******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Neu2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:1758992-1759112 1.0000 120 chr3R:23145820-23145940 1.0000 120 chr2R:4377507-4377627 1.0000 120 chr3L:25844140-25844260 1.0000 120 chr3L:9142137-9142257 1.0000 120 chr2R:5071896-5072016 1.0000 120 chr2L:12754632-12754752 1.0000 120 chr3L:23592844-23592964 1.0000 120 chr3R:3623535-3623655 1.0000 120 chr4:954474-954594 1.0000 120 chrX:5597696-5597816 1.0000 120 chr3R:25893795-25893915 1.0000 120 chr3R:10957728-10957848 1.0000 120 chr3R:3743339-3743459 1.0000 120 chrX:18977666-18977786 1.0000 120 chrX:22872741-22872861 1.0000 120 chr2R:968643-968763 1.0000 120 chr3L:12491164-12491284 1.0000 120 chr3R:23406886-23407006 1.0000 120 chrX:22258503-22258623 1.0000 120 chr2L:23028659-23028779 1.0000 120 chr3R:31984431-31984551 1.0000 120 chr2L:15089982-15090102 1.0000 120 chr3R:19340002-19340122 1.0000 120 chr2R:499375-499495 1.0000 120 chr3R:6840826-6840946 1.0000 120 chr2R:18636637-18636757 1.0000 120 chr3L:27341680-27341800 1.0000 120 chr2R:5480184-5480304 1.0000 120 chr2R:23987048-23987168 1.0000 120 chr3R:22581061-22581181 1.0000 120 chr3R:23879907-23880027 1.0000 120 chr3R:30328614-30328734 1.0000 120 chrX:10788255-10788375 1.0000 120 chr3R:21429220-21429340 1.0000 120 chr3L:6192548-6192668 1.0000 120 chr3L:21116269-21116389 1.0000 120 chr3R:14769404-14769524 1.0000 120 chr3R:31476812-31476932 1.0000 120 chr2R:20272126-20272246 1.0000 120 chr2L:15311782-15311902 1.0000 120 chr3L:23214297-23214417 1.0000 120 chr3R:29298857-29298977 1.0000 120 chr2R:13299212-13299332 1.0000 120 chr2R:5673145-5673265 1.0000 120 chrX:15667405-15667525 1.0000 120 chr2R:11402609-11402729 1.0000 120 chr2L:1178008-1178128 1.0000 120 chr3L:21323787-21323907 1.0000 120 chr2R:6814420-6814540 1.0000 120 chr3L:24282372-24282492 1.0000 120 chr2R:14502341-14502461 1.0000 120 chr3R:30041821-30041941 1.0000 120 chr2L:7590144-7590264 1.0000 120 chr3R:18722458-18722578 1.0000 120 chr3R:18080582-18080702 1.0000 120 chrX:9533876-9533996 1.0000 120 chr2R:5119270-5119390 1.0000 120 chr3R:21833243-21833363 1.0000 120 chr2R:6814216-6814336 1.0000 120 chr2R:11735712-11735832 1.0000 120 chr3R:6169773-6169893 1.0000 120 chr2R:13002987-13003107 1.0000 120 chr2L:10234780-10234900 1.0000 120 chr3L:27390496-27390616 1.0000 120 chr2L:199664-199784 1.0000 120 chr3L:23328958-23329078 1.0000 120 chr3L:22725559-22725679 1.0000 120 chr2R:13197643-13197763 1.0000 120 chr3R:2167606-2167726 1.0000 120 chr2R:16149535-16149655 1.0000 120 chr2L:10998675-10998795 1.0000 120 chr4:923505-923625 1.0000 120 chr3L:3091604-3091724 1.0000 120 chr2R:24915422-24915542 1.0000 120 chr3L:16679884-16680004 1.0000 120 chr3R:4462179-4462299 1.0000 120 chr2R:4396621-4396741 1.0000 120 chr2L:13591545-13591665 1.0000 120 chr3R:4821739-4821859 1.0000 120 chr3L:14434376-14434496 1.0000 120 chr2L:3854475-3854595 1.0000 120 chrX:10360293-10360413 1.0000 120 chr2L:14440506-14440626 1.0000 120 chr3R:18549674-18549794 1.0000 120 chrX:5756555-5756675 1.0000 120 chr2R:3908504-3908624 1.0000 120 chr2R:5192524-5192644 1.0000 120 chr2L:22746645-22746765 1.0000 120 chr3R:30719065-30719185 1.0000 120 chr2R:9973412-9973532 1.0000 120 chr3R:4634451-4634571 1.0000 120 chr2R:5061934-5062054 1.0000 120 chr3L:5015107-5015227 1.0000 120 chr2R:18517445-18517565 1.0000 120 chr3R:6010153-6010273 1.0000 120 chr3R:8367602-8367722 1.0000 120 chrX:15484527-15484647 1.0000 120 chrX:15321137-15321257 1.0000 120 chrX:19528330-19528450 1.0000 120 chr2L:5422490-5422610 1.0000 120 chr3R:4821940-4822060 1.0000 120 chr2R:18655209-18655329 1.0000 120 chr3L:176797-176917 1.0000 120 chr3L:15700836-15700956 1.0000 120 chrX:17591266-17591386 1.0000 120 chrX:1824018-1824138 1.0000 120 chrX:16484735-16484855 1.0000 120 chr3R:4833511-4833631 1.0000 120 chr3R:18901780-18901900 1.0000 120 chr3L:11165182-11165302 1.0000 120 chr3R:21437063-21437183 1.0000 120 chr3R:21237426-21237546 1.0000 120 chr3L:6581923-6582043 1.0000 120 chr3L:15143386-15143506 1.0000 120 chr3L:16314872-16314992 1.0000 120 chr4:1127142-1127262 1.0000 120 chr2L:22636355-22636475 1.0000 120 chr3L:22094605-22094725 1.0000 120 chr3R:8149957-8150077 1.0000 120 chr2R:13339305-13339425 1.0000 120 chr3R:17681939-17682059 1.0000 120 chrX:8643655-8643775 1.0000 120 chr3L:26818932-26819052 1.0000 120 chr2L:16323774-16323894 1.0000 120 chr2L:6246320-6246440 1.0000 120 chr2R:19660077-19660197 1.0000 120 chr2R:1725262-1725382 1.0000 120 chr3R:31872731-31872851 1.0000 120 chr2L:19231456-19231576 1.0000 120 chrX:17492277-17492397 1.0000 120 chr3L:16799627-16799747 1.0000 120 chrX:20753426-20753546 1.0000 120 chr2L:10230527-10230647 1.0000 120 chrX:14232854-14232974 1.0000 120 chr3R:16700859-16700979 1.0000 120 chr2R:22420243-22420363 1.0000 120 chrX:186041-186161 1.0000 120 chr3R:15392158-15392278 1.0000 120 chrX:7407284-7407404 1.0000 120 chrX:115703-115823 1.0000 120 chr2L:7303555-7303675 1.0000 120 chrX:54294-54414 1.0000 120 chr2R:5673350-5673470 1.0000 120 chrX:8056212-8056332 1.0000 120 chr3R:11592396-11592516 1.0000 120 chr2L:19869596-19869716 1.0000 120 chr3L:4363551-4363671 1.0000 120 chr3R:12696783-12696903 1.0000 120 chr3L:11562900-11563020 1.0000 120 chr3L:3070293-3070413 1.0000 120 chr3L:25230062-25230182 1.0000 120 chr3L:25847162-25847282 1.0000 120 chr3R:17111529-17111649 1.0000 120 chr2R:4448927-4449047 1.0000 120 chr3R:11448081-11448201 1.0000 120 chrX:22373575-22373695 1.0000 120 chr3L:19044321-19044441 1.0000 120 chr2R:25200121-25200241 1.0000 120 chr2R:25204880-25205000 1.0000 120 chrX:18657972-18658092 1.0000 120 chr3L:11533144-11533264 1.0000 120 chr3L:20240288-20240408 1.0000 120 chr3L:23214496-23214616 1.0000 120 chr3L:16651993-16652113 1.0000 120 chr2R:5108961-5109081 1.0000 120 chr2R:14420056-14420176 1.0000 120 chr2R:12565019-12565139 1.0000 120 chr2L:14285139-14285259 1.0000 120 chr2R:6204432-6204552 1.0000 120 chr3L:21490471-21490591 1.0000 120 chr2R:21684761-21684881 1.0000 120 chr2R:24113476-24113596 1.0000 120 chr2R:11379777-11379897 