1.0000 120 chrX:16231426-16231546 1.0000 120 chr2L:2448660-2448780 1.0000 120 chr2R:20956205-20956325 1.0000 120 chrX:20330430-20330550 1.0000 120 chr3R:14096953-14097073 1.0000 120 chr2L:585405-585525 1.0000 120 chr2L:18794123-18794243 1.0000 120 chr2L:5652-5772 1.0000 120 chrX:12987094-12987214 1.0000 120 chr2L:1967473-1967593 1.0000 120 chr2R:25109775-25109895 1.0000 120 chr3R:18368730-18368850 1.0000 120 chr2R:14207969-14208089 1.0000 120 chr2L:21331658-21331778 1.0000 120 chr2R:14829313-14829433 1.0000 120 chr2R:23626388-23626508 1.0000 120 chr3R:18373038-18373158 1.0000 120 chr3L:22132833-22132953 1.0000 120 chrX:8696334-8696454 1.0000 120 chrX:20536510-20536630 1.0000 120 chr2R:9985236-9985356 1.0000 120 chr2R:8000303-8000423 1.0000 120 chr2L:1944832-1944952 1.0000 120 chr3R:11263700-11263820 1.0000 120 chr3L:14122166-14122286 1.0000 120 chr2R:17820917-17821037 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Nf-YC/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Nf-YC.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.242 C 0.257 G 0.254 T 0.248 Background letter frequencies (from file dataset with add-one prior applied): A 0.242 C 0.257 G 0.254 T 0.248 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAAAATGG MEME-1 width = 8 sites = 51 llr = 451 E-value = 2.9e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAAATGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 19aa92:1 pos.-specific C 7::::::: probability G 21::1:a8 matrix T :::::8:: bits 2.0 ** * 1.8 ** * 1.6 **** * 1.4 **** * Relative 1.2 **** ** Entropy 1.0 ******* (12.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAAATGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAATGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9985236-9985356 41 1.41e-05 GGATGCTGCT CAAAATGG CTCCCACTCA chr2L:1967473-1967593 34 1.41e-05 AGCCGAGCTG CAAAATGG GCGACGTCTA chr2L:5652-5772 39 1.41e-05 ttttgcaacc caaaatgg cggcgtacga chrX:19546805-19546925 109 1.41e-05 AAGAGGCCAG CAAAATGG AGTT chr2R:12460149-12460269 89 1.41e-05 TGTCACCTCA CAAAATGG CGCTCAACGG chr2L:20175109-20175229 41 1.41e-05 ttacgcaacc caaaatgg cggcggacga chrX:7159370-7159490 71 1.41e-05 AATCCCCTAA CAAAATGG TAGTCATCTG chr3L:12328852-12328972 7 1.41e-05 GTGCGG CAAAATGG ACGCCGGGGA chr3R:23207394-23207514 25 1.41e-05 ACATGGCACA CAAAATGG TGGCCAGCGA chr2L:6701-6821 85 1.41e-05 GTTGGCAATA CAAAATGG CGGCGGAATG chr3R:11306067-11306187 56 1.41e-05 ATCTCCACCC CAAAATGG GATGGGTTAT chr2R:16162095-16162215 40 1.41e-05 CAAATCGATT CAAAATGG TGGCACAAAT chr2R:15839074-15839194 30 1.41e-05 GACGCACTCA CAAAATGG CCGACGCGAA chrX:12615865-12615985 97 1.41e-05 TAACGGCAAA CAAAATGG CTAACGGGAC chr3R:16410833-16410953 78 1.41e-05 CGAACGATTC CAAAATGG TCGAAGGGTG chrX:4647461-4647581 74 1.41e-05 TTGTAGCTGA CAAAATGG CGGAGATTTT chrX:2681736-2681856 92 1.41e-05 GGCATACACA CAAAATGG GCGTACTCGT chr2L:12689420-12689540 4 1.41e-05 AGT CAAAATGG AAACCCAAAT chr2L:12569610-12569730 2 2.79e-05 A CAAAAAGG AAAGGCATGC chr2R:20933745-20933865 43 2.79e-05 CATGTCATGG CAAAAAGG GGGGCGCGGG chr3R:16396693-16396813 5 2.79e-05 ACGC CAAAAAGG AAAGGCGGCC chr2R:13536607-13536727 11 2.79e-05 GCGCAGTGTC CAAAAAGG GGGCGTGGCC chr3L:5343020-5343140 14 2.79e-05 AATTTGATAG CAAAAAGG AGCGGAAACG chrX:2546392-2546512 37 2.79e-05 TCAACACCAC CAAAAAGG CGGCTTCCCA chr3L:6934952-6935072 65 4.18e-05 GAAATGTCGG GAAAATGG GAAAAGTGGG chr3R:17599858-17599978 70 4.18e-05 TCCCGGCTCT GAAAATGG CGAATTAAAT chrX:4600209-4600329 77 4.18e-05 TCTCCATCCA GAAAATGG CCATTGAGGG chrX:17412883-17413003 5 4.18e-05 AGCT GAAAATGG GGGCTTTTCC chr4:999931-1000051 100 4.18e-05 ttgggagggt gaaaatgg atgactggaa chr2R:21525989-21526109 29 6.85e-05 CCATCCACCC AAAAATGG AGGCTGCCAA chr4:428372-428492 52 6.85e-05 AACTCTTCCG CAAAATGA GGGTGGATTT chr3R:4871773-4871893 10 6.85e-05 CGAAAGTAC AAAAATGG CCAAGAGCGA chr3L:1929099-1929219 94 6.85e-05 TGATTTGTCG AAAAATGG GGGAGCGAAA chrX:610168-610288 51 6.85e-05 ATCCCGCCCA CAAAATGA TTGAGCCAAC chrX:4618994-4619114 20 6.85e-05 ATCAGCCAAC CAAAATGA AAGGCCAAAC chr3R:32071815-32071935 41 6.85e-05 TTTTTAAAAC AAAAATGG CTTTTTAAAA chr3R:16678085-16678205 8 9.81e-05 TTGCCAG CGAAATGG CTAAATGGTT chr3R:13895766-13895886 61 9.81e-05 GGGACAAACA CAAAGTGG CGGCATTATT chr2L:368825-368945 37 9.81e-05 CAACTCTCTT CGAAATGG AGCTCTTCGA chrX:3809218-3809338 30 9.81e-05 ATTGGCTGGT CGAAATGG GGGCTGAAAC chr2L:9082890-9083010 88 9.81e-05 TGTTAAAATG CAAAGTGG TTCGGTAACA chrX:20559706-20559826 73 9.81e-05 CGGCGAGGCT CAAAGTGG GAAACAGTAG chr2L:19769831-19769951 3 1.12e-04 TC GAAAAAGG GGGCGTGCCT chr2R:20956205-20956325 86 1.26e-04 GCTCGTCGGA CAAAAGGG TGTCTTATGC chr3R:21563449-21563569 112 1.26e-04 TTACTCGAAA CAAAAGGG G chrX:4521016-4521136 3 1.52e-04 AG CAAAAAGA GGGTGGTTCC chr2L:8747625-8747745 4 1.52e-04 CGC AAAAAAGG ACACGCGGCT chr3R:8368708-8368828 84 1.66e-04 tttgTTATCG GAAAATGA AATGTCAGAG chr3R:30617586-30617706 38 1.66e-04 TCGTCAGGAG GAAAATGA TGGGGGAAGA chr4:978639-978759 26 1.78e-04 ACATACTAGA AAAAATGA GCCAATAAGA chr3R:22053882-22054002 63 1.92e-04 ACGACAAGAA CAAAATGC CGTCGGCTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAATGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9985236-9985356 1.4e-05 40_[+1]_72 chr2L:1967473-1967593 1.4e-05 33_[+1]_79 chr2L:5652-5772 1.4e-05 38_[+1]_74 chrX:19546805-19546925 1.4e-05 108_[+1]_4 chr2R:12460149-12460269 1.4e-05 88_[+1]_24 chr2L:20175109-20175229 1.4e-05 40_[+1]_72 chrX:7159370-7159490 1.4e-05 70_[+1]_42 chr3L:12328852-12328972 1.4e-05 6_[+1]_106 chr3R:23207394-23207514 1.4e-05 24_[+1]_88 chr2L:6701-6821 1.4e-05 84_[+1]_28 chr3R:11306067-11306187 1.4e-05 55_[+1]_57 chr2R:16162095-16162215 1.4e-05 39_[+1]_73 chr2R:15839074-15839194 1.4e-05 29_[+1]_83 chrX:12615865-12615985 1.4e-05 96_[+1]_16 chr3R:16410833-16410953 1.4e-05 77_[+1]_35 chrX:4647461-4647581 1.4e-05 73_[+1]_39 chrX:2681736-2681856 1.4e-05 91_[+1]_21 chr2L:12689420-12689540 1.4e-05 3_[+1]_109 chr2L:12569610-12569730 2.8e-05 1_[+1]_111 chr2R:20933745-20933865 2.8e-05 42_[+1]_70 chr3R:16396693-16396813 2.8e-05 4_[+1]_108 chr2R:13536607-13536727 2.8e-05 10_[+1]_102 chr3L:5343020-5343140 2.8e-05 13_[+1]_99 chrX:2546392-2546512 2.8e-05 36_[+1]_76 chr3L:6934952-6935072 4.2e-05 64_[+1]_48 chr3R:17599858-17599978 4.2e-05 69_[+1]_43 chrX:4600209-4600329 4.2e-05 76_[+1]_36 chrX:17412883-17413003 4.2e-05 4_[+1]_108 chr4:999931-1000051 4.2e-05 99_[+1]_13 chr2R:21525989-21526109 6.9e-05 28_[+1]_84 chr4:428372-428492 6.9e-05 51_[+1]_61 chr3R:4871773-4871893 6.9e-05 9_[+1]_103 chr3L:1929099-1929219 6.9e-05 93_[+1]_19 chrX:610168-610288 6.9e-05 50_[+1]_62 chrX:4618994-4619114 6.9e-05 19_[+1]_93 chr3R:32071815-32071935 6.9e-05 40_[+1]_72 chr3R:16678085-16678205 9.8e-05 7_[+1]_105 chr3R:13895766-13895886 9.8e-05 60_[+1]_52 chr2L:368825-368945 9.8e-05 36_[+1]_76 chrX:3809218-3809338 9.8e-05 29_[+1]_83 chr2L:9082890-9083010 9.8e-05 87_[+1]_25 chrX:20559706-20559826 9.8e-05 72_[+1]_40 chr2L:19769831-19769951 0.00011 2_[+1]_110 chr2R:20956205-20956325 0.00013 85_[+1]_27 chr3R:21563449-21563569 0.00013 111_[+1]_1 chrX:4521016-4521136 0.00015 2_[+1]_110 chr2L:8747625-8747745 0.00015 3_[+1]_109 chr3R:8368708-8368828 0.00017 83_[+1]_29 chr3R:30617586-30617706 0.00017 37_[+1]_75 chr4:978639-978759 0.00018 25_[+1]_87 chr3R:22053882-22054002 0.00019 62_[+1]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAATGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAAATGG width=8 seqs=51 chr2R:9985236-9985356 ( 41) CAAAATGG 1 chr2L:1967473-1967593 ( 34) CAAAATGG 1 chr2L:5652-5772 ( 39) CAAAATGG 1 chrX:19546805-19546925 ( 109) CAAAATGG 1 chr2R:12460149-12460269 ( 89) CAAAATGG 1 chr2L:20175109-20175229 ( 41) CAAAATGG 1 chrX:7159370-7159490 ( 71) CAAAATGG 1 chr3L:12328852-12328972 ( 7) CAAAATGG 1 chr3R:23207394-23207514 ( 25) CAAAATGG 1 chr2L:6701-6821 ( 85) CAAAATGG 1 chr3R:11306067-11306187 ( 56) CAAAATGG 1 