******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Mnt.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:8725378-8725498 1.0000 120 chr2R:24014359-24014479 1.0000 120 chrX:15450417-15450537 1.0000 120 chr3R:29049445-29049565 1.0000 120 chr3R:12689234-12689354 1.0000 120 chrX:9556532-9556652 1.0000 120 chrX:11349001-11349121 1.0000 120 chrX:22481225-22481345 1.0000 120 chr3L:1549920-1550040 1.0000 120 chr3L:17054055-17054175 1.0000 120 chr3L:5777248-5777368 1.0000 120 chr2L:2010494-2010614 1.0000 120 chr3R:16272334-16272454 1.0000 120 chr2R:14171145-14171265 1.0000 120 chr3L:21501316-21501436 1.0000 120 chr2R:17420368-17420488 1.0000 120 chr2R:23933268-23933388 1.0000 120 chrX:12905796-12905916 1.0000 120 chrX:3370740-3370860 1.0000 120 chr2L:10510295-10510415 1.0000 120 chrX:1232678-1232798 1.0000 120 chrX:13741518-13741638 1.0000 120 chr3R:9631620-9631740 1.0000 120 chr2L:21156748-21156868 1.0000 120 chrX:16791186-16791306 1.0000 120 chr2L:2873892-2874012 1.0000 120 chr2R:14275141-14275261 1.0000 120 chr3R:4649996-4650116 1.0000 120 chr2R:16127365-16127485 1.0000 120 chr3L:17238319-17238439 1.0000 120 chr2R:12170633-12170753 1.0000 120 chr3L:17804654-17804774 1.0000 120 chr3L:4406023-4406143 1.0000 120 chrX:841252-841372 1.0000 120 chr3R:13780909-13781029 1.0000 120 chrX:8059778-8059898 1.0000 120 chr3L:16157064-16157184 1.0000 120 chr2R:9927031-9927151 1.0000 120 chr3R:22446594-22446714 1.0000 120 chrX:10845128-10845248 1.0000 120 chr3R:7947474-7947594 1.0000 120 chr2L:18698671-18698791 1.0000 120 chr3L:9624164-9624284 1.0000 120 chr2L:4968929-4969049 1.0000 120 chrX:17883123-17883243 1.0000 120 chrX:1353956-1354076 1.0000 120 chrX:3530849-3530969 1.0000 120 chrX:654470-654590 1.0000 120 chr2R:15984474-15984594 1.0000 120 chr3R:8712234-8712354 1.0000 120 chrX:8121073-8121193 1.0000 120 chr3L:6998830-6998950 1.0000 120 chr3L:4185526-4185646 1.0000 120 chr2L:13207169-13207289 1.0000 120 chrX:8116123-8116243 1.0000 120 chrX:15733672-15733792 1.0000 120 chr2R:14621911-14622031 1.0000 120 chrX:8117007-8117127 1.0000 120 chr2R:5754494-5754614 1.0000 120 chrX:637077-637197 1.0000 120 chr2L:21178983-21179103 1.0000 120 chrX:10083135-10083255 1.0000 120 chr2L:9333592-9333712 1.0000 120 chr2R:17870999-17871119 1.0000 120 chr3R:9950141-9950261 1.0000 120 chr2R:23672113-23672233 1.0000 120 chrX:13680346-13680466 1.0000 120 chr3R:27947999-27948119 1.0000 120 chr2R:16347450-16347570 1.0000 120 chr2R:10875714-10875834 1.0000 120 chr3L:4253746-4253866 1.0000 120 chrX:11108905-11109025 1.0000 120 chr3R:15262824-15262944 1.0000 120 chr2L:18698870-18698990 1.0000 120 chrX:13624372-13624492 1.0000 120 chr3R:5843700-5843820 1.0000 120 chrX:13718051-13718171 1.0000 120 chr3R:24566882-24567002 1.0000 120 chrX:9600599-9600719 1.0000 120 chr3R:32052616-32052736 1.0000 120 chr3L:211274-211394 1.0000 120 chr3L:3309109-3309229 1.0000 120 chr2L:6614352-6614472 1.0000 120 chrX:17163913-17164033 1.0000 120 chrX:2142703-2142823 1.0000 120 chr3R:4428712-4428832 1.0000 120 chr2L:7203720-7203840 1.0000 120 chrX:2286412-2286532 1.0000 120 chrX:6352629-6352749 1.0000 120 chr3L:12537234-12537354 1.0000 120 chr3R:11412558-11412678 1.0000 120 chr2R:17518156-17518276 1.0000 120 chr2R:23939695-23939815 1.0000 120 chr3R:24319753-24319873 1.0000 120 chrX:11147823-11147943 1.0000 120 chr3R:9011874-9011994 1.0000 120 chrX:9201208-9201328 1.0000 120 chr3L:12519457-12519577 1.0000 120 chrX:16633717-16633837 1.0000 120 chr3R:11231865-11231985 1.0000 120 chrX:1927949-1928069 1.0000 120 chr3L:9689950-9690070 1.0000 120 chr2R:21076841-21076961 1.0000 120 chr3R:8670201-8670321 1.0000 120 chr2L:9893383-9893503 1.0000 120 chrX:2339591-2339711 1.0000 120 chr2R:17048944-17049064 1.0000 120 chr3L:21172993-21173113 1.0000 120 chrX:9103377-9103497 1.0000 120 chrX:625217-625337 1.0000 120 chr2L:3480053-3480173 1.0000 120 chr2R:9601801-9601921 1.0000 120 chrX:8901634-8901754 1.0000 120 chr3L:20387437-20387557 1.0000 120 chr3R:13032423-13032543 1.0000 120 chr3L:8297665-8297785 1.0000 120 chr2R:21295988-21296108 1.0000 120 chrX:17302609-17302729 1.0000 120 chr3R:7947675-7947795 1.0000 120 chr2R:17593156-17593276 1.0000 120 chr2R:14601123-14601243 1.0000 120 chr3L:7855458-7855578 1.0000 120 chrX:3440783-3440903 1.0000 120 chrX:5916156-5916276 1.0000 120 chr3R:29067191-29067311 1.0000 120 chr2R:19357115-19357235 1.0000 120 chr3R:22583175-22583295 1.0000 120 chr2R:22483252-22483372 1.0000 120 chrX:16599196-16599316 1.0000 120 chrX:12667787-12667907 1.0000 120 chrX:4319395-4319515 1.0000 120 chr2R:24668238-24668358 1.0000 120 chr2R:17435803-17435923 1.0000 120 chr3R:17060953-17061073 1.0000 120 chr2R:14870623-14870743 1.0000 120 chr3L:2599268-2599388 1.0000 120 chr2L:1987545-1987665 1.0000 120 chr2R:20654930-20655050 1.0000 120 chr2L:142467-142587 1.0000 120 chrX:19616135-19616255 1.0000 120 chr2R:12279537-12279657 1.0000 120 chr2L:8955739-8955859 1.0000 120 chr3L:5643846-5643966 1.0000 120 chrX:5317352-5317472 1.0000 120 chr3L:11272364-11272484 1.0000 120 chrX:13321299-13321419 1.0000 120 chr2R:21097254-21097374 1.0000 120 chr2L:7451090-7451210 1.0000 120 chrX:18789344-18789464 1.0000 120 chr2L:9699734-9699854 1.0000 120 chrX:1928150-1928270 1.0000 120 chr2R:20278850-20278970 1.0000 120 chrX:6743492-6743612 1.0000 120 chr3R:9710393-9710513 1.0000 120 chr3L:9095763-9095883 1.0000 120 chr3L:22738314-22738434 1.0000 120 chr2L:5724891-5725011 1.0000 120 chrX:16793275-16793395 1.0000 120 chr2R:14575717-14575837 1.0000 120 chr2L:20084207-20084327 1.0000 120 chr2R:12530450-12530570 1.0000 120 chr3R:20784749-20784869 1.0000 120 chr2R:9190900-9191020 1.0000 120 chr3R:10084323-10084443 1.0000 120 chr2L:5303385-5303505 1.0000 120 chr2L:7222981-7223101 1.0000 120 chr2R:16641001-16641121 1.0000 120 chr3R:10093894-10094014 1.0000 120 chrX:19578157-19578277 1.0000 120 chrX:6968708-6968828 1.0000 120 chr2R:22180428-22180548 1.0000 120 chr3R:20592609-20592729 1.0000 120 chr3R:8358128-8358248 1.0000 120 chr3R:7790647-7790767 1.0000 120 chr2R:6644001-6644121 1.0000 120 chr2R:21624945-21625065 1.0000 120 chr3R:24038831-24038951 1.0000 120 chr3L:21434155-21434275 1.0000 120 chrX:6684248-6684368 1.0000 120 chr3L:15494084-15494204 1.0000 120 chr3R:13017891-13018011 1.0000 120 chr2L:12207682-12207802 1.0000 120 chrX:15762885-15763005 1.0000 120 chr2R:9137568-9137688 1.0000 120 chr3L:3472057-3472177 1.0000 120 chrX:19240403-19240523 1.0000 120 chrX:20391357-20391477 1.0000 120 chr3R:27608228-27608348 1.0000 120 chrX:4617529-4617649 1.0000 120 chr2L:2979236-2979356 1.0000 120 chr3L:16730772-16730892 1.0000 120 chrX:17579852-17579972 1.0000 120 chr2R:10052525-10052645 1.0000 120 chr3L:11689974-11690094 1.0000 120 chrX:3696879-3696999 1.0000 120 chr2R:9745285-9745405 1.0000 120 chr3L:19263958-19264078 1.0000 120 chr3R:31736953-31737073 1.0000 120 chrX:16599397-16599517 1.0000 120 chr2R:6050772-6050892 1.0000 120 chr3L:7775501-7775621 1.0000 120 chr2L:16530172-16530292 1.0000 120 chr3L:15501704-15501824 1.0000 120 chr3R:14020746-14020866 1.0000 120 chr3L:20474454-20474574 1.0000 120 chr3L:21972767-21972887 1.0000 120 chr3L:21335155-21335275 1.0000 120 chrX:2585915-2586035 1.0000 120 chr3L:7833826-7833946 1.0000 120 chr2R:10108554-10108674 1.0000 120 chr2L:8707758-8707878 1.0000 120 chr2R:18514368-18514488 1.0000 120 chr3R:13382680-13382800 1.0000 120 chr3L:7835238-7835358 1.0000 120 chr2R:23872181-23872301 1.0000 120 chr3R:15278574-15278694 1.0000 120 chr3R:12441365-12441485 1.0000 120 chr3R:23773997-23774117 1.0000 120 chr3L:8576014-8576134 1.0000 120 chr2L:1102536-1102656 1.0000 120 chr2R:16000169-16000289 1.0000 120 chr3L:7773653-7773773 1.0000 120 chrX:1843019-1843139 1.0000 120 chr3R:19641241-19641361 1.0000 120 chr2L:3507267-3507387 1.0000 120 chr2L:16316014-16316134 1.0000 120 chr3R:22584697-22584817 1.0000 120 chr3R:15346116-15346236 1.0000 120 chr3R:8523825-8523945 1.0000 120 chr3R:15198655-15198775 1.0000 120 chr2R:14360213-14360333 1.0000 120 chr3R:12456462-12456582 1.0000 120 chr2R:21708431-21708551 1.0000 120 chr3R:29230819-29230939 1.0000 120 chr3L:20524552-20524672 1.0000 120 chr3R:5364807-5364927 1.0000 120 chr2R:21701384-21701504 1.0000 120 chr2L:8989089-8989209 1.0000 120 chrX:22456261-22456381 1.0000 120 chrX:12716053-12716173 1.0000 120 chrX:3968440-3968560 1.0000 120 chr3R:6456394-6456514 1.0000 120 chr2L:6472086-6472206 1.0000 120 chrX:9164288-9164408 1.0000 120 chr2L:20098040-20098160 1.0000 120 chr3R:10394544-10394664 1.0000 120 chr2R:18627913-18628033 1.0000 120 chrX:11149386-11149506 1.0000 120 chr3R:27926844-27926964 1.0000 120 chr2L:12096437-12096557 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Mnt/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Mnt.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.26 C 0.237 G 0.24 T 0.263 Background letter frequencies (from file dataset with add-one prior applied): A 0.26 C 0.237 G 0.24 T 0.263 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RCACGTGY MEME-1 width = 8 sites = 210 llr = 1458 E-value = 2.1e-130 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCACGTGY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 319:2::: pos.