******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/N.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:58972-59092 1.0000 120 chrX:6283326-6283446 1.0000 120 chr4:1306485-1306605 1.0000 120 chr2L:20290822-20290942 1.0000 120 chr3L:20183859-20183979 1.0000 120 chr3R:30529066-30529186 1.0000 120 chr3R:30898738-30898858 1.0000 120 chr2L:14197311-14197431 1.0000 120 chr3L:4541209-4541329 1.0000 120 chr2R:23351104-23351224 1.0000 120 chr2R:19467822-19467942 1.0000 120 chr3R:5611606-5611726 1.0000 120 chrX:21350988-21351108 1.0000 120 chrX:6843404-6843524 1.0000 120 chrX:17262238-17262358 1.0000 120 chr2R:17114889-17115009 1.0000 120 chr2L:2700371-2700491 1.0000 120 chr2L:1198535-1198655 1.0000 120 chr3R:22338720-22338840 1.0000 120 chr3R:25407237-25407357 1.0000 120 chrX:18772125-18772245 1.0000 120 chrX:4658040-4658160 1.0000 120 chr2L:6086803-6086923 1.0000 120 chr2L:13489270-13489390 1.0000 120 chrX:7923217-7923337 1.0000 120 chrX:1196369-1196489 1.0000 120 chrX:12478534-12478654 1.0000 120 chr3L:18957168-18957288 1.0000 120 chrX:14862608-14862728 1.0000 120 chrX:21632937-21633057 1.0000 120 chr2L:1678318-1678438 1.0000 120 chr3L:4449185-4449305 1.0000 120 chrX:494791-494911 1.0000 120 chr3L:15809965-15810085 1.0000 120 chr2R:23671823-23671943 1.0000 120 chrX:19310242-19310362 1.0000 120 chr2R:18638771-18638891 1.0000 120 chr2R:7232736-7232856 1.0000 120 chrX:3649773-3649893 1.0000 120 chr2R:11252255-11252375 1.0000 120 chr2L:18513571-18513691 1.0000 120 chr3R:27071895-27072015 1.0000 120 chr3R:6210294-6210414 1.0000 120 chr2L:8974689-8974809 1.0000 120 chrX:17076928-17077048 1.0000 120 chr3R:23306881-23307001 1.0000 120 chr3R:17717701-17717821 1.0000 120 chr3L:15516566-15516686 1.0000 120 chr3L:26013744-26013864 1.0000 120 chr3R:20506515-20506635 1.0000 120 chr2R:16103733-16103853 1.0000 120 chrX:3154800-3154920 1.0000 120 chr3L:968292-968412 1.0000 120 chr3R:20675864-20675984 1.0000 120 chr3R:9327937-9328057 1.0000 120 chr3L:1926639-1926759 1.0000 120 chr2L:3762877-3762997 1.0000 120 chr2R:4546030-4546150 1.0000 120 chrX:7285588-7285708 1.0000 120 chrX:16334351-16334471 1.0000 120 chr2L:3131780-3131900 1.0000 120 chrX:10841030-10841150 1.0000 120 chr2R:4013456-4013576 1.0000 120 chrX:13257835-13257955 1.0000 120 chr2R:23980035-23980155 1.0000 120 chr2R:17802473-17802593 1.0000 120 chr3R:16611385-16611505 1.0000 120 chr4:206439-206559 1.0000 120 chr3R:10108498-10108618 1.0000 120 chr3L:9340993-9341113 1.0000 120 chrX:13304023-13304143 1.0000 120 chr4:209399-209519 1.0000 120 chr3L:1191677-1191797 1.0000 120 chr3L:22346695-22346815 1.0000 120 chr3L:4426789-4426909 1.0000 120 chr2R:23748268-23748388 1.0000 120 chr3R:23004312-23004432 1.0000 120 chr2R:1071545-1071665 1.0000 120 chr3R:19929109-19929229 1.0000 120 chr2L:12341790-12341910 1.0000 120 chr2R:7889476-7889596 1.0000 120 chr2R:22684386-22684506 1.0000 120 chr2L:1049528-1049648 1.0000 120 chr2L:11475099-11475219 1.0000 120 chr2R:24694073-24694193 1.0000 120 chrX:14772144-14772264 1.0000 120 chr2R:11264021-11264141 1.0000 120 chrX:20434059-20434179 1.0000 120 chr3R:22751245-22751365 1.0000 120 chr3R:27301461-27301581 1.0000 120 chr3L:22456061-22456181 1.0000 120 chr3L:7815825-7815945 1.0000 120 chrX:5895718-5895838 1.0000 120 chr2L:3341320-3341440 1.0000 120 chr4:415651-415771 1.0000 120 chr2R:22993182-22993302 1.0000 120 chr3R:30486062-30486182 1.0000 120 chr2R:24427602-24427722 1.0000 120 chr2R:21547173-21547293 1.0000 120 chr3L:21930366-21930486 1.0000 120 chr3R:4717178-4717298 1.0000 120 chr3R:21126866-21126986 1.0000 120 chrX:5766876-5766996 1.0000 120 chr3L:21359932-21360052 1.0000 120 chrX:16637099-16637219 1.0000 120 chrX:1315908-1316028 1.0000 120 chr3R:11452175-11452295 1.0000 120 chrX:22443204-22443324 1.0000 120 chr2R:10424140-10424260 1.0000 120 chrX:8399163-8399283 1.0000 120 chr2R:24857325-24857445 1.0000 120 chrX:9202772-9202892 1.0000 120 chr2R:13304198-13304318 1.0000 120 chr3R:20781723-20781843 1.0000 120 chrX:21083373-21083493 1.0000 120 chr3L:2636159-2636279 1.0000 120 chr3R:13259251-13259371 1.0000 120 chr3R:8126955-8127075 1.0000 120 chr3R:26957305-26957425 1.0000 120 chr3R:4812921-4813041 1.0000 120 chr3R:19638815-19638935 1.0000 120 chr3R:6149750-6149870 1.0000 120 chr2L:3889734-3889854 1.0000 120 chr2R:7806893-7807013 1.0000 120 chr3R:12652839-12652959 1.0000 120 chr2L:17472582-17472702 1.0000 120 chr3R:11568633-11568753 1.0000 120 chr3L:1926302-1926422 1.0000 120 chr2L:313538-313658 1.0000 120 chr2R:19776469-19776589 1.0000 120 chr3L:8071860-8071980 1.0000 120 chrX:21351395-21351515 1.0000 120 chrX:6660039-6660159 1.0000 120 chr2R:8137749-8137869 1.0000 120 chr3R:27057978-27058098 1.0000 120 chr3L:12008081-12008201 1.0000 120 chr3L:1839543-1839663 1.0000 120 chr2R:18553697-18553817 1.0000 120 chr3R:13379352-13379472 1.0000 120 chrM:5711-5831 1.0000 120 chr2R:22287411-22287531 1.0000 120 chr4:941512-941632 1.0000 120 chr2R:13953711-13953831 1.0000 120 chr3L:8329161-8329281 1.0000 120 chr3R:21256433-21256553 1.0000 120 chr2R:10271853-10271973 1.0000 120 chr4:467091-467211 1.0000 120 chr3L:17739786-17739906 1.0000 120 chr3L:8787352-8787472 1.0000 120 chrX:1613224-1613344 1.0000 120 chr3L:4484892-4485012 1.0000 120 chr4:1318936-1319056 1.0000 120 chr3R:6286713-6286833 1.0000 120 chr3R:12628327-12628447 1.0000 120 chr2R:16579546-16579666 1.0000 120 chr3L:4840708-4840828 1.0000 120 chr2L:5292002-5292122 1.0000 120 chr3L:10644822-10644942 1.0000 120 chrX:1056703-1056823 1.0000 120 chr3R:29749551-29749671 1.0000 120 chr3R:5594917-5595037 1.0000 120 chr3L:17898730-17898850 1.0000 120 chr2L:9120607-9120727 1.0000 120 chr2L:138312-138432 1.0000 120 chrM:8047-8167 1.0000 120 chr2R:7098334-7098454 1.0000 120 chr3L:16875619-16875739 1.0000 120 chr2R:13580851-13580971 1.0000 120 chrX:18520498-18520618 1.0000 120 chr3R:20306010-20306130 1.0000 120 chr2R:11379725-11379845 1.0000 120 chr2L:6717095-6717215 1.0000 120 chr2L:5004215-5004335 1.0000 120 chr3R:5268607-5268727 1.0000 120 chrX:20251774-20251894 1.0000 120 chr3L:7143406-7143526 1.0000 120 chr2L:19399451-19399571 1.0000 120 chr3R:25495186-25495306 1.0000 120 chr3L:1850683-1850803 1.0000 120 chr2R:19941723-19941843 1.0000 120 chr3L:21498704-21498824 1.0000 120 chrX:16586697-16586817 1.0000 120 chrX:9675040-9675160 1.0000 120 chr3L:16470213-16470333 1.0000 120 chr2L:18455862-18455982 1.0000 120 chrX:15933791-15933911 1.0000 120 chrX:4214498-4214618 1.0000 120 chr3L:20221050-20221170 1.0000 120 chr2L:10260112-10260232 1.0000 120 chrX:19579039-19579159 1.0000 120 chr3L:505770-505890 1.0000 120 chr2L:548208-548328 1.0000 120 chr3R:18249376-18249496 1.0000 120 chr2R:24757151-24757271 1.0000 120 chr2R:13403797-13403917 1.0000 120 chrX:2645657-2645777 1.0000 120 chr2R:17871441-17871561 1.0000 120 chr2R:7063067-7063187 1.0000 120 chr2R:18372634-18372754 1.0000 120 chr2R:15781239-15781359 1.0000 120 chr3R:13360238-13360358 1.0000 120 chr2R:20230947-20231067 1.0000 120 chrX:19637961-19638081 1.0000 120 chr3R:21223949-21224069 1.0000 120 chr3L:1350005-1350125 1.0000 120 chrX:9110065-9110185 1.0000 120 chr3R:14823072-14823192 1.0000 120 chr3R:15688557-15688677 1.0000 120 chr3L:16335008-16335128 1.0000 120 chr3L:5534436-5534556 1.0000 120 chr3R:18507864-18507984 1.0000 120 chr2L:18298122-18298242 1.0000 120 chrX:2643187-2643307 1.0000 120 chr3R:7200010-7200130 1.0000 120 chr2R:21199566-21199686 1.0000 120 chr3R:25754060-25754180 1.0000 120 chr2L:8366354-8366474 1.0000 120 chr3L:18949245-18949365 1.0000 120 chr2R:21298714-21298834 1.0000 120 chr2L:7423977-7424097 1.0000 120 chrX:17077387-17077507 1.0000 120 chr3L:9455717-9455837 1.0000 120 chrX:11872780-11872900 1.0000 120 chr2R:17470007-17470127 1.0000 120 chr3R:24876051-24876171 1.0000 120 chrX:18137407-18137527 1.0000 120 chr3L:13454854-13454974 1.0000 120 chr2L:23174694-23174814 1.0000 120 chr3L:16291831-16291951 1.0000 120 chrX:19522557-19522677 1.0000 120 chr2R:2848497-2848617 1.0000 120 chrX:19578353-19578473 1.0000 120 chr3R:17615191-17615311 1.0000 120 chr3R:18798861-18798981 1.0000 120 chr3R:20154811-20154931 1.0000 120 chr4:467438-467558 1.0000 120 chr3R:5648048-5648168 1.0000 120 chr2R:7139742-7139862 1.0000 120 chrX:11147676-11147796 1.0000 120 chr3L:9497626-9497746 1.0000 120 chr3L:626372-626492 1.0000 120 chr2L:1644495-1644615 1.0000 120 chrX:617253-617373 1.0000 120 chr2L:2955789-2955909 1.0000 120 chrX:23097206-23097326 1.0000 120 chr3L:25108842-25108962 1.0000 120 chrM:9495-9615 1.0000 120 chr2R:16689554-16689674 1.0000 120 chr3L:4219444-4219564 1.0000 120 chrX:13134961-13135081 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_N/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/N.