chr2R:16162095-16162215 ( 40) CAAAATGG 1 chr2R:15839074-15839194 ( 30) CAAAATGG 1 chrX:12615865-12615985 ( 97) CAAAATGG 1 chr3R:16410833-16410953 ( 78) CAAAATGG 1 chrX:4647461-4647581 ( 74) CAAAATGG 1 chrX:2681736-2681856 ( 92) CAAAATGG 1 chr2L:12689420-12689540 ( 4) CAAAATGG 1 chr2L:12569610-12569730 ( 2) CAAAAAGG 1 chr2R:20933745-20933865 ( 43) CAAAAAGG 1 chr3R:16396693-16396813 ( 5) CAAAAAGG 1 chr2R:13536607-13536727 ( 11) CAAAAAGG 1 chr3L:5343020-5343140 ( 14) CAAAAAGG 1 chrX:2546392-2546512 ( 37) CAAAAAGG 1 chr3L:6934952-6935072 ( 65) GAAAATGG 1 chr3R:17599858-17599978 ( 70) GAAAATGG 1 chrX:4600209-4600329 ( 77) GAAAATGG 1 chrX:17412883-17413003 ( 5) GAAAATGG 1 chr4:999931-1000051 ( 100) GAAAATGG 1 chr2R:21525989-21526109 ( 29) AAAAATGG 1 chr4:428372-428492 ( 52) CAAAATGA 1 chr3R:4871773-4871893 ( 10) AAAAATGG 1 chr3L:1929099-1929219 ( 94) AAAAATGG 1 chrX:610168-610288 ( 51) CAAAATGA 1 chrX:4618994-4619114 ( 20) CAAAATGA 1 chr3R:32071815-32071935 ( 41) AAAAATGG 1 chr3R:16678085-16678205 ( 8) CGAAATGG 1 chr3R:13895766-13895886 ( 61) CAAAGTGG 1 chr2L:368825-368945 ( 37) CGAAATGG 1 chrX:3809218-3809338 ( 30) CGAAATGG 1 chr2L:9082890-9083010 ( 88) CAAAGTGG 1 chrX:20559706-20559826 ( 73) CAAAGTGG 1 chr2L:19769831-19769951 ( 3) GAAAAAGG 1 chr2R:20956205-20956325 ( 86) CAAAAGGG 1 chr3R:21563449-21563569 ( 112) CAAAAGGG 1 chrX:4521016-4521136 ( 3) CAAAAAGA 1 chr2L:8747625-8747745 ( 4) AAAAAAGG 1 chr3R:8368708-8368828 ( 84) GAAAATGA 1 chr3R:30617586-30617706 ( 38) GAAAATGA 1 chr4:978639-978759 ( 26) AAAAATGA 1 chr3R:22053882-22054002 ( 63) CAAAATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAATGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2612 E= 2.9e-020 -104 150 -69 -1232 196 -1232 -211 -1232 205 -1232 -1232 -1232 205 -1232 -1232 -1232 196 -1232 -211 -1232 -45 -1232 -269 166 -1232 -1232 198 -1232 -82 -371 173 -1232 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAATGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 2.9e-020 0.117647 0.725490 0.156863 0.000000 0.941176 0.000000 0.058824 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.941176 0.000000 0.058824 0.000000 0.176471 0.000000 0.039216 0.784314 0.000000 0.000000 1.000000 0.000000 0.137255 0.019608 0.843137 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAATGG MEME-1 regular expression -------------------------------------------------------------------------------- CAAAATGG -------------------------------------------------------------------------------- Time 7.37 secs. ******************************************************************************** ******************************************************************************** MOTIF KGRTTGGT MEME-2 width = 8 sites = 70 llr = 534 E-value = 5.4e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGRTTGGT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::7::::: pos.-specific C 21:::::2 probability G 3932:aa1 matrix T 5::8a::6 bits 2.0 *** 1.8 *** 1.6 *** 1.4 * *** Relative 1.2 * **** Entropy 1.0 ****** (11.0 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGATTGGT consensus G GG C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGRTTGGT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12460149-12460269 10 1.50e-05 CTGGCCCTG TGATTGGT GCGGATATTT chr3L:17503777-17503897 75 1.50e-05 CGAATCCATC TGATTGGT CAGCGAATTG chr3R:7136022-7136142 43 1.50e-05 CCGAGCTCTG TGATTGGT GGAAGCTTGG chr2R:8289100-8289220 35 1.50e-05 CGAAATTTTG TGATTGGT CGcgacgccg chr3R:8368708-8368828 56 1.50e-05 ATGCGCATTt tgattggt tggttggttg chrX:7568488-7568608 113 1.50e-05 GCGCGTCTTT TGATTGGT chr2L:319904-320024 39 1.50e-05 CGGTTAGATT TGATTGGT CGAGTGCATG chr3R:22053882-22054002 106 1.50e-05 GCCACTAACC TGATTGGT TGAGTAC chr2R:16162095-16162215 88 1.50e-05 CGCTCTCTGC TGATTGGT GTGTGAAAAT chr4:1097802-1097922 7 1.50e-05 GTGCTG TGATTGGT GCCGTTGCGC chr3L:8646957-8647077 18 1.50e-05 TGGTTGATCC TGATTGGT GGAACACATA chrX:15379187-15379307 27 1.50e-05 GCGTGCCCTT TGATTGGT TGCCCGATGG chr4:423462-423582 58 1.50e-05 CAGCGCTATT TGATTGGT CGGCAGAGTT chr2R:23626388-23626508 82 4.61e-05 GGCCGTCGAA TGGTTGGT ATCAAGGGGC chr2R:25109775-25109895 70 4.61e-05 TCGAGTTCCC TGGTTGGT TGACCAACTT chr3L:4843584-4843704 54 4.61e-05 ACCTTGCCCC TGGTTGGT CCTTCCATCC chr2R:12249596-12249716 9 4.61e-05 CAGTGTGT TGGTTGGT GGAAATGCTT chr3R:16410833-16410953 107 4.61e-05 CAATGAAGGG TGGTTGGT TGCCCT chr3R:13923766-13923886 55 6.17e-05 GCAGCCATCT TGATTGGC AATGTTATAA chr3L:5343020-5343140 73 6.17e-05 TGGCCAAAGC TGATTGGC AAATCGACTA chr3L:21818854-21818974 11 6.17e-05 ACATAACTCT TGATTGGC TGTGAAACTC chr3R:16632837-16632957 59 6.17e-05 CTTGGCATTT TGATTGGC TCGGCACGCA chr3R:20055945-20056065 28 9.26e-05 CTGGCGACTC CGATTGGT CCTAGTAAAT chr3R:16427673-16427793 6 9.26e-05 CTCTA CGATTGGT CTTCTCTTTT chr2R:10239193-10239313 7 9.26e-05 GCAATC CGATTGGT CAGTGGATTT chr2L:368825-368945 52 9.26e-05 TGGAGCTCTT CGATTGGT TGACTTCGTC chr2R:23094380-23094500 63 9.26e-05 CGGCGATCTG CGATTGGT TGCTGCTCCT chrX:17339820-17339940 47 1.09e-04 GGGCTGTTTT GGGTTGGT TGTCATCGGT chr3R:21551688-21551808 95 1.09e-04 TTTTGTTTCG GGGTTGGT TGCTCGGCCT chr3R:19639322-19639442 11 1.09e-04 TGGATTCGAT GGGTTGGT CCTGTTCCCA chr4:999931-1000051 87 1.24e-04 gccaattggc tgattggg agggtgaaaa chr3L:21610689-21610809 90 1.40e-04 CAAGGACCTC GGATTGGC TATGCGGCGA chr3R:23296336-23296456 6 1.40e-04 AAGTG GGATTGGC TGCCGCCTCT chrX:3809218-3809338 18 1.40e-04 TTTCCGTTCC GGATTGGC TGGTCGAAAT chr4:996100-996220 44 1.40e-04 TTTCAAAATC GGATTGGC TAAAATATTT chr2L:6701-6821 44 1.87e-04 TCACGCGAGA GGAGTGGT CTAAATTTTA chr3R:16396693-16396813 43 1.87e-04 GAAGGGAAGA GGAGTGGT GGTGGGCGAA chr3R:17666630-17666750 29 1.87e-04 cttttcttgc tggttggc tcctgttttg chr2L:13717263-13717383 64 1.87e-04 TCGGACGACT TCATTGGT GGAAAAGCCA chr3L:18860574-18860694 22 1.87e-04 GCCAGGACTC TCATTGGT CGCCATCGAA chrX:19535549-19535669 11 1.87e-04 CGGTTTCGTT TGGTTGGC TGGcagtacc chr4:87418-87538 81 1.87e-04 ATAAACTCTC TCATTGGT CCTCTCATGG chr2L:18794123-18794243 1 2.20e-04 . TGGGTGGT TGGGGGTTAG chr2L:8881219-8881339 77 2.20e-04 CAGCCGCAGT CGGTTGGT CTAACCCAAC chr2L:547315-547435 27 2.20e-04 TGCGCCGCAG TGGGTGGT CCTGCGCATC chr3L:12310592-12310712 62 2.20e-04 gggtggtgag tgggtggt gggttgatgt chr2R:20933745-20933865 81 2.20e-04 CTGTGGGTGT TGGGTGGT GGTTCAGCAT chr3R:16010067-16010187 44 2.35e-04 CGGCTGGCAG GGATTGGG CAACCAGCCA chr2L:8853185-8853305 85 2.35e-04 ATGGGGTTGC GGATTGGG GATGGAGAGC chr3L:22132833-22132953 25 2.84e-04 AGAAACCTTC CGATTGGC GCGCTCACTC chrX:4521016-4521136 74 3.32e-04 CCCAATGGGT GGGTTGGC CATAACGGAA chr3R:11337204-11337324 37 3.32e-04 TGTTGCTGCG GCATTGGT GGCCACATTG chr3R:21077699-21077819 67 3.32e-04 ACAACAATTG CGAGTGGT ACAAGTGTAT chr3R:30030239-30030359 102 3.32e-04 CCCGACTGCT GCATTGGT CGATAACGTC chr3R:18368730-18368850 30 3.64e-04 gggtgtgcgg ggggtggT AATGCTGGAA chrX:2440326-2440446 53 3.64e-04 TCATCTTCTT GGGGTGGt ccatcctcct chr3R:17599858-17599978 1 3.64e-04 . TCGTTGGT TGGATGGGCG chr3L:12447202-12447322 92 3.96e-04 ATCCATGGGG TGAGTGGG TGCCGCCAAG chr3R:21387723-21387843 32 3.96e-04 CCTTTCGGAC TGAGTGGG CAGCCATGTT chr2R:15671636-15671756 98 3.96e-04 TCTCTGTGTG TGAGTGGG ATCTGTTATC chr2R:8029501-8029621 1 4.44e-04 . GGGTTGGG GAGGGAAAGA chr4:412060-412180 107 4.44e-04 GCGTGGCTTG GGGTTGGG ACGAGA chrX:2655172-2655292 15 4.44e-04 GTTGCCACCA GGGTTGGG CATTCACTAA chr3R:32072089-32072209 13 4.44e-04 tgaagagagg ggagtggc ctatatattg chr2L:3299774-3299894 4 5.09e-04 CTA TCAGTGGT GCACTAGCGT chr3R:10364438-10364558 18 5.09e-04 CTATTGGCTA CCATTGGT GGCCGCTCCA chr2L:18783506-18783626 76 5.09e-04 TGTTTGTTTG CGGTTGGC CCAGACCAGA chr2R:14477685-14477805 38 5.09e-04 CGAGCGGCTC CCATTGGT TGAGTATTCT chr3R:18266810-18266930 93 5.09e-04 CTCTGATAGG TGGGTGGC TCGGGTGGCT chr2L:19606437-19606557 37 6.40e-04 CTCTTCGGGT CGAGTGGC GACTCACAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGRTTGGT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12460149-12460269 1.5e-05 9_[+2]_103 chr3L:17503777-17503897 1.5e-05 74_[+2]_38 chr3R:7136022-7136142 1.5e-05 42_[+2]_70 chr2R:8289100-8289220 1.5e-05 34_[+2]_78 chr3R:8368708-8368828 1.5e-05 55_[+2]_57 chrX:7568488-7568608 1.5e-05 112_[+2] chr2L:319904-320024 1.5e-05 38_[+2]_74 chr3R:22053882-22054002 1.5e-05 105_[+2]_7 chr2R:16162095-16162215 1.5e-05 87_[+2]_25 chr4:1097802-1097922 1.5e-05 6_[+2]_106 chr3L:8646957-8647077 1.5e-05 17_[+2]_95 chrX:15379187-15379307 1.5e-05 26_[+2]_86 chr4:423462-423582 1.5e-05 57_[+2]_55 chr2R:23626388-23626508 4.6e-05 81_[+2]_31 chr2R:25109775-25109895 4.6e-05 69_[+2]_43 chr3L:4843584-4843704 4.6e-05 53_[+2]_59 chr2R:12249596-12249716 4.6e-05 8_[+2]_104 chr3R:16410833-16410953 4.6e-05 106_[+2]_6 chr3R:13923766-13923886 6.2e-05 54_[+2]_58 chr3L:5343020-5343140 6.2e-05 72_[+2]_40 chr3L:21818854-21818974 6.2e-05 10_[+2]_102 chr3R:16632837-16632957 6.2e-05 58_[+2]_54 chr3R:20055945-20056065 9.3e-05 27_[+2]_85 chr3R:16427673-16427793 9.3e-05 5_[+2]_107 chr2R:10239193-10239313 9.3e-05 6_[+2]_106 chr2L:368825-368945 9.3e-05 51_[+2]_61 chr2R:23094380-23094500 9.3e-05 62_[+2]_50 chrX:17339820-17339940 0.00011 46_[+2]_66 chr3R:21551688-21551808 0.00011 94_[+2]_18 chr3R:19639322-19639442 0.00011 10_[+2]_102 chr4:999931-1000051 0.00012 86_[+2]_26 chr3L:21610689-21610809 0.00014 89_[+2]_23 chr3R:23296336-23296456 0.00014 5_[+2]_107 chrX:3809218-3809338 0.00014 17_[+2]_95 chr4:996100-996220 0.00014 43_[+2]_69 chr2L:6701-6821 0.00019 43_[+2]_69 chr3R:16396693-16396813 0.00019 42_[+2]_70 chr3R:17666630-17666750 0.00019 28_[+2]_84 chr2L:13717263-13717383 0.00019 63_[+2]_49 chr3L:18860574-18860694 0.00019 21_[+2]_91 chrX:19535549-19535669 0.00019 10_[+2]_102 chr4:87418-87538 0.00019 80_[+2]_32 chr2L:18794123-18794243 0.00022 [+2]_112 chr2L:8881219-8881339 0.00022 76_[+2]_36 chr2L:547315-547435 0.00022 26_[+2]_86 chr3L:12310592-12310712 0.00022 61_[+2]_51 chr2R:20933745-20933865 0.00022 80_[+2]_32 chr3R:16010067-16010187 0.00024 43_[+2]_69 chr2L:8853185-8853305 0.00024 84_[+2]_28 chr3L:22132833-22132953 0.00028 24_[+2]_88 chrX:4521016-4521136 0.00033 73_[+2]_39 chr3R:11337204-11337324 0.00033 36_[+2]_76 chr3R:21077699-21077819 0.00033 66_[+2]_46 chr3R:30030239-30030359 0.00033 101_[+2]_11 chr3R:18368730-18368850 0.00036 29_[+2]_83 chrX:2440326-2440446 0.00036 52_[+2]_60 chr3R:17599858-17599978 0.00036 [+2]_112 chr3L:12447202-12447322 0.0004 91_[+2]_21 chr3R:21387723-21387843 0.0004 31_[+2]_81 chr2R:15671636-15671756 0.0004 97_[+2]_15 chr2R:8029501-8029621 0.00044 [+2]_112 chr4:412060-412180 0.00044 106_[+2]_6 chrX:2655172-2655292 0.00044 14_[+2]_98 chr3R:32072089-32072209 0.00044 12_[+2]_100 chr2L:3299774-3299894 0.00051 3_[+2]_109 chr3R:10364438-10364558 0.00051 17_[+2]_95 chr2L:18783506-18783626 0.00051 75_[+2]_37 chr2R:14477685-14477805 0.00051 37_[+2]_75 chr3R:18266810-18266930 0.00051 92_[+2]_20 chr2L:19606437-19606557 0.00064 36_[+2]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGRTTGGT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGRTTGGT width=8 seqs=70 chr2R:12460149-12460269 ( 10) TGATTGGT 1 chr3L:17503777-17503897 ( 75) TGATTGGT 1 chr3R:7136022-7136142 ( 43) TGATTGGT 1 chr2R:8289100-8289220 ( 35) TGATTGGT 1 chr3R:8368708-8368828 ( 56) TGATTGGT 1 chrX:7568488-7568608 ( 113) TGATTGGT 1 chr2L:319904-320024 ( 39) TGATTGGT 1 chr3R:22053882-22054002 ( 106) TGATTGGT 1 chr2R:16162095-16162215 ( 88) TGATTGGT 1 chr4:1097802-1097922 ( 7) TGATTGGT 1 chr3L:8646957-8647077 ( 18) TGATTGGT 1 chrX:15379187-15379307 ( 27) TGATTGGT 1 chr4:423462-423582 ( 58) TGATTGGT 1 chr2R:23626388-23626508 ( 82) TGGTTGGT 1 chr2R:25109775-25109895 ( 70) TGGTTGGT 1 chr3L:4843584-4843704 ( 54) TGGTTGGT 1 chr2R:12249596-12249716 ( 9) TGGTTGGT 1 chr3R:16410833-16410953 ( 107) TGGTTGGT 1 chr3R:13923766-13923886 ( 55) TGATTGGC 1 chr3L:5343020-5343140 ( 73) TGATTGGC 1 chr3L:21818854-21818974 ( 11) TGATTGGC 1 chr3R:16632837-16632957 ( 59) TGATTGGC 1 chr3R:20055945-20056065 ( 28) CGATTGGT 1 chr3R:16427673-16427793 ( 6) CGATTGGT 1 chr2R:10239193-10239313 ( 7) CGATTGGT 1 chr2L:368825-368945 ( 52) CGATTGGT 1 chr2R:23094380-23094500 ( 63) CGATTGGT 1 chrX:17339820-17339940 ( 47) GGGTTGGT 1 chr3R:21551688-21551808 ( 95) GGGTTGGT 1 chr3R:19639322-19639442 ( 11) GGGTTGGT 1 chr4:999931-1000051 ( 87) TGATTGGG 1 chr3L:21610689-21610809 ( 90) GGATTGGC 1 chr3R:23296336-23296456 ( 6) GGATTGGC 1 chrX:3809218-3809338 ( 18) GGATTGGC 1 chr4:996100-996220 ( 44) GGATTGGC 1 chr2L:6701-6821 ( 44) GGAGTGGT 1 chr3R:16396693-16396813 ( 43) GGAGTGGT 1 chr3R:17666630-17666750 ( 29) TGGTTGGC 1 chr2L:13717263-13717383 ( 64) TCATTGGT 1 chr3L:18860574-18860694 ( 22) TCATTGGT 1 chrX:19535549-19535669 ( 11) TGGTTGGC 1 chr4:87418-87538 ( 81) TCATTGGT 1 chr2L:18794123-18794243 ( 1) TGGGTGGT 1 chr2L:8881219-8881339 ( 77) CGGTTGGT 1 chr2L:547315-547435 ( 27) TGGGTGGT 1 chr3L:12310592-12310712 ( 62) TGGGTGGT 1 chr2R:20933745-20933865 ( 81) TGGGTGGT 1 chr3R:16010067-16010187 ( 44) GGATTGGG 1 chr2L:8853185-8853305 ( 85) GGATTGGG 1 chr3L:22132833-22132953 ( 25) CGATTGGC 1 chrX:4521016-4521136 ( 74) GGGTTGGC 1 chr3R:11337204-11337324 ( 37) GCATTGGT 1 chr3R:21077699-21077819 ( 67) CGAGTGGT 1 chr3R:30030239-30030359 ( 102) GCATTGGT 1 chr3R:18368730-18368850 ( 30) GGGGTGGT 1 chrX:2440326-2440446 ( 53) GGGGTGGT 1 chr3R:17599858-17599978 ( 1) TCGTTGGT 1 chr3L:12447202-12447322 ( 92) TGAGTGGG 1 chr3R:21387723-21387843 ( 32) TGAGTGGG 1 chr2R:15671636-15671756 ( 98) TGAGTGGG 1 chr2R:8029501-8029621 ( 1) GGGTTGGG 1 chr4:412060-412180 ( 107) GGGTTGGG 1 chrX:2655172-2655292 ( 15) GGGTTGGG 1 chr3R:32072089-32072209 ( 13) GGAGTGGC 1 chr2L:3299774-3299894 ( 4) TCAGTGGT 1 chr3R:10364438-10364558 ( 18) CCATTGGT 1 chr2L:18783506-18783626 ( 76) CGGTTGGC 1 chr2R:14477685-14477805 ( 38) CCATTGGT 1 chr3R:18266810-18266930 ( 93) TGGGTGGC 1 chr2L:19606437-19606557 ( 37) CGAGTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGRTTGGT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.47651 E= 5.4e-006 -1277 -58 17 113 -1277 -100 178 -1277 144 -1277 43 -1277 -1277 -1277 -15 164 -1277 -1277 -1277 201 -1277 -1277 198 -1277 -1277 -1277 198 -1277 -1277 -17 -98 138 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGRTTGGT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 5.4e-006 0.000000 0.171429 0.285714 0.542857 0.000000 0.128571 0.871429 0.000000 0.657143 0.000000 0.342857 0.000000 0.000000 0.000000 0.228571 0.771429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.228571 0.128571 0.642857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGRTTGGT MEME-2 regular expression -------------------------------------------------------------------------------- [TG]G[AG][TG]TGG[TC] -------------------------------------------------------------------------------- Time 13.56 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCKYTY MEME-3 width = 8 sites = 50 llr = 407 E-value = 2.1e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCKYTY MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :81a:6:6 probability G ::::4::: matrix T a29:64a4 bits 2.0 * * * 1.8 * * * 1.6 * * * 1.4 * ** * Relative 1.2 **** * Entropy 1.0 ******** (11.