-specific C 29:7:::4 probability G 5:1:7:a2 matrix T :::21a:4 bits 2.1 * 1.9 * * 1.7 * ** 1.5 ** ** Relative 1.2 ** ** Entropy 1.0 ****** (10.0 bits) 0.8 ****** 0.6 ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCACGTGC consensus A TA T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACGTGY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10108554-10108674 53 1.26e-05 CATTTATAAT GCACGTGC GGAAATCGGT chr2R:6644001-6644121 2 1.26e-05 A GCACGTGC TAGAGGAGCT chr2R:9190900-9191020 68 1.26e-05 GCATTTCCCC GCACGTGC CGAGTGCTCT chrX:4319395-4319515 82 1.26e-05 GTAACAGTAG GCACGTGC AGGAACGTTT chr2R:5754494-5754614 67 1.26e-05 TTTCAAAGCC GCACGTGC TAAATTTAAC chrX:8121073-8121193 35 1.26e-05 ACAACAACGT GCACGTGC TGCTTCTTCT chrX:1353956-1354076 94 1.26e-05 GTGACGCGCC GCACGTGC TTACGTTTTG chr3L:17804654-17804774 26 1.26e-05 TGAAAACAAC GCACGTGC AATTGTTTTG chr2L:12096437-12096557 22 2.65e-05 AATGCGAGCG GCACGTGT TGATATTCTT chr3L:7833826-7833946 2 2.65e-05 A GCACGTGT TGCGGACACA chr3L:16730772-16730892 6 2.65e-05 GAAAT GCACGTGT TGCGGCTGCT chr3L:22738314-22738434 48 2.65e-05 CAACTGTGTG GCACGTGT TTTTCGCGAG chr2L:9699734-9699854 84 2.65e-05 TAACGCTAAC GCACGTGT TTGAAAGCGA chrX:18789344-18789464 36 2.65e-05 CCCACAGGCA GCACGTGT GTGGGCGCTC chrX:5317352-5317472 86 2.65e-05 GTTTGTTTAC GCACGTGT TGTGTTTGAT chr2R:22483252-22483372 82 2.65e-05 AATATGTTTC GCACGTGT TGCATTTGAA chr2R:14601123-14601243 58 2.65e-05 CAACAGCCGC GCACGTGT GTGGCTATTA chrX:8901634-8901754 95 2.65e-05 TGTTGAATTT GCACGTGT TTCAAAGTAA chr3L:12537234-12537354 41 2.65e-05 TTTTTTTGCC GCACGTGT AGCGTTTATA chr3R:5843700-5843820 60 2.65e-05 ATAAGATAAT GCACGTGT AGGAGCACTC chr2R:10875714-10875834 67 2.65e-05 TGTTTGAACT GCACGTGT TTATCAATTC chr3R:9950141-9950261 103 2.65e-05 GGGTGCAACG GCACGTGT TCGCACACCA chrX:637077-637197 99 2.65e-05 CGCTCTATAT GCACGTGT GTGAGACGCA chrX:15733672-15733792 72 2.65e-05 TGCGGCAAAT GCACGTGT AGTTGTTGCT chrX:8116123-8116243 109 2.65e-05 TAGGCAGGCA GCACGTGT TGCT chr2L:13207169-13207289 29 2.65e-05 CCAGGCCAGG GCACGTGT GCCTATAACC chr3L:9624164-9624284 90 2.65e-05 CATATCTAAT GCACGTGT TGTTTCAATT chr2R:9927031-9927151 85 2.65e-05 CTTCACATGC GCACGTGT GATAAGAAAG chr2L:2873892-2874012 22 2.65e-05 CTACTGAAAC GCACGTGT TGGTTCCGAT chrX:3370740-3370860 67 2.65e-05 CATTGTTGCT GCACGTGT AGACCGTTAA chr3R:16272334-16272454 44 2.65e-05 AGCTAAACTC GCACGTGT TGCAGATGCG chr2L:16316014-16316134 5 4.02e-05 GGCT ACACGTGC TTTTGATTGA chr2L:16530172-16530292 108 4.02e-05 GCACCCAGGG ACACGTGC GCTTT chr3R:31736953-31737073 109 4.02e-05 AACAGCTGCA ACACGTGC GGTT chr3L:15494084-15494204 47 4.02e-05 TTGACTTGCG ACACGTGC TCATGGAGCT chrX:19578157-19578277 52 4.02e-05 TAGGGTATGC ACACGTGC TGCAGGGTAA chrX:6743492-6743612 93 4.02e-05 GGCAATCAAA ACACGTGC AAAATGAGCG chr2R:21097254-21097374 8 4.02e-05 CGCAAAA ACACGTGC GCGTTCCGAT chrX:19616135-19616255 71 4.02e-05 GGTGGAAACA ACACGTGC ACTCGTGTTT chr3R:22583175-22583295 23 4.02e-05 AATGCAGTCA ACACGTGC CGTCGCGCGT chrX:3440783-3440903 77 4.02e-05 ACGCGTTGTT ACACGTGC GAGACCTTTG chr2R:21295988-21296108 82 4.02e-05 atatacagat acaCGTGC GCTCAGCTGT chr2R:16347450-16347570 13 4.02e-05 AAAAAAATAT ACACGTGC AGCTGGGCGG chrX:10083135-10083255 50 4.02e-05 ACTAATCGCG ACACGTGC AGAAATTGTT chrX:17883123-17883243 60 4.02e-05 TCCGCTCGCC ACACGTgc ttgctagtca chr2L:4968929-4969049 106 4.02e-05 ATTGATTCCA ACACGTGC GGTTCAA chr2L:18698671-18698791 63 4.02e-05 GAAGAAGACA ACACGTGC GTGCATTCAA chr3R:22446594-22446714 28 4.02e-05 ACAGCCGCAC ACACGTGC TGGCAGAGAA chr2L:2010494-2010614 34 4.02e-05 CTTTCTTAAC ACACGTGC TGCAAAAAAA chr2L:8707758-8707878 75 5.53e-05 TACATGCAGC ACACGTGT GTCTGGGCGT chr3R:20592609-20592729 26 5.53e-05 AGGAATTCAC ACACGTGT GGTTGTGCTT chr2R:23939695-23939815 21 5.53e-05 TCTTTCGCAC ACACGTGT GGATCAACAA chr3R:13780909-13781029 62 5.53e-05 ACTCAATGCA ACACGTGT GGACGATAAA chr3L:4406023-4406143 26 5.53e-05 AAAAACGTAA ACACGTGT GTTTTTGCTA chr2R:23933268-23933388 23 5.53e-05 TGAGATTCAC ACACGTGT CACTTCGCAC chr3R:27926844-27926964 5 6.77e-05 TCGT CCACGTGC TAACTGGCAC chr3R:22584697-22584817 98 6.77e-05 TATTGTTGCT CCACGTGC GGCGATTTTT chr3L:7835238-7835358 20 6.77e-05 CGTTTCGCTA CCACGTGC ACCGGCGGTC chr2R:18514368-18514488 4 6.77e-05 AAG CCACGTGC TCCTGCAGCT chr3L:15501704-15501824 50 6.77e-05 CTCGCCCTCT CCACGTGC TCGGCATAAA chrX:3696879-3696999 32 6.77e-05 GTTGCTGCAG CCACGTGC GCTTTCGTCA chr3R:32052616-32052736 28 6.77e-05 TCCCTCTTTT CCACGTGC ATTTTATTGA chrX:9600599-9600719 53 6.77e-05 CACAGCCAGC CCACGTGC TTGCATATAC chrX:10845128-10845248 90 6.77e-05 TTGTGTTGCA CCACGTGC GGCTGGATAG chrX:8059778-8059898 61 6.77e-05 GGGGTAAACG CCACGTGC GCTGCACTTT chr2R:18627913-18628033 39 9.43e-05 CGGTCTCTCT CCACGTGT CAGTCAGTTC chrX:3968440-3968560 18 9.43e-05 CGCCGAGATA GCACGTGG TATTGGGACT chrX:1843019-1843139 13 9.43e-05 GTGGGGGGGC GCACGtgg tcgagacctg chrX:20391357-20391477 104 9.43e-05 GTCACACTGA GCACGTGG AGCAGACAA chrX:15762885-15763005 23 9.43e-05 GTTCCGCCAC GCACGTGG GTCACACTGC chr3R:20784749-20784869 19 9.43e-05 AATCTTTCGG CCACGTGT CAAGCCAATG chr2L:20084207-20084327 52 9.43e-05 AATATCTTTA GCACGTGG ATTCAAGCCG chr2R:24668238-24668358 66 9.43e-05 AGTTCCATTT GCACGTGG AACTCTTGAT chr3L:21172993-21173113 24 9.43e-05 GGAACTAGTT GCACGTGG AAATAAGCTC chr3R:8670201-8670321 60 9.43e-05 AGTTGCCAAC CCACGTGT TGTCCAGTAG chr3R:4428712-4428832 28 9.43e-05 TTTGCCCCAA CCACGTGT ATGTGTATGT chrX:3530849-3530969 66 9.43e-05 CACATGGCGG GCACGTGG TGGAACGCAT chr2R:16127365-16127485 101 9.43e-05 CAGCTGCAGT GCACGTGG TGTTTTGGGT chr3R:9631620-9631740 48 9.43e-05 CGTGTCGAGC CCACGTGT TGAGCCAATC chr2R:21708431-21708551 55 1.08e-04 TGATGCGGCT GCATGTGC GCCAAAAAGG chr2L:2979236-2979356 61 1.08e-04 AGCCGCAGAT GCATGTGC GTCGGGTCAA chr3R:27608228-27608348 74 1.08e-04 CAACCGCGCT GCATGTGC GTTCCCCGTT chr2R:9137568-9137688 1 1.08e-04 . GCATGTGC ACGGAGGAGC chrX:11108905-11109025 74 1.08e-04 AGACGGCATT GCATGTGC TGCTACTGCT chr2R:24014359-24014479 58 1.08e-04 atctgcatct gcatgtgc atAGCCATGT chr3R:10093894-10094014 110 1.38e-04 AACAAGACAC ACACGTGG CCA chr2R:14870623-14870743 59 1.38e-04 GCATATTTTC GCATGTGT GGCCTGCCCG chr2R:17435803-17435923 92 1.38e-04 TTAGTGGGGC GCATGTGT GTCTGTGTGT chr2L:7203720-7203840 63 1.38e-04 GACAGGGGTA GCATGTGT AACGCACTAC chr3R:15262824-15262944 11 1.38e-04 CCTCTCAGAT GCATGTGT GTATATAGGA chr2R:17870999-17871119 103 1.38e-04 GCACACAGAG GCATGTGT GTAGAATTTG chr2L:21178983-21179103 109 1.38e-04 GCACACTTAC ACACGTGG AGCC chr2R:14621911-14622031 60 1.38e-04 ATGTGAAAAA ACACGTGG CGAGCGGTGA chr3R:4649996-4650116 40 1.38e-04 CCCGACATTC GCATGTGT GCGAGGGAGA chr2L:10510295-10510415 37 1.38e-04 ATCCGTACTC ACACGTGG ACAACTGGGC chr3R:15278574-15278694 76 1.51e-04 TGACATTTTG GCACATGC GGTTACACTG chr2R:6050772-6050892 31 1.51e-04 CTGGTGGACA GCACATGC GCAGATTGGA chr3L:20387437-20387557 71 1.51e-04 CGAGCGCGGC GCACATGC GTTCAGTTCG chrX:1927949-1928069 4 1.51e-04 GGA GCACATGC TCCAAACGGA chrX:12905796-12905916 46 1.51e-04 ACGGTGAATC GCACATGC AGTTATTCCA chr3L:8725378-8725498 58 1.51e-04 TAAAGCATTT GCACATGC TGCTCGCCCG chrX:11149386-11149506 51 1.79e-04 ACGAGAACGA GCACATGT ATTCATCTAT chr2L:20098040-20098160 68 1.79e-04 CCTTGCGTGT GCACATGT TTTTGGTCCC chr3R:29230819-29230939 38 1.79e-04 CTAGACACCT GCACATGT TACAAACAAA chr3R:19641241-19641361 108 1.79e-04 AGAGTTTTGA GCACATGT TTTTC chr3R:14020746-14020866 40 1.79e-04 TTACTATAGT GCACATGT GCGCCCTGCT chr2R:19357115-19357235 79 1.79e-04 CCGTTTTATG GCACATGT TTTCCACGTT chr3R:13032423-13032543 6 1.79e-04 TCCAC GCACATGT AGGCGATCCT chr2L:3480053-3480173 65 1.79e-04 AGTGTGCTGA GCACATGT TCGTTCAGAT chrX:2339591-2339711 91 1.79e-04 GTTCGATTTC CCACGTGG CCGCTATTTA chr2R:17518156-17518276 77 1.79e-04 ACACTGCGCA GCACATGT GCGAGTAGTT chrX:8117007-8117127 55 1.79e-04 AGTTTGGAGC GCACATGT TTTGATTGTT chr2R:14275141-14275261 39 1.79e-04 ACAGCCGTGC GCACATGT ATTTGTTTAC chr3L:21501316-21501436 7 1.79e-04 AAGGAA GCACATGT GATTAGAGAT chr3R:29049445-29049565 56 1.79e-04 AGCTAGCAGT GCACATGT TGCCGACTAG chrX:15450417-15450537 101 1.79e-04 CTATTCATGA GCACATGT TTCTGAGGTT chr2R:23872181-23872301 30 1.94e-04 GGAAATAGAC ACATGTGC TTTACATTCG chr3L:21335155-21335275 90 1.94e-04 AATCGACAGA ACATGTGC TCTAGCTCCA chr3R:10084323-10084443 44 1.94e-04 GAAGAGAATC ACATGTGC CTTTCGGGTT chr2R:12530450-12530570 110 1.94e-04 TATTCCATCC ACATGTGC CAA chrX:16793275-16793395 63 1.94e-04 TCATTAATCA ACATGTGC GTACAGGCTC chr2R:17593156-17593276 101 1.94e-04 agtgagcgag ACATGTGC GTGTGAGGTG chrX:17163913-17164033 52 1.94e-04 TCTGCTGCCA ACATGTGC AAAACTCACA chrX:13680346-13680466 75 1.94e-04 tGAGCAGCTG ACATGTGC GGTGGGCGAT chr3L:5777248-5777368 57 1.94e-04 TACGTTTTCA ACATGTGC GAGCGGCCAG chrX:11349001-11349121 104 1.94e-04 TTGGCACTGT ACATGTGC ATTCAATAT chr3R:12456462-12456582 64 2.39e-04 ATCGATAGTA CCATGTGC AACTATCGGT chr3L:21972767-21972887 18 2.39e-04 GATACACCGA ACACATGC CTTTAGTAAT chr3R:7947675-7947795 51 2.39e-04 TGTGAGTTTC CCATGTGC TCAAAGACGA chr2R:9601801-9601921 67 2.39e-04 TGATAAGAGC CCATGTGC GTGGTCAACT chrX:11147823-11147943 20 2.39e-04 atacgcaccc acacatgc acacgcacac chrX:841252-841372 112 2.39e-04 CTGCCAATTG CCATGTGC T chrX:13741518-13741638 49 2.39e-04 ACTGGAATCA CCATGTGC ACTCTGAGTG chrX:12716053-12716173 92 2.85e-04 TGTTTCTACG CCATGTGT TTGCCCGTTA chr3L:8576014-8576134 84 2.85e-04 AAGTGGGCGG GCATGTGG CCAAACAAGC chr2L:12207682-12207802 68 2.85e-04 TCAATGCCGA GCATGTGG TTGGTTTCGT chr3L:21434155-21434275 49 2.85e-04 CCTGAGTGCT CCATGTGT GTGCGTGTTG chr3L:12519457-12519577 89 2.85e-04 accgaaccgG CCATGTGT TAGGCTTTGT chrX:22481225-22481345 64 2.85e-04 ACGAAAGCAA GCATGTGG AAGAGAAACA chr3R:10394544-10394664 15 3.27e-04 ACGACACTTG GCACATGG GCTAATTATC chr3R:27947999-27948119 75 3.27e-04 ACAAGTCCAC CCACATGT GGGTGCGGAA chr3L:17238319-17238439 76 3.27e-04 TTTACCGGCT GCACATGG CGCATGTACT chrX:1232678-1232798 61 3.27e-04 CACATGGAGC GCACATGG CAGGAACGAA chrX:9556532-9556652 27 3.27e-04 AAACTTATCG GCACATGG AGGAGCTGGC