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.292 C 0.214 G 0.211 T 0.283 Background letter frequencies (from file dataset with add-one prior applied): A 0.292 C 0.214 G 0.211 T 0.283 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAGTATGC MEME-1 width = 8 sites = 74 llr = 636 E-value = 4.3e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGTATGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 99119::: pos.-specific C :::::::a probability G :19::2a: matrix T :::9:8:: bits 2.2 * 2.0 ** 1.8 * ** 1.6 ** ** Relative 1.3 *** * ** Entropy 1.1 ******** (12.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAGTATGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:4219444-4219564 18 1.90e-05 AATGGCCTAA AAGTATGC ACCACAATTG chr3R:20154811-20154931 4 1.90e-05 TGA AAGTATGC AAGCCATTTG chr2R:21298714-21298834 25 1.90e-05 CCAATCCCGA AAGTATGC TGTCTTTCAA chr3R:25754060-25754180 42 1.90e-05 GACCGCCTGG AAGTATGC AATCAAAAAC chr2R:21199566-21199686 98 1.90e-05 CACGGCCAAC AAGTATGC AATGGTTTTA chr2R:20230947-20231067 38 1.90e-05 GTTATCCTAA AAGTATGC AACGCAAAGA chr3R:13360238-13360358 57 1.90e-05 GCGTGCCCGA AAGTATGC AACAAAAATC chr2R:15781239-15781359 78 1.90e-05 CGCAGCCCGA AAGTATGC TCCACTAAGT chr2R:13403797-13403917 21 1.90e-05 TGCAGCTGCC AAGTATGC AACAGTTTTC chr2R:24757151-24757271 74 1.90e-05 TTGAGCCGGA AAGTATGC TTCTGTTTTG chr3L:20221050-20221170 75 1.90e-05 ATTCGCCCAT AAGTATGC AATGACATTT chr2R:19941723-19941843 81 1.90e-05 CGCCGCCCGA AAGTATGC TTTGAGATTT chr3L:7143406-7143526 73 1.90e-05 TTCAGACGAA AAGTATGC AGCATTGAAA chr2L:6717095-6717215 103 1.90e-05 AAATGCCCAA AAGTATGC AGTGACTTAA chr2R:11379725-11379845 76 1.90e-05 AGACGCCCAG AAGTATGC CACAGTCTTT chrX:18520498-18520618 53 1.90e-05 CGTTGCCTGA AAGTATGC TCCATAATCC chr2R:13580851-13580971 30 1.90e-05 CAACACCCGA AAGTATGC TATAAGTACG chr2L:9120607-9120727 79 1.90e-05 GGCCACTTAA AAGTATGC TATGAAAATT chrX:1056703-1056823 39 1.90e-05 GGGTGCATCT AAGTATGC AACCAAACAT chr3L:4840708-4840828 73 1.90e-05 TGTAGCCACG AAGTATGC AGCATTTCCC chr2L:313538-313658 41 1.90e-05 ATGTGCCTAA AAGTATGC TTTGGGGTCT chr3R:11568633-11568753 34 1.90e-05 TAAAGCCCGA AAGTATGC AGCACAAAAT chr3R:6149750-6149870 23 1.90e-05 GTCCGCCAAA AAGTATGC AACGCAATCA chr3R:13259251-13259371 68 1.90e-05 TTGCGCCGCA AAGTATGC ACCACAATTG chr3R:11452175-11452295 94 1.90e-05 ATCAGCCGAA AAGTATGC CAAATTGAAC chr3L:7815825-7815945 80 1.90e-05 TTGCGCTCGG AAGTATGC TACGTTAAAG chrX:20434059-20434179 52 1.90e-05 AGCAGCCGAA AAGTATGC AGCAAAAATG chrX:14772144-14772264 41 1.90e-05 CAGCGCTCTA AAGTATGC TACGTCGTGC chr2R:24694073-24694193 67 1.90e-05 TGGCGCCAAA AAGTATGC AAATATATAC chr2L:12341790-12341910 104 1.90e-05 TGAGCTACAA AAGTATGC AGCAAGGGC chr3L:1191677-1191797 25 1.90e-05 ATCCAGCTAA AAGTATGC CTTCTATGCA chr2L:3762877-3762997 30 1.90e-05 ATCTGCCCAA AAGTATGC ATTGGATATA chr2R:23671823-23671943 38 1.90e-05 GACAGCCCCC AAGTATGC AGCGCCTGCG chrX:18772125-18772245 29 1.90e-05 TGGGGGCCAA AAGTATGC AGCGATATTG chrX:17262238-17262358 79 1.90e-05 GCAAGCTGAA AAGTATGC AATATTTTTT chr2R:23351104-23351224 33 1.90e-05 GTGTTTTTTA AAGTATGC AACCACTTGT chr3R:7200010-7200130 77 3.32e-05 TTGCTCACCA AAGTAGGC AACAATTTAG chr3R:18507864-18507984 64 3.32e-05 CGCCGCACAA AAGTAGGC AGCAGATTTT chr3L:16470213-16470333 1 3.32e-05 . AAGTAGGC AATATTCTTG chr3L:16875619-16875739 97 3.32e-05 TTGAGCCTAA AAGTAGGC AATTGTGCAA chr3L:968292-968412 79 3.32e-05 ATATGCCTTA AAGTAGGC ACTTATAAGT chr2L:19399451-19399571 77 5.28e-05 TTGCCCCAAT AAGAATGC CTTTGTATGC chr3R:19638815-19638935 33 5.28e-05 TAAGGCCTAA AAGAATGC TATAATTTTG chr3R:19929109-19929229 63 5.28e-05 GAGCACCTAA AAGAATGC AAAACAAATA chr3L:505770-505890 74 7.91e-05 CCGACCCTCA AAATATGC AACATAAAAG chr3L:8071860-8071980 21 7.91e-05 GCCTGGAAAT AAATATGC GCCTGGAAGA chrX:4658040-4658160 45 7.91e-05 TCATACCACA AAATATGC TATGAAAACC chr2L:1198535-1198655 35 7.91e-05 GAAAGCCCAA AAATATGC TATATACAAT chr3R:30898738-30898858 37 7.91e-05 GTCAGCCTGA AAATATGC AATTTACTAC chr3R:5268607-5268727 96 9.28e-05 TTTTGCCTGT AGGTATGC TAGAATTTAA chr3L:12008081-12008201 106 1.21e-04 CTACCCCCAA AAGTCTGC ATCGAAT chr3L:15809965-15810085 66 1.21e-04 ATCATCCAAA AAGCATGC CCCACAATAG chr2L:1644495-1644615 67 1.36e-04 CGGCAGAGAT AAGAAGGC CAGAACGAGA chrX:2643187-2643307 44 1.36e-04 AAACTAAGCC AAGAAGGC AAAAACGAAA chr3R:14823072-14823192 3 1.36e-04 TG AAGAAGGC GAAAATTGAT chr3R:18798861-18798981 68 1.63e-04 CTTCGCCCAA AAGTGTGC TATATTTGGT chrX:4214498-4214618 39 1.63e-04 CGCCGCCCGT GAGTATGC AATAAATTAT chr2R:11252255-11252375 68 1.83e-04 CACCACCGAA AAATAGGC TACAATATGC chr3L:4449185-4449305 73 1.83e-04 TTTTGACGAA AAATAGGC TACACTAATT chrX:19522557-19522677 77 1.93e-04 CCAGAGTACC AGGTAGGC GTCCTCCGAG chr3L:17898730-17898850 79 1.93e-04 GAAACCCTAA AGGTAGGC TTCATAAATG chr2R:16689554-16689674 27 2.14e-04 GCCGGCCAAA AAGCAGGC AACACACTGC chr3L:5534436-5534556 8 2.14e-04 AGTCGAA AAGTCGGC AACGCGATGC chr3R:13379352-13379472 24 2.14e-04 GAACGCCAAG AAGCAGGC AACACAAAAT chr2R:19467822-19467942 70 2.14e-04 AGCAGTGAAA AAGTCGGC TCAATTGTCT chr3R:17615191-17615311 34 2.53e-04 TGATCCCAAC AAGTATGT TACACTTTTT chr2L:3889734-3889854 108 2.53e-04 GAATATGTTT AAGTATGT TTCGT chr2R:4013456-4013576 69 2.53e-04 CTTAGCATTG CAGTATGC ATATTACTGT chr3L:16291831-16291951 96 2.74e-04 AGTCGCCCAA AAGTGGGC AAACGTGTGC chr3L:22456061-22456181 8 2.74e-04 GGCCTTA GAGTAGGC TATTAGTTCT chr3R:25407237-25407357 16 2.92e-04 TGCAGGTTAT TAGTATGC ACAGCTTGCT chrX:11147676-11147796 20 3.19e-04 GCCAAAAAAT AAAAATGC CGACATACAA chr3R:21223949-21224069 45 3.60e-04 CGCAACATCA AGGAATGC TTCCCCGATC chr2L:138312-138432 32 3.60e-04 CCTGTTGGTA AAGTATAC TACACTGATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:4219444-4219564 1.9e-05 17_[+1]_95 chr3R:20154811-20154931 1.9e-05 3_[+1]_109 chr2R:21298714-21298834 1.9e-05 24_[+1]_88 chr3R:25754060-25754180 1.9e-05 41_[+1]_71 chr2R:21199566-21199686 1.9e-05 97_[+1]_15 chr2R:20230947-20231067 1.9e-05 37_[+1]_75 chr3R:13360238-13360358 1.9e-05 56_[+1]_56 chr2R:15781239-15781359 1.9e-05 77_[+1]_35 chr2R:13403797-13403917 1.9e-05 20_[+1]_92 chr2R:24757151-24757271 1.9e-05 73_[+1]_39 chr3L:20221050-20221170 1.9e-05 74_[+1]_38 chr2R:19941723-19941843 1.9e-05 80_[+1]_32 chr3L:7143406-7143526 1.9e-05 72_[+1]_40 chr2L:6717095-6717215 1.9e-05 102_[+1]_10 chr2R:11379725-11379845 1.9e-05 75_[+1]_37 chrX:18520498-18520618 1.9e-05 52_[+1]_60 chr2R:13580851-13580971 1.9e-05 29_[+1]_83 chr2L:9120607-9120727 1.9e-05 78_[+1]_34 chrX:1056703-1056823 1.9e-05 38_[+1]_74 chr3L:4840708-4840828 1.9e-05 72_[+1]_40 chr2L:313538-313658 1.9e-05 40_[+1]_72 chr3R:11568633-11568753 1.9e-05 33_[+1]_79 chr3R:6149750-6149870 1.9e-05 22_[+1]_90 chr3R:13259251-13259371 1.9e-05 67_[+1]_45 chr3R:11452175-11452295 1.9e-05 93_[+1]_19 chr3L:7815825-7815945 1.9e-05 79_[+1]_33 chrX:20434059-20434179 1.9e-05 51_[+1]_61 chrX:14772144-14772264 1.9e-05 40_[+1]_72 chr2R:24694073-24694193 1.9e-05 66_[+1]_46 chr2L:12341790-12341910 1.9e-05 103_[+1]_9 chr3L:1191677-1191797 1.9e-05 24_[+1]_88 chr2L:3762877-3762997 1.9e-05 29_[+1]_83 chr2R:23671823-23671943 1.9e-05 37_[+1]_75 chrX:18772125-18772245 1.9e-05 28_[+1]_84 chrX:17262238-17262358 1.9e-05 78_[+1]_34 chr2R:23351104-23351224 1.9e-05 32_[+1]_80 chr3R:7200010-7200130 3.3e-05 76_[+1]_36 chr3R:18507864-18507984 3.3e-05 63_[+1]_49 chr3L:16470213-16470333 3.3e-05 [+1]_112 chr3L:16875619-16875739 