******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Mio.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:15262-15382 1.0000 120 chrM:4365-4485 1.0000 120 chrM:16016-16136 1.0000 120 chrM:17265-17385 1.0000 120 chrM:19289-19409 1.0000 120 chrM:13983-14103 1.0000 120 chrM:9771-9891 1.0000 120 chrM:6145-6265 1.0000 120 chrX:22433028-22433148 1.0000 120 chrM:7080-7200 1.0000 120 chrM:185-305 1.0000 120 chrM:12973-13093 1.0000 120 chrM:11345-11465 1.0000 120 chrM:13230-13350 1.0000 120 chrM:382-502 1.0000 120 chr2L:21313216-21313336 1.0000 120 chrM:12119-12239 1.0000 120 chrM:5414-5534 1.0000 120 chrM:14523-14643 1.0000 120 chrM:12362-12482 1.0000 120 chrM:2785-2905 1.0000 120 chrM:7290-7410 1.0000 120 chrM:3541-3661 1.0000 120 chrM:5215-5335 1.0000 120 chrM:1840-1960 1.0000 120 chr2L:1668763-1668883 1.0000 120 chr3R:9675141-9675261 1.0000 120 chrM:10741-10861 1.0000 120 chrM:8808-8928 1.0000 120 chrM:8608-8728 1.0000 120 chrM:14318-14438 1.0000 120 chr3R:30103026-30103146 1.0000 120 chr3L:7792343-7792463 1.0000 120 chr3R:24582086-24582206 1.0000 120 chr2R:9915203-9915323 1.0000 120 chr3R:29076157-29076277 1.0000 120 chr2R:12586876-12586996 1.0000 120 chr3R:20765865-20765985 1.0000 120 chr2L:21250795-21250915 1.0000 120 chr2L:165468-165588 1.0000 120 chr2L:5978836-5978956 1.0000 120 chr2R:6517811-6517931 1.0000 120 chrM:819-939 1.0000 120 chr3L:17579309-17579429 1.0000 120 chr2R:24964204-24964324 1.0000 120 chr2R:7063827-7063947 1.0000 120 chr3R:23210973-23211093 1.0000 120 chrX:1611895-1612015 1.0000 120 chr3L:7867494-7867614 1.0000 120 chrX:10728181-10728301 1.0000 120 chr3L:13488486-13488606 1.0000 120 chr2R:18806286-18806406 1.0000 120 chr3L:10739275-10739395 1.0000 120 chr3R:5671181-5671301 1.0000 120 chr2L:530362-530482 1.0000 120 chr3R:19603123-19603243 1.0000 120 chr2R:12870142-12870262 1.0000 120 chrX:4610567-4610687 1.0000 120 chr3L:8702661-8702781 1.0000 120 chr3R:18298310-18298430 1.0000 120 chrX:7931170-7931290 1.0000 120 chr3R:5281275-5281395 1.0000 120 chrX:6759556-6759676 1.0000 120 chr2R:23818379-23818499 1.0000 120 chr2L:8859983-8860103 1.0000 120 chr2L:15743772-15743892 1.0000 120 chr2L:484749-484869 1.0000 120 chr2R:11638456-11638576 1.0000 120 chr3L:14672771-14672891 1.0000 120 chr2R:18269802-18269922 1.0000 120 chr3L:20518658-20518778 1.0000 120 chrM:9972-10092 1.0000 120 chr2L:2200389-2200509 1.0000 120 chr3L:224116-224236 1.0000 120 chrX:18366169-18366289 1.0000 120 chr3L:3247546-3247666 1.0000 120 chr3R:7082085-7082205 1.0000 120 chr3R:14361756-14361876 1.0000 120 chr3R:21499658-21499778 1.0000 120 chrX:3053388-3053508 1.0000 120 chr3L:18195148-18195268 1.0000 120 chr2L:5292726-5292846 1.0000 120 chr3L:14544199-14544319 1.0000 120 chr3R:25027670-25027790 1.0000 120 chr3R:30276515-30276635 1.0000 120 chr3L:16802046-16802166 1.0000 120 chr2R:16731317-16731437 1.0000 120 chr3L:10660783-10660903 1.0000 120 chr3R:4810055-4810175 1.0000 120 chr3R:30280514-30280634 1.0000 120 chr3R:31698262-31698382 1.0000 120 chr3L:2554280-2554400 1.0000 120 chrX:17489987-17490107 1.0000 