******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Nf-YB.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr4:384675-384795 1.0000 120 chr4:423470-423590 1.0000 120 chr3L:6111137-6111257 1.0000 120 chr2L:3612199-3612319 1.0000 120 chr2L:7359309-7359429 1.0000 120 chrX:17765082-17765202 1.0000 120 chr3R:16632837-16632957 1.0000 120 chr3L:5846341-5846461 1.0000 120 chrX:2143050-2143170 1.0000 120 chr3R:16013753-16013873 1.0000 120 chr3R:6874550-6874670 1.0000 120 chr2R:11703135-11703255 1.0000 120 chr3R:21388692-21388812 1.0000 120 chr2L:18793398-18793518 1.0000 120 chr2R:25051509-25051629 1.0000 120 chr2R:15671624-15671744 1.0000 120 chr2L:12689505-12689625 1.0000 120 chr3R:6725281-6725401 1.0000 120 chr3R:21456933-21457053 1.0000 120 chr2L:18774200-18774320 1.0000 120 chrX:3809229-3809349 1.0000 120 chr4:87415-87535 1.0000 120 chr3L:5891241-5891361 1.0000 120 chr2R:23644428-23644548 1.0000 120 chr3L:21818826-21818946 1.0000 120 chr3L:5595000-5595120 1.0000 120 chrX:17405031-17405151 1.0000 120 chrX:4618978-4619098 1.0000 120 chr4:996094-996214 1.0000 120 chr2L:8817488-8817608 1.0000 120 chr3R:11272810-11272930 1.0000 120 chr4:418863-418983 1.0000 120 chr3R:13929060-13929180 1.0000 120 chr3R:32072085-32072205 1.0000 120 chrX:4521019-4521139 1.0000 120 chr3L:10528385-10528505 1.0000 120 chr3R:16410847-16410967 1.0000 120 chr3R:18118373-18118493 1.0000 120 chrX:8447301-8447421 1.0000 120 chr3R:32071815-32071935 1.0000 120 chrX:19535516-19535636 1.0000 120 chr2L:8820671-8820791 1.0000 120 chrX:3808585-3808705 1.0000 120 chr2R:11533407-11533527 1.0000 120 chr3L:22821497-22821617 1.0000 120 chr2L:19772578-19772698 1.0000 120 chr2R:8270793-8270913 1.0000 120 chr3R:6865027-6865147 1.0000 120 chrX:20559702-20559822 1.0000 120 chr2R:23572587-23572707 1.0000 120 chr2L:3589003-3589123 1.0000 120 chr2R:22286103-22286223 1.0000 120 chr3R:21392372-21392492 1.0000 120 chr3R:6831851-6831971 1.0000 120 chr2R:23048317-23048437 1.0000 120 chr3R:29701890-29702010 1.0000 120 chr3R:28576696-28576816 1.0000 120 chr3R:21564684-21564804 1.0000 120 chrX:5602444-5602564 1.0000 120 chr3R:21474477-21474597 1.0000 120 chr3L:6990382-6990502 1.0000 120 chr2L:2488378-2488498 1.0000 120 chr3L:22132800-22132920 1.0000 120 chr3R:11372042-11372162 1.0000 120 chr2L:10354055-10354175 1.0000 120 chr2R:16235183-16235303 1.0000 120 chr2L:503851-503971 1.0000 120 chr3R:16406794-16406914 1.0000 120 chr3R:30030279-30030399 1.0000 120 chr3R:16983123-16983243 1.0000 120 chr2R:25122148-25122268 1.0000 120 chrX:2681701-2681821 1.0000 120 chr2R:23094371-23094491 1.0000 120 chr2L:8747578-8747698 1.0000 120 chr3L:19670949-19671069 1.0000 120 chrX:9765728-9765848 1.0000 120 chr3R:8211240-8211360 1.0000 120 chr3R:4895714-4895834 1.0000 120 chr2L:10295452-10295572 1.0000 120 chrX:4647467-4647587 1.0000 120 chr2R:14477662-14477782 1.0000 120 chr3R:17029974-17030094 1.0000 120 chr3R:17599810-17599930 1.0000 120 chrX:4600062-4600182 1.0000 120 chr3R:8145871-8145991 1.0000 120 chrX:2435059-2435179 1.0000 120 chr2R:5745320-5745440 1.0000 120 chr3R:18266798-18266918 1.0000 120 chrX:16175221-16175341 1.0000 120 chrX:16236590-16236710 1.0000 120 chr3L:371381-371501 1.0000 120 chr3L:14088413-14088533 1.0000 120 chr3R:21470523-21470643 1.0000 120 chr3L:12447238-12447358 1.0000 120 chr3R:24787839-24787959 1.0000 120 chrX:15379177-15379297 1.0000 120 chr2R:9985237-9985357 1.0000 120 chr3L:12600405-12600525 1.0000 120 chr2L:15109304-15109424 1.0000 120 chrX:610176-610296 1.0000 120 chr2R:14814401-14814521 1.0000 120 chr3R:21528660-21528780 1.0000 120 chrX:20629499-20629619 1.0000 120 chr3L:8646944-8647064 1.0000 120 chr3R:23718430-23718550 1.0000 120 chr3R:22053896-22054016 1.0000 120 chr2R:11470348-11470468 1.0000 120 chr2L:505130-505250 1.0000 120 chrX:17772017-17772137 1.0000 120 chrX:7230809-7230929 1.0000 120 chr3R:23131931-23132051 1.0000 120 chr2L:591665-591785 1.0000 120 chr2R:20955564-20955684 1.0000 120 chr2R:23049596-23049716 1.0000 120 chr3R:30928760-30928880 1.0000 120 chr2R:9976332-9976452 1.0000 120 chr3L:20563893-20564013 1.0000 120 chr3R:29706041-29706161 1.0000 120 chr2L:9082888-9083008 1.0000 120 chr2R:11553225-11553345 1.0000 120 chr3R:6879482-6879602 1.0000 120 chrX:2546406-2546526 1.0000 120 chr2L:2400021-2400141 1.0000 120 chrX:7568499-7568619 1.0000 120 chr4:421921-422041 1.0000 120 chrX:7631531-7631651 1.0000 120 chrX:7625682-7625802 1.0000 120 chr2L:21806490-21806610 1.0000 120 chr2R:15835978-15836098 1.0000 120 chr3R:11256955-11257075 1.0000 120 chr2L:599679-599799 1.0000 120 chr2L:6532150-6532270 1.0000 120 chr2L:5362433-5362553 1.0000 120 chrX:4399756-4399876 1.0000 120 chrX:7628470-7628590 1.0000 120 chr3R:13947562-13947682 1.0000 120 chr3R:21077662-21077782 1.0000 120 chr2R:11472108-11472228 1.0000 120 chrX:17758270-17758390 1.0000 120 chr2R:12460068-12460188 1.0000 120 chr3R:6986607-6986727 1.0000 120 chr3L:12442258-12442378 1.0000 120 chr3R:13949699-13949819 1.0000 120 chr2R:11563051-11563171 1.0000 120 chr3R:21387734-21387854 1.0000 120 chr3R:16678143-16678263 1.0000 120 chr4:1097792-1097912 1.0000 120 chr3R:16385766-16385886 1.0000 120 chr3R:23304980-23305100 1.0000 120 chr2R:13013011-13013131 1.0000 120 chrX:20709816-20709936 1.0000 120 chrX:4476833-4476953 1.0000 120 chr3L:10409698-10409818 1.0000 120 chrX:4089043-4089163 1.0000 120 chr2R:22867760-22867880 1.0000 120 chr2R:9005723-9005843 1.0000 120 chr2R:20956194-20956314 1.0000 120 chr2R:20954909-20955029 1.0000 120 chr3R:8368675-8368795 1.0000 120 chr2L:3685610-3685730 1.0000 120 chr4:1097991-1098111 1.0000 120 chrX:16244145-16244265 1.0000 120 chr3L:373017-373137 1.0000 120 chrX:2037737-2037857 1.0000 120 chr2L:3617723-3617843 1.0000 120 chrX:4554880-4555000 1.0000 120 chr3R:8685116-8685236 1.0000 120 chr3R:23296249-23296369 1.0000 120 chr2L:19769834-19769954 1.0000 120 chr3R:23199088-23199208 1.0000 120 chr3L:21462590-21462710 1.0000 120 chr3R:16418223-16418343 1.0000 120 chr3R:30909191-30909311 1.0000 120 chr2R:18013888-18014008 1.0000 120 chrX:7512888-7513008 1.0000 120 chr2R:19263596-19263716 1.0000 120 chr3R:14709625-14709745 1.0000 120 chrX:16912097-16912217 1.0000 120 chrX:12615861-12615981 1.0000 120 chr2L:10032477-10032597 1.0000 120 chr3R:11343552-11343672 1.0000 120 chr2L:368805-368925 1.0000 120 chr2R:23626356-23626476 1.0000 120 chr3L:12328840-12328960 1.0000 120 chrX:4412725-4412845 1.0000 120 chr3R:8686602-8686722 1.0000 120 chr3L:1738900-1739020 1.0000 120 chr3R:17602028-17602148 1.0000 120 chr3L:1929089-1929209 1.0000 120 chrX:16209834-16209954 1.0000 120 chr2L:7303400-7303520 1.0000 120 chr3R:16010058-16010178 1.0000 120 chr2R:24812111-24812231 1.0000 120 chr2L:585462-585582 1.0000 120 chr3R:16000674-16000794 1.0000 120 chrX:1162063-1162183 1.0000 120 chr3R:17666631-17666751 1.0000 120 chrX:7161860-7161980 1.0000 120 chr3R:23207417-23207537 1.0000 120 chr3L:4843550-4843670 1.0000 120 chrX:4589135-4589255 1.0000 120 chr2L:18783486-18783606 1.0000 120 chr3R:30617605-30617725 1.0000 120 chr3R:15616855-15616975 1.0000 120 chr3R:21551663-21551783 1.0000 120 chr3R:20846907-20847027 1.0000 120 chr2L:319863-319983 1.0000 120 chr2R:11489713-11489833 1.0000 120 chr2L:2448661-2448781 1.0000 120 chr2L:19765532-19765652 1.0000 120 chr3R:21534370-21534490 1.0000 120 chr3L:4159437-4159557 1.0000 120 chr2L:1967449-1967569 1.0000 120 chr4:426131-426251 1.0000 120 chr2R:15839053-15839173 1.0000 120 chr3R:29767786-29767906 1.0000 120 chr4:978602-978722 1.0000 120 chr3R:26081285-26081405 1.0000 120 chrX:8637113-8637233 1.0000 120 chrX:17339817-17339937 1.0000 120 chr2L:18806144-18806264 1.0000 120 chrX:7368474-7368594 1.0000 120 chr3R:8702365-8702485 1.0000 120 chrX:7768271-7768391 1.0000 120 chr4:428373-428493 1.0000 120 chr3R:7961451-7961571 1.0000 120 chr3L:21610708-21610828 1.0000 120 chr2L:11345193-11345313 1.0000 120 chr3R:6803904-6804024 1.0000 120 chr3R:21471319-21471439 1.0000 120 chr3L:6117066-6117186 1.0000 120 chr3R:6853111-6853231 1.0000 120 chr3R:8134639-8134759 1.0000 120 chr2R:5732330-5732450 1.0000 120 chr3R:11310801-11310921 1.0000 120 chr3R:14335673-14335793 1.0000 120 chrX:4601529-4601649 1.0000 120 chr2R:25068567-25068687 1.0000 120 chr2R:25119562-25119682 1.0000 120 chr3L:6438907-6439027 1.0000 120 chr3R:16427625-16427745 1.0000 120 chr2L:18364531-18364651 1.0000 120 chr2L:8799135-8799255 1.0000 120 chr3L:10257975-10258095 1.0000 120 chr2R:25244651-25244771 1.0000 120 chr3L:12589044-12589164 1.0000 120 chr3R:21459055-21459175 1.0000 120 chr3R:4843110-4843230 1.0000 120 chrX:9727438-9727558 1.0000 120 chrX:5540718-5540838 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Nf-YB/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Nf-YB.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.25 C 0.247 G 0.245 T 0.257 Background letter frequencies (from file dataset with add-one prior applied): A 0.25 C 0.247 G 0.245 T 0.257 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ATTGGYTG MEME-1 width = 8 sites = 168 llr = 1082 E-value = 2.3e-033 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTGGYTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 82:::1:2 pos.