3.3e-05 96_[+1]_16 chr3L:968292-968412 3.3e-05 78_[+1]_34 chr2L:19399451-19399571 5.3e-05 76_[+1]_36 chr3R:19638815-19638935 5.3e-05 32_[+1]_80 chr3R:19929109-19929229 5.3e-05 62_[+1]_50 chr3L:505770-505890 7.9e-05 73_[+1]_39 chr3L:8071860-8071980 7.9e-05 20_[+1]_92 chrX:4658040-4658160 7.9e-05 44_[+1]_68 chr2L:1198535-1198655 7.9e-05 34_[+1]_78 chr3R:30898738-30898858 7.9e-05 36_[+1]_76 chr3R:5268607-5268727 9.3e-05 95_[+1]_17 chr3L:12008081-12008201 0.00012 105_[+1]_7 chr3L:15809965-15810085 0.00012 65_[+1]_47 chr2L:1644495-1644615 0.00014 66_[+1]_46 chrX:2643187-2643307 0.00014 43_[+1]_69 chr3R:14823072-14823192 0.00014 2_[+1]_110 chr3R:18798861-18798981 0.00016 67_[+1]_45 chrX:4214498-4214618 0.00016 38_[+1]_74 chr2R:11252255-11252375 0.00018 67_[+1]_45 chr3L:4449185-4449305 0.00018 72_[+1]_40 chrX:19522557-19522677 0.00019 76_[+1]_36 chr3L:17898730-17898850 0.00019 78_[+1]_34 chr2R:16689554-16689674 0.00021 26_[+1]_86 chr3L:5534436-5534556 0.00021 7_[+1]_105 chr3R:13379352-13379472 0.00021 23_[+1]_89 chr2R:19467822-19467942 0.00021 69_[+1]_43 chr3R:17615191-17615311 0.00025 33_[+1]_79 chr2L:3889734-3889854 0.00025 107_[+1]_5 chr2R:4013456-4013576 0.00025 68_[+1]_44 chr3L:16291831-16291951 0.00027 95_[+1]_17 chr3L:22456061-22456181 0.00027 7_[+1]_105 chr3R:25407237-25407357 0.00029 15_[+1]_97 chrX:11147676-11147796 0.00032 19_[+1]_93 chr3R:21223949-21224069 0.00036 44_[+1]_68 chr2L:138312-138432 0.00036 31_[+1]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGTATGC width=8 seqs=74 chr3L:4219444-4219564 ( 18) AAGTATGC 1 chr3R:20154811-20154931 ( 4) AAGTATGC 1 chr2R:21298714-21298834 ( 25) AAGTATGC 1 chr3R:25754060-25754180 ( 42) AAGTATGC 1 chr2R:21199566-21199686 ( 98) AAGTATGC 1 chr2R:20230947-20231067 ( 38) AAGTATGC 1 chr3R:13360238-13360358 ( 57) AAGTATGC 1 chr2R:15781239-15781359 ( 78) AAGTATGC 1 chr2R:13403797-13403917 ( 21) AAGTATGC 1 chr2R:24757151-24757271 ( 74) AAGTATGC 1 chr3L:20221050-20221170 ( 75) AAGTATGC 1 chr2R:19941723-19941843 ( 81) AAGTATGC 1 chr3L:7143406-7143526 ( 73) AAGTATGC 1 chr2L:6717095-6717215 ( 103) AAGTATGC 1 chr2R:11379725-11379845 ( 76) AAGTATGC 1 chrX:18520498-18520618 ( 53) AAGTATGC 1 chr2R:13580851-13580971 ( 30) AAGTATGC 1 chr2L:9120607-9120727 ( 79) AAGTATGC 1 chrX:1056703-1056823 ( 39) AAGTATGC 1 chr3L:4840708-4840828 ( 73) AAGTATGC 1 chr2L:313538-313658 ( 41) AAGTATGC 1 chr3R:11568633-11568753 ( 34) AAGTATGC 1 chr3R:6149750-6149870 ( 23) AAGTATGC 1 chr3R:13259251-13259371 ( 68) AAGTATGC 1 chr3R:11452175-11452295 ( 94) AAGTATGC 1 chr3L:7815825-7815945 ( 80) AAGTATGC 1 chrX:20434059-20434179 ( 52) AAGTATGC 1 chrX:14772144-14772264 ( 41) AAGTATGC 1 chr2R:24694073-24694193 ( 67) AAGTATGC 1 chr2L:12341790-12341910 ( 104) AAGTATGC 1 chr3L:1191677-1191797 ( 25) AAGTATGC 1 chr2L:3762877-3762997 ( 30) AAGTATGC 1 chr2R:23671823-23671943 ( 38) AAGTATGC 1 chrX:18772125-18772245 ( 29) AAGTATGC 1 chrX:17262238-17262358 ( 79) AAGTATGC 1 chr2R:23351104-23351224 ( 33) AAGTATGC 1 chr3R:7200010-7200130 ( 77) AAGTAGGC 1 chr3R:18507864-18507984 ( 64) AAGTAGGC 1 chr3L:16470213-16470333 ( 1) AAGTAGGC 1 chr3L:16875619-16875739 ( 97) AAGTAGGC 1 chr3L:968292-968412 ( 79) AAGTAGGC 1 chr2L:19399451-19399571 ( 77) AAGAATGC 1 chr3R:19638815-19638935 ( 33) AAGAATGC 1 chr3R:19929109-19929229 ( 63) AAGAATGC 1 chr3L:505770-505890 ( 74) AAATATGC 1 chr3L:8071860-8071980 ( 21) AAATATGC 1 chrX:4658040-4658160 ( 45) AAATATGC 1 chr2L:1198535-1198655 ( 35) AAATATGC 1 chr3R:30898738-30898858 ( 37) AAATATGC 1 chr3R:5268607-5268727 ( 96) AGGTATGC 1 chr3L:12008081-12008201 ( 106) AAGTCTGC 1 chr3L:15809965-15810085 ( 66) AAGCATGC 1 chr2L:1644495-1644615 ( 67) AAGAAGGC 1 chrX:2643187-2643307 ( 44) AAGAAGGC 1 chr3R:14823072-14823192 ( 3) AAGAAGGC 1 chr3R:18798861-18798981 ( 68) AAGTGTGC 1 chrX:4214498-4214618 ( 39) GAGTATGC 1 chr2R:11252255-11252375 ( 68) AAATAGGC 1 chr3L:4449185-4449305 ( 73) AAATAGGC 1 chrX:19522557-19522677 ( 77) AGGTAGGC 1 chr3L:17898730-17898850 ( 79) AGGTAGGC 1 chr2R:16689554-16689674 ( 27) AAGCAGGC 1 chr3L:5534436-5534556 ( 8) AAGTCGGC 1 chr3R:13379352-13379472 ( 24) AAGCAGGC 1 chr2R:19467822-19467942 ( 70) AAGTCGGC 1 chr3R:17615191-17615311 ( 34) AAGTATGT 1 chr2L:3889734-3889854 ( 108) AAGTATGT 1 chr2R:4013456-4013576 ( 69) CAGTATGC 1 chr3L:16291831-16291951 ( 96) AAGTGGGC 1 chr3L:22456061-22456181 ( 8) GAGTAGGC 1 chr3R:25407237-25407357 ( 16) TAGTATGC 1 chrX:11147676-11147796 ( 20) AAAAATGC 1 chr3R:21223949-21224069 ( 45) AGGAATGC 1 chr2L:138312-138432 ( 32) AAGTATAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.73819 E= 4.3e-040 170 -398 -296 -439 170 -1285 -196 -1285 -143 -1285 208 -1285 -143 -240 -1285 159 168 -240 -296 -1285 -1285 -1285 21 142 -443 -1285 223 -1285 -1285 218 -1285 -339 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 74 E= 4.3e-040 0.945946 0.013514 0.027027 0.013514 0.945946 0.000000 0.054054 0.000000 0.108108 0.000000 0.891892 0.000000 0.108108 0.040541 0.000000 0.851351 0.932432 0.040541 0.027027 0.000000 0.000000 0.000000 0.243243 0.756757 0.013514 0.000000 0.986486 0.000000 0.000000 0.972973 0.000000 0.027027 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-1 regular expression -------------------------------------------------------------------------------- AAGTA[TG]GC -------------------------------------------------------------------------------- Time 7.55 secs. ******************************************************************************** ******************************************************************************** MOTIF GCATACTT MEME-2 width = 8 sites = 59 llr = 545 E-value = 4.7e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCATACTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :19:a::: pos.-specific C :91::9:1 probability G 9::::::: matrix T 1::a:1a9 bits 2.2 2.0 * 1.8 ** * 1.6 ** ***** Relative 1.3 ******** Entropy 1.1 ******** (13.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCATACTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2955789-2955909 46 1.87e-05 AGGTATTGTT GCATACTT GTAGGCAGCG chr2R:7139742-7139862 60 1.87e-05 ACATGTCATT GCATACTT TCGAGCGGAC chr3R:18507864-18507984 30 1.87e-05 GGTTGAAGGG GCATACTT TGAGGCTTGC chr3R:15688557-15688677 35 1.87e-05 AATACGTACA GCATACTT TTCGGCGCTG chr2R:15781239-15781359 44 1.87e-05 TCAGCTTGTA GCATACTT TCAGGCATGA chr2R:7063067-7063187 46 1.87e-05 CAGTATTGCG GCATACTT TTGGGCGAAG chrX:2645657-2645777 58 1.87e-05 CTTGGGACTT GCATACTT TCGGGCGGCG chr2R:13403797-13403917 75 1.87e-05 GCAAAGTGTT GCATACTT CTTGGCTGAA chr3R:5594917-5595037 109 1.87e-05 AAATAGTGCT GCATACTT TTCG chrX:1056703-1056823 85 1.87e-05 CGACGGAGCT GCATACTT TTGGTCCACT chr3L:10644822-10644942 30 1.87e-05 AAATTGTACA GCATACTT TGGGGCGCAC chr3L:8787352-8787472 104 1.87e-05 ATCTGCCGCT GCATACTT TTGAGAGTT chr4:941512-941632 85 1.87e-05 TTTGCATAAT GCATACTT TTCGGCATAG chr2R:22287411-22287531 85 1.87e-05 CAAAACTGTT GCATACTT CTGGGCTAAA chr2L:3889734-3889854 75 1.87e-05 ATGTCAGTTT GCATACTT TTGGTCTGCA chr3L:21359932-21360052 45 1.87e-05 TCAAGCAATT GCATACTT CTAGGCTTTG chrX:5766876-5766996 95 1.87e-05 TGAAATGATA GCATACTT CTGGGCAGAT chr3L:21930366-21930486 62 1.87e-05 TGGTTTCGTT GCATACTT TTAGGCGAAA chr2R:24427602-24427722 83 1.87e-05 ATTGAGTGTT GCATACTT ACTGGCGCCC chr3R:30486062-30486182 105 1.87e-05 TCACTGCGTT GCATACTT TGCGGTGC chr2R:22993182-22993302 67 1.87e-05 GGGTAGCGTT GCATACTT TTTGGCTGCG chr4:415651-415771 16 1.87e-05 CATTTTTGGT GCATACTT TTCGGCGACT chr2L:11475099-11475219 112 1.87e-05 GATTTGTATA GCATACTT T chr2L:1049528-1049648 59 1.87e-05 AAAAAGGGTT GCATACTT CTCGGCTGCA chr2L:3131780-3131900 45 1.87e-05 AATATACTTT GCATACTT TGCCGAGCAA chr3R:20506515-20506635 84 1.87e-05 AGAATACTTT GCATACTT TGCGGATCAG chr3L:15516566-15516686 7 1.87e-05 AACTTA GCATACTT AGGTGAGCTT chr3R:27071895-27072015 42 1.87e-05 AAATCTACTT GCATACTT TAGGGATCTA chr2R:23671823-23671943 80 1.87e-05 CGGAAACGTA GCATACTT TTCAGGGAAT chrX:1196369-1196489 42 1.87e-05 CACAGCCAAG GCATACTT TTGGCCGGAA chr3R:22338720-22338840 88 1.87e-05 