120 chr3L:663997-664117 1.0000 120 chr2L:13955844-13955964 1.0000 120 chr2R:8673393-8673513 1.0000 120 chr3L:18011846-18011966 1.0000 120 chr3L:3342406-3342526 1.0000 120 chr2L:7239484-7239604 1.0000 120 chr3L:73848-73968 1.0000 120 chr3R:14006856-14006976 1.0000 120 chr3R:19282436-19282556 1.0000 120 chr3R:23888688-23888808 1.0000 120 chr2L:5305390-5305510 1.0000 120 chr2R:12636541-12636661 1.0000 120 chr2L:11053073-11053193 1.0000 120 chr2L:5979988-5980108 1.0000 120 chr2R:13015684-13015804 1.0000 120 chr2L:3346301-3346421 1.0000 120 chrX:12226718-12226838 1.0000 120 chr2R:22311880-22312000 1.0000 120 chr2R:6628270-6628390 1.0000 120 chr2L:3705605-3705725 1.0000 120 chrX:17562086-17562206 1.0000 120 chr3R:29256269-29256389 1.0000 120 chr2R:14075188-14075308 1.0000 120 chr3R:18448659-18448779 1.0000 120 chr2L:2481306-2481426 1.0000 120 chr3R:15919537-15919657 1.0000 120 chr3R:21856168-21856288 1.0000 120 chr3L:15260684-15260804 1.0000 120 chr2R:12174368-12174488 1.0000 120 chr3R:18918166-18918286 1.0000 120 chr3L:13922391-13922511 1.0000 120 chr3R:26499358-26499478 1.0000 120 chr3R:5251015-5251135 1.0000 120 chr3R:29763323-29763443 1.0000 120 chrX:5887200-5887320 1.0000 120 chrX:19667056-19667176 1.0000 120 chr3R:26522266-26522386 1.0000 120 chr3R:23334417-23334537 1.0000 120 chrX:9584639-9584759 1.0000 120 chr2L:21215054-21215174 1.0000 120 chrX:21065063-21065183 1.0000 120 chr3R:6457112-6457232 1.0000 120 chrX:21373916-21374036 1.0000 120 chr3R:30259098-30259218 1.0000 120 chrX:20501215-20501335 1.0000 120 chr2L:848351-848471 1.0000 120 chrX:14481766-14481886 1.0000 120 chr3R:30285517-30285637 1.0000 120 chr3R:16991872-16991992 1.0000 120 chr3L:16803926-16804046 1.0000 120 chr2L:12010210-12010330 1.0000 120 chrX:10805750-10805870 1.0000 120 chr3L:12115212-12115332 1.0000 120 chr2R:24565529-24565649 1.0000 120 chrX:3672669-3672789 1.0000 120 chr3L:21253847-21253967 1.0000 120 chr3L:19575818-19575938 1.0000 120 chr2L:427472-427592 1.0000 120 chr2R:6134598-6134718 1.0000 120 chr3R:30272670-30272790 1.0000 120 chrX:10584575-10584695 1.0000 120 chr3R:21218978-21219098 1.0000 120 chrX:6344097-6344217 1.0000 120 chr2L:6787579-6787699 1.0000 120 chr3R:19314444-19314564 1.0000 120 chr3R:25039205-25039325 1.0000 120 chrX:13990992-13991112 1.0000 120 chr3R:10085099-10085219 1.0000 120 chr2R:11203507-11203627 1.0000 120 chr3L:21280214-21280334 1.0000 120 chr2L:1986740-1986860 1.0000 120 chr3R:21941513-21941633 1.0000 120 chrX:12574740-12574860 1.0000 120 chr2R:15252473-15252593 1.0000 120 chr2L:11184298-11184418 1.0000 120 chr3R:21605426-21605546 1.0000 120 chr3R:16099848-16099968 1.0000 120 chr2R:10025529-10025649 1.0000 120 chr2L:12424651-12424771 1.0000 120 chr2R:18147964-18148084 1.0000 120 chr3R:20309380-20309500 1.0000 120 chr2L:479118-479238 1.0000 120 chr3R:10082618-10082738 1.0000 120 chrX:3408961-3409081 1.0000 120 chr3L:17578555-17578675 1.0000 120 chr3R:21853907-21854027 1.0000 120 chr3R:8106413-8106533 1.0000 120 chr2R:21202344-21202464 1.0000 120 chr2L:14386725-14386845 1.0000 120 