1.0000 120 chr2R:7961904-7962024 1.0000 120 chr2R:2094925-2095045 1.0000 120 chr2R:12776788-12776908 1.0000 120 chr3L:14220750-14220870 1.0000 120 chrX:18688961-18689081 1.0000 120 chr3L:14801874-14801994 1.0000 120 chr2R:1514040-1514160 1.0000 120 chr2L:6960088-6960208 1.0000 120 chr2L:11651077-11651197 1.0000 120 chr3R:8840451-8840571 1.0000 120 chr3L:20293662-20293782 1.0000 120 chr3R:20635010-20635130 1.0000 120 chr3R:12381811-12381931 1.0000 120 chr4:1062995-1063115 1.0000 120 chr3L:11554971-11555091 1.0000 120 chrX:2261426-2261546 1.0000 120 chr3R:7472314-7472434 1.0000 120 chr3R:30718862-30718982 1.0000 120 chr3L:3339282-3339402 1.0000 120 chr2L:6392543-6392663 1.0000 120 chr2R:7635550-7635670 1.0000 120 chr3L:20242752-20242872 1.0000 120 chr3L:20293401-20293521 1.0000 120 chr3R:8277605-8277725 1.0000 120 chr3R:8367804-8367924 1.0000 120 chr2R:15037957-15038077 1.0000 120 chr2L:10344394-10344514 1.0000 120 chr2R:18850277-18850397 1.0000 120 chr2R:1515326-1515446 1.0000 120 chr2L:16657268-16657388 1.0000 120 chr3R:18738211-18738331 1.0000 120 chr2L:20981606-20981726 1.0000 120 chr3R:19792172-19792292 1.0000 120 chrX:16415081-16415201 1.0000 120 chr2L:3822187-3822307 1.0000 120 chr2R:7805378-7805498 1.0000 120 chr4:491088-491208 1.0000 120 chr3L:26646587-26646707 1.0000 120 chr3R:10863728-10863848 1.0000 120 chr3L:27089069-27089189 1.0000 120 chr3R:16261696-16261816 1.0000 120 chr3L:12694660-12694780 1.0000 120 chrX:18657771-18657891 1.0000 120 chr3L:22094808-22094928 1.0000 120 chr2L:10334119-10334239 1.0000 120 chr3L:20405695-20405815 1.0000 120 chr2R:6200966-6201086 1.0000 120 chr2R:17572952-17573072 1.0000 120 chr2R:8083206-8083326 1.0000 120 chr2L:15478227-15478347 1.0000 120 chr3R:27931677-27931797 1.0000 120 chr2R:5682607-5682727 1.0000 120 chr2L:6246528-6246648 1.0000 120 chr3L:20491642-20491762 1.0000 120 chr2R:15291656-15291776 1.0000 120 chr3R:10635889-10636009 1.0000 120 chr2L:12028952-12029072 1.0000 120 chr3L:1741744-1741864 1.0000 120 chr3L:11693156-11693276 1.0000 120 chr3R:4973630-4973750 1.0000 120 chr3R:5404101-5404221 1.0000 120 chr3R:11391196-11391316 1.0000 120 chr2R:19390261-19390381 1.0000 120 chr3R:22134794-22134914 1.0000 120 chr3L:16580202-16580322 1.0000 120 chr3R:13648439-13648559 1.0000 120 chr2R:24965372-24965492 1.0000 120 chr3L:11165395-11165515 1.0000 120 chr2R:17573159-17573279 1.0000 120 chr4:466802-466922 1.0000 120 chr2R:4702804-4702924 1.0000 120 chr3R:4973429-4973549 1.0000 120 chr2L:294466-294586 1.0000 120 chr3R:7093391-7093511 1.0000 120 chr2R:10821457-10821577 1.0000 120 chr2R:7477178-7477298 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Neu2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Neu2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.267 C 0.231 G 0.228 T 0.274 Background letter frequencies (from file dataset with add-one prior applied): A 0.267 C 0.231 G 0.228 T 0.274 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ACCACYAA MEME-1 width = 8 sites = 53 llr = 444 E-value = 1.0e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACCACYAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 7:1a:2aa pos.-specific C 2a7:a4:: probability G 1::::::: matrix T ::3::4:: bits 2.1 * * 1.9 * ** ** 1.7 * ** ** 1.5 * ** ** Relative 1.3 * ** ** Entropy 1.1 * ** ** (12.1 bits) 0.9 ***** ** 0.6 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACCACTAA consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACYAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6392543-6392663 46 1.45e-05 ATTTATGGCT ACCACCAA ATGGCACGAG chr3R:8840451-8840571 56 1.45e-05 GCGACGCTTG ACCACCAA TTGCACCGTG chr3L:11533144-11533264 33 1.45e-05 TGCATGAGGC ACCACCAA ATTGAAAAAC chr3L:11562900-11563020 45 1.45e-05 GCCCCAGATG ACCACCAA ATTCAACGAG chr2L:6246320-6246440 18 1.45e-05 TTTCGAATGC ACCACCAA ACGACAAGGA chrX:15321137-15321257 71 1.45e-05 CAACGGGGTG ACCACCAA TGGACACGGA chr2L:13591545-13591665 61 1.45e-05 gctggttgca aCCACCAA CTGTGACTGT chr2R:5673145-5673265 18 1.45e-05 CATTCAAATG ACCACCAA ATGCACGAAA chr3R:31984431-31984551 10 1.45e-05 GGTGATCGC ACCACCAA AGGGCACAAA chr3R:10957728-10957848 45 1.45e-05 CAGAAGCATG ACCACCAA TTAACGCAAG chr2L:10344394-10344514 62 3.16e-05 CCTAACGTGA ACCACTAA AGGACGGCAA chr2L:11651077-11651197 70 3.16e-05 ACGGAAATTT ACCACTAA ATGACGACCA chrX:8056212-8056332 103 3.16e-05 ATCACAATGT ACCACTAA AAGTGCGGCG chr3R:15392158-15392278 87 3.16e-05 TCAATGACTT ACCACTAA TATCTGGTTA chr3R:8149957-8150077 21 3.16e-05 TCAGCGGCTG ACCACTAA AATGGGTCAA chr3R:6169773-6169893 28 3.16e-05 GCTCATGCTG ACCACTAA AGAGGGCACC chr3L:21323787-21323907 82 3.16e-05 GCTCGGAATG ACCACTAA TATGCACTGG chr3R:23406886-23407006 94 3.16e-05 TTACATGATA ACCACTAA TAGGTGGGTT chr2R:12776788-12776908 101 6.55e-05 TGACAAGGAG ACCACAAA CAGCGCTGGT chr2R:25204880-25205000 22 6.55e-05 AGTTGAGCTA ACCACAAA ATAGTGGCAA chr2L:10230527-10230647 90 6.55e-05 GCGAGTGATA ACCACAAA ATGGCGAAGA chr2L:1178008-1178128 77 6.55e-05 TTAGTGGATT ACTACCAA TTGCGATTAT chrX:22872741-22872861 68 6.55e-05 TAAGGTGGCA ACCACAAA GCAAAAAAGT chr2R:24965372-24965492 20 8.59e-05 TCCTCTTATT ACTACTAA AGTGCATTCA chr3R:10635889-10636009 31 8.59e-05 ATTAAAAATT ACTACTAA TGTGCACCTT chrX:18688961-18689081 15 8.59e-05 CGGGCGGATA ACTACTAA CTTATCGCTA chr3R:17681939-17682059 61 8.59e-05 AAGTGTGTCG ACTACTAA TTGGCACCTT chr4:1127142-1127262 9 8.59e-05 CGTTTCGC ACTACTAA AAAGGTTTGC chr3L:11165182-11165302 61 8.59e-05 ATGAGGGATT ACTACTAA TTTGACCAAG chr2L:14440506-14440626 3 8.59e-05 TA ACTACTAA ATAAGCAGCT chr2R:20272126-20272246 81 8.59e-05 ACGACTAATA ACTACTAA TTATCGTTGT chr2R:1515326-1515446 42 9.84e-05 cactcttctg cccaccaa ccgcccaaaa chr2R:11402609-11402729 52 9.84e-05 AAATGCGTCG CCCACCAA ATGACATTTG chrX:22258503-22258623 37 9.84e-05 gggatcgaat cccaccaa ttgacgtagg chr2L:20981606-20981726 37 1.13e-04 AAAATATGTG CCCACTAA TTGACAATTA chr3L:20242752-20242872 3 1.13e-04 CG CCCACTAA ATAGCAATCA chrX:5756555-5756675 43 1.13e-04 AAGGCTAAAA CCCACTAA ATAATCGGCA chr3L:24282372-24282492 18 1.13e-04 cactataacg cccactaa ccgccgattt chr3L:16580202-16580322 