chrX:19240403-19240523 66 3.43e-04 CAGCGTGGTT ACATGTGG CTCTGGAGTG chr2R:12279537-12279657 42 3.72e-04 ACGAGGTCTG GCATATGC CGCGTTGAAT chr3R:15346116-15346236 72 4.33e-04 CCAATGGGCA ACACATGG CCAATCGAAT chr3R:13017891-13018011 36 4.33e-04 ACAATACGTG ACACATGG CTGATGGGAA chr3R:8712234-8712354 110 4.33e-04 AGCGCTTATC GCACTTGT GGC chr3R:17060953-17061073 77 4.58e-04 AACTGTATGG CCACATGG ATCGCCGTTC chrX:17302609-17302729 100 4.58e-04 CTGTGTGTGC GCGCGTGC TTGCGAGTAT chr3L:9689950-9690070 45 4.58e-04 cacacacaga ccacaTGG CGTATGCGCA chr2R:23672113-23672233 54 4.58e-04 GCGATCTCAG CCACATGG CTGTTACGTC chr3L:4185526-4185646 99 4.58e-04 AAGTCGGCCT CCACATGG CCAAGAGTGC chrX:22456261-22456381 106 5.02e-04 CCAAACGTAC GCGCGTGT GTGAGTG chrX:16599397-16599517 61 5.02e-04 GAATCGCTGC GCGCGTGT GTGTGTGAGC chrX:2286412-2286532 65 5.02e-04 CGAAAGGCGC GCGCGTGT CGCAAGGTTG chr3R:15198655-15198775 112 5.62e-04 GCCGCGTAGA ACACTTGT T chr2R:20654930-20655050 73 5.62e-04 GCTTTCAAAC ACATATGT TTATATGTAT chr3R:8523825-8523945 51 6.32e-04 TTCAGCCGAA CCACTTGC GGGAATTTGG chr3L:3472057-3472177 100 7.21e-04 GCAAATATTT CCATATGT CATATTCAGT chr2R:22180428-22180548 38 7.21e-04 AGCCTGAGCC CCACTTGT CCAACTGAGA chrX:12667787-12667907 52 7.21e-04 TGCCTGGCCT GCACTTGG TTTAACTGAG chr3R:24319753-24319873 25 7.21e-04 GACGAAAAAC CCACTTGT ACGTCCGCTT chr2R:12170633-12170753 53 7.21e-04 AACAAACTGC GCACTTGG CAGAGCATTG chr3R:23773997-23774117 55 7.87e-04 AACGTTTTTC GCTCGTGC AGCAGGTAAG chr2L:7222981-7223101 42 7.87e-04 TAACCGGAAA ACACGCGC TCGTGGAAAA chr2L:142467-142587 88 7.87e-04 GATTCCGCGT AAACGTGC TTTTCTACCC chr3L:7855458-7855578 103 7.87e-04 TCTGACTGGC ACACGCGC TCGTTTCGCT chrX:9201208-9201328 47 7.87e-04 atATTTTGTA ACACGCGC TATCTCCCTC chr2L:9333592-9333712 111 7.87e-04 TGCCATTTAG CCGCGTGC TC chrX:16791186-16791306 19 7.87e-04 CGGCTTTTAA AAACGTGC AGAGCGCGGC chr2L:6472086-6472206 109 8.86e-04 AATGGCAGTA GCTCGTGT GCAG chr3L:7773653-7773773 53 8.86e-04 GCACAAATGC ACACGCGT ACTCACACCA chr3L:20474454-20474574 6 8.86e-04 GTGGA AAACgtgt tgtgttgtgt chr2R:20278850-20278970 24 8.86e-04 GTTCAAAAAA CCGCGTGT TGAATGCTGC chrX:16599196-16599316 82 8.86e-04 TTGTGGCCAC ACACGCGT TTTTTCCCCA chr2R:17420368-17420488 82 8.86e-04 AAGTAAATCA CCGCGTGT TTTTTTCTAA chr3L:1549920-1550040 83 8.86e-04 CTGGTGCGAT GCGCGTGG CGAATTGAAT chr2L:3507267-3507387 41 9.76e-04 CACACAGGGC CAACGTGC CGCTGCCGGC chr3R:11231865-11231985 52 9.76e-04 CCCCGCAACA CAACGTGC CCATTTGTTT chrX:6968708-6968828 4 1.04e-03 TCT GCACGCGG GCGATCAGCT chr2L:5303385-5303505 46 1.04e-03 GCCGATTGTC GAACGTGG AGCGTCCAGC chr2R:15984474-15984594 91 1.04e-03 GCCAGCACGC CCAAGTGC CCGAGAGAAG chr3L:17054055-17054175 70 1.04e-03 TGGTTGCTGG CCAAGTGC CAGGGCCACG chrX:4617529-4617649 99 1.13e-03 AAGATACAAA ACTCGTGC GCGGCGCTTC chr2L:5724891-5725011 63 1.19e-03 AGTcgtgagt gcgtgtgt gcgtgcgtAT chr3L:11689974-11690094 62 1.26e-03 ATGAGCGACT CCTCGTGC TGTAGCCTCT chrX:17579852-17579972 90 1.38e-03 TTGTGTGTGT GAATGTGT TTGGCGTGCG chr3R:12441365-12441485 100 1.47e-03 TGGTGTGCGG ACGTGTGC TTTCGCCACT chr2R:16641001-16641121 83 1.47e-03 GATGATGCAA ACAAGTGG CTGTGGGCCA chr3L:8297665-8297785 8 1.47e-03 CGCCCAT CCATTTGT CATGCCAAAT chr3L:16157064-16157184 97 1.47e-03 TAGTTTGGTT CCATTTGT AATCGCTCAT chr2L:21156748-21156868 104 1.47e-03 CTGGCTTTCC CCATTTGT TGTGCTCGG chr3L:4253746-4253866 20 1.56e-03 TTCTGCACCT GCAAATGC AGCGGTTGGA chr3R:6456394-6456514 92 1.66e-03 CTGCATTAAG AAATGTGC TTTTTTTGCC chr2R:9745285-9745405 101 1.66e-03 TTGTGGTTAT AAATGTGC TTTTCGGCTG chr2R:17048944-17049064 83 1.66e-03 AAAACAACCC CCAAGTGG GAAAAAAACG chrX:13718051-13718171 40 1.66e-03 GGATTGGGCA CCAAGTGG GAGCAGGACG chr2R:21701384-21701504 33 1.76e-03 TTTTTTTTCT GCTTGTGT GAGTCAGTGG chrX:1928150-1928270 50 1.86e-03 ACCATTACTG ACATTTGG GTGAAAAATA chr2R:14171145-14171265 32 1.86e-03 GGTGAGCAAT ACATTTGG CGCATTCCAT chrX:6352629-6352749 79 2.03e-03 TTCTTCTTCA ACACACGT CACGCTGGAA chr3L:6998830-6998950 60 2.10e-03 CGCAGGGCAC CCACACGC GAATTGAGTG chrX:2585915-2586035 96 2.21e-03 TATTATTTTC ACGTGTGG CACGCAAACG chr3R:7790647-7790767 76 2.21e-03 ACCTATTCGC CAACATGT CGAAGAACTG chr2R:10052525-10052645 21 2.29e-03 AAGAGTCAGT GCAAATGG AGAATCGCTC chr3L:19263958-19264078 62 2.43e-03 CGTCGCTCAT ACTCATGT TGCTTCACTT chr3L:5643846-5643966 39 2.50e-03 CTGACCCCCT GCACTCGC TACTCGTTGC chrX:16633717-16633837 96 2.50e-03 gaatggaatg gaatatgc aatgcaatga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACGTGY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10108554-10108674 1.3e-05 52_[+1]_60 chr2R:6644001-6644121 1.3e-05 1_[+1]_111 chr2R:9190900-9191020 1.3e-05 67_[+1]_45 chrX:4319395-4319515 1.3e-05 81_[+1]_31 chr2R:5754494-5754614 1.3e-05 66_[+1]_46 chrX:8121073-8121193 1.3e-05 34_[+1]_78 chrX:1353956-1354076 1.3e-05 93_[+1]_19 chr3L:17804654-17804774 1.3e-05 25_[+1]_87 chr2L:12096437-12096557 2.7e-05 21_[+1]_91 chr3L:7833826-7833946 2.7e-05 1_[+1]_111 chr3L:16730772-16730892 2.7e-05 5_[+1]_107 chr3L:22738314-22738434 2.7e-05 47_[+1]_65 chr2L:9699734-9699854 2.7e-05 83_[+1]_29 chrX:18789344-18789464 2.7e-05 35_[+1]_77 chrX:5317352-5317472 2.7e-05 85_[+1]_27 chr2R:22483252-22483372 2.7e-05 81_[+1]_31 chr2R:14601123-14601243 2.7e-05 57_[+1]_55 chrX:8901634-8901754 2.7e-05 94_[+1]_18 chr3L:12537234-12537354 2.7e-05 40_[+1]_72 chr3R:5843700-5843820 2.7e-05 59_[+1]_53 chr2R:10875714-10875834 2.7e-05 66_[+1]_46 chr3R:9950141-9950261 2.7e-05 102_[+1]_10 chrX:637077-637197 2.7e-05 98_[+1]_14 chrX:15733672-15733792 2.7e-05 71_[+1]_41 chrX:8116123-8116243 2.7e-05 108_[+1]_4 chr2L:13207169-13207289 2.7e-05 28_[+1]_84 chr3L:9624164-9624284 2.7e-05 89_[+1]_23 chr2R:9927031-9927151 2.7e-05 84_[+1]_28 chr2L:2873892-2874012 2.7e-05 21_[+1]_91 chrX:3370740-3370860 2.7e-05 66_[+1]_46 chr3R:16272334-16272454 2.7e-05 43_[+1]_69 chr2L:16316014-16316134 4e-05 4_[+1]_108 chr2L:16530172-16530292 4e-05 107_[+1]_5 chr3R:31736953-31737073 4e-05 108_[+1]_4 chr3L:15494084-15494204 4e-05 46_[+1]_66 chrX:19578157-19578277 4e-05 51_[+1]_61 chrX:6743492-6743612 4e-05 92_[+1]_20 chr2R:21097254-21097374 4e-05 7_[+1]_105 chrX:19616135-19616255 4e-05 70_[+1]_42 chr3R:22583175-22583295 4e-05 22_[+1]_90 chrX:3440783-3440903 4e-05 76_[+1]_36 chr2R:21295988-21296108 4e-05 81_[+1]_31 chr2R:16347450-16347570 4e-05 12_[+1]_100 chrX:10083135-10083255 4e-05 49_[+1]_63 chrX:17883123-17883243 4e-05 59_[+1]_53 chr2L:4968929-4969049 4e-05 105_[+1]_7 chr2L:18698671-18698791 4e-05 62_[+1]_50 chr3R:22446594-22446714 4e-05 27_[+1]_85 chr2L:2010494-2010614 4e-05 33_[+1]_79 chr2L:8707758-8707878 5.5e-05 74_[+1]_38 chr3R:20592609-20592729 5.5e-05 25_[+1]_87 chr2R:23939695-23939815 5.5e-05 20_[+1]_92 chr3R:13780909-13781029 5.5e-05 61_[+1]_51 chr3L:4406023-4406143 5.5e-05 25_[+1]_87 chr2R:23933268-23933388 5.5e-05 22_[+1]_90 chr3R:27926844-27926964 6.8e-05 4_[+1]_108 chr3R:22584697-22584817 6.8e-05 97_[+1]_15 chr3L:7835238-7835358 6.8e-05 19_[+1]_93 chr2R:18514368-18514488 6.8e-05 3_[+1]_109 chr3L:15501704-15501824 6.8e-05 49_[+1]_63 chrX:3696879-3696999 6.8e-05 31_[+1]_81 chr3R:32052616-32052736 6.8e-05 27_[+1]_85 chrX:9600599-9600719 6.8e-05 52_[+1]_60 chrX:10845128-10845248 6.8e-05 89_[+1]_23 chrX:8059778-8059898 6.8e-05 60_[+1]_52 chr2R:18627913-18628033 9.4e-05 38_[+1]_74 chrX:3968440-3968560 9.4e-05 17_[+1]_95 chrX:1843019-1843139 9.4e-05 12_[+1]_100 chrX:20391357-20391477 9.4e-05 103_[+1]_9 chrX:15762885-15763005 9.4e-05 22_[+1]_90 chr3R:20784749-20784869 9.4e-05 18_[+1]_94 chr2L:20084207-20084327 9.4e-05 51_[+1]_61 chr2R:24668238-24668358 9.4e-05 65_[+1]_47 chr3L:21172993-21173113 9.4e-05 23_[+1]_89 chr3R:8670201-8670321 9.4e-05 59_[+1]_53 chr3R:4428712-4428832 9.4e-05 27_[+1]_85 chrX:3530849-3530969 9.4e-05 65_[+1]_47 chr2R:16127365-16127485 9.4e-05 100_[+1]_12 chr3R:9631620-9631740 9.4e-05 47_[+1]_65 chr2R:21708431-21708551 0.00011 54_[+1]_58 chr2L:2979236-2979356 0.00011 60_[+1]_52 chr3R:27608228-27608348 0.00011 73_[+1]_39 chr2R:9137568-9137688 0.00011 [+1]_112 chrX:11108905-11109025 0.00011 73_[+1]_39 chr2R:24014359-24014479 0.00011 57_[+1]_55 chr3R:10093894-10094014 0.00014 109_[+1]_3 chr2R:14870623-14870743 0.00014 58_[+1]_54 chr2R:17435803-17435923 0.00014 91_[+1]_21 chr2L:7203720-7203840 0.00014 62_[+1]_50 chr3R:15262824-15262944 0.00014 10_[+1]_102 chr2R:17870999-17871119 0.00014 102_[+1]_10 chr2L:21178983-21179103 0.00014 108_[+1]_4 chr2R:14621911-14622031 0.00014 59_[+1]_53 chr3R:4649996-4650116 0.00014 39_[+1]_73 chr2L:10510295-10510415 0.00014 36_[+1]_76 chr3R:15278574-15278694 0.00015 75_[+1]_37 chr2R:6050772-6050892 0.00015 30_[+1]_82 chr3L:20387437-20387557 0.00015 70_[+1]_42 chrX:1927949-1928069 0.00015 3_[+1]_109 chrX:12905796-12905916 0.00015 45_[+1]_67 chr3L:8725378-8725498 0.00015 57_[+1]_55 chrX:11149386-11149506 0.00018 50_[+1]_62 chr2L:20098040-20098160 0.00018 67_[+1]_45 chr3R:29230819-29230939 0.00018 37_[+1]_75 chr3R:19641241-19641361 0.00018 107_[+1]_5 chr3R:14020746-14020866 0.00018 39_[+1]_73 chr2R:19357115-19357235 0.00018 78_[+1]_34 chr3R:13032423-13032543 0.00018 5_[+1]_107 chr2L:3480053-3480173 0.00018 64_[+1]_48 chrX:2339591-2339711 0.00018 90_[+1]_22 chr2R:17518156-17518276 0.00018 76_[+1]_36 chrX:8117007-8117127 0.00018 54_[+1]_58 chr2R:14275141-14275261 0.00018 38_[+1]_74 chr3L:21501316-21501436 0.00018 6_[+1]_106 chr3R:29049445-29049565 0.00018 55_[+1]_57 chrX:15450417-15450537 0.00018 100_[+1]_12 chr2R:23872181-23872301 0.00019 29_[+1]_83 chr3L:21335155-21335275 0.00019 89_[+1]_23 chr3R:10084323-10084443 0.00019 43_[+1]_69 chr2R:12530450-12530570 0.00019 109_[+1]_3 