chr2L:11806795-11806915 1.0000 120 chr3R:30261896-30262016 1.0000 120 chr3L:3247746-3247866 1.0000 120 chr2R:16129341-16129461 1.0000 120 chrX:11499633-11499753 1.0000 120 chr2L:9897479-9897599 1.0000 120 chrX:3371358-3371478 1.0000 120 chr2L:11155207-11155327 1.0000 120 chr2R:15236949-15237069 1.0000 120 chr3L:8821768-8821888 1.0000 120 chr2L:8290932-8291052 1.0000 120 chr2R:13467013-13467133 1.0000 120 chrX:2322005-2322125 1.0000 120 chr2R:9110724-9110844 1.0000 120 chr2L:16486468-16486588 1.0000 120 chr2L:14370067-14370187 1.0000 120 chr2L:13571049-13571169 1.0000 120 chr3R:17679416-17679536 1.0000 120 chr2R:7530895-7531015 1.0000 120 chrX:13332158-13332278 1.0000 120 chr2L:5254263-5254383 1.0000 120 chr2L:1144481-1144601 1.0000 120 chr3L:2824094-2824214 1.0000 120 chrX:17297506-17297626 1.0000 120 chr3R:10134437-10134557 1.0000 120 chr3R:8119476-8119596 1.0000 120 chrX:1948667-1948787 1.0000 120 chr2R:6537809-6537929 1.0000 120 chr2L:13514683-13514803 1.0000 120 chr3L:16194006-16194126 1.0000 120 chr2R:23240490-23240610 1.0000 120 chr3L:4239629-4239749 1.0000 120 chr3R:29277174-29277294 1.0000 120 chr3L:21891321-21891441 1.0000 120 chr2L:9986517-9986637 1.0000 120 chr2L:3703368-3703488 1.0000 120 chr3R:4659574-4659694 1.0000 120 chr3R:15371891-15372011 1.0000 120 chr3L:21879499-21879619 1.0000 120 chrX:5737992-5738112 1.0000 120 chr3L:3248846-3248966 1.0000 120 chr2L:19136877-19136997 1.0000 120 chr3R:14283266-14283386 1.0000 120 chr3R:17703297-17703417 1.0000 120 chr2L:490680-490800 1.0000 120 chr3R:23363618-23363738 1.0000 120 chr3L:18822818-18822938 1.0000 120 chrX:19187783-19187903 1.0000 120 chr2L:7425289-7425409 1.0000 120 chr3L:15533459-15533579 1.0000 120 chr2R:12150396-12150516 1.0000 120 chrX:2083245-2083365 1.0000 120 chr3L:3077885-3078005 1.0000 120 chr3L:22822625-22822745 1.0000 120 chr2L:9782381-9782501 1.0000 120 chr3L:14364858-14364978 1.0000 120 chrX:17491293-17491413 1.0000 120 chr2L:15264658-15264778 1.0000 120 chr2R:16336622-16336742 1.0000 120 chr3R:23752786-23752906 1.0000 120 chr3L:3045234-3045354 1.0000 120 chr2R:6501798-6501918 1.0000 120 chr3R:26988602-26988722 1.0000 120 chr2L:4888071-4888191 1.0000 120 chr3L:9429798-9429918 1.0000 120 chr2L:430143-430263 1.0000 120 chr3R:23046626-23046746 1.0000 120 chr2R:22075271-22075391 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Mio/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Mio.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.303 C 0.196 G 0.191 T 0.311 Background letter frequencies (from file dataset with add-one prior applied): A 0.303 C 0.196 G 0.191 T 0.311 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGMGAGMG MEME-1 width = 8 sites = 25 llr = 233 E-value = 1.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGMGAGMG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 7:5:7:5: pos.