ATATATTGCT GCATACTT TCAGGCATTT chr2R:23351104-23351224 67 1.87e-05 ATAGCCTCCA GCATACTT TCAGGCAGCG chr3R:30898738-30898858 90 1.87e-05 CTATATCTCT GCATACTT TTGGAGCGGA chr2R:18372634-18372754 41 3.24e-05 AAAGAGTGTT GCCTACTT TTAGGCCTTT chr2R:13580851-13580971 51 3.24e-05 AAGTACGAAC GCCTACTT GCGACTGCCC chr3L:16875619-16875739 51 3.24e-05 CTGGTTCATT GCCTACTT TCAGGCAGCA chr3R:27057978-27058098 74 3.24e-05 TTAAAACGAA GCCTACTT ATGAGCTGCG chr3R:16611385-16611505 83 3.24e-05 TGACATACTT GCCTACTT TTGGGCCGCG chr3R:20675864-20675984 97 3.24e-05 AAAGTACATT GCCTACTT TTGGGCATAA chr3L:13454854-13454974 36 7.12e-05 CAAAACTTGT GCATATTT TTAGGCGCTC chr3R:13360238-13360358 20 7.12e-05 GCAGACTGCT GCATATTT GGGCGAGCAC chrX:6660039-6660159 46 7.12e-05 CTAAAACGTA GCATACTC TTAAGTGCAC chrX:9202772-9202892 3 7.12e-05 CA GCATATTT GTTAAAAGCT chr2R:11264021-11264141 25 7.12e-05 TATTTATGTA GCATATTT CGCGGCTCCG chr3R:6210294-6210414 92 7.12e-05 GTTTTTCGTT GCATACTC TTTGGCGTCC chr2L:2700371-2700491 110 7.12e-05 ATAAAATATT GCATATTT TGC chr2L:14197311-14197431 46 7.12e-05 GTATTGTATA GCATACTC CCGGGCACCA chr3R:14823072-14823192 22 9.67e-05 AAAATTGATG GAATACTT TTAGGAACTC chr3L:1850683-1850803 72 9.67e-05 AGAAATCGTT GAATACTT TAGGGGCTCA chr3L:7143406-7143526 20 9.67e-05 ACTTGAATCC GAATACTT GGTAGCCCAT chrX:4658040-4658160 85 9.67e-05 CCCATCAAGT GAATACTT TTGGGCGCTA chrX:617253-617373 104 1.24e-04 AACAATACCC GCACACTT TTACACGTA chr2L:18298122-18298242 88 1.24e-04 GTATTTTATT GCATGCTT TTGTGCTGGC chr3R:23004312-23004432 90 1.24e-04 AATTGGCGTA GCATGCTT TTAGGCATAT chrX:21350988-21351108 90 1.24e-04 CACATTGTAT GCACACTT TGGAAAATAT chr2R:16689554-16689674 88 1.49e-04 CAAAAGTGTA TCATACTT CGGGGCCGCT chr2R:24757151-24757271 96 1.49e-04 GTTTTGGTTT TCATACTT GGCTCTCTCA chr2R:7232736-7232856 103 1.49e-04 TATTTGTGAA TCATACTT TCGGGCATCC chrX:13134961-13135081 52 1.75e-04 TAAAAATGTT GCATAATT TCAGGGGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2955789-2955909 1.9e-05 45_[+2]_67 chr2R:7139742-7139862 1.9e-05 59_[+2]_53 chr3R:18507864-18507984 1.9e-05 29_[+2]_83 chr3R:15688557-15688677 1.9e-05 34_[+2]_78 chr2R:15781239-15781359 1.9e-05 43_[+2]_69 chr2R:7063067-7063187 1.9e-05 45_[+2]_67 chrX:2645657-2645777 1.9e-05 57_[+2]_55 chr2R:13403797-13403917 1.9e-05 74_[+2]_38 chr3R:5594917-5595037 1.9e-05 108_[+2]_4 chrX:1056703-1056823 1.9e-05 84_[+2]_28 chr3L:10644822-10644942 1.9e-05 29_[+2]_83 chr3L:8787352-8787472 1.9e-05 103_[+2]_9 chr4:941512-941632 1.9e-05 84_[+2]_28 chr2R:22287411-22287531 1.9e-05 84_[+2]_28 chr2L:3889734-3889854 1.9e-05 74_[+2]_38 chr3L:21359932-21360052 1.9e-05 44_[+2]_68 chrX:5766876-5766996 1.9e-05 94_[+2]_18 chr3L:21930366-21930486 1.9e-05 61_[+2]_51 chr2R:24427602-24427722 1.9e-05 82_[+2]_30 chr3R:30486062-30486182 1.9e-05 104_[+2]_8 chr2R:22993182-22993302 1.9e-05 66_[+2]_46 chr4:415651-415771 1.9e-05 15_[+2]_97 chr2L:11475099-11475219 1.9e-05 111_[+2]_1 chr2L:1049528-1049648 1.9e-05 58_[+2]_54 chr2L:3131780-3131900 1.9e-05 44_[+2]_68 chr3R:20506515-20506635 1.9e-05 83_[+2]_29 chr3L:15516566-15516686 1.9e-05 6_[+2]_106 chr3R:27071895-27072015 1.9e-05 41_[+2]_71 chr2R:23671823-23671943 1.9e-05 79_[+2]_33 chrX:1196369-1196489 1.9e-05 41_[+2]_71 chr3R:22338720-22338840 1.9e-05 87_[+2]_25 chr2R:23351104-23351224 1.9e-05 66_[+2]_46 chr3R:30898738-30898858 1.9e-05 89_[+2]_23 chr2R:18372634-18372754 3.2e-05 40_[+2]_72 chr2R:13580851-13580971 3.2e-05 50_[+2]_62 chr3L:16875619-16875739 3.2e-05 50_[+2]_62 chr3R:27057978-27058098 3.2e-05 73_[+2]_39 chr3R:16611385-16611505 3.2e-05 82_[+2]_30 chr3R:20675864-20675984 3.2e-05 96_[+2]_16 chr3L:13454854-13454974 7.1e-05 35_[+2]_77 chr3R:13360238-13360358 7.1e-05 19_[+2]_93 chrX:6660039-6660159 7.1e-05 45_[+2]_67 chrX:9202772-9202892 7.1e-05 2_[+2]_110 chr2R:11264021-11264141 7.1e-05 24_[+2]_88 chr3R:6210294-6210414 7.1e-05 91_[+2]_21 chr2L:2700371-2700491 7.1e-05 109_[+2]_3 chr2L:14197311-14197431 7.1e-05 45_[+2]_67 chr3R:14823072-14823192 9.7e-05 21_[+2]_91 chr3L:1850683-1850803 9.7e-05 71_[+2]_41 chr3L:7143406-7143526 9.7e-05 19_[+2]_93 chrX:4658040-4658160 9.7e-05 84_[+2]_28 chrX:617253-617373 0.00012 103_[+2]_9 chr2L:18298122-18298242 0.00012 87_[+2]_25 chr3R:23004312-23004432 0.00012 89_[+2]_23 chrX:21350988-21351108 0.00012 89_[+2]_23 chr2R:16689554-16689674 0.00015 87_[+2]_25 chr2R:24757151-24757271 0.00015 95_[+2]_17 chr2R:7232736-7232856 0.00015 102_[+2]_10 chrX:13134961-13135081 0.00017 51_[+2]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCATACTT width=8 seqs=59 chr2L:2955789-2955909 ( 46) GCATACTT 1 chr2R:7139742-7139862 ( 60) GCATACTT 1 chr3R:18507864-18507984 ( 30) GCATACTT 1 chr3R:15688557-15688677 ( 35) GCATACTT 1 chr2R:15781239-15781359 ( 44) GCATACTT 1 chr2R:7063067-7063187 ( 46) GCATACTT 1 chrX:2645657-2645777 ( 58) GCATACTT 1 chr2R:13403797-13403917 ( 75) GCATACTT 1 chr3R:5594917-5595037 ( 109) GCATACTT 1 chrX:1056703-1056823 ( 85) GCATACTT 1 chr3L:10644822-10644942 ( 30) GCATACTT 1 chr3L:8787352-8787472 ( 104) GCATACTT 1 chr4:941512-941632 ( 85) GCATACTT 1 chr2R:22287411-22287531 ( 85) GCATACTT 1 chr2L:3889734-3889854 ( 75) GCATACTT 1 chr3L:21359932-21360052 ( 45) GCATACTT 1 chrX:5766876-5766996 ( 95) GCATACTT 1 chr3L:21930366-21930486 ( 62) GCATACTT 1 chr2R:24427602-24427722 ( 83) GCATACTT 1 chr3R:30486062-30486182 ( 105) GCATACTT 1 chr2R:22993182-22993302 ( 67) GCATACTT 1 chr4:415651-415771 ( 16) GCATACTT 1 chr2L:11475099-11475219 ( 112) GCATACTT 1 chr2L:1049528-1049648 ( 59) GCATACTT 1 chr2L:3131780-3131900 ( 45) GCATACTT 1 chr3R:20506515-20506635 ( 84) GCATACTT 1 chr3L:15516566-15516686 ( 7) GCATACTT 1 chr3R:27071895-27072015 ( 42) GCATACTT 1 chr2R:23671823-23671943 ( 80) GCATACTT 1 chrX:1196369-1196489 ( 42) GCATACTT 1 chr3R:22338720-22338840 ( 88) GCATACTT 1 chr2R:23351104-23351224 ( 67) GCATACTT 1 chr3R:30898738-30898858 ( 90) GCATACTT 1 chr2R:18372634-18372754 ( 41) GCCTACTT 1 chr2R:13580851-13580971 ( 51) GCCTACTT 1 chr3L:16875619-16875739 ( 51) GCCTACTT 1 chr3R:27057978-27058098 ( 74) GCCTACTT 1 chr3R:16611385-16611505 ( 83) GCCTACTT 1 chr3R:20675864-20675984 ( 97) GCCTACTT 1 chr3L:13454854-13454974 ( 36) GCATATTT 1 chr3R:13360238-13360358 ( 20) GCATATTT 1 chrX:6660039-6660159 ( 46) GCATACTC 1 chrX:9202772-9202892 ( 3) GCATATTT 1 chr2R:11264021-11264141 ( 25) GCATATTT 1 chr3R:6210294-6210414 ( 92) GCATACTC 1 chr2L:2700371-2700491 ( 110) GCATATTT 1 chr2L:14197311-14197431 ( 46) GCATACTC 1 chr3R:14823072-14823192 ( 22) GAATACTT 1 chr3L:1850683-1850803 ( 72) GAATACTT 1 chr3L:7143406-7143526 ( 20) GAATACTT 1 chrX:4658040-4658160 ( 85) GAATACTT 1 chrX:617253-617373 ( 104) GCACACTT 1 chr2L:18298122-18298242 ( 88) GCATGCTT 1 chr3R:23004312-23004432 ( 90) GCATGCTT 1 chrX:21350988-21351108 ( 90) GCACACTT 1 chr2R:16689554-16689674 ( 88) TCATACTT 1 chr2R:24757151-24757271 ( 96) TCATACTT 1 chr2R:7232736-7232856 ( 103) TCATACTT 1 chrX:13134961-13135081 ( 52) GCATAATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.55909 E= 4.7e-040 -1253 -1253 217 -248 -211 212 -1253 -1253 162 -108 -1253 -1253 -1253 -266 -1253 177 173 -1253 -263 -1253 -410 207 -1253 -174 -1253 -1253 -1253 182 -1253 -207 -1253 174 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 4.7e-040 0.000000 0.000000 0.949153 0.050847 0.067797 0.932203 0.000000 0.000000 0.898305 0.101695 0.000000 0.000000 0.000000 0.033898 0.000000 0.966102 0.966102 0.000000 0.033898 0.000000 0.016949 0.898305 0.000000 0.084746 0.000000 0.000000 0.000000 1.000000 0.000000 0.050847 0.000000 0.949153 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-2 regular expression -------------------------------------------------------------------------------- GCATACTT -------------------------------------------------------------------------------- Time 13.73 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACACAC MEME-3 width = 8 sites = 41 llr = 385 E-value = 3.0e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACACAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 8:91a:a: pos.