chrX:16793275-16793395 0.00019 62_[+1]_50 chr2R:17593156-17593276 0.00019 100_[+1]_12 chrX:17163913-17164033 0.00019 51_[+1]_61 chrX:13680346-13680466 0.00019 74_[+1]_38 chr3L:5777248-5777368 0.00019 56_[+1]_56 chrX:11349001-11349121 0.00019 103_[+1]_9 chr3R:12456462-12456582 0.00024 63_[+1]_49 chr3L:21972767-21972887 0.00024 17_[+1]_95 chr3R:7947675-7947795 0.00024 50_[+1]_62 chr2R:9601801-9601921 0.00024 66_[+1]_46 chrX:11147823-11147943 0.00024 19_[+1]_93 chrX:841252-841372 0.00024 111_[+1]_1 chrX:13741518-13741638 0.00024 48_[+1]_64 chrX:12716053-12716173 0.00029 91_[+1]_21 chr3L:8576014-8576134 0.00029 83_[+1]_29 chr2L:12207682-12207802 0.00029 67_[+1]_45 chr3L:21434155-21434275 0.00029 48_[+1]_64 chr3L:12519457-12519577 0.00029 88_[+1]_24 chrX:22481225-22481345 0.00029 63_[+1]_49 chr3R:10394544-10394664 0.00033 14_[+1]_98 chr3R:27947999-27948119 0.00033 74_[+1]_38 chr3L:17238319-17238439 0.00033 75_[+1]_37 chrX:1232678-1232798 0.00033 60_[+1]_52 chrX:9556532-9556652 0.00033 26_[+1]_86 chrX:19240403-19240523 0.00034 65_[+1]_47 chr2R:12279537-12279657 0.00037 41_[+1]_71 chr3R:15346116-15346236 0.00043 71_[+1]_41 chr3R:13017891-13018011 0.00043 35_[+1]_77 chr3R:8712234-8712354 0.00043 109_[+1]_3 chr3R:17060953-17061073 0.00046 76_[+1]_36 chrX:17302609-17302729 0.00046 99_[+1]_13 chr3L:9689950-9690070 0.00046 44_[+1]_68 chr2R:23672113-23672233 0.00046 53_[+1]_59 chr3L:4185526-4185646 0.00046 98_[+1]_14 chrX:22456261-22456381 0.0005 105_[+1]_7 chrX:16599397-16599517 0.0005 60_[+1]_52 chrX:2286412-2286532 0.0005 64_[+1]_48 chr3R:15198655-15198775 0.00056 111_[+1]_1 chr2R:20654930-20655050 0.00056 72_[+1]_40 chr3R:8523825-8523945 0.00063 50_[+1]_62 chr3L:3472057-3472177 0.00072 99_[+1]_13 chr2R:22180428-22180548 0.00072 37_[+1]_75 chrX:12667787-12667907 0.00072 51_[+1]_61 chr3R:24319753-24319873 0.00072 24_[+1]_88 chr2R:12170633-12170753 0.00072 52_[+1]_60 chr3R:23773997-23774117 0.00079 54_[+1]_58 chr2L:7222981-7223101 0.00079 41_[+1]_71 chr2L:142467-142587 0.00079 87_[+1]_25 chr3L:7855458-7855578 0.00079 102_[+1]_10 chrX:9201208-9201328 0.00079 46_[+1]_66 chr2L:9333592-9333712 0.00079 110_[+1]_2 chrX:16791186-16791306 0.00079 18_[+1]_94 chr2L:6472086-6472206 0.00089 108_[+1]_4 chr3L:7773653-7773773 0.00089 52_[+1]_60 chr3L:20474454-20474574 0.00089 5_[+1]_107 chr2R:20278850-20278970 0.00089 23_[+1]_89 chrX:16599196-16599316 0.00089 81_[+1]_31 chr2R:17420368-17420488 0.00089 81_[+1]_31 chr3L:1549920-1550040 0.00089 82_[+1]_30 chr2L:3507267-3507387 0.00098 40_[+1]_72 chr3R:11231865-11231985 0.00098 51_[+1]_61 chrX:6968708-6968828 0.001 3_[+1]_109 chr2L:5303385-5303505 0.001 45_[+1]_67 chr2R:15984474-15984594 0.001 90_[+1]_22 chr3L:17054055-17054175 0.001 69_[+1]_43 chrX:4617529-4617649 0.0011 98_[+1]_14 chr2L:5724891-5725011 0.0012 62_[+1]_50 chr3L:11689974-11690094 0.0013 61_[+1]_51 chrX:17579852-17579972 0.0014 89_[+1]_23 chr3R:12441365-12441485 0.0015 99_[+1]_13 chr2R:16641001-16641121 0.0015 82_[+1]_30 chr3L:8297665-8297785 0.0015 7_[+1]_105 chr3L:16157064-16157184 0.0015 96_[+1]_16 chr2L:21156748-21156868 0.0015 103_[+1]_9 chr3L:4253746-4253866 0.0016 19_[+1]_93 chr3R:6456394-6456514 0.0017 91_[+1]_21 chr2R:9745285-9745405 0.0017 100_[+1]_12 chr2R:17048944-17049064 0.0017 82_[+1]_30 chrX:13718051-13718171 0.0017 39_[+1]_73 chr2R:21701384-21701504 0.0018 32_[+1]_80 chrX:1928150-1928270 0.0019 49_[+1]_63 chr2R:14171145-14171265 0.0019 31_[+1]_81 chrX:6352629-6352749 0.002 78_[+1]_34 chr3L:6998830-6998950 0.0021 59_[+1]_53 chrX:2585915-2586035 0.0022 95_[+1]_17 chr3R:7790647-7790767 0.0022 75_[+1]_37 chr2R:10052525-10052645 0.0023 20_[+1]_92 chr3L:19263958-19264078 0.0024 61_[+1]_51 chr3L:5643846-5643966 0.0025 38_[+1]_74 chrX:16633717-16633837 0.0025 95_[+1]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACGTGY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCACGTGY width=8 seqs=210 chr2R:10108554-10108674 ( 53) GCACGTGC 1 chr2R:6644001-6644121 ( 2) GCACGTGC 1 chr2R:9190900-9191020 ( 68) GCACGTGC 1 chrX:4319395-4319515 ( 82) GCACGTGC 1 chr2R:5754494-5754614 ( 67) GCACGTGC 1 chrX:8121073-8121193 ( 35) GCACGTGC 1 chrX:1353956-1354076 ( 94) GCACGTGC 1 chr3L:17804654-17804774 ( 26) GCACGTGC 1 chr2L:12096437-12096557 ( 22) GCACGTGT 1 chr3L:7833826-7833946 ( 2) GCACGTGT 1 chr3L:16730772-16730892 ( 6) GCACGTGT 1 chr3L:22738314-22738434 ( 48) GCACGTGT 1 chr2L:9699734-9699854 ( 84) GCACGTGT 1 chrX:18789344-18789464 ( 36) GCACGTGT 1 chrX:5317352-5317472 ( 86) GCACGTGT 1 chr2R:22483252-22483372 ( 82) GCACGTGT 1 chr2R:14601123-14601243 ( 58) GCACGTGT 1 chrX:8901634-8901754 ( 95) GCACGTGT 1 chr3L:12537234-12537354 ( 41) GCACGTGT 1 chr3R:5843700-5843820 ( 60) GCACGTGT 1 chr2R:10875714-10875834 ( 67) GCACGTGT 1 chr3R:9950141-9950261 ( 103) GCACGTGT 1 chrX:637077-637197 ( 99) GCACGTGT 1 chrX:15733672-15733792 ( 72) GCACGTGT 1 chrX:8116123-8116243 ( 109) GCACGTGT 1 chr2L:13207169-13207289 ( 29) GCACGTGT 1 chr3L:9624164-9624284 ( 90) GCACGTGT 1 chr2R:9927031-9927151 ( 85) GCACGTGT 1 chr2L:2873892-2874012 ( 22) GCACGTGT 1 chrX:3370740-3370860 ( 67) GCACGTGT 1 chr3R:16272334-16272454 ( 44) GCACGTGT 1 chr2L:16316014-16316134 ( 5) ACACGTGC 1 chr2L:16530172-16530292 ( 108) ACACGTGC 1 chr3R:31736953-31737073 ( 109) ACACGTGC 1 chr3L:15494084-15494204 ( 47) ACACGTGC 1 chrX:19578157-19578277 ( 52) ACACGTGC 1 chrX:6743492-6743612 ( 93) ACACGTGC 1 chr2R:21097254-21097374 ( 8) ACACGTGC 1 chrX:19616135-19616255 ( 71) ACACGTGC 1 chr3R:22583175-22583295 ( 23) ACACGTGC 1 chrX:3440783-3440903 ( 77) ACACGTGC 1 chr2R:21295988-21296108 ( 82) ACACGTGC 1 chr2R:16347450-16347570 ( 13) ACACGTGC 1 chrX:10083135-10083255 ( 50) ACACGTGC 1 chrX:17883123-17883243 ( 60) ACACGTGC 1 chr2L:4968929-4969049 ( 106) ACACGTGC 1 chr2L:18698671-18698791 ( 63) ACACGTGC 1 chr3R:22446594-22446714 ( 28) ACACGTGC 1 chr2L:2010494-2010614 ( 34) ACACGTGC 1 chr2L:8707758-8707878 ( 75) ACACGTGT 1 chr3R:20592609-20592729 ( 26) ACACGTGT 1 chr2R:23939695-23939815 ( 21) ACACGTGT 1 chr3R:13780909-13781029 ( 62) ACACGTGT 1 chr3L:4406023-4406143 ( 26) ACACGTGT 1 chr2R:23933268-23933388 ( 23) ACACGTGT 1 chr3R:27926844-27926964 ( 5) CCACGTGC 1 chr3R:22584697-22584817 ( 98) CCACGTGC 1 chr3L:7835238-7835358 ( 20) CCACGTGC 1 chr2R:18514368-18514488 ( 4) CCACGTGC 1 chr3L:15501704-15501824 ( 50) CCACGTGC 1 chrX:3696879-3696999 ( 32) CCACGTGC 1 chr3R:32052616-32052736 ( 28) CCACGTGC 1 chrX:9600599-9600719 ( 53) CCACGTGC 1 chrX:10845128-10845248 ( 90) CCACGTGC 1 chrX:8059778-8059898 ( 61) CCACGTGC 1 chr2R:18627913-18628033 ( 39) CCACGTGT 1 chrX:3968440-3968560 ( 18) GCACGTGG 1 chrX:1843019-1843139 ( 13) GCACGTGG 1 chrX:20391357-20391477 ( 104) GCACGTGG 1 chrX:15762885-15763005 ( 23) GCACGTGG 1 chr3R:20784749-20784869 ( 19) CCACGTGT 1 chr2L:20084207-20084327 ( 52) GCACGTGG 1 chr2R:24668238-24668358 ( 66) GCACGTGG 1 chr3L:21172993-21173113 ( 24) GCACGTGG 1 chr3R:8670201-8670321 ( 60) CCACGTGT 1 chr3R:4428712-4428832 ( 28) CCACGTGT 1 chrX:3530849-3530969 ( 66) GCACGTGG 1 chr2R:16127365-16127485 ( 101) GCACGTGG 1 chr3R:9631620-9631740 ( 48) CCACGTGT 1 chr2R:21708431-21708551 ( 55) GCATGTGC 1 chr2L:2979236-2979356 ( 61) GCATGTGC 1 chr3R:27608228-27608348 ( 74) GCATGTGC 1 chr2R:9137568-9137688 ( 1) GCATGTGC 1 chrX:11108905-11109025 ( 74) GCATGTGC 1 chr2R:24014359-24014479 ( 58) GCATGTGC 1 chr3R:10093894-10094014 ( 110) ACACGTGG 1 chr2R:14870623-14870743 ( 59) GCATGTGT 1 chr2R:17435803-17435923 ( 92) GCATGTGT 1 chr2L:7203720-7203840 ( 63) GCATGTGT 1 chr3R:15262824-15262944 ( 11) GCATGTGT 1 chr2R:17870999-17871119 ( 103) GCATGTGT 1 chr2L:21178983-21179103 ( 109) ACACGTGG 1 chr2R:14621911-14622031 ( 60) ACACGTGG 1 chr3R:4649996-4650116 ( 40) GCATGTGT 1 chr2L:10510295-10510415 ( 37) ACACGTGG 1 chr3R:15278574-15278694 ( 76) GCACATGC 1 chr2R:6050772-6050892 ( 31) GCACATGC 1 chr3L:20387437-20387557 ( 71) GCACATGC 1 chrX:1927949-1928069 ( 4) GCACATGC 1 chrX:12905796-12905916 ( 46) GCACATGC 1 chr3L:8725378-8725498 ( 58) GCACATGC 1 chrX:11149386-11149506 ( 51) GCACATGT 1 chr2L:20098040-20098160 ( 68) GCACATGT 1 chr3R:29230819-29230939 ( 38) GCACATGT 1 chr3R:19641241-19641361 ( 108) GCACATGT 1 chr3R:14020746-14020866 ( 40) GCACATGT 1 chr2R:19357115-19357235 ( 79) GCACATGT 1 chr3R:13032423-13032543 ( 6) GCACATGT 1 chr2L:3480053-3480173 ( 65) GCACATGT 1 chrX:2339591-2339711 ( 91) CCACGTGG 1 chr2R:17518156-17518276 ( 77) GCACATGT 1 chrX:8117007-8117127 ( 55) GCACATGT 1 chr2R:14275141-14275261 ( 39) GCACATGT 1 chr3L:21501316-21501436 ( 7) GCACATGT 1 chr3R:29049445-29049565 ( 56) GCACATGT 1 chrX:15450417-15450537 ( 101) GCACATGT 1 chr2R:23872181-23872301 ( 30) ACATGTGC 1 chr3L:21335155-21335275 ( 90) ACATGTGC 1 chr3R:10084323-10084443 ( 44) ACATGTGC 1 chr2R:12530450-12530570 ( 110) ACATGTGC 1 chrX:16793275-16793395 ( 63) ACATGTGC 1 chr2R:17593156-17593276 ( 101) ACATGTGC 1 chrX:17163913-17164033 ( 52) ACATGTGC 1 chrX:13680346-13680466 ( 75) ACATGTGC 1 chr3L:5777248-5777368 ( 57) ACATGTGC 1 chrX:11349001-11349121 ( 104) ACATGTGC 1 chr3R:12456462-12456582 ( 64) CCATGTGC 1 chr3L:21972767-21972887 ( 18) ACACATGC 1 chr3R:7947675-7947795 ( 51) CCATGTGC 1 chr2R:9601801-9601921 ( 67) CCATGTGC 1 chrX:11147823-11147943 ( 20) ACACATGC 1 chrX:841252-841372 ( 112) CCATGTGC 1 chrX:13741518-13741638 ( 49) CCATGTGC 1 chrX:12716053-12716173 ( 92) CCATGTGT 1 chr3L:8576014-8576134 ( 84) GCATGTGG 1 chr2L:12207682-12207802 ( 68) GCATGTGG 1 chr3L:21434155-21434275 ( 49) CCATGTGT 1 chr3L:12519457-12519577 ( 89) CCATGTGT 1 chrX:22481225-22481345 ( 64) GCATGTGG 