57 1.45e-04 ATTCCGTTAT ACTACAAA CTCAACCGCT chr2R:8083206-8083326 90 1.45e-04 CACTGTTATG GCCACCAA AAGCCAGCCG chr2R:7805378-7805498 31 1.45e-04 TGTGTAGATG ACTACAAA CTGACCACGA chr2R:15037957-15038077 92 1.45e-04 ACCACTATTT GCCACCAA AACTTTGGGA chr3L:16799627-16799747 49 1.45e-04 TATCGCCGCT GCCACCAA TGGCCGAACT chr3L:27390496-27390616 32 1.45e-04 CCTCTTCGCC ACTACAAA TCGACAACTG chr3L:3339282-3339402 82 1.77e-04 AGACCCAAGC ACAACCAA ATGACTGCAC chr3L:25230062-25230182 53 1.77e-04 tgcagctgca gccactaa tacggagata chrX:54294-54414 47 1.77e-04 ccttcgatga acaaccaa tctacaattt chr2L:12754632-12754752 73 1.77e-04 AGACACGATT ACAACCAA ATGACACAGA chr2R:21684761-21684881 69 2.26e-04 GATCCCGGTT ACAACTAA GTTGCTTTTT chr2R:9973412-9973532 68 2.26e-04 CGAATCCGTA CCCACAAA TCGGCTAATC chr2L:1758992-1759112 44 2.26e-04 ATAAACGATA CCTACCAA ATCACTCATT chr2L:22636355-22636475 25 2.44e-04 tagatagata cctactaa acagaggtac chr3L:9142137-9142257 25 2.58e-04 CCACAAAATT ACCACGAA TTACTACCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACYAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6392543-6392663 1.4e-05 45_[+1]_67 chr3R:8840451-8840571 1.4e-05 55_[+1]_57 chr3L:11533144-11533264 1.4e-05 32_[+1]_80 chr3L:11562900-11563020 1.4e-05 44_[+1]_68 chr2L:6246320-6246440 1.4e-05 17_[+1]_95 chrX:15321137-15321257 1.4e-05 70_[+1]_42 chr2L:13591545-13591665 1.4e-05 60_[+1]_52 chr2R:5673145-5673265 1.4e-05 17_[+1]_95 chr3R:31984431-31984551 1.4e-05 9_[+1]_103 chr3R:10957728-10957848 1.4e-05 44_[+1]_68 chr2L:10344394-10344514 3.2e-05 61_[+1]_51 chr2L:11651077-11651197 3.2e-05 69_[+1]_43 chrX:8056212-8056332 3.2e-05 102_[+1]_10 chr3R:15392158-15392278 3.2e-05 86_[+1]_26 chr3R:8149957-8150077 3.2e-05 20_[+1]_92 chr3R:6169773-6169893 3.2e-05 27_[+1]_85 chr3L:21323787-21323907 3.2e-05 81_[+1]_31 chr3R:23406886-23407006 3.2e-05 93_[+1]_19 chr2R:12776788-12776908 6.6e-05 100_[+1]_12 chr2R:25204880-25205000 6.6e-05 21_[+1]_91 chr2L:10230527-10230647 6.6e-05 89_[+1]_23 chr2L:1178008-1178128 6.6e-05 76_[+1]_36 chrX:22872741-22872861 6.6e-05 67_[+1]_45 chr2R:24965372-24965492 8.6e-05 19_[+1]_93 chr3R:10635889-10636009 8.6e-05 30_[+1]_82 chrX:18688961-18689081 8.6e-05 14_[+1]_98 chr3R:17681939-17682059 8.6e-05 60_[+1]_52 chr4:1127142-1127262 8.6e-05 8_[+1]_104 chr3L:11165182-11165302 8.6e-05 60_[+1]_52 chr2L:14440506-14440626 8.6e-05 2_[+1]_110 chr2R:20272126-20272246 8.6e-05 80_[+1]_32 chr2R:1515326-1515446 9.8e-05 41_[+1]_71 chr2R:11402609-11402729 9.8e-05 51_[+1]_61 chrX:22258503-22258623 9.8e-05 36_[+1]_76 chr2L:20981606-20981726 0.00011 36_[+1]_76 chr3L:20242752-20242872 0.00011 2_[+1]_110 chrX:5756555-5756675 0.00011 42_[+1]_70 chr3L:24282372-24282492 0.00011 17_[+1]_95 chr3L:16580202-16580322 0.00015 56_[+1]_56 chr2R:8083206-8083326 0.00015 89_[+1]_23 chr2R:7805378-7805498 0.00015 30_[+1]_82 chr2R:15037957-15038077 0.00015 91_[+1]_21 chr3L:16799627-16799747 0.00015 48_[+1]_64 chr3L:27390496-27390616 0.00015 31_[+1]_81 chr3L:3339282-3339402 0.00018 81_[+1]_31 chr3L:25230062-25230182 0.00018 52_[+1]_60 chrX:54294-54414 0.00018 46_[+1]_66 chr2L:12754632-12754752 0.00018 72_[+1]_40 chr2R:21684761-21684881 0.00023 68_[+1]_44 chr2R:9973412-9973532 0.00023 67_[+1]_45 chr2L:1758992-1759112 0.00023 43_[+1]_69 chr2L:22636355-22636475 0.00024 24_[+1]_88 chr3L:9142137-9142257 0.00026 24_[+1]_88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACYAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACCACYAA width=8 seqs=53 chr2L:6392543-6392663 ( 46) ACCACCAA 1 chr3R:8840451-8840571 ( 56) ACCACCAA 1 chr3L:11533144-11533264 ( 33) ACCACCAA 1 chr3L:11562900-11563020 ( 45) ACCACCAA 1 chr2L:6246320-6246440 ( 18) ACCACCAA 1 chrX:15321137-15321257 ( 71) ACCACCAA 1 chr2L:13591545-13591665 ( 61) ACCACCAA 1 chr2R:5673145-5673265 ( 18) ACCACCAA 1 chr3R:31984431-31984551 ( 10) ACCACCAA 1 chr3R:10957728-10957848 ( 45) ACCACCAA 1 chr2L:10344394-10344514 ( 62) ACCACTAA 1 chr2L:11651077-11651197 ( 70) ACCACTAA 1 chrX:8056212-8056332 ( 103) ACCACTAA 1 chr3R:15392158-15392278 ( 87) ACCACTAA 1 chr3R:8149957-8150077 ( 21) ACCACTAA 1 chr3R:6169773-6169893 ( 28) ACCACTAA 1 chr3L:21323787-21323907 ( 82) ACCACTAA 1 chr3R:23406886-23407006 ( 94) ACCACTAA 1 chr2R:12776788-12776908 ( 101) ACCACAAA 1 chr2R:25204880-25205000 ( 22) ACCACAAA 1 chr2L:10230527-10230647 ( 90) ACCACAAA 1 chr2L:1178008-1178128 ( 77) ACTACCAA 1 chrX:22872741-22872861 ( 68) ACCACAAA 1 chr2R:24965372-24965492 ( 20) ACTACTAA 1 chr3R:10635889-10636009 ( 31) ACTACTAA 1 chrX:18688961-18689081 ( 15) ACTACTAA 1 chr3R:17681939-17682059 ( 61) ACTACTAA 1 chr4:1127142-1127262 ( 9) ACTACTAA 1 chr3L:11165182-11165302 ( 61) ACTACTAA 1 chr2L:14440506-14440626 ( 3) ACTACTAA 1 chr2R:20272126-20272246 ( 81) ACTACTAA 1 chr2R:1515326-1515446 ( 42) CCCACCAA 1 chr2R:11402609-11402729 ( 52) CCCACCAA 1 chrX:22258503-22258623 ( 37) CCCACCAA 1 chr2L:20981606-20981726 ( 37) CCCACTAA 1 chr3L:20242752-20242872 ( 3) CCCACTAA 1 chrX:5756555-5756675 ( 43) CCCACTAA 1 chr3L:24282372-24282492 ( 18) CCCACTAA 1 chr3L:16580202-16580322 ( 57) ACTACAAA 1 chr2R:8083206-8083326 ( 90) GCCACCAA 1 chr2R:7805378-7805498 ( 31) ACTACAAA 1 chr2R:15037957-15038077 ( 92) GCCACCAA 1 chr3L:16799627-16799747 ( 49) GCCACCAA 1 chr3L:27390496-27390616 ( 32) ACTACAAA 1 chr3L:3339282-3339402 ( 82) ACAACCAA 1 chr3L:25230062-25230182 ( 53) GCCACTAA 1 chrX:54294-54414 ( 47) ACAACCAA 1 chr2L:12754632-12754752 ( 73) ACAACCAA 1 chr2R:21684761-21684881 ( 69) ACAACTAA 1 chr2R:9973412-9973532 ( 68) CCCACAAA 1 chr2L:1758992-1759112 ( 44) CCTACCAA 1 chr2L:22636355-22636475 ( 25) CCTACTAA 1 chr3L:9142137-9142257 ( 25) ACCACGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACYAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2363 E= 1.0e-011 146 -29 -160 -1237 -1237 211 -1237 -1237 -182 151 -1237 -5 191 -1237 -1237 -1237 -1237 211 -1237 -1237 -82 78 -359 67 191 -1237 -1237 -1237 191 -1237 -1237 -1237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACYAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 1.0e-011 0.735849 0.188679 0.075472 0.000000 0.000000 1.000000 0.000000 0.000000 0.075472 0.660377 0.000000 0.264151 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.150943 0.396226 0.018868 0.433962 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACYAA MEME-1 regular expression -------------------------------------------------------------------------------- AC[CT]AC[TC]AA -------------------------------------------------------------------------------- Time 7.63 secs. ******************************************************************************** ******************************************************************************** MOTIF TTRGTGGT MEME-2 width = 8 sites = 43 llr = 357 E-value = 2.