-specific C :a:9:a:a probability G 1::::::: matrix T 1::::::: bits 2.2 * * 2.0 * * * 1.8 * ** * 1.6 * ***** Relative 1.3 ******* Entropy 1.1 ******* (13.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACACACAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5648048-5648168 55 1.52e-05 CCTAGAATAC ACACACAC GCATACACTT chrX:18137407-18137527 2 1.52e-05 C ACACACAC GTACACAAAG chr3R:24876051-24876171 98 1.52e-05 acacgcacac acacacac accctctacc chrX:19637961-19638081 34 1.52e-05 aacggcacac acacacac acgctcagtc chr2R:17871441-17871561 82 1.52e-05 gcactcgcca acacacac acgcacacag chr3R:18249376-18249496 10 1.52e-05 cgcagacta acacacac ccaccaccca chr2L:10260112-10260232 94 1.52e-05 atacacacac acacacac acaggcaggc chrX:20251774-20251894 38 1.52e-05 caccgcacac acacacac acgcgcacaT chr3R:13379352-13379472 76 1.52e-05 CAAAGCAAAC ACACACAC AAGTGTAAAT chr3R:13259251-13259371 25 1.52e-05 TCTCTCAAAC ACACACAC ACACTCTCAT chr2R:13304198-13304318 107 1.52e-05 acatacgcac acacacac acacag chrX:16637099-16637219 61 1.52e-05 Tcacagacac acacacac gcgcgcacac chr2R:21547173-21547293 77 1.52e-05 CCACTCGAAA ACACACAC TCACTCTCAC chrX:20434059-20434179 106 1.52e-05 CAGCATCATC ACACACAC TCTGTTG chrX:14772144-14772264 110 1.52e-05 gcacacacac acacacac aca chr3L:22346695-22346815 41 1.52e-05 AAGGGGCAAA ACACACAC TTTTCAGGCC chr2R:17802473-17802593 4 1.52e-05 AAA ACACACAC ACGAATTTCA chrX:16334351-16334471 100 1.52e-05 TTTATTTAAA acacacac gcacgcacac chrX:7285588-7285708 10 1.52e-05 aggacacgc acacacac acaggcgcac chr3R:17717701-17717821 66 1.52e-05 actcactcgc acacacac tcacacaGCC chr2L:13489270-13489390 30 1.52e-05 CCTTCTTTTC ACACACAC ACGAGACAAG chrX:6283326-6283446 28 1.52e-05 acacacacac acacacac aGATAGAAGC chr2R:22684386-22684506 48 2.63e-05 ACATAATCAC GCACACAC AGCTCTTGTT chr3R:22338720-22338840 29 2.63e-05 ACACAAACAC GCACACAC TCTCTCTCTC chrX:21350988-21351108 75 2.63e-05 AACTTTTTTC GCACACAC ATTGTATGCA chrX:58972-59092 39 2.63e-05 tccttctcat gcacacac tcacactagc chr2R:19941723-19941843 8 4.10e-05 tacacac tcacacac gaacaGCCCG chr2L:3341320-3341440 33 4.10e-05 ATAATATAAT TCACACAC ATGCAGAGAA chrX:3154800-3154920 46 4.10e-05 TAAAGCATTT TCACACAC TTGTAACGGG chr2R:19467822-19467942 13 4.10e-05 AAGAAAATAC TCACACAC TATCAAACGA chrX:617253-617373 72 6.31e-05 CCAACTTCAC ACGCACAC CAATACGTTG chr2L:1644495-1644615 18 6.31e-05 GCGCACCAAT ACACACGC GCGATCAGTG chrX:6660039-6660159 99 6.31e-05 CAACACACCC ACACACGC GCCAACGGAG chr2R:7806893-7807013 13 6.31e-05 TGATTTACCC ACGCACAC CACCGTTCTG chr2L:138312-138432 15 8.39e-05 ATGCCACAAA ACAAACAC CTGTTGGTAA chr3L:2636159-2636279 5 8.39e-05 aggg acaaacac TAGCGCAAAA chr3R:21256433-21256553 14 1.16e-04 AAGATGGTGT ACACACAA AGAAATGTCA chrX:5895718-5895838 29 1.16e-04 AGACCTCGGC ACCCACAC GTGAGACGGT chr2R:18638771-18638891 34 1.16e-04 AATGACGCAT ACACACAA ACTTACCACC chrX:1613224-1613344 27 1.31e-04 atatacagat acagacac atatactgtt chr3R:12628327-12628447 73 1.62e-04 ACGTGAAGAA GCAAACAC TGGACGATGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5648048-5648168 1.5e-05 54_[+3]_58 chrX:18137407-18137527 1.5e-05 1_[+3]_111 chr3R:24876051-24876171 1.5e-05 97_[+3]_15 chrX:19637961-19638081 1.5e-05 33_[+3]_79 chr2R:17871441-17871561 1.5e-05 81_[+3]_31 chr3R:18249376-18249496 1.5e-05 9_[+3]_103 chr2L:10260112-10260232 1.5e-05 93_[+3]_19 chrX:20251774-20251894 1.5e-05 37_[+3]_75 chr3R:13379352-13379472 1.5e-05 75_[+3]_37 chr3R:13259251-13259371 1.5e-05 24_[+3]_88 chr2R:13304198-13304318 1.5e-05 106_[+3]_6 chrX:16637099-16637219 1.5e-05 60_[+3]_52 chr2R:21547173-21547293 1.5e-05 76_[+3]_36 chrX:20434059-20434179 1.5e-05 105_[+3]_7 chrX:14772144-14772264 1.5e-05 109_[+3]_3 chr3L:22346695-22346815 1.5e-05 40_[+3]_72 chr2R:17802473-17802593 1.5e-05 3_[+3]_109 chrX:16334351-16334471 1.5e-05 99_[+3]_13 chrX:7285588-7285708 1.5e-05 9_[+3]_103 chr3R:17717701-17717821 1.5e-05 65_[+3]_47 chr2L:13489270-13489390 1.5e-05 29_[+3]_83 chrX:6283326-6283446 1.5e-05 27_[+3]_85 chr2R:22684386-22684506 2.6e-05 47_[+3]_65 chr3R:22338720-22338840 2.6e-05 28_[+3]_84 chrX:21350988-21351108 2.6e-05 74_[+3]_38 chrX:58972-59092 2.6e-05 38_[+3]_74 chr2R:19941723-19941843 4.1e-05 7_[+3]_105 chr2L:3341320-3341440 4.1e-05 32_[+3]_80 chrX:3154800-3154920 4.1e-05 45_[+3]_67 chr2R:19467822-19467942 4.1e-05 12_[+3]_100 chrX:617253-617373 6.3e-05 71_[+3]_41 chr2L:1644495-1644615 6.3e-05 17_[+3]_95 chrX:6660039-6660159 6.3e-05 98_[+3]_14 chr2R:7806893-7807013 6.3e-05 12_[+3]_100 chr2L:138312-138432 8.4e-05 14_[+3]_98 chr3L:2636159-2636279 8.4e-05 4_[+3]_108 chr3R:21256433-21256553 0.00012 13_[+3]_99 chrX:5895718-5895838 0.00012 28_[+3]_84 chr2R:18638771-18638891 0.00012 33_[+3]_79 chrX:1613224-1613344 0.00013 26_[+3]_86 chr3R:12628327-12628447 0.00016 72_[+3]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACACAC width=8 seqs=41 chr3R:5648048-5648168 ( 55) ACACACAC 1 chrX:18137407-18137527 ( 2) ACACACAC 1 chr3R:24876051-24876171 ( 98) ACACACAC 1 chrX:19637961-19638081 ( 34) ACACACAC 1 chr2R:17871441-17871561 ( 82) ACACACAC 1 chr3R:18249376-18249496 ( 10) ACACACAC 1 chr2L:10260112-10260232 ( 94) ACACACAC 1 chrX:20251774-20251894 ( 38) ACACACAC 1 chr3R:13379352-13379472 ( 76) ACACACAC 1 chr3R:13259251-13259371 ( 25) ACACACAC 1 chr2R:13304198-13304318 ( 107) ACACACAC 1 chrX:16637099-16637219 ( 61) ACACACAC 1 chr2R:21547173-21547293 ( 77) ACACACAC 1 chrX:20434059-20434179 ( 106) ACACACAC 1 chrX:14772144-14772264 ( 110) ACACACAC 1 chr3L:22346695-22346815 ( 41) ACACACAC 1 chr2R:17802473-17802593 ( 4) ACACACAC 1 chrX:16334351-16334471 ( 100) ACACACAC 1 chrX:7285588-7285708 ( 10) ACACACAC 1 chr3R:17717701-17717821 ( 66) ACACACAC 1 chr2L:13489270-13489390 ( 30) ACACACAC 1 chrX:6283326-6283446 ( 28) ACACACAC 1 chr2R:22684386-22684506 ( 48) GCACACAC 1 chr3R:22338720-22338840 ( 29) GCACACAC 1 chrX:21350988-21351108 ( 75) GCACACAC 1 chrX:58972-59092 ( 39) GCACACAC 1 chr2R:19941723-19941843 ( 8) TCACACAC 1 chr2L:3341320-3341440 ( 33) TCACACAC 1 chrX:3154800-3154920 ( 46) TCACACAC 1 chr2R:19467822-19467942 ( 13) TCACACAC 1 chrX:617253-617373 ( 72) ACGCACAC 1 chr2L:1644495-1644615 ( 18) ACACACGC 1 chrX:6660039-6660159 ( 99) ACACACGC 1 chr2R:7806893-7807013 ( 13) ACGCACAC 1 chr2L:138312-138432 ( 15) ACAAACAC 1 chr3L:2636159-2636279 ( 5) ACAAACAC 1 chr3R:21256433-21256553 ( 14) ACACACAA 1 chrX:5895718-5895838 ( 29) ACCCACAC 1 chr2R:18638771-18638891 ( 34) ACACACAA 1 chrX:1613224-1613344 ( 27) ACAGACAC 1 chr3R:12628327-12628447 ( 73) GCAAACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3926 E= 3.0e-019 142 -1200 -79 -154 -1200 222 -1200 -1200 167 -313 -211 -1200 -200 207 -311 -1200 178 -1200 -1200 -1200 -1200 222 -1200 -1200 170 -1200 -211 -1200 -258 215 -1200 -1200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 3.0e-019 0.780488 0.000000 0.121951 0.097561 0.000000 1.000000 0.000000 0.000000 0.926829 0.024390 0.048780 0.000000 0.073171 0.902439 0.024390 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.951220 0.000000 0.048780 0.000000 0.048780 0.951220 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-3 regular expression -------------------------------------------------------------------------------- ACACACAC -------------------------------------------------------------------------------- Time 19.78 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGTGT MEME-4 width = 8 sites = 33 llr = 320 E-value = 1.9e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 1::::2:: probability G 9:a:a28: matrix T :a:a:62a bits 2.2 * * 2.0 * * * 1.8 ***** * 1.6 ***** ** Relative 1.3 ***** ** Entropy 1.1 ***** ** (14.0 bits) 0.9 ***** ** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGTGT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7423977-7424097 77 1.27e-05 gatggtgtgc gtgtgtgt gtgacgcgtt chrX:2643187-2643307 99 1.27e-05 GCCCCtgtgt gtgtgtgt gtgtatttgt chrX:20251774-20251894 84 1.27e-05 ATATATATAC GTGTGTGT GGGTGTGTGA chr3L:16875619-16875739 27 1.27e-05 TTGGCGTTTG GTGTGTGT AGCTTTCTGG chr3R:29749551-29749671 86 1.27e-05 CAAGgtgtgc gtgtgtgt gagtgcgtgc chr3R:21256433-21256553 43 1.27e-05 TATATCAACT GTGTGTGT