-specific C :1:::521 probability G 2::9a:37 matrix T :7a1:45: bits 2.0 * * 1.8 * * 1.6 *** 1.4 * *** Relative 1.2 * *** Entropy 1.0 * *** (9.3 bits) 0.8 ***** 0.6 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATTGGCTG consensus TG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGYTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:25119562-25119682 67 1.54e-05 CGTTTAGTTT ATTGGCTG CCTTTTAAGA chrX:7368474-7368594 34 1.54e-05 CAGTCGCACG ATTGGCTG TCCTCGCACT chrX:16912097-16912217 69 1.54e-05 GCTGGAAGCG ATTGGCTG GCGTGTGAAT chr3R:23296249-23296369 95 1.54e-05 CCAAAGTGGG ATTGGCTG CCGCCTCTCA chr3L:20563893-20564013 64 1.54e-05 ATAGTTTGTT ATTGGCTG GCTTTCGAAA chr3R:8145871-8145991 105 1.54e-05 TTGGTTTCCC ATTGGCTG AACATATG chr3L:5595000-5595120 46 1.54e-05 GAGCTTTTCA ATTGGCTG TAGATAAGCT chr3L:21818826-21818946 41 1.54e-05 ATAACTCTTG ATTGGCTG TGAAACTCTC chrX:3809229-3809349 9 1.54e-05 CGTTCCGG ATTGGCTG GTCGAAATGG chr2L:18793398-18793518 110 1.54e-05 TGGCACCCTC ATTGGCTG CAA chr3R:4843110-4843230 112 3.15e-05 GCGGCTGGCA ATTGGTTG G chrX:8637113-8637233 109 3.15e-05 CGTTATTTGT ATTGGTTG CAAT chr2L:368805-368925 74 3.15e-05 GAGCTCTTCG ATTGGTTG ACTTCGTCGA chr3R:8368675-8368795 91 3.15e-05 GCGCATTttg attggttg gttggttgtt chr4:1097792-1097912 60 3.15e-05 CTTTGTGGCT ATTGGTTG ATTTCGAGGC chr2R:23049596-23049716 90 3.15e-05 TTATACGAGT ATTGGTTG CCAGAACGCC chr3R:22053896-22054016 94 3.15e-05 CACTAACCTG ATTGGTTG AGTACACATA chrX:15379177-15379297 39 3.15e-05 GTGCCCTTTG ATTGGTTG CCCGATGGGA chr2R:14477662-14477782 63 3.15e-05 AGCGGCTCCC ATTGGTTG AGTATTCTCC chr2R:23094371-23094491 74 3.15e-05 GCGATCTGCG ATTGGTTG CTGCTCCTCC chr2L:8820671-8820791 62 3.15e-05 GCCCCACTCA ATTGGTTG TATCCGCCCA chr3R:13929060-13929180 86 3.15e-05 GAGTCTGCTC ATTGGTTG GTAATTTCTG chr2R:9005723-9005843 65 4.61e-05 CTCACAGCTG ATTGGCGG CACAAGGTGT chr3R:23718430-23718550 72 4.61e-05 ATTAGACGAC ATTGGCGG TTCTCTAAGG chr2R:9985237-9985357 63 4.61e-05 ACTCATCCCC ATTGGCGG CTGGGAGAGT chr3L:6990382-6990502 54 4.61e-05 AAACGAGCCA ATTGGCGG CATTGCCCGA chr3R:8686602-8686722 71 7.63e-05 TGATATTTTT ATTGGTGG TAATCGCATT chrX:4476833-4476953 85 7.63e-05 CCGAGTCGCC ATTGGTGG TCTTGGCTTT chr3R:21077662-21077782 28 7.63e-05 TTGGATTGTG ATTGGTGG CTCCATTGGC chr3R:29706041-29706161 95 7.63e-05 GGCCGCAATG ATTGGTGG GGTGTTTTGT chr3L:8646944-8647064 33 7.63e-05 GTTGATCCTG ATTGGTGG AACACATATC chr2R:8270793-8270913 102 7.63e-05 GAGCGTGGGT ATTGGTGG GTGGGCTGCG chr2L:8817488-8817608 26 7.63e-05 CATAATTCAC ATTGGCCG CAGTCAGCGC chr3L:6111137-6111257 28 7.63e-05 CTCACTGCTG ATTGGTGG ACGCCAGTCG chr2L:319863-319983 82 9.17e-05 GTTAGATTTG ATTGGTCG AGTGCATGAC chr2L:7303400-7303520 56 9.17e-05 CTCTCACCTT ATTGGTCG ACCAGGTCCA chr3R:30030279-30030399 64 9.17e-05 CGACTGCTGC ATTGGTCG ATAACGTCAA chr3R:6865027-6865147 82 9.17e-05 GGCGATTTCA ATTGGTCG CACATCGAGG chr2L:18774200-18774320 56 9.17e-05 CCATTGTTTG ATTGGTCG ATTGAAGAGT chr4:423470-423590 52 9.17e-05 GCGCTATTTG ATTGGTCG GCAGAGTTCG chr3L:4159437-4159557 107 1.22e-04 CATGGATCCT ATTGGATG AAGTCT chrX:4589135-4589255 71 1.22e-04 GGGACCTCGA ATTGGATG CAAAGTGGAG chr3R:17602028-17602148 79 1.22e-04 GATTCACTtg gttggctg gtctgacaag chr3R:23131931-23132051 56 1.22e-04 GCCCGTTTTG GTTGGCTG ATCGGGCCAA chrX:20629499-20629619 40 1.22e-04 CCCATTTGCT GTTGGCTG CTGCTCTAAG chr2R:25122148-25122268 49 1.22e-04 GCAGATTTTG GTTGGCTG CACGCACACA chr2L:19772578-19772698 12 1.22e-04 CTCGTTGTTT GTTGGCTG GGAAAGGACC chrX:19535516-19535636 46 1.22e-04 GTTTCGTTTG GTTGGCTG Gcagtaccac chrX:17405031-17405151 100 1.22e-04 TATCGCGGTG ATTGGATG CATGTCCGTG chr3R:21456933-21457053 40 1.22e-04 CACGGTATCC ATTGGATG CGTTAAGCGG chr2L:7359309-7359429 86 1.22e-04 ACTTCTTCTG GTTGGCTG GCAGTCACTA chr3L:21610708-21610828 73 1.53e-04 AGGACCTCGG ATTGGCTA TGCGGCGACT chr2R:18013888-18014008 59 1.53e-04 ACATGCAGAC ATTGGCTA TCGTTTGGCG chr4:996094-996214 52 1.53e-04 TCAAAATCGG ATTGGCTA AAATATTTGT chrX:17339817-17339937 52 1.69e-04 GCTGTTTTGG GTTGGTTG TCATCGGTGC chr3R:17599810-17599930 51 1.69e-04 GGCTGGGCTC GTTGGTTG GATGGGCGTC chr3R:16410847-16410967 95 1.69e-04 ATGAAGGGTG GTTGGTTG CCCTGATGAT chr3L:10528385-10528505 101 1.69e-04 ACCAATtttg gttggttg gattttgggt chr4:384675-384795 44 1.69e-04 TGGCTCTCTG GTTGGTTG GCGGGCAAGC chr3R:30617605-30617725 72 2.01e-04 TATGCCAGCC AATGGTTG AGCTCCTGGC chr2R:23626356-23626476 112 2.01e-04 TTGGCCGTCG AATGGTTG G chrX:7512888-7513008 79 2.01e-04 TTCGTAGGGT ATTGGTTA TTGAGTATCG chr3R:23199088-23199208 47 2.01e-04 TATTCTTACG ATTGGTTA CAAAACAACT chrX:5602444-5602564 109 2.16e-04 TGCGCGTCAT ATTGGCTC AGCT chr3R:16632837-16632957 61 2.16e-04 TGGCATTTTG ATTGGCTC GGCACGCACT chr2L:3617723-3617843 23 2.77e-04 CTTAGCGTTA ACTGGCTG CTATCATCAA chr2R:22867760-22867880 74 2.77e-04 GTTCGCATAG ATTGGTTC GCAGGATATC chr2R:11472108-11472228 47 2.77e-04 TGTTGTTGCT GTTGGCGG CGGAGCTGAT chrX:7568499-7568619 104 2.77e-04 GCGTCTTTTG ATTGGTTC AAGTTGAGC chr2L:2400021-2400141 8 2.77e-04 ACCTCTG ATTGGTTC TTTTTGGCCA chr2R:11553225-11553345 37 2.77e-04 GTGACATTTT ATTGGAGG CCCAGAAACC chr2L:2488378-2488498 48 2.77e-04 CGACTGCCTG ACTGGCTG TTCGAGTCGG chr3R:21474477-21474597 82 2.77e-04 CACTTGGCCA ACTGGCTG GATATCTGCA chr3R:21564684-21564804 104 2.77e-04 CTTGCTGGCT ACTGGCTG AGTGCACAA chr2R:23048317-23048437 64 2.77e-04 GCGCTTTTCG ATTGGAGG GGCCCACTAA chr3R:20846907-20847027 106 3.06e-04 CTGGGATGCA AATGGCGG CGATGGG chr3R:16385766-16385886 71 3.06e-04 CACACATAAA AATGGCGG CGTTGGAAAA chrX:4647467-4647587 71 3.06e-04 TAGCTGACAA AATGGCGG AGATTTTGAT chr3R:16013753-16013873 91 3.06e-04 ACAGTTGCTC AATGGCGG CATCGATAGT chrX:5540718-5540838 32 3.66e-04 TGGAAATTAG ACTGGTTG CCCAATCTGG chr3L:12589044-12589164 52 3.66e-04 GGCCAACCAG ATTGGACG GCGATCTGGC chr3L:6438907-6439027 10 3.66e-04 TTCTGGCCA ACTGGTTG ATTGGTCTCC chr3L:4843550-4843670 42 3.66e-04 TCGCGTGCCC GTTGGTGG TTGGCCAGAC chr3R:11372042-11372162 42 3.66e-04 GAGGAAGCGG GTTGGCCG AGGGGCAAGG chr2R:11533407-11533527 96 3.66e-04 CGTATCTCCC ATTGGACG ATTCGAGGAT chr2L:12689505-12689625 52 3.66e-04 AATAGCTTTT ATTGGACG GGCTAAAAAA chr2R:25244651-25244771 58 4.57e-04 GTGACCTCTT ATTGGGTG TTTGGCCACT chr2L:8799135-8799255 104 4.57e-04 ATTGCCTGCA ATTTGCTG CCCAGATTT chr3R:29767786-29767906 16 4.57e-04 CGGCATTATG ATTGGCCA TCTCCCTCAT chr2R:15839053-15839173 54 4.57e-04 GCACTCACAA AATGGCCG ACGCGAAAGG chr3R:23207417-23207537 5 4.57e-04 ACAA AATGGTGG CCAGCGATAT chr2R:24812111-24812231 12 4.57e-04 ATTTCATTGA ATTGGCCA ACTGCTCGGC chr3L:373017-373137 57 4.57e-04 TGCGATCGTT ATTGGCCA GAAAGAGATG chr3R:13949699-13949819 79 4.57e-04 TTGTTGGTTT AATGGCCG GCGTTCTTTT chrX:4399756-4399876 45 4.57e-04 TACGGATTGG ATTGGCCA TCAAAGCGGG chr4:421921-422041 85 4.57e-04 AATGCATGCC ATTGGTGA ACACTGTTGC chr2R:14814401-14814521 86 4.57e-04 GTTGCTTCTT ATTGGTGA AAGAAATGGG chrX:4600062-4600182 110 4.57e-04 CTGAGCTGTG ATTTGCTG AAT chr2L:10295452-10295572 64 4.57e-04 TGCGTCGACC AATGGTGG GCACTTCAAG chrX:4521019-4521139 46 4.57e-04 AATTGAATGG ATTGGGTG GCCCCGGCCC chrX:2143050-2143170 39 4.57e-04 ATGTGCGCAG ATTGGCCA GCGCCGGGGC chrX:2546406-2546526 40 4.87e-04 GCGGCTTCCC ATTGGCGC CTGACCCAAT chr3L:22132800-22132920 60 4.87e-04 AAACCTTCCG ATTGGCGC GCTCACTCAC chr3L:5891241-5891361 73 4.87e-04 GCCATTTGCC ATTGGCGC TTCACCGAAA chr3R:8702365-8702485 75 5.35e-04 GCCCCTGGCC ATTGGTCA GCGtaaaaca chrX:17758270-17758390 95 5.35e-04 CTTCCCAGCA ATTTGTTG GGGTCACCAC chr2R:12460068-12460188 93 5.79e-04 TGGCCCTGTG ATTGGTGC GGATATTTTT chr3R:6879482-6879602 113 5.79e-04 TAAATCCGGC ATTGGTGC chr2R:25068567-25068687 113 6.25e-04 CGGGGATGTT GTTGGATG chr3R:30909191-30909311 99 6.25e-04 GTCTCCGACG AGTGGCTG TAGATAAGCA chrX:9765728-9765848 74 6.25e-04 ACGACCGCCG ATTGGCTT CACTTAGCTC chr3L:5846341-5846461 45 6.25e-04 GACAGTTGTC ATTGGCTT TTGCTCCGAT chr2L:3685610-3685730 45 7.31e-04 GAGAGAGCGA GATGGCTG CATGGGCATC chr2R:20955564-20955684 72 7.31e-04 TTGGGTGGGT GATGGCTG GGATTTGATG chr3L:12447238-12447358 79 7.31e-04 CCAAGTGGCT ACTGGCCG GCAGTAGcca chr3L:371381-371501 6 7.31e-04 CACAA GATGGCTG CGGGCTATCG chr2R:5745320-5745440 103 7.31e-04 CCATTATGCG ATTGGTCC TTGCGGCGTG chr4:87415-87535 86 7.31e-04 AAACTCTCTC ATTGGTCC TCTCATGGAT chr2R:25051509-25051629 20 7.31e-04 GCCGCACTCC ACTGGCCG CCATTTCCAC chr3R:21534370-21534490 109 8.08e-04 TTGCTGGCAG ATTGGGGG AGTA chrX:12615861-12615981 104 8.08e-04 CGGCAAACAA AATGGCTA ACGGGACAG chrX:20709816-20709936 85 8.08e-04 ctacagatac aTTTGCGG ATAGGGATGC chr2L:503851-503971 71 8.08e-04 TGCCATCGTG ATTGGTTT GGATCATAGT chr2L:10354055-10354175 84 8.08e-04 GAGCAGGCAA AGTGGTTG CACGCTCAGC chr3R:6803904-6804024 70 9.48e-04 TACATGGGTT AATGGTTA CAAATTAGGC chr3R:17666631-17666751 30 9.48e-04 tttcttgctg gttggctc ctgttttgtt chr3R:8685116-8685236 47 9.48e-04 AAAACCAACA AATGGTTA TGAAGTGTGC chrX:4554880-4555000 94 9.48e-04 TGCTGCTGTG ATTTGCCG GAAAACCAGT chr2R:20954909-20955029 79 9.48e-04 CTGTTCGGCG ATTGGGCG GCCGTCGAGA chr2R:13013011-13013131 14 9.48e-04 gtatacacat atTTGTGG CCCCACGGAG chr2R:11703135-11703255 101 9.48e-04 CCCTCTTCTG ATTTGTGG CGCCTGATTA chrX:9727438-9727558 49 1.07e-03 AGAGACAGGT AGTGGCGG TGAGACAGAG chr2L:11345193-11345313 10 1.07e-03 TCTGCAGTA GCTGGCTG AGTGCCTCCA chr3L:1929089-1929209 96 1.07e-03 TCTGTTTTTG ATTTGTCG AAAAATGGGG chr2R:9976332-9976452 19 1.07e-03 TTCTGTCTTA AGTGGCGG ATGGAAACCA chr3L:19670949-19671069 27 1.07e-03 GTTTATTGTT GCTGGCTG GCGGCTGCTC chr2R:23644428-23644548 20 1.07e-03 AGCGATAGCG GCTGGCTG CGACTGCGAG chr2L:6532150-6532270 17 1.16e-03 GCGTGCGCCA AATGGAGG GAGGAAACCC chrX:7161860-7161980 90 1.26e-03 GACATATGTA AATGGCGA GCGAGGGTGG chrX:3808585-3808705 6 1.26e-03 TAGAA AGTGGTGG AAAGAAAAAC chr2L:3612199-3612319 7 1.26e-03 TGGTTC GCTGGTTG GGCGGGCACC chr2L:18364531-18364651 109 1.41e-03 gatgttgatg atttgatg agga chr2R:11489713-11489833 78 1.41e-03 gtgtgtgttt gtTGGCCA TGTTTTCCTC chr3L:12328840-12328960 22 1.41e-03 CGTGCGGCAA AATGGACG CCGGGGAAAT chr2R:16235183-16235303 75 1.41e-03 ACTTCATATA ACTGGTTA GCCAGATTAC chr3R:6831851-6831971 40 1.41e-03 CAACCTGTTG ATTGGACA CTCAGGACTT chr3R:6874550-6874670 