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTRGTGGT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::3::31: pos.-specific C ::1:::1: probability G ::6a:77: matrix T aa::a1:a bits 2.1 * 1.9 * ** * 1.7 ** ** * 1.5 ** ** * Relative 1.3 ** ** * Entropy 1.1 ** ** ** (12.0 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGGTGGT consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRGTGGT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:15478227-15478347 98 1.52e-05 CTGTCGCCAT TTGGTGGT GGTTCTTCTT chr3R:16261696-16261816 21 1.52e-05 CGGCTGCTGG TTGGTGGT CGTTAGTAAG chr2R:25204880-25205000 78 1.52e-05 AGAAAGCGAT TTGGTGGT CATAAAAAGA chr2L:19869596-19869716 65 1.52e-05 TGGTGGCCAG TTGGTGGT CATCCACATG chr3R:11592396-11592516 69 1.52e-05 GTAGTGGCCA TTGGTGGT CAGCAGCTTC chr2L:16323774-16323894 54 1.52e-05 CTTAGCTCGC TTGGTGGT CATCAGTGCA chr2L:13591545-13591665 82 1.52e-05 TGACTGTCCT TTGGTGGT TATGCTGCTG chrX:15667405-15667525 47 1.52e-05 GGTTCGCCAT TTGGTGGT GCACAGGTGC chr3L:23592844-23592964 35 1.52e-05 CAATCGGCAA TTGGTGGT ACTCCAACAG chr3R:4973429-4973549 53 3.31e-05 CAATTCTAAA TTAGTGGT TATTATACGA chrX:16415081-16415201 50 3.31e-05 GTTCGCCAAG TTAGTGGT CAATACGATT chr3R:18901780-18901900 33 3.31e-05 CGCCTGTCGC TTAGTGGT AATTTGGAGG chr2L:23028659-23028779 51 3.31e-05 TGAGCGGAAT TTAGTGGT AAATAGTGCC chr3R:13648439-13648559 76 5.09e-05 GGTCAACACT TTGGTAGT CAGTCACATT chr2R:15291656-15291776 63 5.09e-05 TGTCAGTCAA TTGGTAGT TAGTTGATAA chr3R:12696783-12696903 34 5.09e-05 CGATGTCATT TTGGTAGT CGTGTTCATA chr2L:14440506-14440626 106 5.09e-05 GGGTCAGCAG TTGGTAGT GAAGCGC chr3L:6192548-6192668 32 5.09e-05 CCTTGTTGGA TTGGTAGT AGAGCACCAC chr2R:5480184-5480304 25 5.09e-05 TCTTTTTCTT TTGGTAGT CATTTTTGTT chr2L:15089982-15090102 41 5.09e-05 AATGGACCAT TTGGTAGT TGTTGGTTGC chr2L:10344394-10344514 8 6.63e-05 TCCTTAT TTGGTGCT TTATACCGTT chr3R:8277605-8277725 34 6.63e-05 GCTCTGCCAT TTGGTGCT GACAAATCGC chr3R:6840826-6840946 88 6.63e-05 GCCAGACAAT TTGGTGCT AAGCACAAGG chr3R:27931677-27931797 46 9.96e-05 GAACGGGCGT TTGGTGAT TAAGGCTGTG chr4:491088-491208 29 9.96e-05 GCTAGGGTGT TTGGTGAT GGGGGTGTGT chr2R:3908504-3908624 72 9.96e-05 aatgtcctgt ttggtgat tttgggtttt chr3R:4462179-4462299 61 9.96e-05 CGCCCAGCTG TTCGTGGT CTGCCGCTGC chr3R:31476812-31476932 83 9.96e-05 TTAGGGTCAG TTCGTGGT TAACATTTGC chr3R:22134794-22134914 26 1.20e-04 tgtcggtgat ttagtagt gcctgctgtt chr3R:10863728-10863848 110 1.20e-04 GGATGTGCGA TTAGTAGT AAA chr3L:12694660-12694780 37 1.39e-04 CAATGTCTCT TTGGTTGT TAACCAAGCT chrX:5597696-5597816 48 1.39e-04 GGTGAGCCAT TTGGTTGT CAGCAGCGCC chr2R:9973412-9973532 37 1.57e-04 AGCGGCCCAA TTAGTGCT GCAGTAGGCA chr2L:15311782-15311902 60 1.57e-04 TCCGCGTCAC TTAGTGCT TATTGTGTCT chr3R:21429220-21429340 51 1.57e-04 TTGAGCTCAA TTAGTGCT CATCAAAAGC chr4:1062995-1063115 43 1.96e-04 CAACGCACTA TTAGTGAT CATCTTCAAA chr3L:4363551-4363671 30 1.96e-04 TGGGAGTTGT TTAGTGAT AAGTGCAAAA chrX:19528330-19528450 12 1.96e-04 ttAGAGCAAT TTAGTGAT AAATTTCGTA chr3R:11448081-11448201 86 2.35e-04 CAAACGGCAT TTCGTAGT CGCTCGAACT chr3L:27341680-27341800 89 2.35e-04 tctgtgtcag ttcgtagt tcagtaagtg chr2R:25200121-25200241 90 2.50e-04 CCATTTGACT ATGGTGGT CAAGGGTAGT chr3R:4833511-4833631 97 2.50e-04 CATGGGCCAA ATGGTGGT TAAAATTCAC chr3R:30328614-30328734 55 2.71e-04 CCGATGCCTT TTAGTTGT TATCTGCCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRGTGGT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:15478227-15478347 1.5e-05 97_[+2]_15 chr3R:16261696-16261816 1.5e-05 20_[+2]_92 chr2R:25204880-25205000 1.5e-05 77_[+2]_35 chr2L:19869596-19869716 1.5e-05 64_[+2]_48 chr3R:11592396-11592516 1.5e-05 68_[+2]_44 chr2L:16323774-16323894 1.5e-05 53_[+2]_59 chr2L:13591545-13591665 1.5e-05 81_[+2]_31 chrX:15667405-15667525 1.5e-05 46_[+2]_66 chr3L:23592844-23592964 1.5e-05 34_[+2]_78 chr3R:4973429-4973549 3.3e-05 52_[+2]_60 chrX:16415081-16415201 3.3e-05 49_[+2]_63 chr3R:18901780-18901900 3.3e-05 32_[+2]_80 chr2L:23028659-23028779 3.3e-05 50_[+2]_62 chr3R:13648439-13648559 5.1e-05 75_[+2]_37 chr2R:15291656-15291776 5.1e-05 62_[+2]_50 chr3R:12696783-12696903 5.1e-05 33_[+2]_79 chr2L:14440506-14440626 5.1e-05 105_[+2]_7 chr3L:6192548-6192668 5.1e-05 31_[+2]_81 chr2R:5480184-5480304 5.1e-05 24_[+2]_88 chr2L:15089982-15090102 5.1e-05 40_[+2]_72 chr2L:10344394-10344514 6.6e-05 7_[+2]_105 chr3R:8277605-8277725 6.6e-05 33_[+2]_79 chr3R:6840826-6840946 6.6e-05 87_[+2]_25 chr3R:27931677-27931797 0.0001 45_[+2]_67 chr4:491088-491208 0.0001 28_[+2]_84 chr2R:3908504-3908624 0.0001 71_[+2]_41 chr3R:4462179-4462299 0.0001 60_[+2]_52 chr3R:31476812-31476932 0.0001 82_[+2]_30 chr3R:22134794-22134914 0.00012 25_[+2]_87 chr3R:10863728-10863848 0.00012 109_[+2]_3 chr3L:12694660-12694780 0.00014 36_[+2]_76 chrX:5597696-5597816 0.00014 47_[+2]_65 chr2R:9973412-9973532 0.00016 36_[+2]_76 chr2L:15311782-15311902 0.00016 59_[+2]_53 chr3R:21429220-21429340 0.00016 50_[+2]_62 chr4:1062995-1063115 0.0002 42_[+2]_70 chr3L:4363551-4363671 0.0002 29_[+2]_83 chrX:19528330-19528450 0.0002 11_[+2]_101 chr3R:11448081-11448201 0.00023 85_[+2]_27 chr3L:27341680-27341800 0.00023 88_[+2]_24 chr2R:25200121-25200241 0.00025 89_[+2]_23 chr3R:4833511-4833631 0.00025 96_[+2]_16 chr3R:30328614-30328734 0.00027 54_[+2]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRGTGGT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTRGTGGT width=8 seqs=43 chr2L:15478227-15478347 ( 