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCTC consensus T GT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKYTY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17820917-17821037 47 1.65e-05 tccctctctc tctctctc tctctGCATT chr3R:29520387-29520507 81 1.65e-05 Gctgtctctc tctctctc gctctGCGCA chrX:17812367-17812487 82 1.65e-05 gctcgctctc tctctctc tctctctctc chr2R:10239193-10239313 72 1.65e-05 TGCTTCCCCC TCTCTCTC TCCCACTCTC chrX:7368526-7368646 61 1.65e-05 CCATTTGCCA TCTCTCTC ACAATTCCCA chr3R:21558034-21558154 55 1.65e-05 gctcgcactc tctctctc tctctttcgt chr2R:12249596-12249716 75 1.65e-05 tctctcctcc tctctctc tctcGCTTAC chrX:2037750-2037870 56 1.65e-05 CACACTGCCG TCTCTCTC TAACATTCTA chr2L:10354001-10354121 19 1.65e-05 AATCGCTCTC TCTCTCTC GCGTGAGTCC chr3L:14122166-14122286 57 4.84e-05 GCACGCACCG TCTCTTTC TGTCGCACTC chr2L:585405-585525 84 4.84e-05 GGAGTCTTTC TCTCTTTC TCTGCGTTCT chr3R:4901352-4901472 75 4.84e-05 GTTGTCTCCC TCTCTTTC TCATTGgact chr3L:21458871-21458991 99 4.84e-05 ACATCGCCCG TCTCTCTT GCCTCGCATA chr2R:14814347-14814467 76 4.84e-05 GCAGTTCAGT TCTCTTTC AATTCAGTCT chr2R:20853756-20853876 109 4.84e-05 GCTATTCCCC TCTCTTTC GCCC chr3L:1929099-1929219 26 4.84e-05 CCTGCTGCCC TCTCTTTC GCACAGAGCA chr3R:13923766-13923886 9 4.84e-05 GCTAACCG TCTCTTTC GGTGTCGCCC chr3L:371367-371487 50 4.84e-05 CCTACTGCCG TCTCTTTC GCTACCATAT chrX:610168-610288 81 4.84e-05 ACAAACGCCA TCTCTTTC CTGCTCCAAG chr3R:32072089-32072209 100 4.84e-05 aatcttaata tctctctt gctctctttg chrX:8696334-8696454 53 6.53e-05 TTGTTTTGCC TCTCGCTC TCGCCTTTTG chr2R:20956205-20956325 72 6.53e-05 TCGCTACCCG TCTCGCTC GTCGGACAAA chr2L:6547016-6547136 83 6.53e-05 AGCGCTGCGC TCTCGCTC GCACGCTTGG chrX:19546805-19546925 52 6.53e-05 GCACTAGCTG TCTCGCTC CAACGCAGGC chr3R:4871773-4871893 104 6.53e-05 TCATCTAGTC TCTCGCTC TCGCTCGCA chr3R:21456892-21457012 62 6.53e-05 GGCCAAGAGC TCTCGCTC GCACGGTATC chr2L:18783506-18783626 14 8.06e-05 ATGGTGTTGC TCTCTTTT TCTGGCTGCC chr3R:16427673-16427793 16 8.06e-05 CGATTGGTCT TCTCTTTT GGAAACTCAA chr3R:6853115-6853235 89 1.13e-04 TGTATATTGC TCTCGCTT TGGCCGCAGC chr2R:23636597-23636717 75 1.13e-04 AACCCTGCCC TCTCGCTT GCACCGCACA chr4:996100-996220 28 1.13e-04 TATATATCTT TCTCGCTT TCAAAATCGG chrX:7159370-7159490 9 1.29e-04 TGTGGTCA TCTCGTTT TCGGGGTGGA chr2L:3685616-3685736 88 1.29e-04 TGTCGCAATT TCTCGTTT TGCCGGATTT chr2R:11703115-11703235 13 1.45e-04 GCATCGCCAT TTTCTCTC TATCTAAATA chr2R:15671636-15671756 84 1.45e-04 GCAGCGCGTA TTTCTCTC TGTGTGTGAG chr3L:10409640-10409760 24 1.76e-04 CCTCTGCTGA TTTCTTTC ACTTTTCGGG chrX:7230762-7230882 87 2.07e-04 CTGTTCCGCG tttctttt ttttcttttt chrX:5602441-5602561 49 2.07e-04 CCTTGCCATT TTTCTTTT ACCACTTTGC chrX:7161908-7162028 73 2.38e-04 CTTTTGGTCC TTTCGCTT Atgtctgtgt chr3R:23207394-23207514 52 2.38e-04 ATATGCGACT TTTCGTTC TCGAGGGGAA chrX:1735330-1735450 67 2.38e-04 CGACGGAGAC TTTCGCTT AGACGCACCC chr3R:29767863-29767983 54 2.38e-04 TCCGTTGGAT TTTCGCTT GTTTTTTTAA chr2R:8381444-8381564 62 2.71e-04 AATGTTACTT TTTCGTTT TCTTGATGGA chr3R:22053882-22054002 15 2.71e-04 AATATATGCT TTTCGTTT ACTTGCAGGT chrX:7568488-7568608 32 3.04e-04 ATTGTTTTTG TCCCTCTT GCTGCTGTGT chr2R:8270800-8270920 44 3.04e-04 CCAATCGCAT TCCCTCTT TCACATCGCC chr2R:23626388-23626508 33 3.21e-04 CGTCTCGCCA TCCCGCTC TGGCAGAGTA chr3L:5891263-5891383 7 3.21e-04 TTCTTG TCCCGCTC CAACAACGCT chrX:20536510-20536630 66 3.37e-04 CACACTTAAC TCCCTTTT TCGAAGAAAC chr2R:12460149-12460269 46 3.37e-04 CCACTCAATT TCCCTTTT TCCAGCCCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKYTY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17820917-17821037 1.7e-05 46_[+3]_66 chr3R:29520387-29520507 1.7e-05 80_[+3]_32 chrX:17812367-17812487 1.7e-05 81_[+3]_31 chr2R:10239193-10239313 1.7e-05 71_[+3]_41 chrX:7368526-7368646 1.7e-05 60_[+3]_52 chr3R:21558034-21558154 1.7e-05 54_[+3]_58 chr2R:12249596-12249716 1.7e-05 74_[+3]_38 chrX:2037750-2037870 1.7e-05 55_[+3]_57 chr2L:10354001-10354121 1.7e-05 18_[+3]_94 chr3L:14122166-14122286 4.8e-05 56_[+3]_56 chr2L:585405-585525 4.8e-05 83_[+3]_29 chr3R:4901352-4901472 4.8e-05 74_[+3]_38 chr3L:21458871-21458991 4.8e-05 98_[+3]_14 chr2R:14814347-14814467 4.8e-05 75_[+3]_37 chr2R:20853756-20853876 4.8e-05 108_[+3]_4 chr3L:1929099-1929219 4.8e-05 25_[+3]_87 chr3R:13923766-13923886 4.8e-05 8_[+3]_104 chr3L:371367-371487 4.8e-05 49_[+3]_63 chrX:610168-610288 4.8e-05 80_[+3]_32 chr3R:32072089-32072209 4.8e-05 99_[+3]_13 chrX:8696334-8696454 6.5e-05 52_[+3]_60 chr2R:20956205-20956325 6.5e-05 71_[+3]_41 chr2L:6547016-6547136 6.5e-05 82_[+3]_30 chrX:19546805-19546925 6.5e-05 51_[+3]_61 chr3R:4871773-4871893 6.5e-05 103_[+3]_9 chr3R:21456892-21457012 6.5e-05 61_[+3]_51 chr2L:18783506-18783626 8.1e-05 13_[+3]_99 chr3R:16427673-16427793 8.1e-05 15_[+3]_97 chr3R:6853115-6853235 0.00011 88_[+3]_24 chr2R:23636597-23636717 0.00011 74_[+3]_38 chr4:996100-996220 0.00011 27_[+3]_85 chrX:7159370-7159490 0.00013 8_[+3]_104 chr2L:3685616-3685736 0.00013 87_[+3]_25 chr2R:11703115-11703235 0.00014 12_[+3]_100 chr2R:15671636-15671756 0.00014 83_[+3]_29 chr3L:10409640-10409760 0.00018 23_[+3]_89 chrX:7230762-7230882 0.00021 86_[+3]_26 chrX:5602441-5602561 0.00021 48_[+3]_64 chrX:7161908-7162028 0.00024 72_[+3]_40 chr3R:23207394-23207514 0.00024 51_[+3]_61 chrX:1735330-1735450 0.00024 66_[+3]_46 chr3R:29767863-29767983 0.00024 53_[+3]_59 chr2R:8381444-8381564 0.00027 61_[+3]_51 chr3R:22053882-22054002 0.00027 14_[+3]_98 chrX:7568488-7568608 0.0003 31_[+3]_81 chr2R:8270800-8270920 0.0003 43_[+3]_69 chr2R:23626388-23626508 0.00032 32_[+3]_80 chr3L:5891263-5891383 0.00032 6_[+3]_106 chrX:20536510-20536630 0.00034 65_[+3]_47 chr2R:12460149-12460269 0.00034 45_[+3]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKYTY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCKYTY width=8 seqs=50 chr2R:17820917-17821037 ( 47) TCTCTCTC 1 chr3R:29520387-29520507 ( 81) TCTCTCTC 1 chrX:17812367-17812487 ( 82) TCTCTCTC 1 chr2R:10239193-10239313 ( 72) TCTCTCTC 1 chrX:7368526-7368646 ( 61) TCTCTCTC 1 chr3R:21558034-21558154 ( 55) TCTCTCTC 1 chr2R:12249596-12249716 ( 75) TCTCTCTC 1 chrX:2037750-2037870 ( 56) TCTCTCTC 1 chr2L:10354001-10354121 ( 19) TCTCTCTC 1 chr3L:14122166-14122286 ( 57) TCTCTTTC 1 chr2L:585405-585525 ( 84) TCTCTTTC 1 chr3R:4901352-4901472 ( 75) TCTCTTTC 1 chr3L:21458871-21458991 ( 99) TCTCTCTT 1 chr2R:14814347-14814467 ( 76) TCTCTTTC 1 chr2R:20853756-20853876 ( 109) TCTCTTTC 1 chr3L:1929099-1929219 ( 26) TCTCTTTC 1 chr3R:13923766-13923886 ( 9) TCTCTTTC 1 chr3L:371367-371487 ( 50) TCTCTTTC 1 chrX:610168-610288 ( 81) TCTCTTTC 1 chr3R:32072089-32072209 ( 100) TCTCTCTT 1 chrX:8696334-8696454 ( 53) TCTCGCTC 1 chr2R:20956205-20956325 ( 72) TCTCGCTC 1 chr2L:6547016-6547136 ( 83) TCTCGCTC 1 chrX:19546805-19546925 ( 52) TCTCGCTC 1 chr3R:4871773-4871893 ( 104) TCTCGCTC 1 chr3R:21456892-21457012 ( 62) TCTCGCTC 1 chr2L:18783506-18783626 ( 14) TCTCTTTT 1 chr3R:16427673-16427793 ( 16) TCTCTTTT 1 chr3R:6853115-6853235 ( 89) TCTCGCTT 1 chr2R:23636597-23636717 ( 75) TCTCGCTT 1 chr4:996100-996220 ( 28) TCTCGCTT 1 chrX:7159370-7159490 ( 9) TCTCGTTT 1 chr2L:3685616-3685736 ( 88) TCTCGTTT 1 chr2R:11703115-11703235 ( 13) TTTCTCTC 1 chr2R:15671636-15671756 ( 84) TTTCTCTC 1 chr3L:10409640-10409760 ( 24) TTTCTTTC 1 chrX:7230762-7230882 ( 87) TTTCTTTT 1 chrX:5602441-5602561 ( 49) TTTCTTTT 1 chrX:7161908-7162028 ( 73) TTTCGCTT 1 chr3R:23207394-23207514 ( 52) TTTCGTTC 1 chrX:1735330-1735450 ( 67) TTTCGCTT 1 chr3R:29767863-29767983 ( 54) TTTCGCTT 1 chr2R:8381444-8381564 ( 62) TTTCGTTT 1 chr3R:22053882-22054002 ( 15) TTTCGTTT 1 chrX:7568488-7568608 ( 32) TCCCTCTT 1 chr2R:8270800-8270920 ( 44) TCCCTCTT 1 chr2R:23626388-23626508 ( 33) TCCCGCTC 1 chr3L:5891263-5891383 ( 7) TCCCGCTC 1 chrX:20536510-20536630 ( 66) TCCCTTTT 1 chr2R:12460149-12460269 ( 46) TCCCTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKYTY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2738 E= 2.1e-002 -1229 -1229 -1229 201 -1229 160 -1229 -17 -1229 -110 -1229 183 -1229 196 -1229 -1229 -1229 -1229 58 132 -1229 118 -1229 76 -1229 -1229 -1229 201 -1229 122 -1229 69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKYTY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 2.1e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.780000 0.000000 0.220000 0.000000 0.120000 0.000000 0.880000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.380000 0.620000 0.000000 0.580000 0.000000 0.420000 0.000000 0.000000 0.000000 1.000000 0.000000 0.600000 0.000000 0.400000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKYTY MEME-3 regular expression -------------------------------------------------------------------------------- T[CT]TC[TG][CT]T[CT] -------------------------------------------------------------------------------- Time 19.60 secs. ******************************************************************************** ******************************************************************************** MOTIF YARCCAAT MEME-4 width = 8 sites = 43 llr = 383 E-value = 1.9e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif YARCCAAT MEME-4 Description -------------------------------------------------------------------------------- Simplified A 175::aa: pos.