CCACTTGTGC chr2R:13953711-13953831 4 1.27e-05 tgt gtgtgtgt gCTCCTCCGC chrX:21351395-21351515 112 1.27e-05 GAGCgtgtgt gtgtgtgt g chr2L:17472582-17472702 81 1.27e-05 GCGAACgtgt gtgtgtgt gtgtgGAATG chr2R:7806893-7807013 73 1.27e-05 gtgcatgtgt gtgtgtgt gttagtgctg chrX:8399163-8399283 44 1.27e-05 gtctttaatt gtgtgtgt gtttgtgcta chrX:13304023-13304143 40 1.27e-05 tcgcgcgtgt gtgtgtgt gtgCGACGTA chr2R:17802473-17802593 105 1.27e-05 gagtatctgt gtgtgtgt acgtgtgc chrX:3649773-3649893 31 1.27e-05 gtgtgggtgc gtgtgtgt gtgtgtgtgt chr2L:6086803-6086923 101 1.27e-05 AATTGCACGA GTGTGTGT GCGCAAAATA chr4:1306485-1306605 74 1.27e-05 ttccctttgt gtgtgtgt gtggtgggtg chr3L:626372-626492 26 2.23e-05 GACCTTCGAT GTGTGCGT GAGAAATGCT chr3L:1350005-1350125 15 2.23e-05 AGTGCAGCAG GTGTGCGT GTATGTGTGT chrX:9675040-9675160 59 2.23e-05 GAATGTAAAG GTGTGCGT GCAAGCGAGA chrX:16586697-16586817 86 2.23e-05 ATTTGCGTCT GTGTGCGT GCGTGTGTTG chr2R:22684386-22684506 25 2.23e-05 CTTTGCGGCA GTGTGCGT TGTGTACATA chr3R:22338720-22338840 65 2.23e-05 TGTTGTCATT GTGTGCGT GAACTATATA chr4:1318936-1319056 92 3.18e-05 agctgcatta gtgtgggt catttttggg chr3R:20781723-20781843 109 3.18e-05 agctgcatct gtgtgggt gtat chrX:7923217-7923337 58 3.18e-05 Ttgtgtgtct gtgtgggt gggtgttggc chr2R:17871441-17871561 9 4.89e-05 GTATTTTT GTGTGTTT TTCTTCCTTT chr3R:21126866-21126986 7 4.89e-05 AAATCG GTGTGTTT AATGCATTTA chrX:19522557-19522677 51 6.18e-05 GTCTTCGGTT GTGTGCTT GTGGGGCACC chr3R:6210294-6210414 21 6.18e-05 GCAATTTATT GTGTGCTT TCGGGTGCTT chr2R:17470007-17470127 113 7.46e-05 ATGCCtgtga ctgtgtgt chr3L:8787352-8787472 42 7.46e-05 TGTCTCTCAC CTGTGTGT TGCATACTCG chrX:1056703-1056823 8 8.74e-05 GCATCGC GTGTGGTT CCTTTCATCA chrX:5895718-5895838 52 8.74e-05 ACGGTGCGAC GTGTGGTT TTCGCTACTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7423977-7424097 1.3e-05 76_[+4]_36 chrX:2643187-2643307 1.3e-05 98_[+4]_14 chrX:20251774-20251894 1.3e-05 83_[+4]_29 chr3L:16875619-16875739 1.3e-05 26_[+4]_86 chr3R:29749551-29749671 1.3e-05 85_[+4]_27 chr3R:21256433-21256553 1.3e-05 42_[+4]_70 chr2R:13953711-13953831 1.3e-05 3_[+4]_109 chrX:21351395-21351515 1.3e-05 111_[+4]_1 chr2L:17472582-17472702 1.3e-05 80_[+4]_32 chr2R:7806893-7807013 1.3e-05 72_[+4]_40 chrX:8399163-8399283 1.3e-05 43_[+4]_69 chrX:13304023-13304143 1.3e-05 39_[+4]_73 chr2R:17802473-17802593 1.3e-05 104_[+4]_8 chrX:3649773-3649893 1.3e-05 30_[+4]_82 chr2L:6086803-6086923 1.3e-05 100_[+4]_12 chr4:1306485-1306605 1.3e-05 73_[+4]_39 chr3L:626372-626492 2.2e-05 25_[+4]_87 chr3L:1350005-1350125 2.2e-05 14_[+4]_98 chrX:9675040-9675160 2.2e-05 58_[+4]_54 chrX:16586697-16586817 2.2e-05 85_[+4]_27 chr2R:22684386-22684506 2.2e-05 24_[+4]_88 chr3R:22338720-22338840 2.2e-05 64_[+4]_48 chr4:1318936-1319056 3.2e-05 91_[+4]_21 chr3R:20781723-20781843 3.2e-05 108_[+4]_4 chrX:7923217-7923337 3.2e-05 57_[+4]_55 chr2R:17871441-17871561 4.9e-05 8_[+4]_104 chr3R:21126866-21126986 4.9e-05 6_[+4]_106 chrX:19522557-19522677 6.2e-05 50_[+4]_62 chr3R:6210294-6210414 6.2e-05 20_[+4]_92 chr2R:17470007-17470127 7.5e-05 112_[+4] chr3L:8787352-8787472 7.5e-05 41_[+4]_71 chrX:1056703-1056823 8.7e-05 7_[+4]_105 chrX:5895718-5895838 8.7e-05 51_[+4]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGTGT width=8 seqs=33 chr2L:7423977-7424097 ( 77) GTGTGTGT 1 chrX:2643187-2643307 ( 99) GTGTGTGT 1 chrX:20251774-20251894 ( 84) GTGTGTGT 1 chr3L:16875619-16875739 ( 27) GTGTGTGT 1 chr3R:29749551-29749671 ( 86) GTGTGTGT 1 chr3R:21256433-21256553 ( 43) GTGTGTGT 1 chr2R:13953711-13953831 ( 4) GTGTGTGT 1 chrX:21351395-21351515 ( 112) GTGTGTGT 1 chr2L:17472582-17472702 ( 81) GTGTGTGT 1 chr2R:7806893-7807013 ( 73) GTGTGTGT 1 chrX:8399163-8399283 ( 44) GTGTGTGT 1 chrX:13304023-13304143 ( 40) GTGTGTGT 1 chr2R:17802473-17802593 ( 105) GTGTGTGT 1 chrX:3649773-3649893 ( 31) GTGTGTGT 1 chr2L:6086803-6086923 ( 101) GTGTGTGT 1 chr4:1306485-1306605 ( 74) GTGTGTGT 1 chr3L:626372-626492 ( 26) GTGTGCGT 1 chr3L:1350005-1350125 ( 15) GTGTGCGT 1 chrX:9675040-9675160 ( 59) GTGTGCGT 1 chrX:16586697-16586817 ( 86) GTGTGCGT 1 chr2R:22684386-22684506 ( 25) GTGTGCGT 1 chr3R:22338720-22338840 ( 65) GTGTGCGT 1 chr4:1318936-1319056 ( 92) GTGTGGGT 1 chr3R:20781723-20781843 ( 109) GTGTGGGT 1 chrX:7923217-7923337 ( 58) GTGTGGGT 1 chr2R:17871441-17871561 ( 9) GTGTGTTT 1 chr3R:21126866-21126986 ( 7) GTGTGTTT 1 chrX:19522557-19522677 ( 51) GTGTGCTT 1 chr3R:6210294-6210414 ( 21) GTGTGCTT 1 chr2R:17470007-17470127 ( 113) CTGTGTGT 1 chr3L:8787352-8787472 ( 42) CTGTGTGT 1 chrX:1056703-1056823 ( 8) GTGTGGTT 1 chrX:5895718-5895838 ( 52) GTGTGGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 1.9e-015 -1169 -182 216 -1169 -1169 -1169 -1169 182 -1169 -1169 225 -1169 -1169 -1169 -1169 182 -1169 -1169 225 -1169 -1169 18 -47 110 -1169 -1169 196 -64 -1169 -1169 -1169 182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.9e-015 0.000000 0.060606 0.939394 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.242424 0.151515 0.606061 0.000000 0.000000 0.818182 0.181818 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 regular expression -------------------------------------------------------------------------------- GTGTG[TC]GT -------------------------------------------------------------------------------- Time 25.74 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGCR MEME-5 width = 8 sites = 25 llr = 226 E-value = 7.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGCR MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::4 pos.-specific C ::1:::9: probability G :7:a3a16 matrix T a39:7::: bits 2.2 * * 2.0 * * 1.8 * * ** 1.6 * * ** Relative 1.3 * ** ** Entropy 1.1 ******** (13.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGCG consensus T G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGCR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17470007-17470127 32 9.61e-06 CCAAAGCTCT TGTGTGCG GAACTACGGC chrX:16586697-16586817 30 9.61e-06 TGGCTGGGCA TGTGTGCG TGTGTTTGTT chr3R:29749551-29749671 109 9.61e-06 cgtgcgtgcg tgtgtgcg tgcg chr2L:17472582-17472702 31 9.61e-06 TTTTTGCGTG TGTGTGCG TGCGTTTCAC chr2R:17802473-17802593 71 9.61e-06 ACCTCgtgtg tgtgtgcg tgtgtgttga chrX:3649773-3649893 46 9.61e-06 tgtgtgtgtg tgtgtgcg tTGGGTAAAT chr3R:25754060-25754180 12 1.68e-05 CGGACGCCAT TGTGGGCG CTCTGTTTCA chr2L:1644495-1644615 92 3.01e-05 AGATAGCGGG TGTGTGCA AAAATTGCAA chr2R:13953711-13953831 82 3.01e-05 GCCCAAAAAA TGTGTGCA CGTAGAATTC chr2R:7806893-7807013 60 3.01e-05 CTGGGGCGCC tgtgtgca tgtgtgtgtg chrX:16334351-16334471 70 3.01e-05 CAGGTAAGCT TGTGTGCA GGTATACGGC chrX:494791-494911 64 3.01e-05 GAAGTCAACT TGTGTGCA GGAGCATATA chr2L:6086803-6086923 73 3.01e-05 CAGCTGCAGC TGTGTGCA TTTGAAGGCG chr2L:9120607-9120727 13 4.30e-05 CGGTGGAATA TTTGTGCG GGTTGCCTAA chr3R:30486062-30486182 46 4.30e-05 ACAAGGGGTT TTTGTGCG GGTGAGTAAA chrX:18520498-18520618 29 5.29e-05 AAGTTTGATA TGTGGGCA TTGTTTCGTT chr2L:1049528-1049648 25 5.29e-05 CAAGCAGGAA TGTGGGCA ATGAAAAAGG chr3R:12652839-12652959 88 6.25e-05 TGGAGTATCT TTTGGGCG GTTTTCCTTA chr2R:22993182-22993302 43 6.25e-05 GCAGCATACT TTTGGGCG CCGGACGGGT chr2R:7889476-7889596 40 6.25e-05 GAAGCGTAGT TTTGGGCG CGCTACTGAA chr3R:25407237-25407357 62 8.04e-05 TGTTCGCCTG TTTGTGCA AAATTTATGC chrX:9675040-9675160 107 9.71e-05 ATTGCGAGAG TGTGTGGG TGGTTT chrX:19578353-19578473 24 1.16e-04 GGAGGCGTTT TGCGGGCG TCTGCGGATA chr2R:11379725-11379845 1 1.43e-04 . TTCGTGCG CGGCAAAGAA chrX:19579039-19579159 107 1.69e-04 TTGATTGAAA TTTGTGGG ATCAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGCR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17470007-17470127 9.6e-06 31_[+5]_81 chrX:16586697-16586817 9.6e-06 29_[+5]_83 chr3R:29749551-29749671 9.6e-06 108_[+5]_4 chr2L:17472582-17472702 9.6e-06 30_[+5]_82 chr2R:17802473-17802593 9.6e-06 70_[+5]_42 chrX:3649773-3649893 9.6e-06 45_[+5]_67 chr3R:25754060-25754180 1.7e-05 11_[+5]_101 chr2L:1644495-1644615 3e-05 91_[+5]_21 chr2R:13953711-13953831 3e-05 81_[+5]_31 chr2R:7806893-7807013 3e-05 59_[+5]_53 chrX:16334351-16334471 3e-05 