1 chr3R:10394544-10394664 ( 15) GCACATGG 1 chr3R:27947999-27948119 ( 75) CCACATGT 1 chr3L:17238319-17238439 ( 76) GCACATGG 1 chrX:1232678-1232798 ( 61) GCACATGG 1 chrX:9556532-9556652 ( 27) GCACATGG 1 chrX:19240403-19240523 ( 66) ACATGTGG 1 chr2R:12279537-12279657 ( 42) GCATATGC 1 chr3R:15346116-15346236 ( 72) ACACATGG 1 chr3R:13017891-13018011 ( 36) ACACATGG 1 chr3R:8712234-8712354 ( 110) GCACTTGT 1 chr3R:17060953-17061073 ( 77) CCACATGG 1 chrX:17302609-17302729 ( 100) GCGCGTGC 1 chr3L:9689950-9690070 ( 45) CCACATGG 1 chr2R:23672113-23672233 ( 54) CCACATGG 1 chr3L:4185526-4185646 ( 99) CCACATGG 1 chrX:22456261-22456381 ( 106) GCGCGTGT 1 chrX:16599397-16599517 ( 61) GCGCGTGT 1 chrX:2286412-2286532 ( 65) GCGCGTGT 1 chr3R:15198655-15198775 ( 112) ACACTTGT 1 chr2R:20654930-20655050 ( 73) ACATATGT 1 chr3R:8523825-8523945 ( 51) CCACTTGC 1 chr3L:3472057-3472177 ( 100) CCATATGT 1 chr2R:22180428-22180548 ( 38) CCACTTGT 1 chrX:12667787-12667907 ( 52) GCACTTGG 1 chr3R:24319753-24319873 ( 25) CCACTTGT 1 chr2R:12170633-12170753 ( 53) GCACTTGG 1 chr3R:23773997-23774117 ( 55) GCTCGTGC 1 chr2L:7222981-7223101 ( 42) ACACGCGC 1 chr2L:142467-142587 ( 88) AAACGTGC 1 chr3L:7855458-7855578 ( 103) ACACGCGC 1 chrX:9201208-9201328 ( 47) ACACGCGC 1 chr2L:9333592-9333712 ( 111) CCGCGTGC 1 chrX:16791186-16791306 ( 19) AAACGTGC 1 chr2L:6472086-6472206 ( 109) GCTCGTGT 1 chr3L:7773653-7773773 ( 53) ACACGCGT 1 chr3L:20474454-20474574 ( 6) AAACGTGT 1 chr2R:20278850-20278970 ( 24) CCGCGTGT 1 chrX:16599196-16599316 ( 82) ACACGCGT 1 chr2R:17420368-17420488 ( 82) CCGCGTGT 1 chr3L:1549920-1550040 ( 83) GCGCGTGG 1 chr2L:3507267-3507387 ( 41) CAACGTGC 1 chr3R:11231865-11231985 ( 52) CAACGTGC 1 chrX:6968708-6968828 ( 4) GCACGCGG 1 chr2L:5303385-5303505 ( 46) GAACGTGG 1 chr2R:15984474-15984594 ( 91) CCAAGTGC 1 chr3L:17054055-17054175 ( 70) CCAAGTGC 1 chrX:4617529-4617649 ( 99) ACTCGTGC 1 chr2L:5724891-5725011 ( 63) GCGTGTGT 1 chr3L:11689974-11690094 ( 62) CCTCGTGC 1 chrX:17579852-17579972 ( 90) GAATGTGT 1 chr3R:12441365-12441485 ( 100) ACGTGTGC 1 chr2R:16641001-16641121 ( 83) ACAAGTGG 1 chr3L:8297665-8297785 ( 8) CCATTTGT 1 chr3L:16157064-16157184 ( 97) CCATTTGT 1 chr2L:21156748-21156868 ( 104) CCATTTGT 1 chr3L:4253746-4253866 ( 20) GCAAATGC 1 chr3R:6456394-6456514 ( 92) AAATGTGC 1 chr2R:9745285-9745405 ( 101) AAATGTGC 1 chr2R:17048944-17049064 ( 83) CCAAGTGG 1 chrX:13718051-13718171 ( 40) CCAAGTGG 1 chr2R:21701384-21701504 ( 33) GCTTGTGT 1 chrX:1928150-1928270 ( 50) ACATTTGG 1 chr2R:14171145-14171265 ( 32) ACATTTGG 1 chrX:6352629-6352749 ( 79) ACACACGT 1 chr3L:6998830-6998950 ( 60) CCACACGC 1 chrX:2585915-2586035 ( 96) ACGTGTGG 1 chr3R:7790647-7790767 ( 76) CAACATGT 1 chr2R:10052525-10052645 ( 21) GCAAATGG 1 chr3L:19263958-19264078 ( 62) ACTCATGT 1 chr3L:5643846-5643966 ( 39) GCACTCGC 1 chrX:16633717-16633837 ( 96) GAATATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACGTGY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 7.60464 E= 2.1e-130 21 -5 97 -1436 -231 200 -1436 -1436 182 -1436 -220 -320 -296 162 -1436 -14 -34 -1436 161 -209 -1436 -247 -1436 186 -1436 -1436 206 -1436 -1436 82 -33 57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACGTGY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 210 E= 2.1e-130 0.300000 0.228571 0.471429 0.000000 0.052381 0.947619 0.000000 0.000000 0.919048 0.000000 0.052381 0.028571 0.033333 0.728571 0.000000 0.238095 0.204762 0.000000 0.733333 0.061905 0.000000 0.042857 0.000000 0.957143 0.000000 0.000000 1.000000 0.000000 0.000000 0.419048 0.190476 0.390476 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACGTGY MEME-1 regular expression -------------------------------------------------------------------------------- [GAC]CA[CT][GA]TG[CT] -------------------------------------------------------------------------------- Time 7.37 secs. ******************************************************************************** ******************************************************************************** MOTIF CACAMACA MEME-2 width = 8 sites = 53 llr = 431 E-value = 7.1e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACAMACA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :9384a3a pos.-specific C a:726:7: probability G :::1:::: matrix T :1:::::: bits 2.1 1.9 * * * 1.7 ** * * 1.5 ** * * Relative 1.2 *** *** Entropy 1.0 ******** (11.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus A A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAMACA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:16316014-16316134 27 1.44e-05 GATTGACTTT CACACACA AACAGCAAAC chr3L:7835238-7835358 81 1.44e-05 GCTACTGCCT CACACACA CTTGGTACAA chr2R:10108554-10108674 25 1.44e-05 tacacacagt cacacaca gacaGGGCTG chr3L:7833826-7833946 27 1.44e-05 ACACCGGGCA CACACACA TACGCAAATT chr2L:16530172-16530292 84 1.44e-05 GTGTATTTCG CACACACA CAATCTGCAC chr3R:10093894-10094014 62 1.44e-05 GTCTTTGCCA CACACACA CTTGTTACCA chr2R:14870623-14870743 1 1.44e-05 . CACACACA CGTACGGAAT chr2R:9601801-9601921 105 1.44e-05 AATGCTGCTC CACACACA GTATTTCA chr3L:9689950-9690070 23 1.44e-05 CTCGcacaca cacacaca cactcacaca chrX:9600599-9600719 39 1.44e-05 GCTGCCCACG CACACACA GCCAGCCCAC chr3R:9950141-9950261 3 1.44e-05 ca cacacaca cacgcagcgc chr3R:27926844-27926964 93 3.02e-05 TTTGCTCCGG CACAAACA CTTTCTCCCG chrX:1843019-1843139 54 3.02e-05 cgaaaAGCCC CACAAACA CAGTGTGACT chrX:6684248-6684368 28 3.02e-05 caccaccacc cacaaaca gaaAATTTAT chr3R:24038831-24038951 8 3.02e-05 CTCTGTG CACAAACA GAACCTCTAC chrX:19578157-19578277 92 3.02e-05 ACGACTGACA CACAAACA CACGCGAGCT chr3R:20784749-20784869 50 3.02e-05 TCCACACTCA CACAAACA CTTGCAACCT chrX:19616135-19616255 30 3.02e-05 CGATGGCTTT CACAAACA TATGTTGCGT chr3R:15198655-15198775 60 4.61e-05 TTGACTTGGC CAAACACA GACACGAGTG chr3R:10394544-10394664 48 6.19e-05 CTCATGCGTA CACACAAA CGTGTCGGTA chr3L:16730772-16730892 38 7.92e-05 TTACGTTTTA CAAAAACA TATTATCGAT chr2L:12207682-12207802 95 7.92e-05 TTGTGAATGC CAAAAACA ACAGCTGATC chr3L:15494084-15494204 96 7.92e-05 TGATAAAAGT CAAAAACA ACAACAGAAG chr3R:22446594-22446714 13 7.92e-05 AAGTTAAACA CAAAAACA GCCGCACACA chr2L:12096437-12096557 6 9.66e-05 GAATT CACAAAAA TGCGAGCGGC chr3L:21434155-21434275 23 9.66e-05 GTCAATTCAA CACAAAAA GAGAGATACC chr3R:13032423-13032543 50 9.66e-05 CGTCTTATCT CACAAAAA TAAAAGTCGG chr2R:21295988-21296108 15 1.10e-04 TTTCAGTTGG CACCCACA CACTGAGCCA chrX:17883123-17883243 19 1.10e-04 TTTCCCAGCC CACCCACA CCTATGCCGC chr3L:17054055-17054175 32 1.10e-04 CATTTTTCCG CACCCACA AGATGCCGCC chr3L:7773653-7773773 84 1.37e-04 CAGCAGAACA CACGCACA CAGATAGACT chr2R:23872181-23872301 77 1.37e-04 CACACTCACA CACCAACA AACCCATACA chrX:11147823-11147943 29 1.37e-04 cacacatgca cacgcaca cggacgacga chr2R:17870999-17871119 90 1.37e-04 TACAAACACG CACGCACA CAGAGGCATG chr2L:21178983-21179103 96 1.37e-04 ATGCAGAAGG CACGCACA CTTACACACG chr2R:9927031-9927151 20 1.37e-04 TTAATAACTA CACCAACA CATCGACCAG chr3R:29230819-29230939 48 1.55e-04 GCACATGTTA CAAACAAA CATTGTGATT chr2R:21624945-21625065 45 1.55e-04 AAGACGAAAA CAAACAAA TTTGTGCGAC chr2R:9190900-9191020 2 1.55e-04 G CAAACAAA ACGCGAGCGG chr2L:13207169-13207289 9 1.55e-04 TCCCAAGC CAAACAAA AACCAGGCCA chr3R:4649996-4650116 85 1.55e-04 GCGAAGCAAG CAAACAAA GCAAAATGGA chr2L:2010494-2010614 74 1.55e-04 TTCGGTCGAG CAAACAAA TTGGGCCCGA chr3R:11231865-11231985 94 1.88e-04 TAAGTTATCG CAAAAAAA ACTCAAATAT chr2R:16347450-16347570 2 1.88e-04 G CAAAAAAA TATACACGTG chrX:22456261-22456381 80 2.32e-04 CCCCCTCTCC CTCACACA TTTCACTGCC chr2L:3507267-3507387 29 2.32e-04 GAAACACCCA CTCACACA GGGCCAACGT chr2R:6644001-6644121 71 2.62e-04 ACACAGCCGT CAACAACA TTATCTGCAG chr2R:17435803-17435923 37 2.62e-04 CAAAAATTGG CAACAACA AAAGCGAAGC chrX:2585915-2586035 104 2.93e-04 TCACGTGTGG CACGCAAA CGAGCCAAA chr3L:3472057-3472177 37 2.93e-04 GTGCGAGTCG CACCAAAA AGTTGTCAGA chr3L:8576014-8576134 67 3.09e-04 ACTAGTAGCG CTCAAACA AGTGGGCGGG chr3L:4253746-4253866 102 3.25e-04 GACATTGTTG TACACACA GGCAGAGTCA chr2R:22180428-22180548 60 3.90e-04 CTGAGATCTG TACAAACA CTTTAAACCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAMACA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:16316014-16316134 1.4e-05 26_[+2]_86 chr3L:7835238-7835358 1.4e-05 80_[+2]_32 chr2R:10108554-10108674 1.4e-05 24_[+2]_88 chr3L:7833826-7833946 1.4e-05 26_[+2]_86 chr2L:16530172-16530292 1.4e-05 83_[+2]_29 chr3R:10093894-10094014 1.4e-05 61_[+2]_51 chr2R:14870623-14870743 1.4e-05 [+2]_112 chr2R:9601801-9601921 1.4e-05 104_[+2]_8 chr3L:9689950-9690070 1.4e-05 22_[+2]_90 chrX:9600599-9600719 1.4e-05 38_[+2]_74 chr3R:9950141-9950261 1.4e-05 2_[+2]_110 chr3R:27926844-27926964 3e-05 92_[+2]_20 chrX:1843019-1843139 3e-05 53_[+2]_59 chrX:6684248-6684368 3e-05 27_[+2]_85 chr3R:24038831-24038951 3e-05 7_[+2]_105 chrX:19578157-19578277 3e-05 91_[+2]_21 chr3R:20784749-20784869 3e-05 49_[+2]_63 chrX:19616135-19616255 3e-05 29_[+2]_83 chr3R:15198655-15198775 4.6e-05 59_[+2]_53 chr3R:10394544-10394664 6.2e-05 47_[+2]_65 chr3L:16730772-16730892 7.9e-05 37_[+2]_75 chr2L:12207682-12207802 7.9e-05 94_[+2]_18 chr3L:15494084-15494204 7.9e-05 95_[+2]_17 chr3R:22446594-22446714 7.9e-05 12_[+2]_100 chr2L:12096437-12096557 9.7e-05 5_[+2]_107 chr3L:21434155-21434275 9.7e-05 22_[+2]_90 chr3R:13032423-13032543 9.7e-05 49_[+2]_63 chr2R:21295988-21296108 0.00011 14_[+2]_98 chrX:17883123-17883243 0.00011 18_[+2]_94 chr3L:17054055-17054175 0.00011 31_[+2]_81 chr3L:7773653-7773773 0.00014 83_[+2]_29 chr2R:23872181-23872301 0.00014 76_[+2]_36 chrX:11147823-11147943 0.00014 