-specific C 6::aa::: probability G :35::::: matrix T 3::::::a bits 2.0 ***** 1.8 ***** 1.6 ***** 1.4 ***** Relative 1.2 ***** Entropy 1.0 ******* (12.8 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAACCAAT consensus TGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARCCAAT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:18373038-18373158 85 1.44e-05 CGTTGTTGGC CAACCAAT GCGCTCCGTC chrX:19546805-19546925 91 1.44e-05 TGAAGGCTTT CAACCAAT AAGAGGCCAG chr2R:8381444-8381564 28 1.44e-05 GCGGTGGGTG CAACCAAT CAGCGAGGCC chr3R:21387723-21387843 95 1.44e-05 GGCTCCATGC CAACCAAT GAGAAGAACT chr2L:2400044-2400164 65 1.44e-05 CATTCGCCGT CAACCAAT GCCGAAGGAC chr2L:6547016-6547136 54 2.96e-05 CTGCCGGAAA CAGCCAAT CGCCGTCCAG chr3L:12328852-12328972 31 2.96e-05 GGGAAATGGC CAGCCAAT CGCAGCGAGG chr2R:20991796-20991916 71 2.96e-05 CGAATGCCGG CAGCCAAT GAGAGTCCTG chr3L:8538507-8538627 87 2.96e-05 CTTTTTATAA CAGCCAAT CGGCATGAGG chr3R:30617586-30617706 86 2.96e-05 TGATTTATGC CAGCCAAT GGTTGAGCTC chrX:12615865-12615985 12 2.96e-05 CCCAGAATGA CAGCCAAT GGCGCGGCGG chr4:999931-1000051 75 2.96e-05 AGGCGtgcct cagccaat tggctgattg chrX:4647461-4647581 23 2.96e-05 CGTTGAAAGC CAGCCAAT GCCAAGTTAT chr2L:9082890-9083010 51 2.96e-05 TAATGCGGCT CAGCCAAT GAGAGTCAAG chrX:17405013-17405133 64 2.96e-05 TTCGCTTAAG CAGCCAAT CAGGACAGCA chr2R:11703115-11703235 52 2.96e-05 TACTGGCGCC CAGCCAAT CAGAACGCTG chr2L:12689420-12689540 113 2.96e-05 AACTTTTCAG CAGCCAAT chr2L:3299774-3299894 58 4.35e-05 GTATGCACGA TAACCAAT GGTATTCCAG chr2L:11229070-11229190 88 4.35e-05 AGACACAAGT TAACCAAT GAAATAAACG chr3R:24787907-24788027 25 4.35e-05 TAAAGTGAAT TAACCAAT CGGCGGGCAG chrX:3808626-3808746 2 4.35e-05 T TAACCAAT GACATAGCCT chr2L:19606437-19606557 103 5.81e-05 CTAGCAGCCT TAGCCAAT CGTAAAAGTT chr2R:16162095-16162215 11 5.81e-05 ATATGCGAAT TAGCCAAT GATTATGCAT chr4:639057-639177 90 5.81e-05 AGCTCAAGTA TAGCCAAT GAAATTTTAT chr4:996100-996220 64 5.81e-05 AAATATTTGT TAGCCAAT CGAGAAGCAG chr2L:15109271-15109391 83 7.33e-05 ACCTGTTTCT CGACCAAT TAAATTCGAG chrX:5736444-5736564 54 7.33e-05 GCAGAAAGAA CGACCAAT AAAAAAAAGT chr2R:13536607-13536727 34 7.33e-05 TGGCCAAGGA CGACCAAT CGGATGGCTC chr2L:10295435-10295555 76 7.33e-05 CGTTTTGCGT CGACCAAT GGTGGGCACT chr3R:16013754-16013874 55 7.33e-05 AGTGTCCTTT CGACCAAT GGAAGAACAG chrX:2435044-2435164 64 8.92e-05 CTCGCAGGCT CGGCCAAT CAGAGGCAGA chr2L:5362467-5362587 32 8.92e-05 ATTTCCACGC CGGCCAAT ATATGCGTGC chr3L:5594984-5595104 86 8.92e-05 AGCTGGGTCG CGGCCAAT CGGATTCGTT chr2R:14207969-14208089 73 1.04e-04 TAGATGCTGT TGACCAAT AAGCATAAAC chr2R:13013006-13013126 47 1.04e-04 GTCGGAGTCA TGACCAAT TGGCGTGTTT chr3L:20563882-20564002 21 1.04e-04 CTCGGCGGAT TGACCAAT AAACTCGCAG chr3L:5343020-5343140 35 1.04e-04 GGAAACGAAC TGACCAAT TAAAAGTTGG chr2R:8000303-8000423 44 1.19e-04 TAATGTCTAA TGGCCAAT GCCAGTGGCA chr3L:5423708-5423828 15 1.19e-04 TACACATTCT TGGCCAAT GAGATTTATG chr3R:30909155-30909275 93 1.33e-04 CAAAAGAAAT AAACCAAT CGAAAGGGAG chr3L:18860574-18860694 4 1.33e-04 AAA AAACCAAT GCCAGGACTC chrX:2037750-2037870 13 1.33e-04 GCTATTAGCT AAACCAAT AAAAACCACC chr3R:10542113-10542233 43 1.33e-04 CGTTATATGA AAACCAAT CGCATCAAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARCCAAT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:18373038-18373158 1.4e-05 84_[+4]_28 chrX:19546805-19546925 1.4e-05 90_[+4]_22 chr2R:8381444-8381564 1.4e-05 27_[+4]_85 chr3R:21387723-21387843 1.4e-05 94_[+4]_18 chr2L:2400044-2400164 1.4e-05 64_[+4]_48 chr2L:6547016-6547136 3e-05 53_[+4]_59 chr3L:12328852-12328972 3e-05 30_[+4]_82 chr2R:20991796-20991916 3e-05 70_[+4]_42 chr3L:8538507-8538627 3e-05 86_[+4]_26 chr3R:30617586-30617706 3e-05 85_[+4]_27 chrX:12615865-12615985 3e-05 11_[+4]_101 chr4:999931-1000051 3e-05 74_[+4]_38 chrX:4647461-4647581 3e-05 22_[+4]_90 chr2L:9082890-9083010 3e-05 50_[+4]_62 chrX:17405013-17405133 3e-05 63_[+4]_49 chr2R:11703115-11703235 3e-05 51_[+4]_61 chr2L:12689420-12689540 3e-05 112_[+4] chr2L:3299774-3299894 4.4e-05 57_[+4]_55 chr2L:11229070-11229190 4.4e-05 87_[+4]_25 chr3R:24787907-24788027 4.4e-05 24_[+4]_88 chrX:3808626-3808746 4.4e-05 1_[+4]_111 chr2L:19606437-19606557 5.8e-05 102_[+4]_10 chr2R:16162095-16162215 5.8e-05 10_[+4]_102 chr4:639057-639177 5.8e-05 89_[+4]_23 chr4:996100-996220 5.8e-05 63_[+4]_49 chr2L:15109271-15109391 7.3e-05 82_[+4]_30 chrX:5736444-5736564 7.3e-05 53_[+4]_59 chr2R:13536607-13536727 7.3e-05 33_[+4]_79 chr2L:10295435-10295555 7.3e-05 75_[+4]_37 chr3R:16013754-16013874 7.3e-05 54_[+4]_58 chrX:2435044-2435164 8.9e-05 63_[+4]_49 chr2L:5362467-5362587 8.9e-05 31_[+4]_81 chr3L:5594984-5595104 8.9e-05 85_[+4]_27 chr2R:14207969-14208089 0.0001 72_[+4]_40 chr2R:13013006-13013126 0.0001 46_[+4]_66 chr3L:20563882-20564002 0.0001 20_[+4]_92 chr3L:5343020-5343140 0.0001 34_[+4]_78 chr2R:8000303-8000423 0.00012 43_[+4]_69 chr3L:5423708-5423828 0.00012 14_[+4]_98 chr3R:30909155-30909275 0.00013 92_[+4]_20 chr3L:18860574-18860694 0.00013 3_[+4]_109 chrX:2037750-2037870 0.00013 12_[+4]_100 chr3R:10542113-10542233 0.00013 42_[+4]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARCCAAT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YARCCAAT width=8 seqs=43 chr3R:18373038-18373158 ( 85) CAACCAAT 1 chrX:19546805-19546925 ( 91) CAACCAAT 1 chr2R:8381444-8381564 ( 28) CAACCAAT 1 chr3R:21387723-21387843 ( 95) CAACCAAT 1 chr2L:2400044-2400164 ( 65) CAACCAAT 1 chr2L:6547016-6547136 ( 54) CAGCCAAT 1 chr3L:12328852-12328972 ( 31) CAGCCAAT 1 chr2R:20991796-20991916 ( 71) CAGCCAAT 1 chr3L:8538507-8538627 ( 87) CAGCCAAT 1 chr3R:30617586-30617706 ( 86) CAGCCAAT 1 chrX:12615865-12615985 ( 12) CAGCCAAT 1 chr4:999931-1000051 ( 75) CAGCCAAT 1 chrX:4647461-4647581 ( 23) CAGCCAAT 1 chr2L:9082890-9083010 ( 51) CAGCCAAT 1 chrX:17405013-17405133 ( 64) CAGCCAAT 1 chr2R:11703115-11703235 ( 52) CAGCCAAT 1 chr2L:12689420-12689540 ( 113) CAGCCAAT 1 chr2L:3299774-3299894 ( 58) TAACCAAT 1 chr2L:11229070-11229190 ( 88) TAACCAAT 1 chr3R:24787907-24788027 ( 25) TAACCAAT 1 chrX:3808626-3808746 ( 2) TAACCAAT 1 chr2L:19606437-19606557 ( 103) TAGCCAAT 1 chr2R:16162095-16162215 ( 11) TAGCCAAT 1 chr4:639057-639177 ( 90) TAGCCAAT 1 chr4:996100-996220 ( 64) TAGCCAAT 1 chr2L:15109271-15109391 ( 83) CGACCAAT 1 chrX:5736444-5736564 ( 54) CGACCAAT 1 chr2R:13536607-13536727 ( 34) CGACCAAT 1 chr2L:10295435-10295555 ( 76) CGACCAAT 1 chr3R:16013754-16013874 ( 55) CGACCAAT 1 chrX:2435044-2435164 ( 64) CGGCCAAT 1 chr2L:5362467-5362587 ( 32) CGGCCAAT 1 chr3L:5594984-5595104 ( 86) CGGCCAAT 1 chr2R:14207969-14208089 ( 73) TGACCAAT 1 chr2R:13013006-13013126 ( 47) TGACCAAT 1 chr3L:20563882-20564002 ( 21) TGACCAAT 1 chr3L:5343020-5343140 ( 35) TGACCAAT 1 chr2R:8000303-8000423 ( 44) TGGCCAAT 1 chr3L:5423708-5423828 ( 15) TGGCCAAT 1 chr3R:30909155-30909275 ( 93) AAACCAAT 1 chr3L:18860574-18860694 ( 4) AAACCAAT 1 chrX:2037750-2037870 ( 13) AAACCAAT 1 chr3R:10542113-10542233 ( 43) AAACCAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARCCAAT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3653 E= 1.9e-012 -138 118 -1207 39 148 -1207 36 -1207 108 -1207 94 -1207 -1207 196 -1207 -1207 -1207 196 -1207 -1207 205 -1207 -1207 -1207 205 -1207 -1207 -1207 -1207 -1207 -1207 201 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARCCAAT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 1.9e-012 0.093023 0.581395 0.000000 0.325581 0.674419 0.000000 0.325581 0.000000 0.511628 0.000000 0.488372 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARCCAAT MEME-4 regular expression -------------------------------------------------------------------------------- [CT][AG][AG]CCAAT -------------------------------------------------------------------------------- Time 25.55 secs. ******************************************************************************** ******************************************************************************** MOTIF AWCCACCC MEME-5 width = 8 sites = 59 llr = 459 E-value = 1.