22 1.41e-03 AAATTGCCCG ATTGGACA TTGAAACATT chr3R:16427625-16427745 56 1.58e-03 CAACTCTACG ATTGGTCT TCTCTTTTGG chr3R:8134639-8134759 78 1.58e-03 ATGCCGCGGC ACTGGCTC CGCCTTTTGG chr2L:585462-585582 78 1.58e-03 ATCCGAGTGC AATGGTGA ATTTGCAACC chr3R:11343552-11343672 85 1.58e-03 TGTTTCCTAA AGTGGTCG GGGTAGTGGG chr3R:16678143-16678263 80 1.58e-03 GAGTGAAATA AATGGCCA GACGTAGCCA chr3R:11256955-11257075 52 1.58e-03 TTATTATTTA AATTGCTG TTAACCCTTG chr3R:24787839-24787959 67 1.58e-03 CAGCCAAGCC ATTGGTCT TTCCCCTTTA chr3R:18266798-18266918 73 1.58e-03 GGTGTTTACC AATGGGTG TGTGGGCAGG chr2L:8747578-8747698 12 1.58e-03 TTTTGTTCTT ATTGGAGC ACGCGCTGCC chrX:4601529-4601649 99 1.64e-03 gtgtgtgtgt gtttgttg tgtgtgtgGC chrX:16209834-16209954 67 1.64e-03 GCGACCAATA GTTGGTCA TTCATCACGA chrX:2681701-2681821 90 1.64e-03 GGGCGGGGCC AATGGCGC AGCATCCACC chr3L:22821497-22821617 57 1.64e-03 CGAGGCAGCC AATGGCGC CGCAGATAAT chr2L:18783486-18783606 98 1.78e-03 TTTGTTTGCG GTTGGCCC AGACCAGACA chr3R:7961451-7961571 68 1.92e-03 TTGGACTCGT ATTGGATT TCAGAAACAA chrX:7768271-7768391 14 2.04e-03 GCCGTCGCCA GATGGATG CCCTGATGCC chr3R:32071815-32071935 44 2.04e-03 TTAAAACAAA AATGGCTT TTTAAAACAA chrX:17765082-17765202 78 2.24e-03 AATCCGAGTT GTTTGCGG CCACTTGGCT chr3R:6725281-6725401 113 2.36e-03 CTCGAAGCAA AGTGGTTA chr3R:15616855-15616975 9 2.66e-03 CCACGCCC ATTTGGTG TTGCCACCAA chr3R:16010058-16010178 55 2.66e-03 GCTGGCAGGG ATTGGGCA ACCAGCCATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGYTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:25119562-25119682 1.5e-05 66_[+1]_46 chrX:7368474-7368594 1.5e-05 33_[+1]_79 chrX:16912097-16912217 1.5e-05 68_[+1]_44 chr3R:23296249-23296369 1.5e-05 94_[+1]_18 chr3L:20563893-20564013 1.5e-05 63_[+1]_49 chr3R:8145871-8145991 1.5e-05 104_[+1]_8 chr3L:5595000-5595120 1.5e-05 45_[+1]_67 chr3L:21818826-21818946 1.5e-05 40_[+1]_72 chrX:3809229-3809349 1.5e-05 8_[+1]_104 chr2L:18793398-18793518 1.5e-05 109_[+1]_3 chr3R:4843110-4843230 3.1e-05 111_[+1]_1 chrX:8637113-8637233 3.1e-05 108_[+1]_4 chr2L:368805-368925 3.1e-05 73_[+1]_39 chr3R:8368675-8368795 3.1e-05 90_[+1]_22 chr4:1097792-1097912 3.1e-05 59_[+1]_53 chr2R:23049596-23049716 3.1e-05 89_[+1]_23 chr3R:22053896-22054016 3.1e-05 93_[+1]_19 chrX:15379177-15379297 3.1e-05 38_[+1]_74 chr2R:14477662-14477782 3.1e-05 62_[+1]_50 chr2R:23094371-23094491 3.1e-05 73_[+1]_39 chr2L:8820671-8820791 3.1e-05 61_[+1]_51 chr3R:13929060-13929180 3.1e-05 85_[+1]_27 chr2R:9005723-9005843 4.6e-05 64_[+1]_48 chr3R:23718430-23718550 4.6e-05 71_[+1]_41 chr2R:9985237-9985357 4.6e-05 62_[+1]_50 chr3L:6990382-6990502 4.6e-05 53_[+1]_59 chr3R:8686602-8686722 7.6e-05 70_[+1]_42 chrX:4476833-4476953 7.6e-05 84_[+1]_28 chr3R:21077662-21077782 7.6e-05 27_[+1]_85 chr3R:29706041-29706161 7.6e-05 94_[+1]_18 chr3L:8646944-8647064 7.6e-05 32_[+1]_80 chr2R:8270793-8270913 7.6e-05 101_[+1]_11 chr2L:8817488-8817608 7.6e-05 25_[+1]_87 chr3L:6111137-6111257 7.6e-05 27_[+1]_85 chr2L:319863-319983 9.2e-05 81_[+1]_31 chr2L:7303400-7303520 9.2e-05 55_[+1]_57 chr3R:30030279-30030399 9.2e-05 63_[+1]_49 chr3R:6865027-6865147 9.2e-05 81_[+1]_31 chr2L:18774200-18774320 9.2e-05 55_[+1]_57 chr4:423470-423590 9.2e-05 51_[+1]_61 chr3L:4159437-4159557 0.00012 106_[+1]_6 chrX:4589135-4589255 0.00012 70_[+1]_42 chr3R:17602028-17602148 0.00012 78_[+1]_34 chr3R:23131931-23132051 0.00012 55_[+1]_57 chrX:20629499-20629619 0.00012 39_[+1]_73 chr2R:25122148-25122268 0.00012 48_[+1]_64 chr2L:19772578-19772698 0.00012 11_[+1]_101 chrX:19535516-19535636 0.00012 45_[+1]_67 chrX:17405031-17405151 0.00012 99_[+1]_13 chr3R:21456933-21457053 0.00012 39_[+1]_73 chr2L:7359309-7359429 0.00012 85_[+1]_27 chr3L:21610708-21610828 0.00015 72_[+1]_40 chr2R:18013888-18014008 0.00015 58_[+1]_54 chr4:996094-996214 0.00015 51_[+1]_61 chrX:17339817-17339937 0.00017 51_[+1]_61 chr3R:17599810-17599930 0.00017 50_[+1]_62 chr3R:16410847-16410967 0.00017 94_[+1]_18 chr3L:10528385-10528505 0.00017 100_[+1]_12 chr4:384675-384795 0.00017 43_[+1]_69 chr3R:30617605-30617725 0.0002 71_[+1]_41 chr2R:23626356-23626476 0.0002 111_[+1]_1 chrX:7512888-7513008 0.0002 78_[+1]_34 chr3R:23199088-23199208 0.0002 46_[+1]_66 chrX:5602444-5602564 0.00022 108_[+1]_4 chr3R:16632837-16632957 0.00022 60_[+1]_52 chr2L:3617723-3617843 0.00028 22_[+1]_90 chr2R:22867760-22867880 0.00028 73_[+1]_39 chr2R:11472108-11472228 0.00028 46_[+1]_66 chrX:7568499-7568619 0.00028 103_[+1]_9 chr2L:2400021-2400141 0.00028 7_[+1]_105 chr2R:11553225-11553345 0.00028 36_[+1]_76 chr2L:2488378-2488498 0.00028 47_[+1]_65 chr3R:21474477-21474597 0.00028 81_[+1]_31 chr3R:21564684-21564804 0.00028 103_[+1]_9 chr2R:23048317-23048437 0.00028 63_[+1]_49 chr3R:20846907-20847027 0.00031 105_[+1]_7 chr3R:16385766-16385886 0.00031 70_[+1]_42 chrX:4647467-4647587 0.00031 70_[+1]_42 chr3R:16013753-16013873 0.00031 90_[+1]_22 chrX:5540718-5540838 0.00037 31_[+1]_81 chr3L:12589044-12589164 0.00037 51_[+1]_61 chr3L:6438907-6439027 0.00037 9_[+1]_103 chr3L:4843550-4843670 0.00037 41_[+1]_71 chr3R:11372042-11372162 0.00037 41_[+1]_71 chr2R:11533407-11533527 0.00037 95_[+1]_17 chr2L:12689505-12689625 0.00037 51_[+1]_61 chr2R:25244651-25244771 0.00046 57_[+1]_55 chr2L:8799135-8799255 0.00046 103_[+1]_9 chr3R:29767786-29767906 0.00046 15_[+1]_97 chr2R:15839053-15839173 0.00046 53_[+1]_59 chr3R:23207417-23207537 0.00046 4_[+1]_108 chr2R:24812111-24812231 0.00046 11_[+1]_101 chr3L:373017-373137 0.00046 56_[+1]_56 chr3R:13949699-13949819 0.00046 78_[+1]_34 chrX:4399756-4399876 0.00046 44_[+1]_68 chr4:421921-422041 0.00046 84_[+1]_28 chr2R:14814401-14814521 0.00046 85_[+1]_27 chrX:4600062-4600182 0.00046 109_[+1]_3 chr2L:10295452-10295572 0.00046 63_[+1]_49 chrX:4521019-4521139 0.00046 45_[+1]_67 chrX:2143050-2143170 0.00046 38_[+1]_74 chrX:2546406-2546526 0.00049 39_[+1]_73 chr3L:22132800-22132920 0.00049 59_[+1]_53 chr3L:5891241-5891361 0.00049 72_[+1]_40 chr3R:8702365-8702485 0.00053 74_[+1]_38 chrX:17758270-17758390 0.00053 94_[+1]_18 chr2R:12460068-12460188 0.00058 92_[+1]_20 chr3R:6879482-6879602 0.00058 112_[+1] chr2R:25068567-25068687 0.00063 112_[+1] chr3R:30909191-30909311 0.00063 98_[+1]_14 chrX:9765728-9765848 0.00063 73_[+1]_39 chr3L:5846341-5846461 0.00063 44_[+1]_68 chr2L:3685610-3685730 0.00073 44_[+1]_68 chr2R:20955564-20955684 0.00073 71_[+1]_41 chr3L:12447238-12447358 0.00073 78_[+1]_34 chr3L:371381-371501 0.00073 5_[+1]_107 chr2R:5745320-5745440 0.00073 102_[+1]_10 chr4:87415-87535 0.00073 85_[+1]_27 chr2R:25051509-25051629 0.00073 19_[+1]_93 chr3R:21534370-21534490 0.00081 108_[+1]_4 chrX:12615861-12615981 0.00081 103_[+1]_9 chrX:20709816-20709936 0.00081 84_[+1]_28 chr2L:503851-503971 0.00081 70_[+1]_42 chr2L:10354055-10354175 0.00081 83_[+1]_29 chr3R:6803904-6804024 0.00095 69_[+1]_43 chr3R:17666631-17666751 0.00095 29_[+1]_83 chr3R:8685116-8685236 0.00095 46_[+1]_66 chrX:4554880-4555000 0.00095 93_[+1]_19 chr2R:20954909-20955029 0.00095 78_[+1]_34 chr2R:13013011-13013131 0.00095 13_[+1]_99 chr2R:11703135-11703255 0.00095 100_[+1]_12 chrX:9727438-9727558 0.0011 48_[+1]_64 chr2L:11345193-11345313 0.0011 9_[+1]_103 chr3L:1929089-1929209 0.0011 95_[+1]_17 chr2R:9976332-9976452 0.0011 18_[+1]_94 chr3L:19670949-19671069 0.0011 26_[+1]_86 chr2R:23644428-23644548 0.0011 19_[+1]_93 chr2L:6532150-6532270 0.0012 16_[+1]_96 chrX:7161860-7161980 0.0013 89_[+1]_23 chrX:3808585-3808705 0.0013 5_[+1]_107 chr2L:3612199-3612319 0.0013 6_[+1]_106 chr2L:18364531-18364651 0.0014 108_[+1]_4 chr2R:11489713-11489833 0.0014 77_[+1]_35 chr3L:12328840-12328960 0.0014 21_[+1]_91 chr2R:16235183-16235303 0.0014 74_[+1]_38 chr3R:6831851-6831971 0.0014 39_[+1]_73 chr3R:6874550-6874670 0.0014 21_[+1]_91 chr3R:16427625-16427745 0.0016 55_[+1]_57 chr3R:8134639-8134759 0.0016 77_[+1]_35 chr2L:585462-585582 0.0016 77_[+1]_35 chr3R:11343552-11343672 0.0016 84_[+1]_28 chr3R:16678143-16678263 0.0016 79_[+1]_33 chr3R:11256955-11257075 0.0016 51_[+1]_61 chr3R:24787839-24787959 0.0016 66_[+1]_46 chr3R:18266798-18266918 0.0016 72_[+1]_40 chr2L:8747578-8747698 0.0016 11_[+1]_101 chrX:4601529-4601649 0.0016 98_[+1]_14 chrX:16209834-16209954 0.0016 66_[+1]_46 chrX:2681701-2681821 0.0016 89_[+1]_23 chr3L:22821497-22821617 0.0016 56_[+1]_56 chr2L:18783486-18783606 0.0018 97_[+1]_15 chr3R:7961451-7961571 0.0019 67_[+1]_45 chrX:7768271-7768391 0.002 13_[+1]_99 chr3R:32071815-32071935 0.002 43_[+1]_69 chrX:17765082-17765202 0.0022 77_[+1]_35 chr3R:6725281-6725401 0.0024 112_[+1] chr3R:15616855-15616975 0.0027 8_[+1]_104 chr3R:16010058-16010178 0.0027 54_[+1]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGYTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTGGYTG width=8 seqs=168 chr2R:25119562-25119682 ( 67) ATTGGCTG 1 chrX:7368474-7368594 ( 34) ATTGGCTG 1 chrX:16912097-16912217 ( 69) ATTGGCTG 1 chr3R:23296249-23296369 ( 95) ATTGGCTG 1 chr3L:20563893-20564013 ( 64) ATTGGCTG 1 chr3R:8145871-8145991 ( 105) ATTGGCTG 1 chr3L:5595000-5595120 ( 46) ATTGGCTG 1 chr3L:21818826-21818946 ( 41) ATTGGCTG 1 chrX:3809229-3809349 ( 9) ATTGGCTG 1 chr2L:18793398-18793518 ( 110) ATTGGCTG 1 chr3R:4843110-4843230 ( 112) ATTGGTTG 1 chrX:8637113-8637233 ( 109) ATTGGTTG 1 chr2L:368805-368925 ( 74) ATTGGTTG 1 chr3R:8368675-8368795 ( 91) ATTGGTTG 1 chr4:1097792-1097912 ( 60) ATTGGTTG 1 chr2R:23049596-23049716 ( 90) ATTGGTTG 1 chr3R:22053896-22054016 ( 94) ATTGGTTG 1 chrX:15379177-15379297 ( 39) ATTGGTTG 1 chr2R:14477662-14477782 ( 63) ATTGGTTG 1 chr2R:23094371-23094491 ( 74) ATTGGTTG 1 chr2L:8820671-8820791 ( 62) ATTGGTTG 1 chr3R:13929060-13929180 ( 86) ATTGGTTG 1 chr2R:9005723-9005843 ( 65) ATTGGCGG 1 chr3R:23718430-23718550 ( 72) ATTGGCGG 1 chr2R:9985237-9985357 ( 63) ATTGGCGG 1 chr3L:6990382-6990502 ( 54) ATTGGCGG 1 chr3R:8686602-8686722 ( 71) ATTGGTGG 1 chrX:4476833-4476953 ( 85) ATTGGTGG 1 chr3R:21077662-21077782 ( 28) ATTGGTGG 1 chr3R:29706041-29706161 ( 95) ATTGGTGG 1 chr3L:8646944-8647064 ( 33) ATTGGTGG 1 chr2R:8270793-8270913 ( 102) ATTGGTGG 1 chr2L:8817488-8817608 ( 26) ATTGGCCG 1 chr3L:6111137-6111257 ( 28) ATTGGTGG 1 chr2L:319863-319983 ( 82) ATTGGTCG 1 chr2L:7303400-7303520 ( 56) ATTGGTCG 1 chr3R:30030279-30030399 ( 64) ATTGGTCG 1 chr3R:6865027-6865147 ( 82) ATTGGTCG 1 chr2L:18774200-18774320 ( 56) ATTGGTCG 1 chr4:423470-423590 ( 52) ATTGGTCG 1 chr3L:4159437-4159557 ( 107) ATTGGATG 1 chrX:4589135-4589255 ( 71) ATTGGATG 1 chr3R:17602028-17602148 ( 79) GTTGGCTG 1 chr3R:23131931-23132051 ( 56) GTTGGCTG 1 chrX:20629499-20629619 ( 40) GTTGGCTG 1 chr2R:25122148-25122268 ( 49) GTTGGCTG 1 chr2L:19772578-19772698 ( 12) GTTGGCTG 1 chrX:19535516-19535636 ( 46) GTTGGCTG 1 chrX:17405031-17405151 ( 100) ATTGGATG 1 chr3R:21456933-21457053 ( 40) ATTGGATG 1 chr2L:7359309-7359429 ( 86) GTTGGCTG 1 chr3L:21610708-21610828 ( 73) ATTGGCTA 1 chr2R:18013888-18014008 ( 59) ATTGGCTA 1 chr4:996094-996214 ( 52) ATTGGCTA 1 chrX:17339817-17339937 ( 52) GTTGGTTG 1 chr3R:17599810-17599930 ( 51) GTTGGTTG 1 chr3R:16410847-16410967 ( 95) GTTGGTTG 1 chr3L:10528385-10528505 ( 101) GTTGGTTG 1 chr4:384675-384795 ( 44) GTTGGTTG 1 chr3R:30617605-30617725 ( 72) AATGGTTG 1 chr2R:23626356-23626476 ( 112) AATGGTTG 1 chrX:7512888-7513008 ( 79) ATTGGTTA 1 chr3R:23199088-23199208 ( 47) ATTGGTTA 1 chrX:5602444-5602564 ( 109) ATTGGCTC 1 chr3R:16632837-16632957 ( 61) ATTGGCTC 1 chr2L:3617723-3617843 ( 23) ACTGGCTG 1 chr2R:22867760-22867880 ( 74) ATTGGTTC 1 chr2R:11472108-11472228 ( 47) GTTGGCGG 1 chrX:7568499-7568619 ( 104) ATTGGTTC 1 chr2L:2400021-2400141 ( 8) ATTGGTTC 1 chr2R:11553225-11553345 ( 37) ATTGGAGG 1 chr2L:2488378-2488498 ( 48) ACTGGCTG 1 chr3R:21474477-21474597 ( 82) ACTGGCTG 1 chr3R:21564684-21564804 ( 104) ACTGGCTG 1 chr2R:23048317-23048437 ( 64) ATTGGAGG 1 chr3R:20846907-20847027 ( 106) AATGGCGG 1 chr3R:16385766-16385886 ( 71) AATGGCGG 1 chrX:4647467-4647587 ( 71) AATGGCGG 1 chr3R:16013753-16013873 ( 91) AATGGCGG 1 chrX:5540718-5540838 ( 32) ACTGGTTG 1 chr3L:12589044-12589164 ( 52) ATTGGACG 1 chr3L:6438907-6439027 ( 10) ACTGGTTG 1 chr3L:4843550-4843670 ( 42) GTTGGTGG 1 chr3R:11372042-11372162 ( 42) GTTGGCCG 1 chr2R:11533407-11533527 ( 96) ATTGGACG 1 chr2L:12689505-12689625 ( 52) ATTGGACG 1 chr2R:25244651-25244771 ( 58) ATTGGGTG 1 chr2L:8799135-8799255 ( 104) ATTTGCTG 1 chr3R:29767786-29767906 ( 16) ATTGGCCA 1 chr2R:15839053-15839173 ( 54) AATGGCCG 1 chr3R:23207417-23207537 ( 5) AATGGTGG 1 chr2R:24812111-24812231 ( 12) ATTGGCCA 1 chr3L:373017-373137 ( 57) ATTGGCCA 1 chr3R:13949699-13949819 ( 79) AATGGCCG 1 chrX:4399756-4399876 ( 45) ATTGGCCA 1 chr4:421921-422041 ( 85) ATTGGTGA 1 chr2R:14814401-14814521 ( 86) ATTGGTGA 1 chrX:4600062-4600182 ( 110) ATTTGCTG 1 chr2L:10295452-10295572 ( 64) AATGGTGG 1 chrX:4521019-4521139 ( 46) ATTGGGTG 1 chrX:2143050-2143170 ( 39) ATTGGCCA 1 chrX:2546406-2546526 ( 40) ATTGGCGC 1 chr3L:22132800-22132920 ( 60) ATTGGCGC 1 chr3L:5891241-5891361 ( 73) ATTGGCGC 1 chr3R:8702365-8702485 ( 75) ATTGGTCA 1 chrX:17758270-17758390 ( 95) ATTTGTTG 1 chr2R:12460068-12460188 ( 93) ATTGGTGC 1 chr3R:6879482-6879602 ( 113) ATTGGTGC 1 chr2R:25068567-25068687 ( 113) GTTGGATG 1 chr3R:30909191-30909311 ( 99) AGTGGCTG 1 chrX:9765728-9765848 ( 74) ATTGGCTT 1 chr3L:5846341-5846461 ( 45) ATTGGCTT 1 chr2L:3685610-3685730 ( 45) GATGGCTG 1 chr2R:20955564-20955684 ( 72) GATGGCTG 1 chr3L:12447238-12447358 ( 79) ACTGGCCG 1 chr3L:371381-371501 ( 6) GATGGCTG 1 chr2R:5745320-5745440 ( 103) ATTGGTCC 1 chr4:87415-87535 ( 86) ATTGGTCC 1 chr2R:25051509-25051629 ( 20) ACTGGCCG 1 chr3R:21534370-21534490 ( 109) ATTGGGGG 1 chrX:12615861-12615981 ( 104) AATGGCTA 1 chrX:20709816-20709936 ( 85) ATTTGCGG 1 chr2L:503851-503971 ( 71) ATTGGTTT 1 chr2L:10354055-10354175 ( 84) AGTGGTTG 1 chr3R:6803904-6804024 ( 70) AATGGTTA 1 chr3R:17666631-17666751 ( 30) GTTGGCTC 1 chr3R:8685116-8685236 ( 47) AATGGTTA 1 chrX:4554880-4555000 ( 94) ATTTGCCG 1 chr2R:20954909-20955029 ( 79) ATTGGGCG 1 chr2R:13013011-13013131 ( 14) ATTTGTGG 1 chr2R:11703135-11703255 ( 101) ATTTGTGG 1 chrX:9727438-9727558 ( 49) AGTGGCGG 1 chr2L:11345193-11345313 ( 10) GCTGGCTG 1 chr3L:1929089-1929209 ( 96) ATTTGTCG 1 chr2R:9976332-9976452 ( 19) AGTGGCGG 1 chr3L:19670949-19671069 ( 27) GCTGGCTG 1 chr2R:23644428-23644548 ( 20) GCTGGCTG 1 chr2L:6532150-6532270 ( 17) AATGGAGG 1 chrX:7161860-7161980 ( 90) AATGGCGA 1 chrX:3808585-3808705 ( 6) AGTGGTGG 1 chr2L:3612199-3612319 ( 7) GCTGGTTG 1 chr2L:18364531-18364651 ( 109) ATTTGATG 1 chr2R:11489713-11489833 ( 78) GTTGGCCA 1 chr3L:12328840-12328960 ( 22) AATGGACG 1 chr2R:16235183-16235303 ( 75) ACTGGTTA 1 chr3R:6831851-6831971 ( 40) ATTGGACA 1 chr3R:6874550-6874670 ( 22) ATTGGACA 1 chr3R:16427625-16427745 ( 56) ATTGGTCT 1 chr3R:8134639-8134759 ( 78) ACTGGCTC 1 chr2L:585462-585582 ( 78) AATGGTGA 1 chr3R:11343552-11343672 ( 85) AGTGGTCG 1 chr3R:16678143-16678263 ( 80) AATGGCCA 1 chr3R:11256955-11257075 ( 52) AATTGCTG 1 chr3R:24787839-24787959 ( 67) ATTGGTCT 1 chr3R:18266798-18266918 ( 73) AATGGGTG 1 chr2L:8747578-8747698 ( 12) ATTGGAGC 1 chrX:4601529-4601649 ( 99) GTTTGTTG 1 chrX:16209834-16209954 ( 67) GTTGGTCA 1 chrX:2681701-2681821 ( 90) AATGGCGC 1 chr3L:22821497-22821617 ( 57) AATGGCGC 1 chr2L:18783486-18783606 ( 98) GTTGGCCC 1 chr3R:7961451-7961571 ( 68) ATTGGATT 1 chrX:7768271-7768391 ( 14) GATGGATG 1 chr3R:32071815-32071935 ( 44) AATGGCTT 1 chrX:17765082-17765202 ( 78) GTTTGCGG 1 chr3R:6725281-6725401 ( 113) AGTGGTTA 1 chr3R:15616855-15616975 ( 9) ATTTGGTG 1 chr3R:16010058-16010178 ( 55) ATTGGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGYTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.37563 E= 2.3e-033 171 -1404 -46 -1404 -64 -157 -256 147 -1404 -1404 -1404 196 -1404 -1404 191 -173 -1404 -1404 203 -1404 -122 87 -256 63 -1404 -17 3 104 -69 -121 151 -262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGYTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 168 E= 2.3e-033 0.821429 0.000000 0.178571 0.000000 0.160714 0.083333 0.041667 0.714286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.922619 0.077381 0.000000 0.000000 1.000000 0.000000 0.107143 0.452381 0.041667 0.398810 0.000000 0.220238 0.250000 0.529762 0.154762 0.107143 0.696429 0.041667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGYTG MEME-1 regular expression -------------------------------------------------------------------------------- ATTGG[CT][TGC]G -------------------------------------------------------------------------------- Time 7.37 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAATSRV MEME-2 width = 8 sites = 107 llr = 801 E-value = 2.4e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAATSRV MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::aa:144 pos.-specific C aa::2612 probability G :::::344 matrix T ::::8::: bits 2.0 **** 1.8 **** 1.6 **** 1.4 **** Relative 1.2 ***** Entropy 1.0 ***** (10.8 bits) 0.8 ***** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCAATCAG consensus GGA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATSRV MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:8134639-8134759 96 2.94e-05 CGCCTTTTGG CCAATCAG CGGGCGCGTT chr3R:21471319-21471439 86 2.94e-05 GAAATACAAA CCAATCAG AACGAACGGG chrX:7368474-7368594 9 2.94e-05 AAATGCGT CCAATCAG CTGCCTGCAG chr3R:26081285-26081405 35 2.94e-05 AGGGAGGCGG CCAATCAG AGCAGCTAAG chr3L:1738900-1739020 67 2.94e-05 GGGCGTTGGA CCAATCGG AATGCAGCTT chr3R:16418223-16418343 34 2.94e-05 GCTGCGGGGA CCAATCAG CGGTGAAAAG chr2L:19769834-19769954 34 2.94e-05 CAGCAAGCCA CCAATCGG CGAAGAGCTC chr2L:3617723-3617843 66 2.94e-05 TCGCCCAGAG CCAATCGG CATCGCAATG chr2R:20956194-20956314 29 2.94e-05 ACAATGGCAT CCAATCGG AAGTGTTCTG chr3R:21387734-21387854 57 2.94e-05 CTCCGGGCAT CCAATCAG CGCTCTTTGG chr2R:15835978-15836098 51 2.94e-05 CGCGTTCCGG CCAATCGG CGGAGGCAAC chr3R:24787839-24787959 96 2.94e-05 AGTGAATTAA CCAATCGG CGGGCAGCGG chrX:16236590-16236710 64 2.94e-05 ATCCCGAAAA CCAATCGG AAGTCAGAGA chrX:2435059-2435179 52 2.94e-05 GCAGGCTCGG CCAATCAG AGGCAGAAAC chr2R:22286103-22286223 52 2.94e-05 AATCTAGCCA CCAATCAG CTTCGATGCG chrX:17405031-17405151 49 2.94e-05 GCTTAAGCAG CCAATCAG GACAGCAGGG chr3L:5595000-5595120 73 2.94e-05 TGGGTCGCGG CCAATCGG ATTCGTTCGG chr2L:12689505-12689625 81 2.94e-05 AAAATCAAAG CCAATCAG TGGCGTGATC chr2R:11703135-11703255 35 2.94e-05 TGGCGCCCAG CCAATCAG AACGCTGGTG chr3R:14335673-14335793 96 5.93e-05 TTGCTCGTCG CCAATCGA GGCAGATGCC chr2R:19263596-19263716 24 5.93e-05 CGCCAAAAAC CCAATCGA AGAGTCATTT chr3R:30909191-30909311 60 5.93e-05 AAGAAATAAA CCAATCGA AAGGGAGTGA chr3R:6986607-6986727 89 5.93e-05 CGGGCCGCGG CCAATCGA AAATAGGAAA chrX:7230809-7230929 87 5.93e-05 GGCATGCCGG CCAATCAA TAAATAAGAC chr2R:11470348-11470468 79 5.93e-05 CGGGCCAAGC CCAATCGA TTTCCATGGC chr3R:8211240-8211360 45 5.93e-05 AAGATGGCGT CCAATCGA TAAGGCCCTA chr3R:30030279-30030399 82 5.93e-05 ATAACGTCAA CCAATCAA AAGCGCCCTC chr3R:21474477-21474597 37 5.93e-05 AGCTGGCCGG CCAATCAA AGCGGCCAGT chr3R:28576696-28576816 20 5.93e-05 GTTCGAACTG CCAATCGA TAAGCCGCCT chr4:996094-996214 73 5.93e-05 TATTTGTTAG CCAATCGA GAAGCAGAAA chr3L:5891241-5891361 14 5.93e-05 CTTCTGCCCC CCAATCAA TTTCTTGTCC chr2L:3612199-3612319 74 5.93e-05 CCGCCGACCG CCAATCAA