98) TTGGTGGT 1 chr3R:16261696-16261816 ( 21) TTGGTGGT 1 chr2R:25204880-25205000 ( 78) TTGGTGGT 1 chr2L:19869596-19869716 ( 65) TTGGTGGT 1 chr3R:11592396-11592516 ( 69) TTGGTGGT 1 chr2L:16323774-16323894 ( 54) TTGGTGGT 1 chr2L:13591545-13591665 ( 82) TTGGTGGT 1 chrX:15667405-15667525 ( 47) TTGGTGGT 1 chr3L:23592844-23592964 ( 35) TTGGTGGT 1 chr3R:4973429-4973549 ( 53) TTAGTGGT 1 chrX:16415081-16415201 ( 50) TTAGTGGT 1 chr3R:18901780-18901900 ( 33) TTAGTGGT 1 chr2L:23028659-23028779 ( 51) TTAGTGGT 1 chr3R:13648439-13648559 ( 76) TTGGTAGT 1 chr2R:15291656-15291776 ( 63) TTGGTAGT 1 chr3R:12696783-12696903 ( 34) TTGGTAGT 1 chr2L:14440506-14440626 ( 106) TTGGTAGT 1 chr3L:6192548-6192668 ( 32) TTGGTAGT 1 chr2R:5480184-5480304 ( 25) TTGGTAGT 1 chr2L:15089982-15090102 ( 41) TTGGTAGT 1 chr2L:10344394-10344514 ( 8) TTGGTGCT 1 chr3R:8277605-8277725 ( 34) TTGGTGCT 1 chr3R:6840826-6840946 ( 88) TTGGTGCT 1 chr3R:27931677-27931797 ( 46) TTGGTGAT 1 chr4:491088-491208 ( 29) TTGGTGAT 1 chr2R:3908504-3908624 ( 72) TTGGTGAT 1 chr3R:4462179-4462299 ( 61) TTCGTGGT 1 chr3R:31476812-31476932 ( 83) TTCGTGGT 1 chr3R:22134794-22134914 ( 26) TTAGTAGT 1 chr3R:10863728-10863848 ( 110) TTAGTAGT 1 chr3L:12694660-12694780 ( 37) TTGGTTGT 1 chrX:5597696-5597816 ( 48) TTGGTTGT 1 chr2R:9973412-9973532 ( 37) TTAGTGCT 1 chr2L:15311782-15311902 ( 60) TTAGTGCT 1 chr3R:21429220-21429340 ( 51) TTAGTGCT 1 chr4:1062995-1063115 ( 43) TTAGTGAT 1 chr3L:4363551-4363671 ( 30) TTAGTGAT 1 chrX:19528330-19528450 ( 12) TTAGTGAT 1 chr3R:11448081-11448201 ( 86) TTCGTAGT 1 chr3L:27341680-27341800 ( 89) TTCGTAGT 1 chr2R:25200121-25200241 ( 90) ATGGTGGT 1 chr3R:4833511-4833631 ( 97) ATGGTGGT 1 chr3R:30328614-30328734 ( 55) TTAGTTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRGTGGT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8783 E= 2.2e-001 -252 -1207 -1207 180 -1207 -1207 -1207 187 18 -131 141 -1207 -1207 -1207 213 -1207 -1207 -1207 -1207 187 -6 -1207 156 -197 -94 -73 166 -1207 -1207 -1207 -1207 187 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRGTGGT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 2.2e-001 0.046512 0.000000 0.000000 0.953488 0.000000 0.000000 0.000000 1.000000 0.302326 0.093023 0.604651 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.255814 0.000000 0.674419 0.069767 0.139535 0.139535 0.720930 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRGTGGT MEME-2 regular expression -------------------------------------------------------------------------------- TT[GA]GT[GA]GT -------------------------------------------------------------------------------- Time 13.89 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTGGYMA MEME-3 width = 8 sites = 17 llr = 166 E-value = 2.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGGYMA MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:::::6a pos.-specific C :::::44: probability G :a:aa::: matrix T ::a::6:: bits 2.1 * ** 1.9 ***** * 1.7 ***** * 1.5 ***** * Relative 1.3 ***** * Entropy 1.1 ******** (14.1 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGTGGTAA consensus CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGYMA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:466802-466922 78 1.69e-05 GTATGCCAAA AGTGGTAA TCATGGGGTT chr3L:20491642-20491762 72 1.69e-05 CAGGTGATTA AGTGGTAA GTGGACAGGT chrX:18657771-18657891 26 1.69e-05 CACGCACTTC AGTGGTAA TCACATCCCA chrX:16415081-16415201 94 1.69e-05 ATTTCGAAAT AGTGGTAA TCGCACCAAA chr2R:13339305-13339425 79 1.69e-05 TCTGTCAAAA AGTGGTAA ATGAAACTCT chr2R:18517445-18517565 54 1.69e-05 ACAGCCAATC AGTGGTAA TCTTGACCCC chr3L:23214297-23214417 65 1.69e-05 ATCGCCATAT AGTGGTAA ACGTCGCTTT chr3R:14769404-14769524 72 1.69e-05 TGAGCCAAAA AGTGGTAA TGGCATTTCA chr3L:20405695-20405815 39 3.16e-05 CATCGCAAAT AGTGGTCA CCCTGCTGTA chr2L:10234780-10234900 82 3.16e-05 AATGTCGAAG AGTGGTCA TCGCGGTGCT chr3R:30041821-30041941 77 3.16e-05 CGAGCCCAAC AGTGGTCA TCGGAAGCTG chr2R:25204880-25205000 32 4.59e-05 ACCACAAAAT AGTGGCAA ACGGTGAAAT chr3R:23879907-23880027 26 4.59e-05 GAAAAGTGGG AGTGGCAA TGAGAGGTAT chr3L:16580202-16580322 109 5.82e-05 GATTTTCTCA AGTGGCCA TATT chr3R:11592396-11592516 61 5.82e-05 TTGCCGTTGT AGTGGCCA TTGGTGGTCA chr3L:6581923-6582043 112 5.82e-05 CGATTTGCCC AGTGGCCA A chr2R:13002987-13003107 91 5.82e-05 AGTTGCGCTC AGTGGCCA GAGGAACAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGYMA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:466802-466922 1.7e-05 77_[+3]_35 chr3L:20491642-20491762 1.7e-05 71_[+3]_41 chrX:18657771-18657891 1.7e-05 25_[+3]_87 chrX:16415081-16415201 1.7e-05 93_[+3]_19 chr2R:13339305-13339425 1.7e-05 78_[+3]_34 chr2R:18517445-18517565 1.7e-05 53_[+3]_59 chr3L:23214297-23214417 1.7e-05 64_[+3]_48 chr3R:14769404-14769524 1.7e-05 71_[+3]_41 chr3L:20405695-20405815 3.2e-05 38_[+3]_74 chr2L:10234780-10234900 3.2e-05 81_[+3]_31 chr3R:30041821-30041941 3.2e-05 76_[+3]_36 chr2R:25204880-25205000 4.6e-05 31_[+3]_81 chr3R:23879907-23880027 4.6e-05 25_[+3]_87 chr3L:16580202-16580322 5.8e-05 108_[+3]_4 chr3R:11592396-11592516 5.8e-05 60_[+3]_52 chr3L:6581923-6582043 5.8e-05 111_[+3]_1 chr2R:13002987-13003107 5.8e-05 90_[+3]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGYMA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGGYMA width=8 seqs=17 chr4:466802-466922 ( 78) AGTGGTAA 1 chr3L:20491642-20491762 ( 72) AGTGGTAA 1 chrX:18657771-18657891 ( 26) AGTGGTAA 1 chrX:16415081-16415201 ( 94) AGTGGTAA 1 chr2R:13339305-13339425 ( 79) AGTGGTAA 1 chr2R:18517445-18517565 ( 54) AGTGGTAA 1 chr3L:23214297-23214417 ( 65) AGTGGTAA 1 chr3R:14769404-14769524 ( 72) AGTGGTAA 1 chr3L:20405695-20405815 ( 39) AGTGGTCA 1 chr2L:10234780-10234900 ( 82) AGTGGTCA 1 chr3R:30041821-30041941 ( 77) AGTGGTCA 1 chr2R:25204880-25205000 ( 32) AGTGGCAA 1 chr3R:23879907-23880027 ( 26) AGTGGCAA 1 chr3L:16580202-16580322 ( 109) AGTGGCCA 1 chr3R:11592396-11592516 ( 61) AGTGGCCA 1 chr3L:6581923-6582043 ( 112) AGTGGCCA 1 chr2R:13002987-13003107 ( 91) AGTGGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGYMA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 