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWCCACCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 6313a::1 pos.-specific C 3297:aa9 probability G :::::::: matrix T 15:::::: bits 2.0 *** 1.8 *** 1.6 * *** 1.4 * **** Relative 1.2 * **** Entropy 1.0 ****** (11.2 bits) 0.8 * ****** 0.6 * ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATCCACCC consensus CA A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCCACCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16784145-16784265 19 1.63e-05 ccacccacca atccaccc accaaccaca chr2R:21525989-21526109 21 1.63e-05 CACCACCCCC ATCCACCC AAAAATGGAG chr2L:19765550-19765670 8 1.63e-05 CATTTCC ATCCACCC CGATTCAATC chrX:4647461-4647581 39 1.63e-05 ATGCCAAGTT ATCCACCC TCGTCGATTA chrX:2681736-2681856 66 1.63e-05 ATGGCGCAGC ATCCACCC CCGGACGAGG chr3R:17029938-17030058 14 1.63e-05 TATCACCATT ATCCACCC CACAATCACG chr2L:10354001-10354121 44 1.63e-05 TCCTTAAAAA ATCCACCC CAAGTCGGCG chrX:5602441-5602561 26 3.22e-05 ccacccaccc aaccaccc acTTGCCTTG chrX:2037750-2037870 24 3.22e-05 AACCAATAAA AACCACCC ACAATAAGTG chrX:4600010-4600130 91 3.22e-05 AACCACCCAC AACCACCC TGCATCCCTG chr2R:8000303-8000423 99 6.44e-05 AATCGCCGGA ACCCACCC CAAATCAAGT chrX:7124613-7124733 98 6.44e-05 AATGCCAAAA ACCCACCC GCCAGCCAGC chrX:2440326-2440446 101 6.44e-05 gcaatccact atcaaccc ccagccaccc chr2R:18013926-18014046 86 6.44e-05 CTTTTAGCCG ACCCACCC CGACCCTTCC chr2R:11563041-11563161 4 6.44e-05 CAT ATCAACCC CCAGAAAGGC chr2R:22867762-22867882 87 6.44e-05 TTCGCAGGAT ATCAACCC ATCCCCCGCT chr3R:24787907-24788027 92 6.44e-05 TTTCAGGAGC ATCAACCC CCGAACGGTG chrX:20559706-20559826 107 6.44e-05 CCCCTTGCCC ACCCACCC GTCCGC chr3R:16983114-16983234 108 6.44e-05 GGATTACGCC ATCAACCC TCATC chr3R:10364438-10364558 31 8.17e-05 TTGGTGGCCG CTCCACCC ACCTCTCGCA chr2R:22239904-22240024 64 8.17e-05 GATATTCCTG CTCCACCC CACTCCCACC chr3R:11306067-11306187 48 8.17e-05 GTTAATTGAT CTCCACCC CAAAATGGGA chrX:3983137-3983257 81 8.17e-05 CATTCGGAGG CTCCACCC ACATCGGTAT chr3L:6117016-6117136 14 8.17e-05 ATTATGGTGG CTCCACCC ACCGTTGCCA chr3R:16406726-16406846 26 9.66e-05 CAGCGGCTAT AACAACCC GCGATCAATT chr3R:11272805-11272925 48 9.66e-05 GCATTCAGCA AACAACCC CGAGCTGAGG chrX:20536510-20536630 32 1.14e-04 ATACACCGTG CACCACCC CTTAACCCAT chr3R:13895766-13895886 20 1.14e-04 GGGGTTGAAG CACCACCC CTTAAGTGCT chr2L:16877839-16877959 67 1.14e-04 GACCCGAGGA CACCACCC TCCTCCCGGC chr2L:18783506-18783626 94 1.14e-04 CCAGACCAGA CACCACCC ACGGCCCCCT chr2L:18806141-18806261 37 1.14e-04 CACCCATCTG CACCACCC GACCAGCGAG chrX:2546392-2546512 7 1.14e-04 TTTAGC CACCACCC CCCCCCCCCC chrX:7161908-7162028 22 1.29e-04 TTGCCAAAAA ACCAACCC AGGACATATG chr3R:28579655-28579775 76 1.29e-04 GTTTAGCCAA ACCAACCC CAAAACACAG chr2L:12689420-12689540 91 1.29e-04 GTGATAGAAA ACCAACCC CTAAAACTTT chr3L:6111175-6111295 109 1.29e-04 TCGCAAGCAG ACCAACCC AGAC chr3R:18373038-18373158 46 1.79e-04 GATTCCATCC ATCCACCA CCACAACAAC chr3R:30026253-30026373 38 1.79e-04 TCAACCCTTG CCCCACCC CTCGGCTTTC chr2R:16162095-16162215 108 1.79e-04 GTGAAAATTG ATCCACCA GATCG chr2L:10295435-10295555 44 1.79e-04 CTCCCTCCAA ATCCACCA ATCGCAATCG chr3R:21388685-21388805 46 1.79e-04 TAGGTTTCGG ATCCACCA ATGGCAGGAG chr4:418817-418937 75 1.79e-04 CAAAAACTTG CCCCACCC AACCAACTAG chr2L:8853185-8853305 57 1.96e-04 TGCACCTTTT TTCCACCC GGATTCTGTG chrX:2655172-2655292 58 2.26e-04 GGCACCACCT AACCACCA TCTACCTCCC chrX:2435044-2435164 108 2.26e-04 GATTTCGAAA AACCACCA CCACA chr3R:11371011-11371131 105 2.43e-04 GAATTAAGGA TACCACCC GGTGTAAC chr2L:8791833-8791953 21 3.22e-04 GCGATTGGAT AGCCACCC CCAGAAGAGT chr3R:11310829-11310949 86 3.22e-04 ccatcccaag cccaaccc aatcccaatc chr2L:6532098-6532218 84 3.22e-04 AGGGAGGAAA CCCAACCC AAACTTTGGC chr3R:4843083-4843203 1 3.22e-04 . ATACACCC CCAAAATTTA chr2L:2391460-2391580 34 3.22e-04 ACATACATAT ATACACCC AATTAGGCGG chr3R:32072089-32072209 64 3.22e-04 TAAGAGCAGA ATACACCC CAATCTTAAT chr3L:21610689-21610809 109 3.71e-04 ATGCGGCGAC TTCAACCC CTTG chr3L:8646957-8647077 103 3.71e-04 CATTGGGCTT TTCAACCC CCTGTCATCG chr2L:12569610-12569730 87 4.00e-04 CTAAACATCA AAACACCC TTCCATGTCA chr3R:18368730-18368850 92 4.16e-04 AGGCTGTTGC CACCACCA ACTCCGCTGC chr2L:547315-547435 64 4.32e-04 CATCGGAACT TACAACCC CGGCGACAAA chr3R:21534419-21534539 10 4.93e-04 TCAGATCGT AGCAACCC TTAACACTCG chrX:610168-610288 25 4.93e-04 CCGAAATCCG ACCAACCA CATCCGGAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCCACCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16784145-16784265 1.6e-05 18_[+5]_94 chr2R:21525989-21526109 1.6e-05 20_[+5]_92 chr2L:19765550-19765670 1.6e-05 7_[+5]_105 chrX:4647461-4647581 1.6e-05 38_[+5]_74 chrX:2681736-2681856 1.6e-05 65_[+5]_47 chr3R:17029938-17030058 1.6e-05 13_[+5]_99 chr2L:10354001-10354121 1.6e-05 43_[+5]_69 chrX:5602441-5602561 3.2e-05 25_[+5]_87 chrX:2037750-2037870 3.2e-05 23_[+5]_89 chrX:4600010-4600130 3.2e-05 90_[+5]_22 chr2R:8000303-8000423 6.4e-05 98_[+5]_14 chrX:7124613-7124733 6.4e-05 97_[+5]_15 chrX:2440326-2440446 6.4e-05 100_[+5]_12 chr2R:18013926-18014046 6.4e-05 85_[+5]_27 chr2R:11563041-11563161 6.4e-05 3_[+5]_109 chr2R:22867762-22867882 6.4e-05 86_[+5]_26 chr3R:24787907-24788027 6.4e-05 91_[+5]_21 chrX:20559706-20559826 6.4e-05 106_[+5]_6 chr3R:16983114-16983234 6.4e-05 107_[+5]_5 chr3R:10364438-10364558 8.2e-05 30_[+5]_82 chr2R:22239904-22240024 8.2e-05 63_[+5]_49 chr3R:11306067-11306187 8.2e-05 47_[+5]_65 chrX:3983137-3983257 8.2e-05 80_[+5]_32 chr3L:6117016-6117136 8.2e-05 13_[+5]_99 chr3R:16406726-16406846 9.7e-05 25_[+5]_87 chr3R:11272805-11272925 9.7e-05 47_[+5]_65 chrX:20536510-20536630 0.00011 31_[+5]_81 chr3R:13895766-13895886 0.00011 19_[+5]_93 chr2L:16877839-16877959 0.00011 66_[+5]_46 chr2L:18783506-18783626 0.00011 93_[+5]_19 chr2L:18806141-18806261 0.00011 36_[+5]_76 chrX:2546392-2546512 0.00011 6_[+5]_106 chrX:7161908-7162028 0.00013 21_[+5]_91 chr3R:28579655-28579775 0.00013 75_[+5]_37 chr2L:12689420-12689540 0.00013 90_[+5]_22 chr3L:6111175-6111295 0.00013 108_[+5]_4 chr3R:18373038-18373158 0.00018 45_[+5]_67 chr3R:30026253-30026373 0.00018 37_[+5]_75 chr2R:16162095-16162215 0.00018 107_[+5]_5 chr2L:10295435-10295555 0.00018 43_[+5]_69 chr3R:21388685-21388805 0.00018 45_[+5]_67 chr4:418817-418937 0.00018 74_[+5]_38 chr2L:8853185-8853305 0.0002 56_[+5]_56 chrX:2655172-2655292 0.00023 57_[+5]_55 chrX:2435044-2435164 0.00023 107_[+5]_5 chr3R:11371011-11371131 0.00024 104_[+5]_8 chr2L:8791833-8791953 0.00032 20_[+5]_92 chr3R:11310829-11310949 0.00032 85_[+5]_27 chr2L:6532098-6532218 0.00032 83_[+5]_29 chr3R:4843083-4843203 0.00032 [+5]_112 chr2L:2391460-2391580 0.00032 33_[+5]_79 chr3R:32072089-32072209 0.00032 63_[+5]_49 chr3L:21610689-21610809 0.00037 108_[+5]_4 chr3L:8646957-8647077 0.00037 102_[+5]_10 chr2L:12569610-12569730 0.0004 86_[+5]_26 chr3R:18368730-18368850 0.00042 91_[+5]_21 chr2L:547315-547435 0.00043 63_[+5]_49 chr3R:21534419-21534539 0.00049 9_[+5]_103 chrX:610168-610288 0.00049 