AATGCGCGCC chr2L:1967449-1967569 101 8.89e-05 GGCCGATTTC CCAATCGC AATTCCAACA chr3L:12328840-12328960 46 8.89e-05 AAATGGCCAG CCAATCGC AGCGAGGCTG chr2L:10032477-10032597 14 8.89e-05 ATTTCGATGA CCAATCGC GTTCGATTGT chr2L:10295452-10295572 32 8.89e-05 TCCAAATCCA CCAATCGC AATCGCCGAC chr2R:8270793-8270913 41 8.89e-05 TGGCTTTCCA CCAATCGC ATTCCCTCTT chr3R:14709625-14709745 30 1.18e-04 ACAAATCTGG CCAATGGG ATAGACGGAT chr2L:3685610-3685730 2 1.18e-04 A CCAATGGG GATTAGACAG chr2L:6532150-6532270 83 1.18e-04 TATGGGCTGA CCAATGGG AGATTTACGA chr2L:9082888-9083008 56 1.18e-04 TGCGGCTCAG CCAATGAG AGTCAAGATA chr2L:19772578-19772698 78 1.18e-04 ACAATTGTTG CCAATGAG AGCGATTGTG chrX:4521019-4521139 62 1.18e-04 TGGCCCCGGC CCAATGGG TGGGTTGGCC chr2L:18793398-18793518 60 1.18e-04 AATTACCCAT CCAATGGG CTTCTAGCTG chr3R:6874550-6874670 61 1.18e-04 GTCGTCGATG CCAATGGG CGTAGTCCTG chr2L:18364531-18364651 38 1.48e-04 TGAATTGCAG CCAATGGA AACTGTAGGT chrX:1162063-1162183 68 1.48e-04 TCGGCGGCAG CCAATGAA ATCTAAGCTG chr3R:21528660-21528780 4 1.48e-04 GAA CCAATGGA AACCATGGTT chr3L:12600405-12600525 38 1.48e-04 CCAATCCGTG CCAATGGA CAGACAGACA chr3L:22821497-22821617 77 1.48e-04 CAGATAATTG CCAATGGA GAAGCTTGCA chrX:4618978-4619098 60 1.48e-04 AAACCGAAAG CCAATGGA CAACAAACAA chr3R:16013753-16013873 59 1.48e-04 GTCCTTTCGA CCAATGGA AGAACAGTCC chr3R:21459055-21459175 70 1.62e-04 TGATGGGCGA CCAATCCG AAAATTAATT chr2L:585462-585582 65 1.62e-04 CTCTATTTGC CCAATCCG AGTGCAATGG chr4:1097792-1097912 94 1.62e-04 CTTGCTCATT CCAATCCG AAATCTGTAC chr3R:11372042-11372162 25 1.62e-04 GAAAAAGCAG CCAATCCG AGGAAGCGGG chrX:17765082-17765202 66 1.62e-04 CATTCCACAT CCAATCCG AGTTGTTTGC chr3R:6803904-6804024 23 2.07e-04 CTTCAAAGAG CCAATCCA TCGCCTGGCC chrX:12615861-12615981 19 2.07e-04 AGAATGACAG CCAATGGC GCGGCGGCAA chr2R:18013888-18014008 36 2.07e-04 TAGCAATTGA CCAATGGC AGCAGACATG chrX:2546406-2546526 53 2.07e-04 GGCGCCTGAC CCAATGAC ATCCGAAAAT chr3R:6879482-6879602 13 2.07e-04 GCGGCAAGGT CCAATGAC AGCGCTTCTA chr2R:11553225-11553345 90 2.07e-04 TATCAATGGC CCAATGGC AGCAGGGCCA chr3R:29701890-29702010 51 2.07e-04 AACCATCCAG CCAATGGC AAAAGTTCCG chr2R:11533407-11533527 55 2.07e-04 GGTTTTCCTA CCAATGAC CTGAAACTCA chrX:3808585-3808705 46 2.07e-04 TGGCAGTTAA CCAATGAC ATAGCCTGAC chr3L:10528385-10528505 38 2.07e-04 GTCTTGCGGG CCAATGAC AATTAGTCTG chr4:87415-87535 11 2.07e-04 CTTTAATTTA CCAATGGC TTTCTTCAAT chr3R:21388692-21388812 44 2.07e-04 TTCGGATCCA CCAATGGC AGGAGTCGAA chr3L:12589044-12589164 44 2.50e-04 CTCGACAGGG CCAACCAG ATTGGACGGC chr2L:19765532-19765652 43 2.50e-04 CCGATTCAAT CCAATCCC ACCCGCTTCC chrX:16175221-16175341 52 2.50e-04 aaaagaccca ccaaccag ccaaccaCAA chrX:4601529-4601649 38 2.93e-04 GCACCATCGC CCAACCAA CCCACCAACA chr3R:15616855-15616975 23 2.93e-04 GGTGTTGCCA CCAATGCG CGGCAGCCAA chr2R:23626356-23626476 30 2.93e-04 TTTTTTTTAG CCAACCAA CCGTCTCTGC chrX:9765728-9765848 34 2.93e-04 CCTCCGCTGG CCAACCAA CGATTGTTTG chr3R:6831851-6831971 112 2.93e-04 ACGTGACGCC CCAACCAA C chr3R:18118373-18118493 31 2.93e-04 CAAAGACTTG CCAACCAA TAACAAGTGA chr4:418863-418983 35 2.93e-04 CTTGCCCCAC CCAACCAA CTAGTTCTTC chr4:978602-978722 72 3.38e-04 AAAAAATGAG CCAATAAG AATCAACTAT chr4:421921-422041 35 3.38e-04 GACATCTAAG CCAATAGG AACCAACCGT chr3L:5846341-5846461 65 3.38e-04 GCTCCGATTT CCAATAAG TTACTCATAA chrX:2037737-2037857 29 3.68e-04 ATTAGCTAAA CCAATAAA AACCACCCAC chr3R:16678143-16678263 95 3.68e-04 CCAGACGTAG CCAATAAA CGTCGCGCGT chrX:7631531-7631651 71 3.68e-04 GTACCTTCGG CCAATAGA CGAAGCTTTA chr3L:20563893-20564013 13 3.68e-04 GGCGGATTGA CCAATAAA CTCGCAGCTT chrX:7161860-7161980 7 3.96e-04 CAACCG CCAACCGC CACCACCAAC chrX:610176-610296 18 3.96e-04 CGAAATCCGA CCAACCAC ATCCGGAATC chrX:5602444-5602564 9 3.96e-04 cagccaac ccaaccac ccacccaacc chr2L:2400021-2400141 91 4.39e-04 TCGCCGTCAA CCAATGCC GAAGGACGAA chrX:4647467-4647587 20 4.39e-04 TGAAAGCCAG CCAATGCC AAGTTATCCA chr3R:11272810-11272930 62 4.39e-04 GAGCTGAGGA CCAACGAG CAAGGACCAG chr4:428373-428493 90 4.67e-04 GTGGATGGTT CCAACGAA TGTTCGTTCG chr2L:368805-368925 103 4.67e-04 GGGGCGTTGC CCAACGAA ACAGCAAAGA chr3R:21392372-21392492 49 4.97e-04 CACTCGGCAA CCAATAAC ACGCATAATT chr2L:11345193-11345313 102 5.28e-04 TAAACGTCTG CCAATTAG TGATGCTTGT chr2R:13013011-13013131 45 5.28e-04 GGAGTCATGA CCAATTGG CGTGTTTTTC chrX:17772017-17772137 85 5.28e-04 GGCTCATTGA CCAATTAG CATTAACAAA chr3R:13949699-13949819 11 5.73e-04 GCAGCATTGT CCAATTAA ATCAGCCGAA chr2L:15109304-15109424 53 5.73e-04 TGTTTCTCGA CCAATTAA ATTCGAGAGC chr3L:10257975-10258095 76 6.16e-04 TCAGTTTGGG CCAACCCA AGTGAGCCAC chr2L:5362433-5362553 12 6.16e-04 ATCGAATCAA CCAACCCA ACCTGGGCGT chr3R:16406794-16406914 80 6.16e-04 GGAAGGGCGG CCAACCCA AACGACTCCC chr2L:505130-505250 51 7.07e-04 GAGTTCTGCA CCAATCAT CAGTGAGCAA chr3R:4895714-4895834 37 7.07e-04 TTGCGCCCGA CCAATCGT TTTCCGTCTT chr2L:8747578-8747698 35 7.07e-04 CTGCCAAATG CCAATACA AATGGCGCAA chrX:2681701-2681821 61 7.22e-04 TGTCTGGGAA CCAACCCC CTATGGACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATSRV MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:8134639-8134759 2.9e-05 95_[+2]_17 chr3R:21471319-21471439 2.9e-05 85_[+2]_27 chrX:7368474-7368594 2.9e-05 8_[+2]_104 chr3R:26081285-26081405 2.9e-05 34_[+2]_78 chr3L:1738900-1739020 2.9e-05 66_[+2]_46 chr3R:16418223-16418343 2.9e-05 33_[+2]_79 chr2L:19769834-19769954 2.9e-05 33_[+2]_79 chr2L:3617723-3617843 2.9e-05 65_[+2]_47 chr2R:20956194-20956314 2.9e-05 28_[+2]_84 chr3R:21387734-21387854 2.9e-05 56_[+2]_56 chr2R:15835978-15836098 2.9e-05 50_[+2]_62 chr3R:24787839-24787959 2.9e-05 95_[+2]_17 chrX:16236590-16236710 2.9e-05 63_[+2]_49 chrX:2435059-2435179 2.9e-05 51_[+2]_61 chr2R:22286103-22286223 2.9e-05 51_[+2]_61 chrX:17405031-17405151 2.9e-05 48_[+2]_64 chr3L:5595000-5595120 2.9e-05 72_[+2]_40 chr2L:12689505-12689625 2.9e-05 80_[+2]_32 chr2R:11703135-11703255 2.9e-05 34_[+2]_78 chr3R:14335673-14335793 5.9e-05 95_[+2]_17 chr2R:19263596-19263716 5.9e-05 23_[+2]_89 chr3R:30909191-30909311 5.9e-05 59_[+2]_53 chr3R:6986607-6986727 5.9e-05 88_[+2]_24 chrX:7230809-7230929 5.9e-05 86_[+2]_26 chr2R:11470348-11470468 5.9e-05 78_[+2]_34 chr3R:8211240-8211360 5.9e-05 44_[+2]_68 chr3R:30030279-30030399 5.9e-05 81_[+2]_31 chr3R:21474477-21474597 5.9e-05 36_[+2]_76 chr3R:28576696-28576816 5.9e-05 19_[+2]_93 chr4:996094-996214 5.9e-05 72_[+2]_40 chr3L:5891241-5891361 5.9e-05 13_[+2]_99 chr2L:3612199-3612319 5.9e-05 73_[+2]_39 chr2L:1967449-1967569 8.9e-05 100_[+2]_12 chr3L:12328840-12328960 8.9e-05 45_[+2]_67 chr2L:10032477-10032597 8.9e-05 13_[+2]_99 chr2L:10295452-10295572 8.9e-05 31_[+2]_81 chr2R:8270793-8270913 8.9e-05 40_[+2]_72 chr3R:14709625-14709745 0.00012 29_[+2]_83 chr2L:3685610-3685730 0.00012 1_[+2]_111 chr2L:6532150-6532270 0.00012 82_[+2]_30 chr2L:9082888-9083008 0.00012 55_[+2]_57 chr2L:19772578-19772698 0.00012 77_[+2]_35 chrX:4521019-4521139 0.00012 61_[+2]_51 chr2L:18793398-18793518 0.00012 59_[+2]_53 chr3R:6874550-6874670 0.00012 60_[+2]_52 chr2L:18364531-18364651 0.00015 37_[+2]_75 chrX:1162063-1162183 0.00015 67_[+2]_45 chr3R:21528660-21528780 0.00015 3_[+2]_109 chr3L:12600405-12600525 0.00015 37_[+2]_75 chr3L:22821497-22821617 0.00015 76_[+2]_36 chrX:4618978-4619098 0.00015 59_[+2]_53 chr3R:16013753-16013873 0.00015 58_[+2]_54 chr3R:21459055-21459175 0.00016 69_[+2]_43 chr2L:585462-585582 0.00016 64_[+2]_48 chr4:1097792-1097912 0.00016 93_[+2]_19 chr3R:11372042-11372162 0.00016 24_[+2]_88 chrX:17765082-17765202 0.00016 65_[+2]_47 chr3R:6803904-6804024 0.00021 22_[+2]_90 chrX:12615861-12615981 0.00021 18_[+2]_94 chr2R:18013888-18014008 0.00021 35_[+2]_77 chrX:2546406-2546526 0.00021 52_[+2]_60 chr3R:6879482-6879602 0.00021 12_[+2]_100 chr2R:11553225-11553345 0.00021 89_[+2]_23 chr3R:29701890-29702010 0.00021 50_[+2]_62 chr2R:11533407-11533527 0.00021 54_[+2]_58 chrX:3808585-3808705 0.00021 45_[+2]_67 chr3L:10528385-10528505 0.00021 37_[+2]_75 chr4:87415-87535 0.00021 10_[+2]_102 chr3R:21388692-21388812 0.00021 43_[+2]_69 chr3L:12589044-12589164 0.00025 43_[+2]_69 chr2L:19765532-19765652 0.00025 42_[+2]_70 chrX:16175221-16175341 0.00025 51_[+2]_61 chrX:4601529-4601649 0.00029 37_[+2]_75 chr3R:15616855-15616975 0.00029 22_[+2]_90 chr2R:23626356-23626476 0.00029 29_[+2]_83 chrX:9765728-9765848 0.00029 33_[+2]_79 chr3R:6831851-6831971 0.00029 111_[+2]_1 chr3R:18118373-18118493 0.00029 30_[+2]_82 chr4:418863-418983 0.00029 34_[+2]_78 chr4:978602-978722 0.00034 71_[+2]_41 chr4:421921-422041 0.00034 34_[+2]_78 chr3L:5846341-5846461 0.00034 64_[+2]_48 chrX:2037737-2037857 0.00037 28_[+2]_84 chr3R:16678143-16678263 0.00037 94_[+2]_18 chrX:7631531-7631651 0.00037 70_[+2]_42 chr3L:20563893-20564013 0.00037 12_[+2]_100 chrX:7161860-7161980 0.0004 6_[+2]_106 chrX:610176-610296 0.0004 17_[+2]_95 chrX:5602444-5602564 0.0004 8_[+2]_104 chr2L:2400021-2400141 0.00044 90_[+2]_22 chrX:4647467-4647587 0.00044 19_[+2]_93 chr3R:11272810-11272930 0.00044 61_[+2]_51 chr4:428373-428493 0.00047 89_[+2]_23 chr2L:368805-368925 0.00047 102_[+2]_10 chr3R:21392372-21392492 0.0005 48_[+2]_64 chr2L:11345193-11345313 0.00053 101_[+2]_11 chr2R:13013011-13013131 0.00053 44_[+2]_68 chrX:17772017-17772137 0.00053 84_[+2]_28 chr3R:13949699-13949819 0.00057 10_[+2]_102 chr2L:15109304-15109424 0.00057 52_[+2]_60 chr3L:10257975-10258095 0.00062 75_[+2]_37 chr2L:5362433-5362553 0.00062 11_[+2]_101 chr3R:16406794-16406914 0.00062 79_[+2]_33 chr2L:505130-505250 0.00071 50_[+2]_62 chr3R:4895714-4895834 0.00071 36_[+2]_76 chr2L:8747578-8747698 0.00071 34_[+2]_78 chrX:2681701-2681821 0.00072 60_[+2]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATSRV MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAATSRV width=8 seqs=107 chr3R:8134639-8134759 ( 96) CCAATCAG 1 chr3R:21471319-21471439 ( 86) CCAATCAG 1 chrX:7368474-7368594 ( 9) CCAATCAG 1 chr3R:26081285-26081405 ( 35) CCAATCAG 1 chr3L:1738900-1739020 ( 67) CCAATCGG 1 chr3R:16418223-16418343 ( 34) CCAATCAG 1 chr2L:19769834-19769954 ( 34) CCAATCGG 1 chr2L:3617723-3617843 ( 66) CCAATCGG 1 chr2R:20956194-20956314 ( 29) CCAATCGG 1 chr3R:21387734-21387854 ( 57) CCAATCAG 1 chr2R:15835978-15836098 ( 51) CCAATCGG 1 chr3R:24787839-24787959 ( 96) CCAATCGG 1 chrX:16236590-16236710 ( 64) CCAATCGG 1 chrX:2435059-2435179 ( 52) CCAATCAG 1 chr2R:22286103-22286223 ( 52) CCAATCAG 1 chrX:17405031-17405151 ( 49) CCAATCAG 1 chr3L:5595000-5595120 ( 73) CCAATCGG 1 chr2L:12689505-12689625 ( 81) CCAATCAG 1 chr2R:11703135-11703255 ( 35) CCAATCAG 1 chr3R:14335673-14335793 ( 96) CCAATCGA 1 chr2R:19263596-19263716 ( 24) CCAATCGA 1 chr3R:30909191-30909311 ( 60) CCAATCGA 1 chr3R:6986607-6986727 ( 89) CCAATCGA 1 chrX:7230809-7230929 ( 87) CCAATCAA 1 chr2R:11470348-11470468 ( 79) CCAATCGA 1 chr3R:8211240-8211360 ( 45) CCAATCGA 1 chr3R:30030279-30030399 ( 82) CCAATCAA 1 chr3R:21474477-21474597 ( 37) CCAATCAA 1 chr3R:28576696-28576816 ( 20) CCAATCGA 1 chr4:996094-996214 ( 73) CCAATCGA 1 chr3L:5891241-5891361 ( 14) CCAATCAA 1 chr2L:3612199-3612319 ( 74) CCAATCAA 1 chr2L:1967449-1967569 ( 101) CCAATCGC 1 chr3L:12328840-12328960 ( 46) CCAATCGC 1 chr2L:10032477-10032597 ( 14) CCAATCGC 1 chr2L:10295452-10295572 ( 32) CCAATCGC 1 chr2R:8270793-8270913 ( 41) CCAATCGC 1 chr3R:14709625-14709745 ( 30) CCAATGGG 1 chr2L:3685610-3685730 ( 2) CCAATGGG 1 chr2L:6532150-6532270 ( 83) CCAATGGG 1 chr2L:9082888-9083008 ( 56) CCAATGAG 1 chr2L:19772578-19772698 ( 78) CCAATGAG 1 chrX:4521019-4521139 ( 62) CCAATGGG 1 chr2L:18793398-18793518 ( 60) CCAATGGG 1 chr3R:6874550-6874670 ( 61) CCAATGGG 1 chr2L:18364531-18364651 ( 38) CCAATGGA 1 chrX:1162063-1162183 ( 68) CCAATGAA 1 chr3R:21528660-21528780 ( 4) CCAATGGA 1 chr3L:12600405-12600525 ( 38) CCAATGGA 1 chr3L:22821497-22821617 ( 77) CCAATGGA 1 chrX:4618978-4619098 ( 60) CCAATGGA 1 chr3R:16013753-16013873 ( 59) CCAATGGA 1 chr3R:21459055-21459175 ( 70) CCAATCCG 1 chr2L:585462-585582 ( 65) CCAATCCG 1 chr4:1097792-1097912 ( 94) CCAATCCG 1 chr3R:11372042-11372162 ( 25) CCAATCCG 1 chrX:17765082-17765202 ( 66) CCAATCCG 1 chr3R:6803904-6804024 ( 23) CCAATCCA 1 chrX:12615861-12615981 ( 19) CCAATGGC 1 chr2R:18013888-18014008 ( 36) CCAATGGC 1 chrX:2546406-2546526 ( 53) CCAATGAC 1 chr3R:6879482-6879602 ( 13) CCAATGAC 1 chr2R:11553225-11553345 ( 90) CCAATGGC 1 chr3R:29701890-29702010 ( 51) CCAATGGC 1 chr2R:11533407-11533527 ( 55) CCAATGAC 1 chrX:3808585-3808705 ( 46) CCAATGAC 1 chr3L:10528385-10528505 ( 38) CCAATGAC 1 chr4:87415-87535 ( 11) CCAATGGC 1 chr3R:21388692-21388812 ( 44) CCAATGGC 1 chr3L:12589044-12589164 ( 44) CCAACCAG 1 chr2L:19765532-19765652 ( 43) CCAATCCC 1 chrX:16175221-16175341 ( 52) CCAACCAG 1 chrX:4601529-4601649 ( 38) CCAACCAA 1 chr3R:15616855-15616975 ( 23) CCAATGCG 1 chr2R:23626356-23626476 ( 30) CCAACCAA 1 chrX:9765728-9765848 ( 34) CCAACCAA 1 chr3R:6831851-6831971 ( 112) CCAACCAA 1 chr3R:18118373-18118493 ( 31) CCAACCAA 1 chr4:418863-418983 ( 35) CCAACCAA 1 chr4:978602-978722 ( 72) CCAATAAG 1 chr4:421921-422041 ( 35) CCAATAGG 1 chr3L:5846341-5846461 ( 65) CCAATAAG 1 chrX:2037737-2037857 ( 29) CCAATAAA 1 chr3R:16678143-16678263 ( 95) CCAATAAA 1 chrX:7631531-7631651 ( 71) CCAATAGA 1 chr3L:20563893-20564013 ( 13) CCAATAAA 1 chrX:7161860-7161980 ( 7) CCAACCGC 1 chrX:610176-610296 ( 18) CCAACCAC 1 chrX:5602444-5602564 ( 9) CCAACCAC 1 chr2L:2400021-2400141 ( 91) CCAATGCC 1 chrX:4647467-4647587 ( 20) CCAATGCC 1 chr3R:11272810-11272930 ( 62) CCAACGAG 1 chr4:428373-428493 ( 90) CCAACGAA 1 chr2L:368805-368925 ( 103) CCAACGAA 1 chr3R:21392372-21392492 ( 49) CCAATAAC 1 chr2L:11345193-11345313 ( 102) CCAATTAG 1 chr2R:13013011-13013131 ( 45) CCAATTGG 1 chrX:17772017-17772137 ( 85) CCAATTAG 1 chr3R:13949699-13949819 ( 11) CCAATTAA 1 chr2L:15109304-15109424 ( 53) CCAATTAA 1 chr3L:10257975-10258095 ( 76) CCAACCCA 1 chr2L:5362433-5362553 ( 12) CCAACCCA 1 chr3R:16406794-16406914 ( 80) CCAACCCA 1 chr2L:505130-505250 ( 51) CCAATCAT 1 chr3R:4895714-4895834 ( 37) CCAATCGT 1 chr2L:8747578-8747698 ( 35) CCAATACA 1 chrX:2681701-2681821 ( 61) CCAACCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATSRV MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.22897 E= 2.4e-034 -1339 201 -1339 -1339 -1339 201 -1339 -1339 200 -1339 -1339 -1339 200 -1339 -1339 -1339 -1339 -56 -1339 169 -157 120 29 -246 84 -82 75 -1339 54 -14 68 -378 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATSRV MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 107 E= 2.4e-034 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.168224 0.000000 0.831776 0.084112 0.570093 0.299065 0.046729 0.448598 0.140187 0.411215 0.000000 0.364486 0.224299 0.392523 0.018692 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATSRV MEME-2 regular expression -------------------------------------------------------------------------------- CCAAT[CG][AG][GAC] -------------------------------------------------------------------------------- Time 13.85 secs. ******************************************************************************** ******************************************************************************** MOTIF MCATTTTS MEME-3 width = 8 sites = 32 llr = 283 E-value = 5.5e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCATTTTS MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3:a::::: pos.-specific C 5a:::::3 probability G 2::::::6 matrix T 1::aaaa1 bits 2.0 ****** 1.8 ****** 1.6 ****** 1.4 ****** Relative 1.2 ****** Entropy 1.0 ****** (12.8 bits) 0.8 ****** 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel CCATTTTG consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCATTTTS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:428373-428493 113 1.63e-05 GTTCGGCCAA CCATTTTG chr3R:23199088-23199208 103 1.63e-05 TCCATCGCAA CCATTTTG GGCCCGTTCT chr2R:22867760-22867880 16 1.63e-05 GGGCTCTCCA CCATTTTG TGAGGACTTG chr2L:505130-505250 83 1.63e-05 CAGACGAACG CCAttttg tttccgcttc chr2R:23048317-23048437 12 1.63e-05 AAACCAGACG CCATTTTG CATTTCCATT chr2L:3589003-3589123 34 1.63e-05 TGCAGTCTAT CCATTTTG GCAGAAGGGT chr2R:23572587-23572707 66 1.63e-05 ATTCTAGCGC CCATTTTG ATTTTTATTA chr2R:23644428-23644548 43 1.63e-05 GCGAGAAAAG CCATTTTG AAAGAGCATC chr3L:5891241-5891361 56 1.63e-05 TGTGGCGACT CCATTTTG CCATTTGCCA chr3R:21459055-21459175 44 3.27e-05 CCACTCTCGG CCATTTTC GATAAGCGTG chr4:426131-426251 47 3.27e-05 TTCCTGCGTC CCATTTTC TATCAGCCCG chr2L:599679-599799 1 3.27e-05 . CCATTTTC CTGCTCATTT chr2R:23049596-23049716 107 3.27e-05 GCCAGAACGC CCATTTTC GAATGT chr3R:11272810-11272930 11 3.27e-05 TAAGGCGACG CCATTTTC CTTTCGCCCC chr3L:6438907-6439027 71 4.92e-05 TGATTGTGTC ACATTTTG TGTTTATTAC chr2L:3685610-3685730 78 4.92e-05 CTTGGGGGTG ACATTTTG TCGCAATTTC chr2L:21806490-21806610 111 4.92e-05 TAGCAAACAG ACATTTTG CT chrX:17765082-17765202 20 4.92e-05 AATCAAAGAG ACATTTTG AGCGGAAAAT chr3R:21534370-21534490 16 6.54e-05 AGGGACGCCC GCATTTTG GTTGGTCCGG chr3R:8368675-8368795 83 6.54e-05 GGTTAAATGC GCATTttg attggttggt chr3R:30928760-30928880 112 6.54e-05 AGGCGGGCGC GCATTTTG G chr3R:16632837-16632957 53 6.54e-05 ATAAGGCTTG GCATTTTG ATTGGCTCGG chr3L:6117066-6117186 96 8.20e-05 CAGACGCCCA ACATTTTC CGGCGCGACA chr3R:8702365-8702485 9 8.20e-05 ATCAGTCC ACATTTTC ACACTTTCGT chr3R:16010058-16010178 13 9.91e-05 TCTTTCCATT CCATTTTT ATTCGATTGA chrX:5602444-5602564 41 9.91e-05 acTTGCCTTG CCATTTTT CTTTTACCAC chr3R:23131931-23132051 76 1.32e-04 CGGGCCAAAA GCATTTTC TTCTCGGTCT chr2L:2488378-2488498 20 1.32e-04 GGCTGGCACT TCATTTTG TGGGATCGTC chr3L:12589044-12589164 98 1.67e-04 AATCCGGCTG TCATTTTC CGAGGGCATA chr3R:16427625-16427745 91 1.67e-04 AGTAGGTTTT TCATTTTC TTTCTCGTTT chr2R:5732330-5732450 42 1.67e-04 AAAATTGTAC ACATTTTT GTGAGCATGG chr3R:21551663-21551783 106 1.67e-04 CAGCCATTTT ACATTTTT GTTTCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCATTTTS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:428373-428493 1.6e-05 112_[+3] chr3R:23199088-23199208 1.6e-05 102_[+3]_10 chr2R:22867760-22867880 1.6e-05 15_[+3]_97 chr2L:505130-505250 1.6e-05 82_[+3]_30 chr2R:23048317-23048437 1.6e-05 11_[+3]_101 chr2L:3589003-3589123 1.6e-05 33_[+3]_79 chr2R:23572587-23572707 1.6e-05 65_[+3]_47 chr2R:23644428-23644548 1.6e-05 42_[+3]_70 chr3L:5891241-5891361 1.6e-05 55_[+3]_57 chr3R:21459055-21459175 3.3e-05 43_[+3]_69 chr4:426131-426251 3.3e-05 46_[+3]_66 chr2L:599679-599799 3.3e-05 [+3]_112 chr2R:23049596-23049716 3.3e-05 106_[+3]_6 chr3R:11272810-11272930 3.3e-05 10_[+3]_102 chr3L:6438907-6439027 4.9e-05 70_[+3]_42 chr2L:3685610-3685730 4.9e-05 77_[+3]_35 chr2L:21806490-21806610 4.9e-05 110_[+3]_2 chrX:17765082-17765202 4.9e-05 19_[+3]_93 chr3R:21534370-21534490 6.5e-05 15_[+3]_97 chr3R:8368675-8368795 6.5e-05 82_[+3]_30 chr3R:30928760-30928880 6.5e-05 111_[+3]_1 chr3R:16632837-16632957 6.5e-05 52_[+3]_60 chr3L:6117066-6117186 8.2e-05 95_[+3]_17 chr3R:8702365-8702485 8.2e-05 8_[+3]_104 chr3R:16010058-16010178 9.9e-05 12_[+3]_100 chrX:5602444-5602564 9.9e-05 40_[+3]_72 chr3R:23131931-23132051 0.00013 75_[+3]_37 chr2L:2488378-2488498 0.00013 19_[+3]_93 chr3L:12589044-12589164 0.00017 97_[+3]_15 chr3R:16427625-16427745 0.00017 90_[+3]_22 chr2R:5732330-5732450 0.00017 41_[+3]_71 chr3R:21551663-21551783 0.00017 