2.6e+002 190 -1073 -1073 -1073 -1073 -1073 213 -1073 -1073 -1073 -1073 187 -1073 -1073 213 -1073 -1073 -1073 213 -1073 -1073 61 -1073 124 114 83 -1073 -1073 190 -1073 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGYMA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.6e+002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.352941 0.000000 0.647059 0.588235 0.411765 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGYMA MEME-3 regular expression -------------------------------------------------------------------------------- AGTGG[TC][AC]A -------------------------------------------------------------------------------- Time 19.98 secs. ******************************************************************************** ******************************************************************************** MOTIF GYTGCCAA MEME-4 width = 8 sites = 20 llr = 193 E-value = 5.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYTGCCAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::a6 pos.-specific C :6::aa:3 probability G a::a:::2 matrix T :4a::::: bits 2.1 * *** 1.9 * ***** 1.7 * ***** 1.5 * ***** Relative 1.3 * ***** Entropy 1.1 ******* (13.9 bits) 0.9 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCCAA consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:20242752-20242872 67 1.25e-05 AGACGATTTC GCTGCCAA GGAGGACGTG chr3L:20240288-20240408 16 1.25e-05 CTGGGTTGTA GCTGCCAA TCGGTGACGG chr2R:22420243-22420363 27 1.25e-05 CACGCGACAG GCTGCCAA AGCGATTCCG chr3R:16700859-16700979 48 1.25e-05 CACTGCGACG GCTGCCAA CTGCCGGTGG chr2L:6246320-6246440 59 1.25e-05 ACTTTACTTC GCTGCCAA CAAAATACAG chr3L:6581923-6582043 27 1.25e-05 AATGTTGGAG GCTGCCAA AGGTTAATCT chr3L:16679884-16680004 15 1.25e-05 GAATTGTTCA GCTGCCAA TTGCTCTGAG chr2L:6246528-6246648 58 2.74e-05 CGCCTGCGAT GTTGCCAA TGTTAATCGA chr3L:20293401-20293521 105 2.74e-05 CAGTCTATTT GTTGCCAA CTTTGATG chr2R:14420056-14420176 12 2.74e-05 TTTCGTGTGT GTTGCCAA TAAGTTATCG chrX:20753426-20753546 60 2.74e-05 ACCCACGACA GTTGCCAA ATCTGAACAG chrX:16484735-16484855 75 2.74e-05 CCGCACCAGT GTTGCCAA CTAATGAACG chr2R:1515326-1515446 21 3.82e-05 atagacgcat gctgccac tcgcactctt chr2R:9973412-9973532 87 3.82e-05 CGGCTAATCC GCTGCCAC TGCCTGCCGG chr3R:8840451-8840571 73 6.17e-05 ATTGCACCGT GTTGCCAC TATCGCGTAA chr2L:6960088-6960208 88 6.17e-05 TATAGCACTG GTTGCCAC GCAGGGCCAG chr2R:6204432-6204552 40 6.17e-05 CGTCCATTCG GCTGCCAG CACTGCGACC chr3R:4462179-4462299 79 6.17e-05 CTGCCGCTGC GCTGCCAG TCAGGCCAGG chr3L:27390496-27390616 61 6.17e-05 CTTGCAACAC GTTGCCAC TTTAAGGTTG chr2L:10234780-10234900 61 6.17e-05 TAAACTCACA GCTGCCAG GAGAATGTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20242752-20242872 1.3e-05 66_[+4]_46 chr3L:20240288-20240408 1.3e-05 15_[+4]_97 chr2R:22420243-22420363 1.3e-05 26_[+4]_86 chr3R:16700859-16700979 1.3e-05 47_[+4]_65 chr2L:6246320-6246440 1.3e-05 58_[+4]_54 chr3L:6581923-6582043 1.3e-05 26_[+4]_86 chr3L:16679884-16680004 1.3e-05 14_[+4]_98 chr2L:6246528-6246648 2.7e-05 57_[+4]_55 chr3L:20293401-20293521 2.7e-05 104_[+4]_8 chr2R:14420056-14420176 2.7e-05 11_[+4]_101 chrX:20753426-20753546 2.7e-05 59_[+4]_53 chrX:16484735-16484855 2.7e-05 74_[+4]_38 chr2R:1515326-1515446 3.8e-05 20_[+4]_92 chr2R:9973412-9973532 3.8e-05 86_[+4]_26 chr3R:8840451-8840571 6.2e-05 72_[+4]_40 chr2L:6960088-6960208 6.2e-05 87_[+4]_25 chr2R:6204432-6204552 6.2e-05 39_[+4]_73 chr3R:4462179-4462299 6.2e-05 78_[+4]_34 chr3L:27390496-27390616 6.2e-05 60_[+4]_52 chr2L:10234780-10234900 6.2e-05 60_[+4]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYTGCCAA width=8 seqs=20 chr3L:20242752-20242872 ( 67) GCTGCCAA 1 chr3L:20240288-20240408 ( 16) GCTGCCAA 1 chr2R:22420243-22420363 ( 27) GCTGCCAA 1 chr3R:16700859-16700979 ( 48) GCTGCCAA 1 chr2L:6246320-6246440 ( 59) GCTGCCAA 1 chr3L:6581923-6582043 ( 27) GCTGCCAA 1 chr3L:16679884-16680004 ( 15) GCTGCCAA 1 chr2L:6246528-6246648 ( 58) GTTGCCAA 1 chr3L:20293401-20293521 ( 105) GTTGCCAA 1 chr2R:14420056-14420176 ( 12) GTTGCCAA 1 chrX:20753426-20753546 ( 60) GTTGCCAA 1 chrX:16484735-16484855 ( 75) GTTGCCAA 1 chr2R:1515326-1515446 ( 21) GCTGCCAC 1 chr2R:9973412-9973532 ( 87) GCTGCCAC 1 chr3R:8840451-8840571 ( 73) GTTGCCAC 1 chr2L:6960088-6960208 ( 88) GTTGCCAC 1 chr2R:6204432-6204552 ( 40) GCTGCCAG 1 chr3R:4462179-4462299 ( 79) GCTGCCAG 1 chr3L:27390496-27390616 ( 61) GTTGCCAC 1 chr2L:10234780-10234900 ( 61) GCTGCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4069 E= 5.6e+000 -1097 -1097 213 -1097 -1097 138 -1097 55 -1097 -1097 -1097 187 -1097 -1097 213 -1097 -1097 211 -1097 -1097 -1097 211 -1097 -1097 190 -1097 -1097 -1097 117 11 -60 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 5.6e+000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.250000 0.150000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAA MEME-4 regular expression -------------------------------------------------------------------------------- G[CT]TGCCA[AC] -------------------------------------------------------------------------------- Time 25.57 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGCTGC MEME-5 width = 8 sites = 5 llr = 57 E-value = 1.9e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C :a::a::a probability G a::a::a: matrix T :::::a:: bits 2.1 ** ** ** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.5 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCTGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:4973429-4973549 13 1.07e-05 TCATGTAAGC GCAGCTGC ATTACTCAAT chr2R:6204432-6204552 77 1.07e-05 TCCTGCGCAC GCAGCTGC TGTCCCACCT chr3L:25230062-25230182 44 1.07e-05 tagcactaat gcagctgc agccactaat chrX:15321137-15321257 39 1.07e-05 CAAAATGGTG GCAGCTGC GAGGTGGTTC chr3R:25893795-25893915 89 1.07e-05 TGGCACTGGT GCAGCTGC TGGAGTACCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:4973429-4973549 1.1e-05 12_[+5]_100 chr2R:6204432-6204552 1.1e-05 76_[+5]_36 chr3L:25230062-25230182 1.1e-05 43_[+5]_69 chrX:15321137-15321257 1.1e-05 38_[+5]_74 chr3R:25893795-25893915 1.1e-05 