24_[+5]_88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCCACCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWCCACCC width=8 seqs=59 chr3R:16784145-16784265 ( 19) ATCCACCC 1 chr2R:21525989-21526109 ( 21) ATCCACCC 1 chr2L:19765550-19765670 ( 8) ATCCACCC 1 chrX:4647461-4647581 ( 39) ATCCACCC 1 chrX:2681736-2681856 ( 66) ATCCACCC 1 chr3R:17029938-17030058 ( 14) ATCCACCC 1 chr2L:10354001-10354121 ( 44) ATCCACCC 1 chrX:5602441-5602561 ( 26) AACCACCC 1 chrX:2037750-2037870 ( 24) AACCACCC 1 chrX:4600010-4600130 ( 91) AACCACCC 1 chr2R:8000303-8000423 ( 99) ACCCACCC 1 chrX:7124613-7124733 ( 98) ACCCACCC 1 chrX:2440326-2440446 ( 101) ATCAACCC 1 chr2R:18013926-18014046 ( 86) ACCCACCC 1 chr2R:11563041-11563161 ( 4) ATCAACCC 1 chr2R:22867762-22867882 ( 87) ATCAACCC 1 chr3R:24787907-24788027 ( 92) ATCAACCC 1 chrX:20559706-20559826 ( 107) ACCCACCC 1 chr3R:16983114-16983234 ( 108) ATCAACCC 1 chr3R:10364438-10364558 ( 31) CTCCACCC 1 chr2R:22239904-22240024 ( 64) CTCCACCC 1 chr3R:11306067-11306187 ( 48) CTCCACCC 1 chrX:3983137-3983257 ( 81) CTCCACCC 1 chr3L:6117016-6117136 ( 14) CTCCACCC 1 chr3R:16406726-16406846 ( 26) AACAACCC 1 chr3R:11272805-11272925 ( 48) AACAACCC 1 chrX:20536510-20536630 ( 32) CACCACCC 1 chr3R:13895766-13895886 ( 20) CACCACCC 1 chr2L:16877839-16877959 ( 67) CACCACCC 1 chr2L:18783506-18783626 ( 94) CACCACCC 1 chr2L:18806141-18806261 ( 37) CACCACCC 1 chrX:2546392-2546512 ( 7) CACCACCC 1 chrX:7161908-7162028 ( 22) ACCAACCC 1 chr3R:28579655-28579775 ( 76) ACCAACCC 1 chr2L:12689420-12689540 ( 91) ACCAACCC 1 chr3L:6111175-6111295 ( 109) ACCAACCC 1 chr3R:18373038-18373158 ( 46) ATCCACCA 1 chr3R:30026253-30026373 ( 38) CCCCACCC 1 chr2R:16162095-16162215 ( 108) ATCCACCA 1 chr2L:10295435-10295555 ( 44) ATCCACCA 1 chr3R:21388685-21388805 ( 46) ATCCACCA 1 chr4:418817-418937 ( 75) CCCCACCC 1 chr2L:8853185-8853305 ( 57) TTCCACCC 1 chrX:2655172-2655292 ( 58) AACCACCA 1 chrX:2435044-2435164 ( 108) AACCACCA 1 chr3R:11371011-11371131 ( 105) TACCACCC 1 chr2L:8791833-8791953 ( 21) AGCCACCC 1 chr3R:11310829-11310949 ( 86) CCCAACCC 1 chr2L:6532098-6532218 ( 84) CCCAACCC 1 chr3R:4843083-4843203 ( 1) ATACACCC 1 chr2L:2391460-2391580 ( 34) ATACACCC 1 chr3R:32072089-32072209 ( 64) ATACACCC 1 chr3L:21610689-21610809 ( 109) TTCAACCC 1 chr3L:8646957-8647077 ( 103) TTCAACCC 1 chr2L:12569610-12569730 ( 87) AAACACCC 1 chr3R:18368730-18368850 ( 92) CACCACCA 1 chr2L:547315-547435 ( 64) TACAACCC 1 chr3R:21534419-21534539 ( 10) AGCAACCC 1 chrX:610168-610288 ( 25) ACCAACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCCACCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.55909 E= 1.4e-001 141 8 -1253 -155 25 -22 -290 89 -183 186 -1253 -1253 34 144 -1253 -1253 205 -1253 -1253 -1253 -1253 196 -1253 -1253 -1253 196 -1253 -1253 -83 175 -1253 -1253 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCCACCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 1.4e-001 0.644068 0.271186 0.000000 0.084746 0.288136 0.220339 0.033898 0.457627 0.067797 0.932203 0.000000 0.000000 0.305085 0.694915 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.135593 0.864407 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCCACCC MEME-5 regular expression -------------------------------------------------------------------------------- [AC][TAC]C[CA]ACCC -------------------------------------------------------------------------------- Time 31.43 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:6111175-6111295 7.26e-02 120 chr3R:16632837-16632957 1.20e-01 58_[+2(6.17e-05)]_54 chr2R:15671636-15671756 5.82e-03 120 chr4:423462-423582 6.62e-02 57_[+2(1.50e-05)]_55 chr4:87418-87538 4.30e-02 120 chr2L:12689420-12689540 1.82e-04 3_[+1(1.41e-05)]_101_[+4(2.96e-05)] chrX:2143053-2143173 1.99e-01 120 chr4:996100-996220 1.75e-04 63_[+4(5.81e-05)]_49 chr3R:32072089-32072209 2.71e-03 99_[+3(4.84e-05)]_13 chr3R:32071815-32071935 2.24e-01 40_[+1(6.85e-05)]_72 chr2R:11703115-11703235 9.61e-03 51_[+4(2.96e-05)]_61 chr4:418817-418937 1.61e-01 120 chrX:17405013-17405133 1.08e-02 63_[+4(2.96e-05)]_49 chr3L:5891263-5891383 8.96e-02 120 chr3R:16013754-16013874 1.25e-01 54_[+4(7.33e-05)]_58 chr3R:21388685-21388805 1.07e-01 120 chrX:19535549-19535669 8.30e-03 120 chr2R:16235188-16235308 8.61e-01 120 chr3R:29767863-29767983 5.67e-01 120 chrX:4618994-4619114 3.19e-02 19_[+1(6.85e-05)]_93 chr2L:10354001-10354121 1.25e-03 14_[+3(1.65e-05)]_21_[+5(1.63e-05)]_\ 69 chr3R:10542113-10542233 1.08e-01 120 chrX:2546392-2546512 2.14e-03 36_[+1(2.79e-05)]_76 chr2R:5745303-5745423 6.42e-01 120 chr3L:5594984-5595104 2.12e-02 85_[+4(8.92e-05)]_27 chr2L:10295435-10295555 2.66e-02 75_[+4(7.33e-05)]_37 chrX:3808626-3808746 5.90e-02 1_[+4(4.35e-05)]_111 chr3R:17029938-17030058 3.40e-02 13_[+5(1.63e-05)]_99 chr2L:2400044-2400164 1.06e-01 64_[+4(1.44e-05)]_48 chr3R:16983114-16983234 8.30e-02 107_[+5(6.44e-05)]_5 chr3R:30030239-30030359 8.54e-02 120 chr2R:23644415-23644535 5.39e-01 120 chrX:15379187-15379307 3.13e-02 26_[+2(1.50e-05)]_86 chrX:20559706-20559826 9.38e-03 72_[+1(9.81e-05)]_26_[+5(6.44e-05)]_\ 6 chrX:610168-610288 4.46e-04 50_[+1(6.85e-05)]_22_[+3(4.84e-05)]_\ 32 chr2R:8270800-8270920 1.39e-03 120 chr3L:21818854-21818974 2.06e-01 10_[+2(6.17e-05)]_102 chr2L:9082890-9083010 7.34e-03 50_[+4(2.96e-05)]_29_[+1(9.81e-05)]_\ 25 chr2L:8747625-8747745 2.46e-02 120 chrX:4600010-4600130 8.53e-02 80_[+5(3.22e-05)]_2_[+5(3.22e-05)]_\ 22 chr2R:20424169-20424289 3.16e-01 120 chr3R:21456892-21457012 1.50e-01 61_[+3(6.53e-05)]_51 chrX:2681736-2681856 5.92e-04 65_[+5(1.63e-05)]_18_[+1(1.41e-05)]_\ 21 chrX:4647461-4647581 1.72e-05 22_[+4(2.96e-05)]_8_[+5(1.63e-05)]_\ 27_[+1(1.41e-05)]_39 chr4:999931-1000051 4.22e-04 74_[+4(2.96e-05)]_17_[+1(4.18e-05)]_\ 13 chrX:17765041-17765161 3.06e-02 120 chrX:9765679-9765799 1.35e-01 120 chr3L:8646957-8647077 1.02e-02 17_[+2(1.50e-05)]_95 chrX:1735330-1735450 2.44e-01 120 chr3R:11272805-11272925 7.70e-02 47_[+5(9.66e-05)]_65 chr3R:24787907-24788027 6.76e-03 24_[+4(4.35e-05)]_59_[+5(6.44e-05)]_\ 21 chr3R:18266810-18266930 1.10e-01 120 chr3R:14335637-14335757 8.68e-01 120 chrX:17412883-17413003 8.38e-02 4_[+1(4.18e-05)]_108 chrX:3809218-3809338 2.95e-04 29_[+1(9.81e-05)]_83 chrX:2037750-2037870 2.03e-04 23_[+5(3.22e-05)]_24_[+3(1.65e-05)]_\ 14_[+3(4.84e-05)]_35 chr3L:18860574-18860694 1.29e-03 120 chr3R:23296336-23296456 4.28e-02 120 chr3R:21077699-21077819 1.48e-01 120 chr3L:6117016-6117136 1.55e-01 13_[+5(8.17e-05)]_99 chr2L:5362467-5362587 8.34e-02 31_[+4(8.92e-05)]_81 chr2L:505130-505250 2.85e-01 120 chrX:5602441-5602561 7.23e-03 13_[+5(3.22e-05)]_4_[+5(3.22e-05)]_\ 87 chr2R:23094380-23094500 2.54e-01 62_[+2(9.26e-05)]_50 chr3R:19639322-19639442 2.51e-01 120 chr2L:13717263-13717383 9.27e-02 120 chr3R:21551688-21551808 1.14e-02 120 chr2L:18806141-18806261 1.13e-02 120 chr4:639057-639177 4.08e-02 89_[+4(5.81e-05)]_23 chrX:4600209-4600329 2.99e-02 76_[+1(4.18e-05)]_36 chr3L:5576629-5576749 8.13e-01 120 chr3L:5343020-5343140 7.31e-04 13_[+1(2.79e-05)]_51_[+2(6.17e-05)]_\ 40 chr3R:16385708-16385828 5.27e-01 120 chr3R:11337204-11337324 3.18e-01 120 chr3R:21563449-21563569 2.73e-02 120 chr2L:3685616-3685736 1.37e-01 120 chr3R:16410833-16410953 2.21e-03 77_[+1(1.41e-05)]_21_[+2(4.61e-05)]_\ 6 chr4:1097802-1097922 6.97e-02 6_[+2(1.50e-05)]_106 chrX:2435044-2435164 1.12e-02 63_[+4(8.92e-05)]_49 chr4:1098012-1098132 9.10e-01 120 chr2L:8817476-8817596 2.59e-01 120 chr2R:22867762-22867882 4.91e-03 86_[+5(6.44e-05)]_26 chr2R:14477685-14477805 1.82e-01 120 chr3R:17599858-17599978 2.50e-02 69_[+1(4.18e-05)]_43 chr2L:19765550-19765670 3.44e-02 7_[+5(1.63e-05)]_105 chr3R:30928786-30928906 7.80e-01 120 chrX:12615865-12615985 2.52e-03 11_[+4(2.96e-05)]_77_[+1(1.41e-05)]_\ 16 chr3R:30617586-30617706 8.26e-03 85_[+4(2.96e-05)]_27 chr3R:30909155-30909275 1.01e-02 120 chr2L:19769831-19769951 