105_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCATTTTS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCATTTTS width=8 seqs=32 chr4:428373-428493 ( 113) CCATTTTG 1 chr3R:23199088-23199208 ( 103) CCATTTTG 1 chr2R:22867760-22867880 ( 16) CCATTTTG 1 chr2L:505130-505250 ( 83) CCATTTTG 1 chr2R:23048317-23048437 ( 12) CCATTTTG 1 chr2L:3589003-3589123 ( 34) CCATTTTG 1 chr2R:23572587-23572707 ( 66) CCATTTTG 1 chr2R:23644428-23644548 ( 43) CCATTTTG 1 chr3L:5891241-5891361 ( 56) CCATTTTG 1 chr3R:21459055-21459175 ( 44) CCATTTTC 1 chr4:426131-426251 ( 47) CCATTTTC 1 chr2L:599679-599799 ( 1) CCATTTTC 1 chr2R:23049596-23049716 ( 107) CCATTTTC 1 chr3R:11272810-11272930 ( 11) CCATTTTC 1 chr3L:6438907-6439027 ( 71) ACATTTTG 1 chr2L:3685610-3685730 ( 78) ACATTTTG 1 chr2L:21806490-21806610 ( 111) ACATTTTG 1 chrX:17765082-17765202 ( 20) ACATTTTG 1 chr3R:21534370-21534490 ( 16) GCATTTTG 1 chr3R:8368675-8368795 ( 83) GCATTTTG 1 chr3R:30928760-30928880 ( 112) GCATTTTG 1 chr3R:16632837-16632957 ( 53) GCATTTTG 1 chr3L:6117066-6117186 ( 96) ACATTTTC 1 chr3R:8702365-8702485 ( 9) ACATTTTC 1 chr3R:16010058-16010178 ( 13) CCATTTTT 1 chrX:5602444-5602564 ( 41) CCATTTTT 1 chr3R:23131931-23132051 ( 76) GCATTTTC 1 chr2L:2488378-2488498 ( 20) TCATTTTG 1 chr3L:12589044-12589164 ( 98) TCATTTTC 1 chr3R:16427625-16427745 ( 91) TCATTTTC 1 chr2R:5732330-5732450 ( 42) ACATTTTT 1 chr3R:21551663-21551783 ( 106) ACATTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCATTTTS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.78433 E= 5.5e-001 0 101 -65 -145 -1164 201 -1164 -1164 200 -1164 -1164 -1164 -1164 -1164 -1164 196 -1164 -1164 -1164 196 -1164 -1164 -1164 196 -1164 -1164 -1164 196 -1164 34 120 -104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCATTTTS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 5.5e-001 0.250000 0.500000 0.156250 0.093750 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.312500 0.562500 0.125000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCATTTTS MEME-3 regular expression -------------------------------------------------------------------------------- [CA]CATTTT[GC] -------------------------------------------------------------------------------- Time 19.59 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGSGTKG MEME-4 width = 8 sites = 18 llr = 169 E-value = 2.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGSGTKG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :2:::::: pos.-specific C :::3:::: probability G a8a7a:7a matrix T :::::a3: bits 2.0 * * ** * 1.8 * * ** * 1.6 * * ** * 1.4 * * ** * Relative 1.2 *** ** * Entropy 1.0 ******** (13.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGTGG consensus A C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSGTKG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:1967449-1967569 85 1.36e-05 ATTTTCCACG GGGGGTGG CCGATTTCCC chr2R:9005723-9005843 89 1.36e-05 GTGTTTGGCG GGGGGTGG TGGCGGTTGT chr2R:20955564-20955684 107 1.36e-05 TTCGTGAGAT GGGGGTGG TTAACT chr3R:17599810-17599930 99 1.36e-05 TCGGCAAGTT GGGGGTGG TTCCCGGCTC chr3L:6111137-6111257 47 1.36e-05 CGCCAGTCGA GGGGGTGG CTGTGGATTA chr2L:19765532-19765652 92 2.73e-05 GACATGCGCA GGGCGTGG CAGTCGCCAA chrX:16912097-16912217 16 2.73e-05 CCACGAAAGT GGGCGTGG CATCGGATAA chr3R:30909191-30909311 21 2.73e-05 CGCCATCGGT GGGCGTGG CCAGTGAGCA chr3R:8702365-8702485 57 4.16e-05 TGCGTCGATC GGGGGTTG GCCCCTGGCC chrX:3808585-3808705 70 4.16e-05 TGACCCATTC GGGGGTTG TTTTTCCTTA chr4:996094-996214 99 4.16e-05 AAGGAAGAAT GGGGGTTG GCTCAAAAAG chr4:428373-428493 57 5.55e-05 TCCGCAAAAT GAGGGTGG ATTTGTATTT chrX:7161860-7161980 100 5.55e-05 AATGGCGAGC GAGGGTGG CTCCTTTTGG chrX:4521019-4521139 6 5.55e-05 AAAAA GAGGGTGG TTCCAAGGAC chr3R:6874550-6874670 85 5.55e-05 CCTGCGGGAG GAGGGTGG ATTGTGGGCG chr3L:1738900-1739020 57 6.99e-05 TGACGTCATG GGGCGTTG GACCAATCGG chr2L:368805-368925 94 6.99e-05 TTCGTCGAAG GGGCGTTG CCCAACGAAA chr3L:19670949-19671069 112 6.99e-05 CGTTGCCAAG GGGCGTTG A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSGTKG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1967449-1967569 1.4e-05 84_[+4]_28 chr2R:9005723-9005843 1.4e-05 88_[+4]_24 chr2R:20955564-20955684 1.4e-05 106_[+4]_6 chr3R:17599810-17599930 1.4e-05 98_[+4]_14 chr3L:6111137-6111257 1.4e-05 46_[+4]_66 chr2L:19765532-19765652 2.7e-05 91_[+4]_21 chrX:16912097-16912217 2.7e-05 15_[+4]_97 chr3R:30909191-30909311 2.7e-05 20_[+4]_92 chr3R:8702365-8702485 4.2e-05 56_[+4]_56 chrX:3808585-3808705 4.2e-05 69_[+4]_43 chr4:996094-996214 4.2e-05 98_[+4]_14 chr4:428373-428493 5.6e-05 56_[+4]_56 chrX:7161860-7161980 5.6e-05 99_[+4]_13 chrX:4521019-4521139 5.6e-05 5_[+4]_107 chr3R:6874550-6874670 5.6e-05 84_[+4]_28 chr3L:1738900-1739020 7e-05 56_[+4]_56 chr2L:368805-368925 7e-05 93_[+4]_19 chr3L:19670949-19671069 7e-05 111_[+4]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSGTKG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGSGTKG width=8 seqs=18 chr2L:1967449-1967569 ( 85) GGGGGTGG 1 chr2R:9005723-9005843 ( 89) GGGGGTGG 1 chr2R:20955564-20955684 ( 107) GGGGGTGG 1 chr3R:17599810-17599930 ( 99) GGGGGTGG 1 chr3L:6111137-6111257 ( 47) GGGGGTGG 1 chr2L:19765532-19765652 ( 92) GGGCGTGG 1 chrX:16912097-16912217 ( 16) GGGCGTGG 1 chr3R:30909191-30909311 ( 21) GGGCGTGG 1 chr3R:8702365-8702485 ( 57) GGGGGTTG 1 chrX:3808585-3808705 ( 70) GGGGGTTG 1 chr4:996094-996214 ( 99) GGGGGTTG 1 chr4:428373-428493 ( 57) GAGGGTGG 1 chrX:7161860-7161980 ( 100) GAGGGTGG 1 chrX:4521019-4521139 ( 6) GAGGGTGG 1 chr3R:6874550-6874670 ( 85) GAGGGTGG 1 chr3L:1738900-1739020 ( 57) GGGCGTTG 1 chr2L:368805-368925 ( 94) GGGCGTTG 1 chr3L:19670949-19671069 ( 112) GGGCGTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSGTKG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4072 E= 2.9e+004 -1081 -1081 203 -1081 -17 -1081 166 -1081 -1081 -1081 203 -1081 -1081 43 144 -1081 -1081 -1081 203 -1081 -1081 -1081 -1081 196 -1081 -1081 144 37 -1081 -1081 203 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSGTKG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 2.9e+004 0.000000 0.000000 1.000000 0.000000 0.222222 0.000000 0.777778 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSGTKG MEME-4 regular expression -------------------------------------------------------------------------------- G[GA]G[GC]GT[GT]G -------------------------------------------------------------------------------- Time 25.27 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGGCGG MEME-5 width = 8 sites = 2 llr = 22 E-value = 1.2e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGGCGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:::a:: probability G a:aaa:aa matrix T :::::::: bits 2.0 ******** 1.8 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGGGCGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:9727438-9727558 28 1.32e-05 ACCACCCTCG GCGGGCGG AAAAGAGACA chr3R:17599810-17599930 27 1.32e-05 ATGGCGTTGA GCGGGCGG AAGGAAGGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:9727438-9727558 1.3e-05 27_[+5]_85 chr3R:17599810-17599930 1.3e-05 26_[+5]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGGCGG width=8 seqs=2 chrX:9727438-9727558 ( 28) GCGGGCGG 1 chr3R:17599810-17599930 ( 27) GCGGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.2e+005 -765 -765 202 -765 -765 201 -765 -765 -765 -765 202 -765 -765 -765 202 -765 -765 -765 202 -765 -765 201 -765 -765 -765 -765 202 -765 -765 -765 202 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.2e+005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCGG MEME-5 regular expression -------------------------------------------------------------------------------- GCGGGCGG -------------------------------------------------------------------------------- Time 30.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:384675-384795 2.19e-01 120 chr4:423470-423590 2.54e-01 51_[+1(9.17e-05)]_61 chr3L:6111137-6111257 2.17e-03 27_[+1(7.63e-05)]_11_[+4(1.36e-05)]_\ 66 chr2L:3612199-3612319 1.40e-02 73_[+2(5.93e-05)]_39 chr2L:7359309-7359429 1.66e-01 120 chrX:17765082-17765202 1.75e-02 19_[+3(4.92e-05)]_93 chr3R:16632837-16632957 1.45e-03 52_[+3(6.54e-05)]_60 chr3L:5846341-5846461 2.02e-01 120 chrX:2143050-2143170 2.75e-01 120 chr3R:16013753-16013873 4.33e-02 120 chr3R:6874550-6874670 1.29e-04 84_[+4(5.55e-05)]_28 chr2R:11703135-11703255 1.62e-02 34_[+2(2.94e-05)]_78 chr3R:21388692-21388812 1.17e-01 120 chr2L:18793398-18793518 8.44e-04 109_[+1(1.54e-05)]_3 chr2R:25051509-25051629 2.62e-01 120 chr2R:15671624-15671744 5.71e-01 120 chr2L:12689505-12689625 5.98e-03 80_[+2(2.94e-05)]_32 chr3R:6725281-6725401 5.37e-01 120 chr3R:21456933-21457053 2.59e-01 120 chr2L:18774200-18774320 2.21e-01 55_[+1(9.17e-05)]_57 chrX:3809229-3809349 5.82e-03 8_[+1(1.54e-05)]_104 chr4:87415-87535 2.18e-01 120 chr3L:5891241-5891361 1.46e-03 13_[+2(5.93e-05)]_34_[+3(1.63e-05)]_\ 57 chr2R:23644428-23644548 1.58e-02 42_[+3(1.63e-05)]_70 chr3L:21818826-21818946 1.09e-01 40_[+1(1.54e-05)]_72 chr3L:5595000-5595120 4.07e-03 45_[+1(1.54e-05)]_19_[+2(2.94e-05)]_\ 40 chrX:17405031-17405151 1.38e-03 48_[+2(2.94e-05)]_64 chrX:4618978-4619098 1.80e-01 120 chr4:996094-996214 1.21e-03 72_[+2(5.93e-05)]_18_[+4(4.16e-05)]_\ 14 chr2L:8817488-8817608 3.93e-02 25_[+1(7.63e-05)]_87 chr3R:11272810-11272930 5.69e-02 10_[+3(3.27e-05)]_102 chr4:418863-418983 1.27e-01 120 chr3R:13929060-13929180 6.31e-02 85_[+1(3.15e-05)]_27 chr3R:32072085-32072205 1.55e-01 120 chrX:4521019-4521139 1.14e-03 5_[+4(5.55e-05)]_107 chr3L:10528385-10528505 6.17e-03 120 chr3R:16410847-16410967 1.21e-01 120 chr3R:18118373-18118493 