28_[+2]_84 chr2R:17870999-17871119 0.00014 89_[+2]_23 chr2L:21178983-21179103 0.00014 95_[+2]_17 chr2R:9927031-9927151 0.00014 19_[+2]_93 chr3R:29230819-29230939 0.00015 47_[+2]_65 chr2R:21624945-21625065 0.00015 44_[+2]_68 chr2R:9190900-9191020 0.00015 1_[+2]_111 chr2L:13207169-13207289 0.00015 8_[+2]_104 chr3R:4649996-4650116 0.00015 84_[+2]_28 chr2L:2010494-2010614 0.00015 73_[+2]_39 chr3R:11231865-11231985 0.00019 93_[+2]_19 chr2R:16347450-16347570 0.00019 1_[+2]_111 chrX:22456261-22456381 0.00023 79_[+2]_33 chr2L:3507267-3507387 0.00023 28_[+2]_84 chr2R:6644001-6644121 0.00026 70_[+2]_42 chr2R:17435803-17435923 0.00026 36_[+2]_76 chrX:2585915-2586035 0.00029 103_[+2]_9 chr3L:3472057-3472177 0.00029 36_[+2]_76 chr3L:8576014-8576134 0.00031 66_[+2]_46 chr3L:4253746-4253866 0.00032 101_[+2]_11 chr2R:22180428-22180548 0.00039 59_[+2]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAMACA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACAMACA width=8 seqs=53 chr2L:16316014-16316134 ( 27) CACACACA 1 chr3L:7835238-7835358 ( 81) CACACACA 1 chr2R:10108554-10108674 ( 25) CACACACA 1 chr3L:7833826-7833946 ( 27) CACACACA 1 chr2L:16530172-16530292 ( 84) CACACACA 1 chr3R:10093894-10094014 ( 62) CACACACA 1 chr2R:14870623-14870743 ( 1) CACACACA 1 chr2R:9601801-9601921 ( 105) CACACACA 1 chr3L:9689950-9690070 ( 23) CACACACA 1 chrX:9600599-9600719 ( 39) CACACACA 1 chr3R:9950141-9950261 ( 3) CACACACA 1 chr3R:27926844-27926964 ( 93) CACAAACA 1 chrX:1843019-1843139 ( 54) CACAAACA 1 chrX:6684248-6684368 ( 28) CACAAACA 1 chr3R:24038831-24038951 ( 8) CACAAACA 1 chrX:19578157-19578277 ( 92) CACAAACA 1 chr3R:20784749-20784869 ( 50) CACAAACA 1 chrX:19616135-19616255 ( 30) CACAAACA 1 chr3R:15198655-15198775 ( 60) CAAACACA 1 chr3R:10394544-10394664 ( 48) CACACAAA 1 chr3L:16730772-16730892 ( 38) CAAAAACA 1 chr2L:12207682-12207802 ( 95) CAAAAACA 1 chr3L:15494084-15494204 ( 96) CAAAAACA 1 chr3R:22446594-22446714 ( 13) CAAAAACA 1 chr2L:12096437-12096557 ( 6) CACAAAAA 1 chr3L:21434155-21434275 ( 23) CACAAAAA 1 chr3R:13032423-13032543 ( 50) CACAAAAA 1 chr2R:21295988-21296108 ( 15) CACCCACA 1 chrX:17883123-17883243 ( 19) CACCCACA 1 chr3L:17054055-17054175 ( 32) CACCCACA 1 chr3L:7773653-7773773 ( 84) CACGCACA 1 chr2R:23872181-23872301 ( 77) CACCAACA 1 chrX:11147823-11147943 ( 29) CACGCACA 1 chr2R:17870999-17871119 ( 90) CACGCACA 1 chr2L:21178983-21179103 ( 96) CACGCACA 1 chr2R:9927031-9927151 ( 20) CACCAACA 1 chr3R:29230819-29230939 ( 48) CAAACAAA 1 chr2R:21624945-21625065 ( 45) CAAACAAA 1 chr2R:9190900-9191020 ( 2) CAAACAAA 1 chr2L:13207169-13207289 ( 9) CAAACAAA 1 chr3R:4649996-4650116 ( 85) CAAACAAA 1 chr2L:2010494-2010614 ( 74) CAAACAAA 1 chr3R:11231865-11231985 ( 94) CAAAAAAA 1 chr2R:16347450-16347570 ( 2) CAAAAAAA 1 chrX:22456261-22456381 ( 80) CTCACACA 1 chr2L:3507267-3507387 ( 29) CTCACACA 1 chr2R:6644001-6644121 ( 71) CAACAACA 1 chr2R:17435803-17435923 ( 37) CAACAACA 1 chrX:2585915-2586035 ( 104) CACGCAAA 1 chr3L:3472057-3472177 ( 37) CACCAAAA 1 chr3L:8576014-8576134 ( 67) CTCAAACA 1 chr3L:4253746-4253866 ( 102) TACACACA 1 chr2R:22180428-22180548 ( 60) TACAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAMACA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6976 E= 7.1e-006 -1237 202 -1237 -280 186 -1237 -1237 -222 12 160 -1237 -1237 154 -65 -135 -1237 74 126 -1237 -1237 195 -1237 -1237 -1237 2 164 -1237 -1237 195 -1237 -1237 -1237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAMACA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 7.1e-006 0.000000 0.962264 0.000000 0.037736 0.943396 0.000000 0.000000 0.056604 0.283019 0.716981 0.000000 0.000000 0.754717 0.150943 0.094340 0.000000 0.433962 0.566038 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.264151 0.735849 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAMACA MEME-2 regular expression -------------------------------------------------------------------------------- CA[CA]A[CA]A[CA]A -------------------------------------------------------------------------------- Time 13.27 secs. ******************************************************************************** ******************************************************************************** MOTIF AWCAGCTG MEME-3 width = 8 sites = 26 llr = 247 E-value = 3.5e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 94:a:::: pos.-specific C 12a::a:: probability G :1::a::a matrix T :3::::a: bits 2.1 * ** * 1.9 ****** 1.7 ****** 1.5 * ****** Relative 1.2 * ****** Entropy 1.0 * ****** (13.7 bits) 0.8 * ****** 0.6 * ****** 0.4 * ****** 0.2 ******** 0.0 -------- Multilevel AACAGCTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21708431-21708551 39 1.50e-05 GTTTCTGGCG AACAGCTG ATGCGGCTGC chr3R:31736953-31737073 99 1.50e-05 GGTCACTCCT AACAGCTG CAACACGTGC chr2L:2979236-2979356 43 1.50e-05 CGAAGTTCGA AACAGCTG AGCCGCAGAT chr2R:24668238-24668358 100 1.50e-05 TAACGAACAA AACAGCTG ATCGGCAAAA chr2R:17048944-17049064 22 1.50e-05 AAATTATGGG AACAGCTG ATAACTGATA chr2L:18698870-18698990 30 1.50e-05 AATCCACCGA AACAGCTG TTGAATTGGG chrX:15733672-15733792 99 1.50e-05 TGCTGCTAAA AACAGCTG TTTGTGTTTT chr3R:13780909-13781029 78 1.50e-05 GTGGACGATA AACAGCTG TTCGGGCGGC chr3L:8576014-8576134 25 3.01e-05 TCTAATTGCG ATCAGCTG TTAGCACTCG chr2L:12207682-12207802 46 3.01e-05 CTCTCTCAAG ATCAGCTG TTTCTCAATG chr3R:24038831-24038951 78 3.01e-05 TCGCTGATTT ATCAGCTG TTTTGTATTT chr3R:20592609-20592729 65 3.01e-05 TCTGTTACGG ATCAGCTG TTTTATTTAA chrX:6968708-6968828 15 3.01e-05 CACGCGGGCG ATCAGCTG GCCGGCAGTG chr3R:11231865-11231985 13 3.01e-05 TGTTTACTGG ATCAGCTG TTCGCTGCAA chr2R:17518156-17518276 21 3.01e-05 AGACGCACAA ATCAGCTG TTTGTTTTTA chrX:8121073-8121193 60 3.01e-05 TCTTCTTCAA ATCAGCTG TCCCGGAGTG chr3R:19641241-19641361 3 4.37e-05 AA ACCAGCTG GGTTTTTTTG chrX:19240403-19240523 102 4.37e-05 ATATTTGGCT ACCAGCTG TGCCCCCAGA chrX:17302609-17302729 76 4.37e-05 GCCCTTTAAA ACCAGCTG CTGCATCTGT chr2R:16127365-16127485 89 4.37e-05 GCATTGGATC ACCAGCTG CAGTGCACGT chrX:6684248-6684368 103 5.75e-05 acgaaacgaC AGCAGCTG TTTGGTTATA chr2L:6614352-6614472 65 5.75e-05 TTGTAATTTG AGCAGCTG CCCCGTCGTC chrX:13680346-13680466 67 5.75e-05 aactaaactG AGCAGCTG ACATGTGCGG chr3L:17238319-17238439 101 7.12e-05 ACTTCAGCAT CACAGCTG ATAAGTGATA chr3L:8725378-8725498 96 7.12e-05 ATGTGCGAAA CACAGCTG GCCCCGCGAC chr2R:20278850-20278970 85 8.49e-05 GGCTGTTAAG CTCAGCTG TTCGGTATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21708431-21708551 1.5e-05 38_[+3]_74 chr3R:31736953-31737073 1.5e-05 98_[+3]_14 chr2L:2979236-2979356 1.5e-05 42_[+3]_70 chr2R:24668238-24668358 1.5e-05 99_[+3]_13 chr2R:17048944-17049064 1.5e-05 21_[+3]_91 chr2L:18698870-18698990 1.5e-05 29_[+3]_83 chrX:15733672-15733792 1.5e-05 98_[+3]_14 chr3R:13780909-13781029 1.5e-05 77_[+3]_35 chr3L:8576014-8576134 3e-05 24_[+3]_88 chr2L:12207682-12207802 3e-05 45_[+3]_67 chr3R:24038831-24038951 3e-05 77_[+3]_35 chr3R:20592609-20592729 3e-05 64_[+3]_48 chrX:6968708-6968828 3e-05 14_[+3]_98 chr3R:11231865-11231985 3e-05 12_[+3]_100 chr2R:17518156-17518276 3e-05 20_[+3]_92 chrX:8121073-8121193 3e-05 59_[+3]_53 chr3R:19641241-19641361 4.4e-05 2_[+3]_110 chrX:19240403-19240523 4.4e-05 101_[+3]_11 chrX:17302609-17302729 4.4e-05 75_[+3]_37 chr2R:16127365-16127485 4.4e-05 88_[+3]_24 chrX:6684248-6684368 5.8e-05 102_[+3]_10 chr2L:6614352-6614472 5.8e-05 64_[+3]_48 chrX:13680346-13680466 5.8e-05 66_[+3]_46 chr3L:17238319-17238439 7.1e-05 100_[+3]_12 chr3L:8725378-8725498 7.1e-05 95_[+3]_17 chr2R:20278850-20278970 8.5e-05 84_[+3]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWCAGCTG width=8 seqs=26 chr2R:21708431-21708551 ( 39) AACAGCTG 1 chr3R:31736953-31737073 ( 99) AACAGCTG 1 chr2L:2979236-2979356 ( 43) AACAGCTG 1 chr2R:24668238-24668358 ( 100) AACAGCTG 1 chr2R:17048944-17049064 ( 22) AACAGCTG 1 chr2L:18698870-18698990 ( 30) AACAGCTG 1 chrX:15733672-15733792 ( 99) AACAGCTG 1 chr3R:13780909-13781029 ( 78) AACAGCTG 1 chr3L:8576014-8576134 ( 25) ATCAGCTG 1 chr2L:12207682-12207802 ( 46) ATCAGCTG 1 chr3R:24038831-24038951 ( 78) ATCAGCTG 1 chr3R:20592609-20592729 ( 65) ATCAGCTG 1 chrX:6968708-6968828 ( 15) ATCAGCTG 1 chr3R:11231865-11231985 ( 13) ATCAGCTG 1 chr2R:17518156-17518276 ( 21) ATCAGCTG 1 chrX:8121073-8121193 ( 60) ATCAGCTG 1 chr3R:19641241-19641361 ( 3) ACCAGCTG 1 chrX:19240403-19240523 ( 102) ACCAGCTG 1 chrX:17302609-17302729 ( 76) ACCAGCTG 1 chr2R:16127365-16127485 ( 89) ACCAGCTG 1 chrX:6684248-6684368 ( 103) AGCAGCTG 1 chr2L:6614352-6614472 ( 65) AGCAGCTG 1 chrX:13680346-13680466 ( 67) AGCAGCTG 1 chr3L:17238319-17238439 ( 101) CACAGCTG 1 chr3L:8725378-8725498 ( 96) CACAGCTG 1 chr2R:20278850-20278970 ( 85) CTCAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.83953 E= 3.5e-005 177 -104 -1134 -1134 57 -62 -106 39 -1134 208 -1134 -1134 194 -1134 -1134 -1134 -1134 -1134 206 -1134 -1134 208 -1134 -1134 -1134 -1134 -1134 193 -1134 -1134 206 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 3.5e-005 0.884615 0.115385 0.000000 0.000000 0.384615 0.153846 0.115385 0.346154 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 regular expression -------------------------------------------------------------------------------- A[AT]CAGCTG -------------------------------------------------------------------------------- Time 19.10 secs. ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-4 width = 8 sites = 21 llr = 205 E-value = 1.5e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:::a:9 pos.