4.20e-03 120 chr3R:16406726-16406846 1.40e-01 25_[+5(9.66e-05)]_87 chr2R:15839074-15839194 7.33e-02 29_[+1(1.41e-05)]_83 chr2L:11288443-11288563 2.16e-01 120 chr3R:21387723-21387843 1.11e-02 94_[+4(1.44e-05)]_18 chrX:4526901-4527021 7.30e-02 120 chr2R:16162095-16162215 2.79e-06 10_[+4(5.81e-05)]_21_[+1(1.41e-05)]_\ 40_[+2(1.50e-05)]_25 chr3R:22053882-22054002 5.86e-04 105_[+2(1.50e-05)]_7 chr2R:11563041-11563161 6.56e-03 3_[+5(6.44e-05)]_109 chr2L:2391460-2391580 7.83e-02 120 chr2L:368825-368945 2.46e-03 36_[+1(9.81e-05)]_7_[+2(9.26e-05)]_\ 61 chr3L:371367-371487 6.13e-02 49_[+3(4.84e-05)]_63 chr3L:20563882-20564002 4.55e-02 120 chrX:17339820-17339940 1.09e-01 120 chr3R:17666630-17666750 2.22e-01 120 chrX:7768255-7768375 9.11e-01 120 chr2R:12249596-12249716 6.68e-04 8_[+2(4.61e-05)]_38_[+3(1.65e-05)]_\ [+3(1.65e-05)]_4_[+3(1.65e-05)]_38 chrX:3983137-3983257 2.00e-01 18_[+5(6.44e-05)]_54_[+5(8.17e-05)]_\ 32 chr3L:4086022-4086142 7.67e-01 120 chr2L:319904-320024 9.11e-02 38_[+2(1.50e-05)]_74 chr3L:8538507-8538627 5.00e-02 86_[+4(2.96e-05)]_26 chr3L:6990437-6990557 3.37e-01 120 chr3R:4843083-4843203 4.18e-01 120 chr3R:13923766-13923886 1.68e-02 8_[+3(4.84e-05)]_38_[+2(6.17e-05)]_\ 58 chr3R:21558034-21558154 1.03e-01 52_[+3(1.65e-05)]_[+3(4.84e-05)]_14_\ [+3(4.84e-05)]_30 chr2R:13536607-13536727 3.06e-03 10_[+1(2.79e-05)]_15_[+4(7.33e-05)]_\ 79 chr2L:20237017-20237137 4.90e-01 120 chr4:1101926-1102046 3.25e-01 120 chr3R:11343625-11343745 4.93e-01 120 chr2L:11229070-11229190 2.42e-02 87_[+4(4.35e-05)]_25 chr3R:21534419-21534539 2.92e-01 120 chrX:7368526-7368646 4.70e-02 36_[+3(4.84e-05)]_16_[+3(1.65e-05)]_\ 52 chrX:7568488-7568608 2.37e-02 112_[+2(1.50e-05)] chr3R:11306067-11306187 3.75e-03 47_[+5(8.17e-05)]_[+1(1.41e-05)]_57 chrX:18575289-18575409 5.59e-01 120 chr3R:16396693-16396813 2.88e-02 4_[+1(2.79e-05)]_108 chr2L:6701-6821 7.68e-03 84_[+1(1.41e-05)]_28 chr3L:5423708-5423828 3.62e-02 120 chr3R:23207394-23207514 1.13e-02 24_[+1(1.41e-05)]_88 chr3L:1929099-1929219 2.51e-03 25_[+3(4.84e-05)]_60_[+1(6.85e-05)]_\ 19 chr2R:10239193-10239313 8.83e-03 6_[+2(9.26e-05)]_57_[+3(1.65e-05)]_\ 6_[+3(4.84e-05)]_27 chr2R:8381444-8381564 3.88e-04 27_[+4(1.44e-05)]_85 chr2R:9983586-9983706 8.16e-01 120 chr2R:20991796-20991916 6.81e-02 70_[+4(2.96e-05)]_42 chr2L:9071220-9071340 1.75e-01 120 chr3L:12328852-12328972 1.32e-03 6_[+1(1.41e-05)]_16_[+4(2.96e-05)]_\ 82 chrX:9288362-9288482 1.36e-01 120 chr3R:16427673-16427793 3.74e-02 5_[+2(9.26e-05)]_2_[+3(8.06e-05)]_\ 97 chr2R:20933745-20933865 1.25e-02 42_[+1(2.79e-05)]_70 chr2L:6532098-6532218 1.48e-01 120 chr2R:22239904-22240024 7.58e-02 63_[+5(8.17e-05)]_49 chrX:2655172-2655292 7.92e-02 120 chr2L:8799116-8799236 1.99e-01 120 chr3L:4843584-4843704 1.53e-01 53_[+2(4.61e-05)]_59 chr2R:18013926-18014046 3.86e-02 85_[+5(6.44e-05)]_27 chr3R:20449619-20449739 6.18e-01 120 chr3R:11310829-11310949 3.84e-01 120 chr3L:12310592-12310712 3.58e-01 120 chr3R:4871773-4871893 3.16e-03 9_[+1(6.85e-05)]_86_[+3(6.53e-05)]_\ 9 chr2L:18783506-18783626 7.33e-03 13_[+3(8.06e-05)]_99 chrX:17812367-17812487 1.68e-01 35_[+3(1.65e-05)]_[+3(1.65e-05)]_\ [+3(4.84e-05)]_[+3(6.53e-05)]_10_[+3(1.65e-05)]_[+3(1.65e-05)]_\ [+3(4.84e-05)]_19 chr2L:12569610-12569730 1.07e-02 1_[+1(2.79e-05)]_111 chr2L:16877839-16877959 9.81e-02 120 chrX:9727435-9727555 2.46e-01 120 chr4:412060-412180 2.39e-01 120 chrX:12621751-12621871 2.01e-01 120 chr2L:8853185-8853305 5.43e-02 120 chr3R:11334418-11334538 7.65e-01 120 chr4:428372-428492 1.19e-02 51_[+1(6.85e-05)]_61 chr3R:11371011-11371131 2.62e-01 120 chrX:2440326-2440446 2.91e-02 100_[+5(6.44e-05)]_12 chr3L:21610689-21610809 7.61e-02 120 chr3R:8368708-8368828 1.94e-02 55_[+2(1.50e-05)]_[+2(4.61e-05)]_49 chr2R:25244690-25244810 1.44e-01 120 chr3R:13895766-13895886 3.56e-02 60_[+1(9.81e-05)]_52 chrX:1535435-1535555 1.27e-01 120 chrX:7230762-7230882 1.92e-01 120 chr2R:23048345-23048465 4.12e-01 120 chr2L:19606437-19606557 8.20e-02 102_[+4(5.81e-05)]_10 chrX:4089151-4089271 3.38e-01 120 chr3R:16678085-16678205 7.74e-02 7_[+1(9.81e-05)]_105 chrX:5736444-5736564 3.74e-02 53_[+4(7.33e-05)]_59 chr2R:20853756-20853876 3.60e-02 108_[+3(4.84e-05)]_4 chr3R:13949721-13949841 4.23e-01 120 chr3R:18269941-18270061 2.29e-01 120 chr3R:28579655-28579775 3.00e-02 120 chr3L:12296264-12296384 4.19e-01 120 chr2R:23636597-23636717 9.86e-02 120 chr3L:10409640-10409760 8.51e-02 120 chr3R:21557218-21557338 9.20e-01 120 chr2R:14576520-14576640 8.08e-01 120 chrX:4521016-4521136 2.96e-02 120 chr2R:5749454-5749574 1.45e-01 120 chrX:7159370-7159490 3.49e-03 70_[+1(1.41e-05)]_42 chr2R:21525989-21526109 3.42e-04 20_[+5(1.63e-05)]_[+1(6.85e-05)]_84 chr2L:8791833-8791953 3.31e-01 120 chr3R:20055945-20056065 1.29e-01 27_[+2(9.26e-05)]_85 chr3R:16010067-16010187 2.18e-01 120 chr3L:12447202-12447322 1.02e-01 120 chr2L:15109271-15109391 7.36e-02 82_[+4(7.33e-05)]_30 chrX:4554833-4554953 6.99e-01 120 chr2L:547315-547435 1.33e-02 120 chrX:589076-589196 5.89e-01 120 chr2R:14814347-14814467 1.55e-02 75_[+3(4.84e-05)]_37 chr3R:22454586-22454706 5.07e-01 120 chr2L:19605502-19605622 4.23e-01 120 chr2R:8289100-8289220 2.34e-02 34_[+2(1.50e-05)]_78 chr3L:6934952-6935072 1.31e-01 64_[+1(4.18e-05)]_48 chr2L:20175109-20175229 1.25e-02 40_[+1(1.41e-05)]_72 chrX:7124613-7124733 6.28e-02 97_[+5(6.44e-05)]_15 chrX:7631465-7631585 9.77e-01 120 chr2L:8881219-8881339 3.54e-02 120 chr3L:21458871-21458991 1.34e-01 98_[+3(4.84e-05)]_14 chrX:7161908-7162028 2.64e-03 120 chr3R:6853115-6853235 1.13e-02 120 chr3R:7136022-7136142 1.27e-02 42_[+2(1.50e-05)]_70 chr3L:4159416-4159536 4.64e-02 120 chr2R:11565710-11565830 2.63e-01 120 chrX:4061671-4061791 6.95e-01 120 chrX:20709826-20709946 9.26e-01 120 chr3L:17503777-17503897 7.36e-03 74_[+2(1.50e-05)]_38 chr3R:10364438-10364558 1.98e-02 30_[+5(8.17e-05)]_82 chr3R:29758865-29758985 6.98e-01 120 chr3R:25189306-25189426 6.56e-01 120 chr3R:29520387-29520507 9.95e-02 74_[+3(1.65e-05)]_2_[+3(6.53e-05)]_\ 28 chr2R:8029501-8029621 3.35e-01 120 chr3R:16784145-16784265 7.15e-03 6_[+5(3.22e-05)]_4_[+5(1.63e-05)]_\ 14_[+5(6.44e-05)]_72 chr2R:12460149-12460269 7.48e-05 9_[+2(1.50e-05)]_71_[+1(1.41e-05)]_\ 24 chrX:19546805-19546925 1.44e-05 51_[+3(6.53e-05)]_31_[+4(1.44e-05)]_\ 10_[+1(1.41e-05)]_4 chr3R:4901352-4901472 2.52e-02 74_[+3(4.84e-05)]_38 chr2L:3299774-3299894 1.75e-02 57_[+4(4.35e-05)]_55 chr4:978639-978759 7.21e-02 120 chr3R:30026253-30026373 2.06e-01 120 chr2L:6547016-6547136 6.39e-03 53_[+4(2.96e-05)]_21_[+3(6.53e-05)]_\ 30 chr2R:13013006-13013126 5.27e-02 120 chrX:16231426-16231546 5.25e-01 120 chr2L:2448660-2448780 1.67e-01 120 chr2R:20956205-20956325 9.26e-04 71_[+3(6.53e-05)]_41 chrX:20330430-20330550 5.32e-01 120 chr3R:14096953-14097073 1.36e-01 120 chr2L:585405-585525 2.23e-02 81_[+3(4.84e-05)]_31 chr2L:18794123-18794243 5.96e-01 120 chr2L:5652-5772 3.83e-02 38_[+1(1.41e-05)]_74 chrX:12987094-12987214 9.25e-01 120 chr2L:1967473-1967593 5.53e-03 33_[+1(1.41e-05)]_79 chr2R:25109775-25109895 7.12e-02 69_[+2(4.61e-05)]_43 chr3R:18368730-18368850 1.30e-01 120 chr2R:14207969-14208089 2.36e-01 120 chr2L:21331658-21331778 3.06e-01 120 chr2R:14829313-14829433 6.08e-01 120 chr2R:23626388-23626508 2.25e-02 81_[+2(4.61e-05)]_31 chr3R:18373038-18373158 6.26e-03 84_[+4(1.44e-05)]_28 chr3L:22132833-22132953 5.99e-02 120 chrX:8696334-8696454 3.02e-01 52_[+3(6.53e-05)]_60 chrX:20536510-20536630 1.25e-02 120 chr2R:9985236-9985356 2.83e-03 40_[+1(1.41e-05)]_72 chr2R:8000303-8000423 2.96e-04 98_[+5(6.44e-05)]_14 chr2L:1944832-1944952 1.97e-01 120 chr3R:11263700-11263820 3.93e-01 120 chr3L:14122166-14122286 1.30e-01 32_[+3(6.53e-05)]_16_[+3(4.84e-05)]_\ 56 chr2R:17820917-17821037 1.75e-02 30_[+3(1.65e-05)]_2_[+3(1.65e-05)]_\ [+3(1.65e-05)]_64 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************