3.81e-01 120 chrX:8447301-8447421 5.74e-01 120 chr3R:32071815-32071935 1.85e-01 1_[+3(9.91e-05)]_18_[+3(9.91e-05)]_\ 85 chrX:19535516-19535636 2.12e-01 120 chr2L:8820671-8820791 1.24e-01 61_[+1(3.15e-05)]_51 chrX:3808585-3808705 4.08e-03 69_[+4(4.16e-05)]_43 chr2R:11533407-11533527 7.70e-02 120 chr3L:22821497-22821617 1.44e-01 120 chr2L:19772578-19772698 2.05e-02 120 chr2R:8270793-8270913 2.85e-04 40_[+2(8.89e-05)]_43_[+4(8.39e-05)]_\ 2_[+1(7.63e-05)]_11 chr3R:6865027-6865147 9.79e-02 81_[+1(9.17e-05)]_31 chrX:20559702-20559822 8.02e-01 120 chr2R:23572587-23572707 1.12e-01 65_[+3(1.63e-05)]_47 chr2L:3589003-3589123 6.96e-03 33_[+3(1.63e-05)]_79 chr2R:22286103-22286223 1.22e-01 51_[+2(2.94e-05)]_61 chr3R:21392372-21392492 6.91e-01 120 chr3R:6831851-6831971 2.66e-01 120 chr2R:23048317-23048437 4.60e-04 11_[+3(1.63e-05)]_101 chr3R:29701890-29702010 2.11e-01 120 chr3R:28576696-28576816 3.43e-01 19_[+2(5.93e-05)]_93 chr3R:21564684-21564804 5.80e-02 120 chrX:5602444-5602564 1.17e-02 40_[+3(9.91e-05)]_72 chr3R:21474477-21474597 7.58e-03 36_[+2(5.93e-05)]_76 chr3L:6990382-6990502 2.05e-02 53_[+1(4.61e-05)]_59 chr2L:2488378-2488498 9.21e-02 120 chr3L:22132800-22132920 1.87e-01 120 chr3R:11372042-11372162 1.38e-02 120 chr2L:10354055-10354175 5.10e-01 120 chr2R:16235183-16235303 5.16e-01 120 chr2L:503851-503971 4.81e-01 120 chr3R:16406794-16406914 4.49e-01 120 chr3R:30030279-30030399 1.50e-02 63_[+1(9.17e-05)]_10_[+2(5.93e-05)]_\ 31 chr3R:16983123-16983243 9.25e-01 120 chr2R:25122148-25122268 3.24e-02 120 chrX:2681701-2681821 8.33e-03 120 chr2R:23094371-23094491 1.73e-02 73_[+1(3.15e-05)]_39 chr2L:8747578-8747698 1.62e-01 120 chr3L:19670949-19671069 5.73e-03 111_[+4(6.99e-05)]_1 chrX:9765728-9765848 6.37e-02 120 chr3R:8211240-8211360 1.84e-01 44_[+2(5.93e-05)]_68 chr3R:4895714-4895834 3.69e-01 120 chr2L:10295452-10295572 2.82e-02 31_[+2(8.89e-05)]_81 chrX:4647467-4647587 5.67e-02 120 chr2R:14477662-14477782 2.65e-02 62_[+1(3.15e-05)]_50 chr3R:17029974-17030094 7.32e-01 120 chr3R:17599810-17599930 1.57e-04 26_[+5(1.32e-05)]_64_[+4(1.36e-05)]_\ 14 chrX:4600062-4600182 1.56e-01 120 chr3R:8145871-8145991 2.53e-02 104_[+1(1.54e-05)]_8 chrX:2435059-2435179 7.72e-02 51_[+2(2.94e-05)]_61 chr2R:5745320-5745440 1.78e-01 120 chr3R:18266798-18266918 5.02e-03 120 chrX:16175221-16175341 1.55e-01 120 chrX:16236590-16236710 6.86e-02 63_[+2(2.94e-05)]_49 chr3L:371381-371501 2.50e-01 120 chr3L:14088413-14088533 6.72e-02 31_[+3(9.91e-05)]_73_[+3(9.91e-05)] chr3R:21470523-21470643 6.15e-01 120 chr3L:12447238-12447358 3.36e-01 120 chr3R:24787839-24787959 2.81e-03 95_[+2(2.94e-05)]_17 chrX:15379177-15379297 9.02e-03 38_[+1(3.15e-05)]_74 chr2R:9985237-9985357 5.24e-02 62_[+1(4.61e-05)]_50 chr3L:12600405-12600525 3.14e-01 120 chr2L:15109304-15109424 4.77e-01 120 chrX:610176-610296 4.99e-01 120 chr2R:14814401-14814521 6.65e-01 120 chr3R:21528660-21528780 3.43e-01 120 chrX:20629499-20629619 1.64e-03 120 chr3L:8646944-8647064 8.75e-02 32_[+1(7.63e-05)]_80 chr3R:23718430-23718550 8.55e-02 71_[+1(4.61e-05)]_41 chr3R:22053896-22054016 8.80e-02 93_[+1(3.15e-05)]_19 chr2R:11470348-11470468 1.00e-01 78_[+2(5.93e-05)]_34 chr2L:505130-505250 3.92e-02 82_[+3(1.63e-05)]_30 chrX:17772017-17772137 1.77e-01 120 chrX:7230809-7230929 5.57e-02 86_[+2(5.93e-05)]_26 chr3R:23131931-23132051 4.45e-02 120 chr2L:591665-591785 3.72e-01 120 chr2R:20955564-20955684 2.74e-03 106_[+4(1.36e-05)]_6 chr2R:23049596-23049716 5.13e-03 89_[+1(3.15e-05)]_9_[+3(3.27e-05)]_\ 6 chr3R:30928760-30928880 3.97e-02 111_[+3(6.54e-05)]_1 chr2R:9976332-9976452 1.09e-01 120 chr3L:20563893-20564013 1.00e-02 33_[+1(3.15e-05)]_22_[+1(1.54e-05)]_\ 49 chr3R:29706041-29706161 1.29e-02 94_[+1(7.63e-05)]_18 chr2L:9082888-9083008 9.71e-02 120 chr2R:11553225-11553345 2.62e-02 120 chr3R:6879482-6879602 9.37e-02 120 chrX:2546406-2546526 2.58e-02 120 chr2L:2400021-2400141 7.85e-02 120 chrX:7568499-7568619 3.18e-01 120 chr4:421921-422041 1.56e-01 120 chrX:7631531-7631651 3.10e-01 120 chrX:7625682-7625802 6.50e-01 120 chr2L:21806490-21806610 1.16e-01 110_[+3(4.92e-05)]_2 chr2R:15835978-15836098 1.33e-01 50_[+2(2.94e-05)]_62 chr3R:11256955-11257075 5.56e-01 120 chr2L:599679-599799 3.03e-01 [+3(3.27e-05)]_112 chr2L:6532150-6532270 2.97e-02 120 chr2L:5362433-5362553 1.04e-01 120 chrX:4399756-4399876 1.53e-01 120 chrX:7628470-7628590 7.14e-01 120 chr3R:13947562-13947682 4.64e-01 120 chr3R:21077662-21077782 6.86e-02 27_[+1(7.63e-05)]_85 chr2R:11472108-11472228 2.54e-01 120 chrX:17758270-17758390 2.45e-01 120 chr2R:12460068-12460188 1.82e-01 120 chr3R:6986607-6986727 8.76e-02 88_[+2(5.93e-05)]_24 chr3L:12442258-12442378 3.76e-01 120 chr3R:13949699-13949819 1.83e-02 120 chr2R:11563051-11563171 5.75e-01 120 chr3R:21387734-21387854 2.42e-02 56_[+2(2.94e-05)]_56 chr3R:16678143-16678263 1.49e-01 120 chr4:1097792-1097912 1.97e-02 59_[+1(3.15e-05)]_53 chr3R:16385766-16385886 1.86e-01 120 chr3R:23304980-23305100 4.90e-01 120 chr2R:13013011-13013131 7.15e-02 120 chrX:20709816-20709936 5.18e-01 120 chrX:4476833-4476953 9.80e-02 84_[+1(7.63e-05)]_28 chr3L:10409698-10409818 3.70e-01 120 chrX:4089043-4089163 6.36e-01 120 chr2R:22867760-22867880 2.91e-03 15_[+3(1.63e-05)]_97 chr2R:9005723-9005843 1.26e-04 64_[+1(4.61e-05)]_16_[+4(1.36e-05)]_\ 24 chr2R:20956194-20956314 1.23e-02 28_[+2(2.94e-05)]_84 chr2R:20954909-20955029 1.43e-01 120 chr3R:8368675-8368795 6.63e-03 82_[+3(6.54e-05)]_[+1(3.15e-05)]_22 chr2L:3685610-3685730 7.26e-04 77_[+3(4.92e-05)]_35 chr4:1097991-1098111 9.59e-01 120 chrX:16244145-16244265 4.67e-01 120 chr3L:373017-373137 2.04e-01 120 chrX:2037737-2037857 5.25e-01 120 chr2L:3617723-3617843 1.47e-02 65_[+2(2.94e-05)]_47 chrX:4554880-4555000 5.99e-01 120 chr3R:8685116-8685236 5.29e-02 120 chr3R:23296249-23296369 4.17e-02 94_[+1(1.54e-05)]_18 chr2L:19769834-19769954 2.82e-02 33_[+2(2.94e-05)]_79 chr3R:23199088-23199208 1.01e-03 102_[+3(1.63e-05)]_10 chr3L:21462590-21462710 6.26e-01 120 chr3R:16418223-16418343 7.79e-02 33_[+2(2.94e-05)]_79 chr3R:30909191-30909311 1.22e-03 20_[+4(2.73e-05)]_31_[+2(5.93e-05)]_\ 53 chr2R:18013888-18014008 4.42e-02 120 chrX:7512888-7513008 3.87e-01 120 chr2R:19263596-19263716 1.29e-02 23_[+2(5.93e-05)]_89 chr3R:14709625-14709745 7.30e-02 120 chrX:16912097-16912217 1.15e-03 15_[+4(2.73e-05)]_45_[+1(1.54e-05)]_\ 44 chrX:12615861-12615981 1.64e-01 120 chr2L:10032477-10032597 1.94e-01 13_[+2(8.89e-05)]_99 chr3R:11343552-11343672 5.03e-01 120 chr2L:368805-368925 2.58e-03 73_[+1(3.15e-05)]_12_[+4(6.99e-05)]_\ 19 chr2R:23626356-23626476 4.97e-02 120 chr3L:12328840-12328960 4.83e-02 45_[+2(8.89e-05)]_67 chrX:4412725-4412845 8.36e-01 120 chr3R:8686602-8686722 5.75e-02 70_[+1(7.63e-05)]_42 chr3L:1738900-1739020 4.11e-03 56_[+4(6.99e-05)]_2_[+2(2.94e-05)]_\ 46 chr3R:17602028-17602148 2.61e-02 120 chr3L:1929089-1929209 5.82e-01 120 chrX:16209834-16209954 4.73e-02 120 chr2L:7303400-7303520 2.65e-02 55_[+1(9.17e-05)]_57 chr3R:16010058-16010178 9.95e-03 12_[+3(9.91e-05)]_100 chr2R:24812111-24812231 2.89e-01 120 chr2L:585462-585582 9.20e-03 120 chr3R:16000674-16000794 2.47e-01 120 chrX:1162063-1162183 1.21e-01 120 chr3R:17666631-17666751 6.39e-01 120 chrX:7161860-7161980 4.86e-03 99_[+4(5.55e-05)]_13 chr3R:23207417-23207537 1.78e-01 120 chr3L:4843550-4843670 1.69e-01 120 chrX:4589135-4589255 1.52e-01 120 chr2L:18783486-18783606 4.28e-01 120 chr3R:30617605-30617725 4.63e-02 120 chr3R:15616855-15616975 7.74e-02 120 chr3R:21551663-21551783 4.04e-01 120 chr3R:20846907-20847027 3.35e-01 120 chr2L:319863-319983 1.13e-01 81_[+1(9.17e-05)]_31 chr2R:11489713-11489833 5.79e-01 120 chr2L:2448661-2448781 9.21e-01 120 chr2L:19765532-19765652 5.87e-03 91_[+4(2.73e-05)]_21 chr3R:21534370-21534490 1.90e-02 15_[+3(6.54e-05)]_97 chr3L:4159437-4159557 1.62e-01 120 chr2L:1967449-1967569 4.35e-04 84_[+4(1.36e-05)]_8_[+2(8.89e-05)]_\ 12 chr4:426131-426251 8.96e-02 46_[+3(3.27e-05)]_66 chr2R:15839053-15839173 5.58e-01 120 chr3R:29767786-29767906 4.08e-02 120 chr4:978602-978722 3.31e-01 120 chr3R:26081285-26081405 7.05e-02 34_[+2(2.94e-05)]_78 chrX:8637113-8637233 3.56e-02 108_[+1(3.15e-05)]_4 chrX:17339817-17339937 8.43e-02 120 chr2L:18806144-18806264 1.76e-01 120 chrX:7368474-7368594 1.21e-03 8_[+2(2.94e-05)]_17_[+1(1.54e-05)]_\ 79 chr3R:8702365-8702485 3.29e-03 8_[+3(8.20e-05)]_40_[+4(4.16e-05)]_\ 56 chrX:7768271-7768391 7.06e-01 120 chr4:428373-428493 2.44e-04 56_[+4(5.55e-05)]_48_[+3(1.63e-05)] chr3R:7961451-7961571 4.40e-01 120 chr3L:21610708-21610828 2.71e-01 120 chr2L:11345193-11345313 2.65e-02 120 chr3R:6803904-6804024 1.37e-01 120 chr3R:21471319-21471439 2.24e-04 85_[+2(2.94e-05)]_11_[+5(1.32e-05)]_\ 8 chr3L:6117066-6117186 3.74e-01 95_[+3(8.20e-05)]_17 chr3R:6853111-6853231 8.79e-01 120 chr3R:8134639-8134759 3.03e-03 95_[+2(2.94e-05)]_17 chr2R:5732330-5732450 2.20e-01 120 chr3R:11310801-11310921 8.02e-01 120 chr3R:14335673-14335793 1.42e-01 95_[+2(5.93e-05)]_17 chrX:4601529-4601649 1.14e-01 120 chr2R:25068567-25068687 2.38e-01 120 chr2R:25119562-25119682 2.83e-02 66_[+1(1.54e-05)]_46 chr3L:6438907-6439027 1.83e-02 70_[+3(4.92e-05)]_42 chr3R:16427625-16427745 5.01e-02 120 chr2L:18364531-18364651 5.29e-02 120 chr2L:8799135-8799255 2.37e-01 120 chr3L:10257975-10258095 5.22e-01 120 chr2R:25244651-25244771 5.18e-01 120 chr3L:12589044-12589164 1.68e-02 120 chr3R:21459055-21459175 3.93e-03 43_[+3(3.27e-05)]_69 chr3R:4843110-4843230 7.15e-02 111_[+1(3.15e-05)]_1 chrX:9727438-9727558 2.39e-02 27_[+5(1.32e-05)]_85 chrX:5540718-5540838 2.04e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************