-specific C 2::a:::: probability G ::::a::: matrix T 8:a:::a1 bits 2.1 ** 1.9 ***** 1.7 ****** 1.5 ******* Relative 1.2 ******* Entropy 1.0 ******** (14.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:15346116-15346236 53 1.82e-05 ATCGCTGCGT TATCGATA GCCAATGGGC chr3L:16730772-16730892 49 1.82e-05 AAAAACATAT TATCGATA TCGGGCTCTG chrX:15762885-15763005 48 1.82e-05 TGCCATCGTA TATCGATA CATCCTCGAT chr2L:7222981-7223101 75 1.82e-05 ACAAGACTGC TATCGATA TGCGAAGGCG chr2R:21097254-21097374 74 1.82e-05 GTTATCGACT TATCGATA GCCACGGCCA chrX:19616135-19616255 50 1.82e-05 TGTTGCGTGC TATCGATA GACGGTGGAA chr2R:22483252-22483372 54 1.82e-05 GCCGACTGTC TATCGATA ACAGTGCGTA chrX:8901634-8901754 34 1.82e-05 TCATCGGTGC TATCGATA ATGCCAACCG chr2L:9893383-9893503 46 1.82e-05 TTTTCCATGT TATCGATA TCGAAAGTGA chr2R:23939695-23939815 75 1.82e-05 TACACAGACA TATCGATA GCTCCTAGAG chr2R:16347450-16347570 78 1.82e-05 ACGGTGGATT TATCGATA AGTGTGACCA chrX:1353956-1354076 65 1.82e-05 TACCATCCGA TATCGATA ACCAAACCGG chr3L:4406023-4406143 92 1.82e-05 AGCGGGCTCT TATCGATA GCGCAAATAA chr3L:21335155-21335275 37 3.46e-05 CATCGCCCAA CATCGATA TCAAGAGAAA chrX:19240403-19240523 27 3.46e-05 ACTATGGATC CATCGATA AGGTGATAAG chrX:4319395-4319515 19 3.46e-05 TACCCCATGC CATCGATA CGGCAGCTCG chrX:9556532-9556652 3 3.46e-05 GT CATCGATA ACACGAAAAC chrX:16599196-16599316 1 5.30e-05 . TATCGATT AGCACACGCT chr2R:14601123-14601243 88 5.30e-05 GGTGGAACCG TATCGATT TTAACGGTCA chr3R:12456462-12456582 53 7.10e-05 TATCTTTTAA AATCGATA GTACCATGTG chr2L:6614352-6614472 26 8.73e-05 CTTGATTTCC TATCGACA AGCTGCAGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:15346116-15346236 1.8e-05 52_[+4]_60 chr3L:16730772-16730892 1.8e-05 48_[+4]_64 chrX:15762885-15763005 1.8e-05 47_[+4]_65 chr2L:7222981-7223101 1.8e-05 74_[+4]_38 chr2R:21097254-21097374 1.8e-05 73_[+4]_39 chrX:19616135-19616255 1.8e-05 49_[+4]_63 chr2R:22483252-22483372 1.8e-05 53_[+4]_59 chrX:8901634-8901754 1.8e-05 33_[+4]_79 chr2L:9893383-9893503 1.8e-05 45_[+4]_67 chr2R:23939695-23939815 1.8e-05 74_[+4]_38 chr2R:16347450-16347570 1.8e-05 77_[+4]_35 chrX:1353956-1354076 1.8e-05 64_[+4]_48 chr3L:4406023-4406143 1.8e-05 91_[+4]_21 chr3L:21335155-21335275 3.5e-05 36_[+4]_76 chrX:19240403-19240523 3.5e-05 26_[+4]_86 chrX:4319395-4319515 3.5e-05 18_[+4]_94 chrX:9556532-9556652 3.5e-05 2_[+4]_110 chrX:16599196-16599316 5.3e-05 [+4]_112 chr2R:14601123-14601243 5.3e-05 87_[+4]_25 chr3R:12456462-12456582 7.1e-05 52_[+4]_60 chr2L:6614352-6614472 8.7e-05 25_[+4]_87 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=21 chr3R:15346116-15346236 ( 53) TATCGATA 1 chr3L:16730772-16730892 ( 49) TATCGATA 1 chrX:15762885-15763005 ( 48) TATCGATA 1 chr2L:7222981-7223101 ( 75) TATCGATA 1 chr2R:21097254-21097374 ( 74) TATCGATA 1 chrX:19616135-19616255 ( 50) TATCGATA 1 chr2R:22483252-22483372 ( 54) TATCGATA 1 chrX:8901634-8901754 ( 34) TATCGATA 1 chr2L:9893383-9893503 ( 46) TATCGATA 1 chr2R:23939695-23939815 ( 75) TATCGATA 1 chr2R:16347450-16347570 ( 78) TATCGATA 1 chrX:1353956-1354076 ( 65) TATCGATA 1 chr3L:4406023-4406143 ( 92) TATCGATA 1 chr3L:21335155-21335275 ( 37) CATCGATA 1 chrX:19240403-19240523 ( 27) CATCGATA 1 chrX:4319395-4319515 ( 19) CATCGATA 1 chrX:9556532-9556652 ( 3) CATCGATA 1 chrX:16599196-16599316 ( 1) TATCGATT 1 chr2R:14601123-14601243 ( 88) TATCGATT 1 chr3R:12456462-12456582 ( 53) AATCGATA 1 chr2L:6614352-6614472 ( 26) TATCGACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6976 E= 1.5e-001 -244 -31 -1104 153 194 -1104 -1104 -1104 -1104 -1104 -1104 192 -1104 208 -1104 -1104 -1104 -1104 206 -1104 194 -1104 -1104 -1104 -1104 -231 -1104 185 180 -1104 -1104 -147 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.5e-001 0.047619 0.190476 0.000000 0.761905 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.047619 0.000000 0.952381 0.904762 0.000000 0.000000 0.095238 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 regular expression -------------------------------------------------------------------------------- TATCGATA -------------------------------------------------------------------------------- Time 24.85 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTCACAC MEME-5 width = 8 sites = 10 llr = 107 E-value = 2.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTCACAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a:a: pos.-specific C ::2a:a:a probability G aa:::::: matrix T ::8::::: bits 2.1 ** * * * 1.9 ** ***** 1.7 ** ***** 1.5 ** ***** Relative 1.2 ******** Entropy 1.0 ******** (15.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGTCACAC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:20391357-20391477 93 1.36e-05 ATTCGAGCGC GGTCACAC TGAGCACGTG chrX:15762885-15763005 94 1.36e-05 GCCGCGAAGC GGTCACAC TAAATCCAAC chrX:6968708-6968828 72 1.36e-05 TCCGACAATT GGTCACAC ATTCGACGAG chr2R:17518156-17518276 63 1.36e-05 TGCGTGCTCT GGTCACAC TGCGCAGCAC chr3R:32052616-32052736 3 1.36e-05 AC GGTCACAC TGTTCTGTCC chr2R:10875714-10875834 40 1.36e-05 AATAGGATCT GGTCACAC AACCTGCCTT chr2R:5754494-5754614 19 1.36e-05 ATGTTCCTGC GGTCACAC TAAAACTGAA chrX:8117007-8117127 21 1.36e-05 ATATTTACTT GGTCACAC TGTCCACCAC chrX:2585915-2586035 34 2.59e-05 GGTGCGCAAC GGCCACAC TGACGCGCTG chr2R:21624945-21625065 97 2.59e-05 AATAGCAAAA GGCCACAC TAATTTTGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:20391357-20391477 1.4e-05 92_[+5]_20 chrX:15762885-15763005 1.4e-05 93_[+5]_19 chrX:6968708-6968828 1.4e-05 71_[+5]_41 chr2R:17518156-17518276 1.4e-05 62_[+5]_50 chr3R:32052616-32052736 1.4e-05 2_[+5]_110 chr2R:10875714-10875834 1.4e-05 39_[+5]_73 chr2R:5754494-5754614 1.4e-05 18_[+5]_94 chrX:8117007-8117127 1.4e-05 20_[+5]_92 chrX:2585915-2586035 2.6e-05 33_[+5]_79 chr2R:21624945-21625065 2.6e-05 96_[+5]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTCACAC width=8 seqs=10 chrX:20391357-20391477 ( 93) GGTCACAC 1 chrX:15762885-15763005 ( 94) GGTCACAC 1 chrX:6968708-6968828 ( 72) GGTCACAC 1 chr2R:17518156-17518276 ( 63) GGTCACAC 1 chr3R:32052616-32052736 ( 3) GGTCACAC 1 chr2R:10875714-10875834 ( 40) GGTCACAC 1 chr2R:5754494-5754614 ( 19) GGTCACAC 1 chrX:8117007-8117127 ( 21) GGTCACAC 1 chrX:2585915-2586035 ( 34) GGCCACAC 1 chr2R:21624945-21625065 ( 97) GGCCACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 2.8e+003 -997 -997 206 -997 -997 -997 206 -997 -997 -24 -997 160 -997 208 -997 -997 194 -997 -997 -997 -997 208 -997 -997 194 -997 -997 -997 -997 208 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.8e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-5 regular expression -------------------------------------------------------------------------------- GG[TC]CACAC -------------------------------------------------------------------------------- Time 30.56 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:8725378-8725498 4.21e-03 95_[+3(7.12e-05)]_17 chr2R:24014359-24014479 4.22e-01 120 chrX:15450417-15450537 1.01e-01 120 chr3R:29049445-29049565 8.16e-02 120 chr3R:12689234-12689354 1.26e-01 120 chrX:9556532-9556652 7.81e-04 2_[+4(3.46e-05)]_110 chrX:11349001-11349121 3.98e-01 120 chrX:22481225-22481345 2.73e-01 120 chr3L:1549920-1550040 1.68e-01 120 chr3L:17054055-17054175 2.63e-02 120 chr3L:5777248-5777368 6.70e-02 120 chr2L:2010494-2010614 7.46e-03 33_[+1(4.02e-05)]_79 chr3R:16272334-16272454 1.47e-02 43_[+1(2.65e-05)]_69 chr2R:14171145-14171265 5.82e-01 120 chr3L:21501316-21501436 1.21e-01 120 chr2R:17420368-17420488 6.46e-01 120 chr2R:23933268-23933388 3.38e-02 22_[+1(5.53e-05)]_90 chrX:12905796-12905916 7.21e-02 120 chrX:3370740-3370860 1.53e-02 66_[+1(2.65e-05)]_46 chr2L:10510295-10510415 3.49e-02 120 chrX:1232678-1232798 6.41e-02 120 chrX:13741518-13741638 1.32e-01 120 chr3R:9631620-9631740 3.35e-02 47_[+1(9.43e-05)]_65 chr2L:21156748-21156868 5.25e-01 120 chrX:16791186-16791306 2.34e-01 120 chr2L:2873892-2874012 3.78e-02 21_[+1(2.65e-05)]_91 chr2R:14275141-14275261 1.51e-01 120 chr3R:4649996-4650116 1.95e-02 120 chr2R:16127365-16127485 1.20e-02 88_[+3(4.37e-05)]_4_[+1(9.43e-05)]_\ 12 chr3L:17238319-17238439 4.83e-02 100_[+3(7.12e-05)]_12 chr2R:12170633-12170753 1.29e-01 120 chr3L:17804654-17804774 4.00e-02 25_[+1(1.26e-05)]_87 chr3L:4406023-4406143 1.77e-03 25_[+1(5.53e-05)]_58_[+4(1.82e-05)]_\ 21 chrX:841252-841372 2.26e-01 120 chr3R:13780909-13781029 2.45e-03 61_[+1(5.53e-05)]_8_[+3(1.50e-05)]_\ 35 chrX:8059778-8059898 2.59e-01 60_[+1(6.77e-05)]_52 chr3L:16157064-16157184 2.15e-01 120 chr2R:9927031-9927151 5.90e-03 84_[+1(2.65e-05)]_28 chr3R:22446594-22446714 1.34e-04 12_[+2(7.92e-05)]_7_[+1(4.02e-05)]_\ 85 chrX:10845128-10845248 1.73e-01 89_[+1(6.77e-05)]_23 chr3R:7947474-7947594 8.82e-01 120 chr2L:18698671-18698791 9.49e-02 62_[+1(4.02e-05)]_50 chr3L:9624164-9624284 4.06e-02 89_[+1(2.65e-05)]_23 chr2L:4968929-4969049 2.09e-02 105_[+1(4.02e-05)]_7 chrX:17883123-17883243 9.64e-04 59_[+1(4.02e-05)]_53 chrX:1353956-1354076 2.40e-04 64_[+4(1.82e-05)]_21_[+1(1.26e-05)]_\ 19 chrX:3530849-3530969 3.24e-01 65_[+1(9.43e-05)]_47 chrX:654470-654590 4.94e-01 120 chr2R:15984474-15984594 3.49e-01 120 chr3R:8712234-8712354 1.47e-01 120 chrX:8121073-8121193 2.64e-03 34_[+1(1.26e-05)]_17_[+3(3.01e-05)]_\ 53 chr3L:6998830-6998950 5.10e-02 120 chr3L:4185526-4185646 2.85e-01 120 chr2L:13207169-13207289 2.46e-03 28_[+1(2.65e-05)]_84 chrX:8116123-8116243 2.40e-03 24_[+3(9.74e-05)]_76_[+1(2.65e-05)]_\ 4 chrX:15733672-15733792 7.70e-04 71_[+1(2.65e-05)]_19_[+3(1.50e-05)]_\ 14 chr2R:14621911-14622031 1.46e-01 120 chrX:8117007-8117127 1.54e-03 20_[+5(1.36e-05)]_92 chr2R:5754494-5754614 7.00e-04 