69_[+5]_43 chrX:494791-494911 3e-05 63_[+5]_49 chr2L:6086803-6086923 3e-05 72_[+5]_40 chr2L:9120607-9120727 4.3e-05 12_[+5]_100 chr3R:30486062-30486182 4.3e-05 45_[+5]_67 chrX:18520498-18520618 5.3e-05 28_[+5]_84 chr2L:1049528-1049648 5.3e-05 24_[+5]_88 chr3R:12652839-12652959 6.3e-05 87_[+5]_25 chr2R:22993182-22993302 6.3e-05 42_[+5]_70 chr2R:7889476-7889596 6.3e-05 39_[+5]_73 chr3R:25407237-25407357 8e-05 61_[+5]_51 chrX:9675040-9675160 9.7e-05 106_[+5]_6 chrX:19578353-19578473 0.00012 23_[+5]_89 chr2R:11379725-11379845 0.00014 [+5]_112 chrX:19579039-19579159 0.00017 106_[+5]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGCR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGCR width=8 seqs=25 chr2R:17470007-17470127 ( 32) TGTGTGCG 1 chrX:16586697-16586817 ( 30) TGTGTGCG 1 chr3R:29749551-29749671 ( 109) TGTGTGCG 1 chr2L:17472582-17472702 ( 31) TGTGTGCG 1 chr2R:17802473-17802593 ( 71) TGTGTGCG 1 chrX:3649773-3649893 ( 46) TGTGTGCG 1 chr3R:25754060-25754180 ( 12) TGTGGGCG 1 chr2L:1644495-1644615 ( 92) TGTGTGCA 1 chr2R:13953711-13953831 ( 82) TGTGTGCA 1 chr2R:7806893-7807013 ( 60) TGTGTGCA 1 chrX:16334351-16334471 ( 70) TGTGTGCA 1 chrX:494791-494911 ( 64) TGTGTGCA 1 chr2L:6086803-6086923 ( 73) TGTGTGCA 1 chr2L:9120607-9120727 ( 13) TTTGTGCG 1 chr3R:30486062-30486182 ( 46) TTTGTGCG 1 chrX:18520498-18520618 ( 29) TGTGGGCA 1 chr2L:1049528-1049648 ( 25) TGTGGGCA 1 chr3R:12652839-12652959 ( 88) TTTGGGCG 1 chr2R:22993182-22993302 ( 43) TTTGGGCG 1 chr2R:7889476-7889596 ( 40) TTTGGGCG 1 chr3R:25407237-25407357 ( 62) TTTGTGCA 1 chrX:9675040-9675160 ( 107) TGTGTGGG 1 chrX:19578353-19578473 ( 24) TGCGGGCG 1 chr2R:11379725-11379845 ( 1) TTCGTGCG 1 chrX:19579039-19579159 ( 107) TTTGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGCR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.84894 E= 7.7e+002 -1129 -1129 -1129 182 -1129 -1129 169 18 -1129 -142 -1129 170 -1129 -1129 225 -1129 -1129 -1129 41 135 -1129 -1129 225 -1129 -1129 210 -140 -1129 30 -1129 160 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGCR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 7.7e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.680000 0.320000 0.000000 0.080000 0.000000 0.920000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.280000 0.720000 0.000000 0.000000 1.000000 0.000000 0.000000 0.920000 0.080000 0.000000 0.360000 0.000000 0.640000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGCR MEME-5 regular expression -------------------------------------------------------------------------------- T[GT]TG[TG]GC[GA] -------------------------------------------------------------------------------- Time 31.62 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:58972-59092 2.03e-01 38_[+3(2.63e-05)]_74 chrX:6283326-6283446 1.24e-01 7_[+3(1.52e-05)]_[+3(1.52e-05)]_\ [+3(1.52e-05)]_89 chr4:1306485-1306605 5.94e-03 71_[+4(1.27e-05)]_41 chr2L:20290822-20290942 1.29e-01 120 chr3L:20183859-20183979 2.23e-02 120 chr3R:30529066-30529186 7.15e-01 120 chr3R:30898738-30898858 1.02e-02 36_[+1(7.91e-05)]_45_[+2(1.87e-05)]_\ 23 chr2L:14197311-14197431 2.37e-01 45_[+2(7.12e-05)]_67 chr3L:4541209-4541329 8.29e-01 120 chr2R:23351104-23351224 1.05e-04 32_[+1(1.90e-05)]_26_[+2(1.87e-05)]_\ 46 chr2R:19467822-19467942 6.39e-04 12_[+3(4.10e-05)]_100 chr3R:5611606-5611726 9.60e-01 120 chrX:21350988-21351108 7.30e-04 74_[+3(2.63e-05)]_38 chrX:6843404-6843524 5.55e-01 120 chrX:17262238-17262358 1.07e-02 78_[+1(1.90e-05)]_34 chr2R:17114889-17115009 1.51e-01 120 chr2L:2700371-2700491 2.46e-01 109_[+2(7.12e-05)]_3 chr2L:1198535-1198655 3.24e-02 34_[+1(7.91e-05)]_78 chr3R:22338720-22338840 2.71e-07 28_[+3(2.63e-05)]_27_[+5(9.61e-06)]_\ 16_[+2(1.87e-05)]_25 chr3R:25407237-25407357 5.82e-03 61_[+5(8.04e-05)]_51 chrX:18772125-18772245 7.87e-03 28_[+1(1.90e-05)]_37_[+1(1.90e-05)]_\ 39 chrX:4658040-4658160 4.91e-04 44_[+1(7.91e-05)]_39_[+5(6.25e-05)]_\ 21 chr2L:6086803-6086923 2.26e-04 72_[+5(3.01e-05)]_23_[+5(9.61e-06)]_\ 9 chr2L:13489270-13489390 9.30e-03 29_[+3(1.52e-05)]_83 chrX:7923217-7923337 1.32e-02 57_[+4(3.18e-05)]_55 chrX:1196369-1196489 3.00e-03 41_[+2(1.87e-05)]_71 chrX:12478534-12478654 2.55e-01 120 chr3L:18957168-18957288 3.71e-01 120 chrX:14862608-14862728 3.19e-01 120 chrX:21632937-21633057 9.24e-01 120 chr2L:1678318-1678438 4.98e-01 120 chr3L:4449185-4449305 1.40e-01 120 chrX:494791-494911 2.91e-02 63_[+5(3.01e-05)]_49 chr3L:15809965-15810085 1.01e-02 120 chr2R:23671823-23671943 4.46e-04 37_[+1(1.90e-05)]_34_[+2(1.87e-05)]_\ 33 chrX:19310242-19310362 4.53e-01 120 chr2R:18638771-18638891 1.48e-01 120 chr2R:7232736-7232856 8.25e-02 120 chrX:3649773-3649893 9.99e-04 20_[+4(3.18e-05)]_2_[+4(1.27e-05)]_\ [+4(1.27e-05)]_[+4(2.23e-05)]_66 chr2R:11252255-11252375 1.09e-01 120 chr2L:18513571-18513691 3.33e-01 120 chr3R:27071895-27072015 7.34e-02 41_[+2(1.87e-05)]_71 chr3R:6210294-6210414 5.40e-04 20_[+4(6.18e-05)]_63_[+2(7.12e-05)]_\ 21 chr2L:8974689-8974809 6.11e-01 120 chrX:17076928-17077048 2.63e-01 120 chr3R:23306881-23307001 9.74e-01 120 chr3R:17717701-17717821 6.73e-02 45_[+3(1.52e-05)]_12_[+3(1.52e-05)]_\ 47 chr3L:15516566-15516686 1.56e-02 6_[+2(1.87e-05)]_106 chr3L:26013744-26013864 2.99e-02 120 chr3R:20506515-20506635 7.08e-02 74_[+2(9.67e-05)]_1_[+2(1.87e-05)]_\ 29 chr2R:16103733-16103853 4.76e-01 120 chrX:3154800-3154920 2.41e-01 45_[+3(4.10e-05)]_67 chr3L:968292-968412 5.89e-02 78_[+1(3.32e-05)]_34 chr3R:20675864-20675984 5.36e-03 96_[+2(3.24e-05)]_16 chr3R:9327937-9328057 5.43e-01 120 chr3L:1926639-1926759 9.06e-01 120 chr2L:3762877-3762997 9.33e-03 29_[+1(1.90e-05)]_83 chr2R:4546030-4546150 8.78e-01 120 chrX:7285588-7285708 3.01e-02 9_[+3(1.52e-05)]_6_[+3(2.63e-05)]_\ 89 chrX:16334351-16334471 8.49e-05 69_[+5(3.01e-05)]_22_[+3(1.52e-05)]_\ 4_[+3(2.63e-05)]_1 chr2L:3131780-3131900 1.06e-01 44_[+2(1.87e-05)]_68 chrX:10841030-10841150 5.10e-01 120 chr2R:4013456-4013576 1.26e-01 120 chrX:13257835-13257955 8.24e-01 120 chr2R:23980035-23980155 9.03e-01 120 chr2R:17802473-17802593 2.79e-06 3_[+3(1.52e-05)]_54_[+4(1.27e-05)]_\ 4_[+4(1.27e-05)]_17_[+4(1.27e-05)]_10 chr3R:16611385-16611505 3.32e-02 82_[+2(3.24e-05)]_30 chr4:206439-206559 7.85e-01 120 chr3R:10108498-10108618 9.61e-01 120 chr3L:9340993-9341113 4.55e-01 120 chrX:13304023-13304143 2.81e-04 5_[+4(2.23e-05)]_8_[+4(7.46e-05)]_6_\ [+4(1.27e-05)]_1_[+5(9.61e-06)]_68 chr4:209399-209519 3.95e-01 120 chr3L:1191677-1191797 1.95e-02 24_[+1(1.90e-05)]_88 chr3L:22346695-22346815 1.46e-02 40_[+3(1.52e-05)]_72 chr3L:4426789-4426909 2.96e-01 120 chr2R:23748268-23748388 8.73e-01 120 chr3R:23004312-23004432 2.33e-02 120 chr2R:1071545-1071665 2.58e-01 120 chr3R:19929109-19929229 5.46e-02 62_[+1(5.28e-05)]_50 chr2L:12341790-12341910 1.48e-02 54_[+1(1.90e-05)]_41_[+1(1.90e-05)]_\ 9 chr2R:7889476-7889596 7.46e-02 39_[+5(6.25e-05)]_73 chr2R:22684386-22684506 1.69e-05 24_[+4(2.23e-05)]_15_[+3(2.63e-05)]_\ 65 chr2L:1049528-1049648 1.41e-03 24_[+5(5.29e-05)]_26_[+2(1.87e-05)]_\ 54 chr2L:11475099-11475219 1.73e-02 111_[+2(1.87e-05)]_1 chr2R:24694073-24694193 2.07e-02 66_[+1(1.90e-05)]_46 chrX:14772144-14772264 8.99e-04 40_[+1(1.90e-05)]_53_[+3(1.52e-05)]_\ [+3(1.52e-05)]_3 chr2R:11264021-11264141 2.10e-01 24_[+2(7.12e-05)]_88 chrX:20434059-20434179 2.75e-03 51_[+1(1.90e-05)]_46_[+3(1.52e-05)]_\ 7 chr3R:22751245-22751365 4.75e-01 120 chr3R:27301461-27301581 3.44e-01 120 chr3L:22456061-22456181 2.93e-01 120 chr3L:7815825-7815945 8.87e-03 79_[+1(1.90e-05)]_33 chrX:5895718-5895838 2.07e-02 51_[+4(8.74e-05)]_61 chr2L:3341320-3341440 2.18e-01 32_[+3(4.10e-05)]_80 chr4:415651-415771 1.60e-02 15_[+2(1.87e-05)]_97 chr2R:22993182-22993302 5.72e-03 22_[+2(7.12e-05)]_5_[+2(1.87e-05)]_\ 23_[+2(1.87e-05)]_46 chr3R:30486062-30486182 1.22e-03 45_[+5(4.30e-05)]_51_[+2(1.87e-05)]_\ 8 chr2R:24427602-24427722 1.74e-02 82_[+2(1.87e-05)]_30 chr2R:21547173-21547293 1.02e-01 33_[+3(2.63e-05)]_35_[+3(1.52e-05)]_\ 36 chr3L:21930366-21930486 5.80e-02 61_[+2(1.87e-05)]_51 chr3R:4717178-4717298 