88_[+5]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGCTGC width=8 seqs=5 chr3R:4973429-4973549 ( 13) GCAGCTGC 1 chr2R:6204432-6204552 ( 77) GCAGCTGC 1 chr3L:25230062-25230182 ( 44) GCAGCTGC 1 chrX:15321137-15321257 ( 39) GCAGCTGC 1 chr3R:25893795-25893915 ( 89) GCAGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 1.9e+005 -897 -897 213 -897 -897 211 -897 -897 190 -897 -897 -897 -897 -897 213 -897 -897 211 -897 -897 -897 -897 -897 187 -897 -897 213 -897 -897 211 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.9e+005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-5 regular expression -------------------------------------------------------------------------------- GCAGCTGC -------------------------------------------------------------------------------- Time 31.10 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1758992-1759112 4.24e-01 120 chr3R:23145820-23145940 2.37e-01 120 chr2R:4377507-4377627 9.64e-01 120 chr3L:25844140-25844260 5.13e-01 120 chr3L:9142137-9142257 5.20e-01 120 chr2R:5071896-5072016 2.24e-01 120 chr2L:12754632-12754752 2.69e-01 120 chr3L:23592844-23592964 7.16e-02 34_[+2(1.52e-05)]_78 chr3R:3623535-3623655 1.28e-01 120 chr4:954474-954594 8.27e-02 120 chrX:5597696-5597816 6.97e-02 120 chr3R:25893795-25893915 2.49e-02 88_[+5(1.07e-05)]_24 chr3R:10957728-10957848 7.02e-02 44_[+1(1.45e-05)]_68 chr3R:3743339-3743459 5.87e-01 120 chrX:18977666-18977786 4.38e-02 120 chrX:22872741-22872861 3.74e-02 67_[+1(6.55e-05)]_45 chr2R:968643-968763 9.99e-01 120 chr3L:12491164-12491284 1.18e-01 120 chr3R:23406886-23407006 4.14e-02 93_[+1(3.16e-05)]_19 chrX:22258503-22258623 3.20e-01 36_[+1(9.84e-05)]_76 chr2L:23028659-23028779 8.59e-04 52_[+3(1.69e-05)]_60 chr3R:31984431-31984551 1.71e-01 9_[+1(1.45e-05)]_103 chr2L:15089982-15090102 2.09e-02 40_[+2(5.09e-05)]_72 chr3R:19340002-19340122 1.99e-02 120 chr2R:499375-499495 8.65e-01 120 chr3R:6840826-6840946 1.10e-01 87_[+2(6.63e-05)]_25 chr2R:18636637-18636757 6.71e-01 120 chr3L:27341680-27341800 6.08e-02 120 chr2R:5480184-5480304 6.00e-02 24_[+2(5.09e-05)]_88 chr2R:23987048-23987168 8.82e-02 120 chr3R:22581061-22581181 3.49e-01 120 chr3R:23879907-23880027 1.93e-01 25_[+3(4.59e-05)]_87 chr3R:30328614-30328734 1.62e-02 120 chrX:10788255-10788375 3.61e-01 120 chr3R:21429220-21429340 3.75e-02 120 chr3L:6192548-6192668 2.22e-02 31_[+2(5.09e-05)]_81 chr3L:21116269-21116389 3.19e-01 120 chr3R:14769404-14769524 4.31e-02 71_[+3(1.69e-05)]_41 chr3R:31476812-31476932 2.57e-03 32_[+4(8.72e-05)]_42_[+2(9.96e-05)]_\ 30 chr2R:20272126-20272246 1.16e-01 80_[+1(8.59e-05)]_32 chr2L:15311782-15311902 7.09e-02 120 chr3L:23214297-23214417 1.66e-02 64_[+3(1.69e-05)]_48 chr3R:29298857-29298977 2.70e-01 120 chr2R:13299212-13299332 7.90e-01 120 chr2R:5673145-5673265 1.57e-01 17_[+1(1.45e-05)]_95 chrX:15667405-15667525 1.89e-02 31_[+2(1.52e-05)]_7_[+2(1.52e-05)]_\ 66 chr2R:11402609-11402729 2.13e-01 51_[+1(9.84e-05)]_61 chr2L:1178008-1178128 7.90e-02 76_[+1(6.55e-05)]_36 chr3L:21323787-21323907 3.47e-02 81_[+1(3.16e-05)]_31 chr2R:6814420-6814540 9.35e-01 120 chr3L:24282372-24282492 3.98e-01 120 chr2R:14502341-14502461 8.05e-01 120 chr3R:30041821-30041941 7.86e-02 76_[+3(3.16e-05)]_36 chr2L:7590144-7590264 1.47e-02 120 chr3R:18722458-18722578 5.08e-01 120 chr3R:18080582-18080702 1.28e-01 120 chrX:9533876-9533996 5.31e-02 120 chr2R:5119270-5119390 5.20e-01 120 chr3R:21833243-21833363 4.77e-01 120 chr2R:6814216-6814336 3.12e-01 120 chr2R:11735712-11735832 1.23e-01 120 chr3R:6169773-6169893 8.20e-02 27_[+1(3.16e-05)]_85 chr2R:13002987-13003107 9.72e-04 17_[+5(6.84e-05)]_65_[+3(5.82e-05)]_\ 22 chr2L:10234780-10234900 5.23e-04 60_[+4(6.17e-05)]_13_[+3(3.16e-05)]_\ 31 chr3L:27390496-27390616 2.86e-02 60_[+4(6.17e-05)]_52 chr2L:199664-199784 3.33e-01 120 chr3L:23328958-23329078 2.13e-01 120 chr3L:22725559-22725679 9.29e-01 120 chr2R:13197643-13197763 6.72e-01 120 chr3R:2167606-2167726 2.38e-01 120 chr2R:16149535-16149655 5.51e-01 120 chr2L:10998675-10998795 2.02e-01 120 chr4:923505-923625 3.50e-01 120 chr3L:3091604-3091724 8.44e-01 120 chr2R:24915422-24915542 6.32e-01 120 chr3L:16679884-16680004 4.39e-03 14_[+4(1.25e-05)]_98 chr3R:4462179-4462299 4.70e-04 60_[+2(9.96e-05)]_2_[+5(6.84e-05)]_\ [+4(6.17e-05)]_34 chr2R:4396621-4396741 2.94e-01 120 chr2L:13591545-13591665 4.16e-07 44_[+5(1.07e-05)]_8_[+1(1.45e-05)]_\ 13_[+2(1.52e-05)]_3_[+5(6.84e-05)]_20 chr3R:4821739-4821859 9.81e-01 120 chr3L:14434376-14434496 4.67e-02 41_[+3(9.01e-05)]_71 chr2L:3854475-3854595 1.41e-01 120 chrX:10360293-10360413 3.95e-01 120 chr2L:14440506-14440626 2.59e-05 2_[+1(8.59e-05)]_95_[+2(5.09e-05)]_\ 7 chr3R:18549674-18549794 3.43e-01 120 chrX:5756555-5756675 2.29e-01 120 chr2R:3908504-3908624 4.71e-01 71_[+2(9.96e-05)]_41 chr2R:5192524-5192644 1.33e-01 120 chr2L:22746645-22746765 3.61e-01 120 chr3R:30719065-30719185 6.57e-01 120 chr2R:9973412-9973532 3.38e-04 86_[+4(3.82e-05)]_26 chr3R:4634451-4634571 1.17e-01 120 chr2R:5061934-5062054 5.12e-01 120 chr3L:5015107-5015227 6.29e-02 120 chr2R:18517445-18517565 2.20e-02 53_[+3(1.69e-05)]_59 chr3R:6010153-6010273 2.89e-01 120 chr3R:8367602-8367722 6.44e-03 65_[+5(6.84e-05)]_7_[+5(6.84e-05)]_\ 32 chrX:15484527-15484647 3.30e-01 120 chrX:15321137-15321257 1.56e-04 38_[+5(1.07e-05)]_24_[+1(1.45e-05)]_\ 32_[+5(6.84e-05)]_2 chrX:19528330-19528450 1.98e-01 120 chr2L:5422490-5422610 2.57e-02 90_[+5(6.84e-05)]_22 chr3R:4821940-4822060 9.47e-01 120 chr2R:18655209-18655329 4.75e-01 120 chr3L:176797-176917 7.43e-01 120 chr3L:15700836-15700956 7.12e-01 120 chrX:17591266-17591386 7.17e-01 120 chrX:1824018-1824138 9.89e-01 120 chrX:16484735-16484855 1.58e-02 74_[+4(2.74e-05)]_38 chr3R:4833511-4833631 1.95e-01 120 chr3R:18901780-18901900 4.50e-03 34_[+3(1.69e-05)]_78 chr3L:11165182-11165302 2.51e-02 60_[+1(8.59e-05)]_52 chr3R:21437063-21437183 5.27e-01 120 chr3R:21237426-21237546 1.41e-01 120 chr3L:6581923-6582043 7.84e-04 26_[+4(1.25e-05)]_77_[+3(5.82e-05)]_\ 1 chr3L:15143386-15143506 8.14e-01 120 chr3L:16314872-16314992 6.08e-01 120 chr4:1127142-1127262 9.79e-02 8_[+1(8.59e-05)]_104 