18_[+5(1.36e-05)]_40_[+1(1.26e-05)]_\ 46 chrX:637077-637197 4.39e-02 98_[+1(2.65e-05)]_14 chr2L:21178983-21179103 3.63e-02 120 chrX:10083135-10083255 6.94e-03 49_[+1(4.02e-05)]_63 chr2L:9333592-9333712 3.28e-01 120 chr2R:17870999-17871119 7.47e-04 120 chr3R:9950141-9950261 1.92e-03 [+2(1.44e-05)]_94_[+1(2.65e-05)]_10 chr2R:23672113-23672233 9.75e-02 120 chrX:13680346-13680466 4.69e-03 66_[+3(5.75e-05)]_46 chr3R:27947999-27948119 2.42e-02 120 chr2R:16347450-16347570 6.54e-05 12_[+1(4.02e-05)]_57_[+4(1.82e-05)]_\ 10_[+4(3.46e-05)]_17 chr2R:10875714-10875834 2.33e-04 39_[+5(1.36e-05)]_19_[+1(2.65e-05)]_\ 46 chr3L:4253746-4253866 1.13e-01 120 chrX:11108905-11109025 2.04e-01 120 chr3R:15262824-15262944 1.29e-01 120 chr2L:18698870-18698990 1.64e-02 29_[+3(1.50e-05)]_83 chrX:13624372-13624492 7.34e-01 120 chr3R:5843700-5843820 7.42e-02 59_[+1(2.65e-05)]_53 chrX:13718051-13718171 2.65e-01 120 chr3R:24566882-24567002 8.08e-01 120 chrX:9600599-9600719 1.15e-03 38_[+2(1.44e-05)]_6_[+1(6.77e-05)]_\ 60 chr3R:32052616-32052736 8.86e-04 2_[+5(1.36e-05)]_17_[+1(6.77e-05)]_\ 85 chr3L:211274-211394 3.76e-01 120 chr3L:3309109-3309229 4.59e-01 120 chr2L:6614352-6614472 2.11e-02 25_[+4(8.73e-05)]_31_[+3(5.75e-05)]_\ 48 chrX:17163913-17164033 3.28e-01 120 chrX:2142703-2142823 6.43e-01 120 chr3R:4428712-4428832 9.14e-02 27_[+1(9.43e-05)]_85 chr2L:7203720-7203840 3.46e-01 120 chrX:2286412-2286532 4.75e-01 120 chrX:6352629-6352749 3.08e-01 120 chr3L:12537234-12537354 2.20e-03 40_[+1(2.65e-05)]_72 chr3R:11412558-11412678 9.67e-01 120 chr2R:17518156-17518276 3.29e-05 20_[+3(3.01e-05)]_34_[+5(1.36e-05)]_\ 50 chr2R:23939695-23939815 6.45e-05 20_[+1(5.53e-05)]_46_[+4(1.82e-05)]_\ 38 chr3R:24319753-24319873 1.99e-01 120 chrX:11147823-11147943 3.38e-02 120 chr3R:9011874-9011994 3.42e-01 120 chrX:9201208-9201328 1.61e-01 120 chr3L:12519457-12519577 3.07e-01 120 chrX:16633717-16633837 8.95e-01 120 chr3R:11231865-11231985 2.86e-03 12_[+3(3.01e-05)]_100 chrX:1927949-1928069 5.17e-02 120 chr3L:9689950-9690070 7.47e-03 16_[+2(1.44e-05)]_[+2(1.44e-05)]_2_\ [+2(1.44e-05)]_78 chr2R:21076841-21076961 8.08e-01 120 chr3R:8670201-8670321 3.28e-01 59_[+1(9.43e-05)]_53 chr2L:9893383-9893503 1.10e-02 45_[+4(1.82e-05)]_67 chrX:2339591-2339711 3.35e-01 120 chr2R:17048944-17049064 3.85e-02 21_[+3(1.50e-05)]_91 chr3L:21172993-21173113 2.01e-01 23_[+1(9.43e-05)]_89 chrX:9103377-9103497 4.60e-01 120 chrX:625217-625337 3.21e-01 120 chr2L:3480053-3480173 1.16e-01 120 chr2R:9601801-9601921 4.50e-03 104_[+2(1.44e-05)]_8 chrX:8901634-8901754 5.39e-04 33_[+4(1.82e-05)]_22_[+4(1.82e-05)]_\ 23_[+1(2.65e-05)]_18 chr3L:20387437-20387557 5.20e-02 120 chr3R:13032423-13032543 4.79e-03 49_[+2(9.66e-05)]_63 chr3L:8297665-8297785 2.05e-01 120 chr2R:21295988-21296108 3.00e-04 81_[+1(4.02e-05)]_1_[+3(8.49e-05)]_\ 13_[+3(8.49e-05)]_1 chrX:17302609-17302729 5.60e-02 75_[+3(4.37e-05)]_37 chr3R:7947675-7947795 1.99e-01 120 chr2R:17593156-17593276 5.69e-01 120 chr2R:14601123-14601243 2.79e-04 57_[+1(2.65e-05)]_22_[+4(5.30e-05)]_\ 25 chr3L:7855458-7855578 2.80e-01 120 chrX:3440783-3440903 1.64e-02 76_[+1(4.02e-05)]_36 chrX:5916156-5916276 1.72e-01 120 chr3R:29067191-29067311 9.57e-01 120 chr2R:19357115-19357235 5.34e-01 120 chr3R:22583175-22583295 1.78e-02 22_[+1(4.02e-05)]_90 chr2R:22483252-22483372 6.54e-04 53_[+4(1.82e-05)]_20_[+1(2.65e-05)]_\ 31 chrX:16599196-16599316 5.05e-04 [+4(5.30e-05)]_67_[+5(2.59e-05)]_37 chrX:12667787-12667907 3.38e-01 120 chrX:4319395-4319515 2.40e-03 18_[+4(3.46e-05)]_17_[+4(3.46e-05)]_\ 30_[+1(1.26e-05)]_31 chr2R:24668238-24668358 5.99e-03 65_[+1(9.43e-05)]_26_[+3(1.50e-05)]_\ 13 chr2R:17435803-17435923 2.98e-02 120 chr3R:17060953-17061073 1.01e-01 120 chr2R:14870623-14870743 1.31e-02 [+2(1.44e-05)]_112 chr3L:2599268-2599388 9.87e-01 120 chr2L:1987545-1987665 7.85e-01 120 chr2R:20654930-20655050 3.35e-02 67_[+2(4.61e-05)]_45 chr2L:142467-142587 4.39e-01 120 chrX:19616135-19616255 4.86e-05 29_[+2(3.02e-05)]_12_[+4(1.82e-05)]_\ 13_[+1(4.02e-05)]_42 chr2R:12279537-12279657 3.73e-01 120 chr2L:8955739-8955859 9.21e-01 120 chr3L:5643846-5643966 6.89e-01 120 chrX:5317352-5317472 5.68e-02 85_[+1(2.65e-05)]_27 chr3L:11272364-11272484 7.32e-01 120 chrX:13321299-13321419 6.26e-01 120 chr2R:21097254-21097374 1.63e-04 7_[+1(4.02e-05)]_58_[+4(1.82e-05)]_\ 39 chr2L:7451090-7451210 9.20e-01 120 chrX:18789344-18789464 1.58e-01 35_[+1(2.65e-05)]_77 chr2L:9699734-9699854 2.73e-02 83_[+1(2.65e-05)]_29 chrX:1928150-1928270 5.26e-01 120 chr2R:20278850-20278970 4.73e-02 84_[+3(8.49e-05)]_28 chrX:6743492-6743612 6.99e-02 92_[+1(4.02e-05)]_20 chr3R:9710393-9710513 5.05e-01 120 chr3L:9095763-9095883 3.70e-01 120 chr3L:22738314-22738434 3.11e-02 47_[+1(2.65e-05)]_65 chr2L:5724891-5725011 1.48e-01 120 chrX:16793275-16793395 1.96e-01 120 chr2R:14575717-14575837 1.60e-01 120 chr2L:20084207-20084327 6.96e-02 51_[+1(9.43e-05)]_61 chr2R:12530450-12530570 3.11e-02 120 chr3R:20784749-20784869 1.16e-03 18_[+1(9.43e-05)]_23_[+2(3.02e-05)]_\ 63 chr2R:9190900-9191020 5.39e-03 67_[+1(1.26e-05)]_45 chr3R:10084323-10084443 2.19e-01 120 chr2L:5303385-5303505 6.59e-01 120 chr2L:7222981-7223101 2.19e-02 74_[+4(1.82e-05)]_38 chr2R:16641001-16641121 2.80e-01 120 chr3R:10093894-10094014 2.11e-03 59_[+2(1.44e-05)]_53 chrX:19578157-19578277 2.04e-03 51_[+1(4.02e-05)]_32_[+2(3.02e-05)]_\ 21 chrX:6968708-6968828 6.80e-04 14_[+3(3.01e-05)]_49_[+5(1.36e-05)]_\ 41 chr2R:22180428-22180548 3.87e-02 120 chr3R:20592609-20592729 1.60e-03 25_[+1(5.53e-05)]_31_[+3(3.01e-05)]_\ 48 chr3R:8358128-8358248 5.00e-01 120 chr3R:7790647-7790767 2.15e-01 120 chr2R:6644001-6644121 6.00e-04 1_[+1(1.26e-05)]_111 chr2R:21624945-21625065 2.97e-04 96_[+5(2.59e-05)]_16 chr3R:24038831-24038951 3.54e-03 7_[+2(3.02e-05)]_62_[+3(3.01e-05)]_\ 35 chr3L:21434155-21434275 3.41e-02 22_[+2(9.66e-05)]_90 chrX:6684248-6684368 4.47e-03 27_[+2(3.02e-05)]_18_[+2(7.92e-05)]_\ 41_[+3(5.75e-05)]_10 chr3L:15494084-15494204 2.60e-03 46_[+1(4.02e-05)]_41_[+2(7.92e-05)]_\ 17 chr3R:13017891-13018011 3.61e-01 120 chr2L:12207682-12207802 9.54e-04 45_[+3(3.01e-05)]_48_[+3(1.50e-05)]_\ 11 chrX:15762885-15763005 3.22e-05 29_[+5(1.36e-05)]_10_[+4(1.82e-05)]_\ 38_[+5(1.36e-05)]_19 chr2R:9137568-9137688 9.06e-02 120 chr3L:3472057-3472177 6.28e-02 120 chrX:19240403-19240523 1.58e-04 26_[+4(3.46e-05)]_67_[+3(4.37e-05)]_\ 11 chrX:20391357-20391477 3.78e-03 92_[+5(1.36e-05)]_3_[+1(9.43e-05)]_\ 9 chr3R:27608228-27608348 2.14e-01 120 chrX:4617529-4617649 3.59e-01 120 chr2L:2979236-2979356 2.40e-03 42_[+3(1.50e-05)]_70 chr3L:16730772-16730892 1.59e-04 5_[+1(2.65e-05)]_24_[+2(7.92e-05)]_\ 3_[+4(1.82e-05)]_64 chrX:17579852-17579972 2.91e-01 120 chr2R:10052525-10052645 8.38e-01 120 chr3L:11689974-11690094 3.15e-01 120 chrX:3696879-3696999 1.40e-01 31_[+1(6.77e-05)]_81 chr2R:9745285-9745405 7.33e-01 120 chr3L:19263958-19264078 4.48e-01 120 chr3R:31736953-31737073 7.79e-05 98_[+3(1.50e-05)]_2_[+1(4.02e-05)]_\ 4 chrX:16599397-16599517 2.76e-01 120 chr2R:6050772-6050892 3.65e-01 120 chr3L:7775501-7775621 8.34e-01 120 chr2L:16530172-16530292 2.21e-04 83_[+2(1.44e-05)]_16_[+1(4.02e-05)]_\ 5 chr3L:15501704-15501824 3.37e-02 49_[+1(6.77e-05)]_63 chr3R:14020746-14020866 7.80e-02 120 chr3L:20474454-20474574 7.22e-01 120 chr3L:21972767-21972887 2.06e-02 120 chr3L:21335155-21335275 1.96e-02 36_[+4(3.46e-05)]_76 chrX:2585915-2586035 4.54e-03 33_[+5(2.59e-05)]_79 chr3L:7833826-7833946 9.75e-06 1_[+1(2.65e-05)]_3_[+5(5.18e-05)]_4_\ [+2(1.44e-05)]_88 chr2R:10108554-10108674 9.38e-05 4_[+2(1.44e-05)]_12_[+2(1.44e-05)]_\ 20_[+1(1.26e-05)]_60 chr2L:8707758-8707878 6.34e-02 74_[+1(5.53e-05)]_38 chr2R:18514368-18514488 1.76e-01 3_[+1(6.77e-05)]_109 chr3R:13382680-13382800 7.60e-01 120 chr3L:7835238-7835358 6.42e-04 19_[+1(6.77e-05)]_53_[+2(1.44e-05)]_\ 11_[+2(7.92e-05)]_13 chr2R:23872181-23872301 1.80e-02 120 chr3R:15278574-15278694 1.17e-01 120 chr3R:12441365-12441485 1.23e-01 120 chr3R:23773997-23774117 4.84e-02 120 chr3L:8576014-8576134 3.18e-04 24_[+3(3.01e-05)]_88 chr2L:1102536-1102656 4.65e-01 120 chr2R:16000169-16000289 9.18e-01 120 chr3L:7773653-7773773 4.18e-02 120 chrX:1843019-1843139 2.45e-03 12_[+1(9.43e-05)]_33_[+2(3.02e-05)]_\ 59 chr3R:19641241-19641361 3.78e-03 2_[+3(4.37e-05)]_110 chr2L:3507267-3507387 1.16e-01 120 chr2L:16316014-16316134 9.38e-05 4_[+1(4.02e-05)]_14_[+2(1.44e-05)]_\ 86 chr3R:22584697-22584817 3.90e-02 97_[+1(6.77e-05)]_15 chr3R:15346116-15346236 1.35e-03 52_[+4(1.82e-05)]_60 chr3R:8523825-8523945 5.16e-01 120 chr3R:15198655-15198775 8.61e-03 59_[+2(4.61e-05)]_53 chr2R:14360213-14360333 1.41e-01 120 chr3R:12456462-12456582 1.07e-02 52_[+4(7.10e-05)]_60 chr2R:21708431-21708551 3.81e-03 38_[+3(1.50e-05)]_74 chr3R:29230819-29230939 2.52e-02 120 chr3L:20524552-20524672 8.25e-01 120 chr3R:5364807-5364927 6.87e-01 120 chr2R:21701384-21701504 2.74e-01 120 chr2L:8989089-8989209 9.48e-01 120 chrX:22456261-22456381 9.08e-02 120 chrX:12716053-12716173 1.90e-01 120 chrX:3968440-3968560 6.59e-02 17_[+1(9.43e-05)]_95 chr3R:6456394-6456514 1.38e-01 120 chr2L:6472086-6472206 2.34e-01 120 chrX:9164288-9164408 1.34e-01 120 chr2L:20098040-20098160 1.32e-01 120 chr3R:10394544-10394664 1.30e-02 47_[+2(6.19e-05)]_65 chr2R:18627913-18628033 9.06e-02 38_[+1(9.43e-05)]_74 chrX:11149386-11149506 8.43e-02 120 chr3R:27926844-27926964 6.59e-04 4_[+1(6.77e-05)]_80_[+2(3.02e-05)]_\ 20 chr2L:12096437-12096557 9.50e-04 5_[+2(9.66e-05)]_8_[+1(2.65e-05)]_\ 91 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************