8.10e-01 120 chr3R:21126866-21126986 2.90e-02 6_[+4(4.89e-05)]_106 chrX:5766876-5766996 1.14e-02 94_[+2(1.87e-05)]_18 chr3L:21359932-21360052 3.29e-02 44_[+2(1.87e-05)]_46_[+2(3.24e-05)]_\ 14 chrX:16637099-16637219 1.43e-02 56_[+3(1.52e-05)]_8_[+3(2.63e-05)]_\ 40 chrX:1315908-1316028 7.25e-01 120 chr3R:11452175-11452295 1.12e-02 93_[+1(1.90e-05)]_19 chrX:22443204-22443324 2.82e-01 120 chr2R:10424140-10424260 3.45e-02 120 chrX:8399163-8399283 5.51e-04 15_[+4(2.23e-05)]_20_[+4(1.27e-05)]_\ 26_[+4(1.27e-05)]_3_[+5(9.61e-06)]_24 chr2R:24857325-24857445 5.88e-02 120 chrX:9202772-9202892 1.98e-01 2_[+2(7.12e-05)]_110 chr2R:13304198-13304318 7.02e-03 21_[+1(7.91e-05)]_9_[+1(7.91e-05)]_\ 10_[+1(7.91e-05)]_40_[+3(1.52e-05)]_8 chr3R:20781723-20781843 4.62e-03 108_[+4(3.18e-05)]_4 chrX:21083373-21083493 3.38e-01 120 chr3L:2636159-2636279 1.58e-01 4_[+3(8.39e-05)]_108 chr3R:13259251-13259371 2.52e-03 22_[+3(1.52e-05)]_37_[+1(1.90e-05)]_\ 45 chr3R:8126955-8127075 5.73e-01 120 chr3R:26957305-26957425 5.18e-01 120 chr3R:4812921-4813041 5.59e-01 120 chr3R:19638815-19638935 6.77e-02 32_[+1(5.28e-05)]_80 chr3R:6149750-6149870 1.27e-01 22_[+1(1.90e-05)]_90 chr2L:3889734-3889854 4.46e-03 74_[+2(1.87e-05)]_38 chr2R:7806893-7807013 1.01e-04 12_[+3(6.31e-05)]_9_[+4(1.27e-05)]_\ 22_[+5(3.01e-05)]_1_[+4(1.27e-05)]_44 chr3R:12652839-12652959 2.48e-01 87_[+5(6.25e-05)]_25 chr2L:17472582-17472702 9.08e-04 14_[+4(6.18e-05)]_8_[+5(9.61e-06)]_\ 38_[+4(1.27e-05)]_[+4(1.27e-05)]_28 chr3R:11568633-11568753 1.16e-01 33_[+1(1.90e-05)]_79 chr3L:1926302-1926422 1.87e-01 120 chr2L:313538-313658 1.31e-02 40_[+1(1.90e-05)]_72 chr2R:19776469-19776589 9.69e-01 120 chr3L:8071860-8071980 1.51e-01 20_[+1(7.91e-05)]_92 chrX:21351395-21351515 2.13e-02 105_[+4(1.27e-05)]_7 chrX:6660039-6660159 3.23e-03 45_[+2(7.12e-05)]_45_[+3(6.31e-05)]_\ 14 chr2R:8137749-8137869 5.12e-01 120 chr3R:27057978-27058098 1.15e-01 73_[+2(3.24e-05)]_39 chr3L:12008081-12008201 1.00e-01 120 chr3L:1839543-1839663 6.50e-01 120 chr2R:18553697-18553817 7.08e-01 120 chr3R:13379352-13379472 1.69e-02 73_[+3(1.52e-05)]_39 chrM:5711-5831 9.75e-01 120 chr2R:22287411-22287531 2.40e-02 84_[+2(1.87e-05)]_28 chr4:941512-941632 1.47e-02 68_[+2(1.87e-05)]_8_[+2(1.87e-05)]_\ 28 chr2R:13953711-13953831 6.24e-04 1_[+4(1.27e-05)]_72_[+5(3.01e-05)]_\ 31 chr3L:8329161-8329281 5.38e-01 120 chr3R:21256433-21256553 5.40e-04 42_[+4(1.27e-05)]_70 chr2R:10271853-10271973 9.29e-01 120 chr4:467091-467211 5.60e-01 120 chr3L:17739786-17739906 2.64e-02 71_[+5(8.76e-05)]_41 chr3L:8787352-8787472 7.39e-03 41_[+4(7.46e-05)]_1_[+2(7.12e-05)]_\ 45_[+2(1.87e-05)]_9 chrX:1613224-1613344 3.82e-01 120 chr3L:4484892-4485012 4.59e-01 120 chr4:1318936-1319056 9.63e-02 91_[+4(3.18e-05)]_21 chr3R:6286713-6286833 8.58e-01 120 chr3R:12628327-12628447 1.56e-01 120 chr2R:16579546-16579666 5.00e-01 120 chr3L:4840708-4840828 1.23e-01 72_[+1(1.90e-05)]_40 chr2L:5292002-5292122 8.36e-01 120 chr3L:10644822-10644942 3.24e-02 29_[+2(1.87e-05)]_83 chrX:1056703-1056823 3.30e-05 7_[+4(8.74e-05)]_23_[+1(1.90e-05)]_\ 38_[+2(1.87e-05)]_28 chr3R:29749551-29749671 2.24e-04 85_[+4(1.27e-05)]_3_[+5(8.76e-05)]_\ 4_[+5(9.61e-06)]_4 chr3R:5594917-5595037 4.52e-02 108_[+2(1.87e-05)]_4 chr3L:17898730-17898850 7.22e-02 120 chr2L:9120607-9120727 1.38e-04 12_[+5(4.30e-05)]_58_[+1(1.90e-05)]_\ 34 chr2L:138312-138432 2.03e-03 14_[+3(8.39e-05)]_98 chrM:8047-8167 5.27e-01 120 chr2R:7098334-7098454 2.21e-01 120 chr3L:16875619-16875739 1.61e-05 26_[+4(1.27e-05)]_16_[+2(3.24e-05)]_\ 38_[+1(3.32e-05)]_16 chr2R:13580851-13580971 1.00e-03 29_[+1(1.90e-05)]_13_[+2(3.24e-05)]_\ 62 chrX:18520498-18520618 5.31e-04 28_[+5(5.29e-05)]_16_[+1(1.90e-05)]_\ 60 chr3R:20306010-20306130 7.31e-01 120 chr2R:11379725-11379845 4.03e-03 75_[+1(1.90e-05)]_37 chr2L:6717095-6717215 2.47e-02 102_[+1(1.90e-05)]_10 chr2L:5004215-5004335 7.14e-01 120 chr3R:5268607-5268727 1.16e-02 95_[+1(9.28e-05)]_17 chrX:20251774-20251894 2.29e-05 33_[+3(1.52e-05)]_[+3(6.31e-05)]_34_\ [+4(1.27e-05)]_29 chr3L:7143406-7143526 3.66e-03 19_[+2(9.67e-05)]_45_[+1(1.90e-05)]_\ 40 chr2L:19399451-19399571 4.85e-02 76_[+1(5.28e-05)]_36 chr3R:25495186-25495306 2.55e-01 120 chr3L:1850683-1850803 3.38e-01 71_[+2(9.67e-05)]_41 chr2R:19941723-19941843 6.51e-04 7_[+3(4.10e-05)]_65_[+1(1.90e-05)]_\ 32 chr3L:21498704-21498824 6.35e-01 120 chrX:16586697-16586817 2.36e-04 29_[+5(9.61e-06)]_47_[+5(9.61e-06)]_\ 28 chrX:9675040-9675160 1.16e-03 58_[+4(2.23e-05)]_41_[+4(3.18e-05)]_\ 5 chr3L:16470213-16470333 3.69e-03 [+1(3.32e-05)]_112 chr2L:18455862-18455982 3.14e-01 120 chrX:15933791-15933911 7.03e-01 120 chrX:4214498-4214618 1.51e-01 120 chr3L:20221050-20221170 2.68e-02 74_[+1(1.90e-05)]_38 chr2L:10260112-10260232 2.57e-02 39_[+3(2.63e-05)]_2_[+3(1.52e-05)]_\ 28_[+3(1.52e-05)]_[+3(1.52e-05)]_19 chrX:19579039-19579159 2.00e-01 120 chr3L:505770-505890 1.21e-01 73_[+1(7.91e-05)]_39 chr2L:548208-548328 4.22e-01 120 chr3R:18249376-18249496 1.75e-02 9_[+3(1.52e-05)]_94_[+3(4.10e-05)]_\ 1 chr2R:24757151-24757271 6.41e-03 73_[+1(1.90e-05)]_39 chr2R:13403797-13403917 7.16e-04 20_[+1(1.90e-05)]_46_[+2(1.87e-05)]_\ 38 chrX:2645657-2645777 1.14e-02 57_[+2(1.87e-05)]_55 chr2R:17871441-17871561 1.48e-03 8_[+4(4.89e-05)]_65_[+3(1.52e-05)]_\ [+3(6.31e-05)]_6_[+3(6.31e-05)]_9 chr2R:7063067-7063187 5.79e-03 45_[+2(1.87e-05)]_67 chr2R:18372634-18372754 1.18e-02 40_[+2(3.24e-05)]_72 chr2R:15781239-15781359 7.40e-04 43_[+2(1.87e-05)]_26_[+1(1.90e-05)]_\ 35 chr3R:13360238-13360358 8.59e-05 24_[+5(6.25e-05)]_24_[+1(1.90e-05)]_\ 56 chr2R:20230947-20231067 3.05e-02 37_[+1(1.90e-05)]_75 chrX:19637961-19638081 3.72e-02 [+3(1.52e-05)]_21_[+3(1.52e-05)]_\ [+3(6.31e-05)]_8_[+3(6.31e-05)]_59 chr3R:21223949-21224069 4.22e-02 120 chr3L:1350005-1350125 7.24e-03 14_[+4(2.23e-05)]_98 chrX:9110065-9110185 6.40e-01 120 chr3R:14823072-14823192 1.60e-02 21_[+2(9.67e-05)]_91 chr3R:15688557-15688677 4.13e-02 34_[+2(1.87e-05)]_78 chr3L:16335008-16335128 1.40e-01 120 chr3L:5534436-5534556 3.36e-01 120 chr3R:18507864-18507984 2.51e-03 29_[+2(1.87e-05)]_26_[+1(3.32e-05)]_\ 49 chr2L:18298122-18298242 2.36e-02 120 chrX:2643187-2643307 1.02e-03 94_[+4(1.27e-05)]_[+4(1.27e-05)]_10 chr3R:7200010-7200130 8.01e-02 76_[+1(3.32e-05)]_36 chr2R:21199566-21199686 6.17e-02 39_[+1(3.32e-05)]_50_[+1(1.90e-05)]_\ 15 chr3R:25754060-25754180 1.67e-04 11_[+5(1.68e-05)]_22_[+1(1.90e-05)]_\ 71 chr2L:8366354-8366474 7.26e-01 120 chr3L:18949245-18949365 2.14e-02 120 chr2R:21298714-21298834 4.43e-02 24_[+1(1.90e-05)]_88 chr2L:7423977-7424097 1.07e-02 76_[+4(1.27e-05)]_36 chrX:17077387-17077507 4.60e-02 120 chr3L:9455717-9455837 3.42e-01 120 chrX:11872780-11872900 2.39e-01 120 chr2R:17470007-17470127 3.93e-03 31_[+5(9.61e-06)]_73_[+4(7.46e-05)] chr3R:24876051-24876171 9.51e-03 41_[+3(2.63e-05)]_16_[+3(2.63e-05)]_\ 10_[+3(6.31e-05)]_2_[+3(1.52e-05)]_19 chrX:18137407-18137527 1.11e-01 1_[+3(1.52e-05)]_111 chr3L:13454854-13454974 6.12e-02 35_[+2(7.12e-05)]_77 chr2L:23174694-23174814 2.27e-01 120 chr3L:16291831-16291951 1.70e-02 120 chrX:19522557-19522677 5.30e-03 50_[+4(6.18e-05)]_62 chr2R:2848497-2848617 4.36e-01 120 chrX:19578353-19578473 1.74e-01 120 chr3R:17615191-17615311 1.04e-01 120 chr3R:18798861-18798981 3.34e-02 120 chr3R:20154811-20154931 1.60e-01 3_[+1(1.90e-05)]_109 chr4:467438-467558 7.60e-01 120 chr3R:5648048-5648168 1.83e-02 52_[+3(1.52e-05)]_60 chr2R:7139742-7139862 1.83e-03 59_[+2(1.87e-05)]_53 chrX:11147676-11147796 3.40e-01 120 chr3L:9497626-9497746 6.71e-01 120 chr3L:626372-626492 5.55e-04 24_[+5(9.61e-06)]_88 chr2L:1644495-1644615 6.18e-05 17_[+3(6.31e-05)]_66_[+5(3.01e-05)]_\ 21 chrX:617253-617373 1.38e-02 71_[+3(6.31e-05)]_41 chr2L:2955789-2955909 5.64e-02 45_[+2(1.87e-05)]_67 chrX:23097206-23097326 6.83e-01 120 chr3L:25108842-25108962 7.72e-01 120 chrM:9495-9615 9.87e-01 120 chr2R:16689554-16689674 4.84e-02 120 chr3L:4219444-4219564 3.74e-02 17_[+1(1.90e-05)]_95 chrX:13134961-13135081 8.51e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************