chr2L:22636355-22636475 2.02e-02 120 chr3L:22094605-22094725 5.32e-01 120 chr3R:8149957-8150077 4.38e-02 20_[+1(3.16e-05)]_92 chr2R:13339305-13339425 5.99e-03 78_[+3(1.69e-05)]_34 chr3R:17681939-17682059 1.01e-01 60_[+1(8.59e-05)]_52 chrX:8643655-8643775 7.90e-01 120 chr3L:26818932-26819052 5.94e-01 120 chr2L:16323774-16323894 4.89e-02 53_[+2(1.52e-05)]_59 chr2L:6246320-6246440 2.42e-03 17_[+1(1.45e-05)]_33_[+4(1.25e-05)]_\ 54 chr2R:19660077-19660197 2.89e-01 120 chr2R:1725262-1725382 8.61e-01 120 chr3R:31872731-31872851 1.95e-02 120 chr2L:19231456-19231576 8.00e-02 120 chrX:17492277-17492397 1.57e-01 120 chr3L:16799627-16799747 1.04e-04 45_[+4(3.82e-05)]_67 chrX:20753426-20753546 2.46e-02 59_[+4(2.74e-05)]_53 chr2L:10230527-10230647 3.38e-02 89_[+1(6.55e-05)]_23 chrX:14232854-14232974 5.06e-01 120 chr3R:16700859-16700979 1.73e-02 47_[+4(1.25e-05)]_65 chr2R:22420243-22420363 1.20e-02 26_[+4(1.25e-05)]_86 chrX:186041-186161 4.98e-01 120 chr3R:15392158-15392278 1.07e-01 86_[+1(3.16e-05)]_26 chrX:7407284-7407404 1.33e-01 120 chrX:115703-115823 3.45e-01 120 chr2L:7303555-7303675 1.91e-01 120 chrX:54294-54414 5.39e-02 120 chr2R:5673350-5673470 5.71e-01 120 chrX:8056212-8056332 2.83e-01 102_[+1(3.16e-05)]_10 chr3R:11592396-11592516 2.26e-04 60_[+3(5.82e-05)]_[+2(1.52e-05)]_44 chr2L:19869596-19869716 5.66e-03 64_[+2(1.52e-05)]_48 chr3L:4363551-4363671 1.79e-01 120 chr3R:12696783-12696903 2.52e-03 33_[+2(5.09e-05)]_60_[+5(6.84e-05)]_\ 11 chr3L:11562900-11563020 6.55e-02 44_[+1(1.45e-05)]_68 chr3L:3070293-3070413 1.62e-01 120 chr3L:25230062-25230182 1.45e-03 43_[+5(1.07e-05)]_69 chr3L:25847162-25847282 4.02e-01 120 chr3R:17111529-17111649 3.22e-01 120 chr2R:4448927-4449047 9.86e-01 120 chr3R:11448081-11448201 2.91e-01 120 chrX:22373575-22373695 6.33e-01 120 chr3L:19044321-19044441 2.57e-01 120 chr2R:25200121-25200241 1.27e-01 120 chr2R:25204880-25205000 1.46e-04 21_[+1(6.55e-05)]_2_[+3(4.59e-05)]_\ 38_[+2(1.52e-05)]_35 chrX:18657972-18658092 5.71e-01 120 chr3L:11533144-11533264 8.49e-02 32_[+1(1.45e-05)]_80 chr3L:20240288-20240408 1.10e-03 15_[+4(1.25e-05)]_19_[+4(3.82e-05)]_\ 70 chr3L:23214496-23214616 9.31e-02 120 chr3L:16651993-16652113 6.66e-02 120 chr2R:5108961-5109081 9.62e-01 120 chr2R:14420056-14420176 1.15e-02 11_[+4(2.74e-05)]_101 chr2R:12565019-12565139 5.12e-01 120 chr2L:14285139-14285259 5.70e-01 120 chr2R:6204432-6204552 6.49e-03 39_[+4(6.17e-05)]_29_[+5(1.07e-05)]_\ 36 chr3L:21490471-21490591 3.98e-01 120 chr2R:21684761-21684881 2.24e-01 120 chr2R:24113476-24113596 4.89e-01 120 chr2R:11379777-11379897 8.03e-01 120 chr2R:7961904-7962024 3.26e-01 120 chr2R:2094925-2095045 5.48e-01 120 chr2R:12776788-12776908 9.45e-02 100_[+1(6.55e-05)]_12 chr3L:14220750-14220870 2.30e-01 120 chrX:18688961-18689081 1.88e-01 14_[+1(8.59e-05)]_98 chr3L:14801874-14801994 8.18e-01 120 chr2R:1514040-1514160 5.46e-01 120 chr2L:6960088-6960208 4.98e-02 87_[+4(6.17e-05)]_25 chr2L:11651077-11651197 4.10e-02 69_[+1(3.16e-05)]_43 chr3R:8840451-8840571 5.84e-04 55_[+1(1.45e-05)]_9_[+4(6.17e-05)]_\ 40 chr3L:20293662-20293782 5.35e-01 120 chr3R:20635010-20635130 2.75e-01 120 chr3R:12381811-12381931 8.84e-01 120 chr4:1062995-1063115 3.19e-02 120 chr3L:11554971-11555091 4.45e-01 120 chrX:2261426-2261546 3.32e-01 120 chr3R:7472314-7472434 9.22e-01 120 chr3R:30718862-30718982 1.80e-01 120 chr3L:3339282-3339402 2.13e-01 120 chr2L:6392543-6392663 1.70e-04 2_[+4(8.72e-05)]_35_[+1(1.45e-05)]_\ 67 chr2R:7635550-7635670 4.24e-01 120 chr3L:20242752-20242872 5.76e-03 66_[+4(1.25e-05)]_46 chr3L:20293401-20293521 5.17e-02 104_[+4(2.74e-05)]_8 chr3R:8277605-8277725 5.74e-02 33_[+2(6.63e-05)]_79 chr3R:8367804-8367924 1.20e-01 70_[+5(6.84e-05)]_10_[+5(6.84e-05)]_\ 4_[+5(6.84e-05)]_12 chr2R:15037957-15038077 3.51e-02 120 chr2L:10344394-10344514 6.56e-03 7_[+2(6.63e-05)]_46_[+1(3.16e-05)]_\ 51 chr2R:18850277-18850397 3.91e-01 120 chr2R:1515326-1515446 2.48e-03 20_[+4(3.82e-05)]_13_[+1(9.84e-05)]_\ 71 chr2L:16657268-16657388 7.62e-01 120 chr3R:18738211-18738331 6.06e-01 120 chr2L:20981606-20981726 1.42e-01 120 chr3R:19792172-19792292 7.40e-02 120 chrX:16415081-16415201 1.54e-03 51_[+3(3.16e-05)]_34_[+3(1.69e-05)]_\ 19 chr2L:3822187-3822307 3.34e-03 120 chr2R:7805378-7805498 2.16e-01 120 chr4:491088-491208 3.15e-01 28_[+2(9.96e-05)]_84 chr3L:26646587-26646707 9.35e-01 120 chr3R:10863728-10863848 4.56e-02 120 chr3L:27089069-27089189 6.04e-01 120 chr3R:16261696-16261816 1.48e-02 20_[+2(1.52e-05)]_92 chr3L:12694660-12694780 3.61e-02 120 chrX:18657771-18657891 1.53e-02 25_[+3(1.69e-05)]_87 chr3L:22094808-22094928 9.44e-01 120 chr2L:10334119-10334239 2.96e-01 120 chr3L:20405695-20405815 3.96e-02 38_[+3(3.16e-05)]_74 chr2R:6200966-6201086 4.46e-01 120 chr2R:17572952-17573072 5.64e-01 120 chr2R:8083206-8083326 7.06e-03 56_[+3(9.01e-05)]_56 chr2L:15478227-15478347 2.47e-02 97_[+2(1.52e-05)]_15 chr3R:27931677-27931797 2.02e-02 45_[+2(9.96e-05)]_67 chr2R:5682607-5682727 6.36e-01 120 chr2L:6246528-6246648 1.00e-01 57_[+4(2.74e-05)]_55 chr3L:20491642-20491762 3.45e-02 71_[+3(1.69e-05)]_41 chr2R:15291656-15291776 4.78e-03 62_[+2(5.09e-05)]_50 chr3R:10635889-10636009 1.93e-01 30_[+1(8.59e-05)]_82 chr2L:12028952-12029072 8.42e-01 120 chr3L:1741744-1741864 1.11e-01 120 chr3L:11693156-11693276 7.62e-01 120 chr3R:4973630-4973750 2.58e-01 120 chr3R:5404101-5404221 7.16e-01 120 chr3R:11391196-11391316 9.94e-01 120 chr2R:19390261-19390381 3.19e-02 120 chr3R:22134794-22134914 9.54e-03 120 chr3L:16580202-16580322 1.44e-02 108_[+3(5.82e-05)]_4 chr3R:13648439-13648559 6.01e-02 75_[+2(5.09e-05)]_37 chr2R:24965372-24965492 2.86e-01 19_[+1(8.59e-05)]_93 chr3L:11165395-11165515 1.70e-01 120 chr2R:17573159-17573279 5.34e-01 120 chr4:466802-466922 6.52e-02 77_[+3(1.69e-05)]_35 chr2R:4702804-4702924 4.69e-02 120 chr3R:4973429-4973549 1.59e-04 12_[+5(1.07e-05)]_32_[+2(3.31e-05)]_\ 60 chr2L:294466-294586 2.58e-01 120 chr3R:7093391-7093511 5.52e-01 120 chr2R:10821457-10821577 4.63e-01 120 chr2R:7477178-7477298 1.17e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************