-specific C ::5:::4: probability G 3a:a3a1a matrix T :::::::: bits 2.4 * * * * 2.2 * * * * 1.9 * * * * 1.7 * * * * Relative 1.4 * * * * Entropy 1.2 * * * * (13.4 bits) 1.0 ****** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGCGAGAG consensus G A G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMGAGMG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:16486468-16486588 42 4.69e-06 AATAAACACG AGCGAGCG AGAAAGCAGC chr3R:24582086-24582206 60 4.69e-06 TGGAAGCTGC AGCGAGCG ACAGGCGCGT chr2R:22311880-22312000 105 1.49e-05 ACTTCAACGG AGCGAGAG ATACAGAT chr3R:21499658-21499778 15 1.49e-05 TGTTTCCACG AGCGAGAG GCAGTCAGGC chr3L:7867494-7867614 93 1.49e-05 GCGGAGAAGC AGCGAGAG AGCCAAGCGG chr2L:5978836-5978956 7 1.79e-05 GATAAA GGCGAGCG ATAGCGAAGG chr3L:18822818-18822938 50 2.51e-05 TGCGAGCGCG AGAGAGCG CAACTGCATG chr3R:21853907-21854027 11 2.51e-05 agagagagag agagagcg aCGACTCTGA chr3R:21856168-21856288 24 2.51e-05 CGCGAGCCAA AGAGAGCG AAAAGAACGC chr3L:22822625-22822745 44 2.97e-05 GCAAATTGAG AGCGGGAG CACGTAACTA chr2R:12586876-12586996 36 3.16e-05 CCGCCAAGGG GGCGGGCG GGTGGTGTGT chr2R:9915203-9915323 108 3.16e-05 TGCAAATATT GGCGGGCG CGTTT chr2L:8290932-8291052 12 4.07e-05 TAGGCCAGGA AGAGGGCG TTAAGCTTTG chr2R:24565529-24565649 64 4.07e-05 ACAATGGACC GGCGAGAG GATGCTCTGC chr2L:1668763-1668883 33 4.07e-05 TGCCAGAGGG AGAGGGCG ATACCATGCT chrX:3672669-3672789 89 5.19e-05 ATAAAGAGAT AGAGAGAG AAAGAGACCA chr2R:13015684-13015804 83 5.19e-05 ctctACCCCA AGAGAGAG CCCGCTCTCC chr2R:18806286-18806406 10 5.19e-05 caGCCCGAA AGAGAGAG GGGACTCTCT chrX:9584639-9584759 86 5.65e-05 CGATGCCGAG GGAGAGCG AGATCGCTGA chr2R:18147964-18148084 38 5.94e-05 AGCGCGCACA GGCGGGAG AACACCCCCG chr2R:7530895-7531015 97 6.65e-05 agtgagtgag agagggag CGCGTTGTTT chr3R:4810055-4810175 110 6.65e-05 TGAAAACGGA AGAGGGAG GGG chrX:21373916-21374036 78 7.64e-05 AAAGAGACAG GGAGAGAG ATGAATAGAA chr2L:430143-430263 52 8.54e-05 TCAGGGGCGT AGCGAGGG TTTGGCACCG chr2L:3346301-3346421 75 8.54e-05 GTATACCCTC AGCGAGGG TACTCAAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMGAGMG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:16486468-16486588 4.7e-06 41_[+1]_71 chr3R:24582086-24582206 4.7e-06 59_[+1]_53 chr2R:22311880-22312000 1.5e-05 104_[+1]_8 chr3R:21499658-21499778 1.5e-05 14_[+1]_98 chr3L:7867494-7867614 1.5e-05 92_[+1]_20 chr2L:5978836-5978956 1.8e-05 6_[+1]_106 chr3L:18822818-18822938 2.5e-05 49_[+1]_63 chr3R:21853907-21854027 2.5e-05 10_[+1]_102 chr3R:21856168-21856288 2.5e-05 23_[+1]_89 chr3L:22822625-22822745 3e-05 43_[+1]_69 chr2R:12586876-12586996 3.2e-05 35_[+1]_77 chr2R:9915203-9915323 3.2e-05 107_[+1]_5 chr2L:8290932-8291052 4.1e-05 11_[+1]_101 chr2R:24565529-24565649 4.1e-05 63_[+1]_49 chr2L:1668763-1668883 4.1e-05 32_[+1]_80 chrX:3672669-3672789 5.2e-05 88_[+1]_24 chr2R:13015684-13015804 5.2e-05 82_[+1]_30 chr2R:18806286-18806406 5.2e-05 9_[+1]_103 chrX:9584639-9584759 5.7e-05 85_[+1]_27 chr2R:18147964-18148084 5.9e-05 37_[+1]_75 chr2R:7530895-7531015 6.6e-05 96_[+1]_16 chr3R:4810055-4810175 6.6e-05 109_[+1]_3 chrX:21373916-21374036 7.6e-05 77_[+1]_35 chr2L:430143-430263 8.5e-05 51_[+1]_61 chr2L:3346301-3346421 8.5e-05 74_[+1]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMGAGMG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGMGAGMG width=8 seqs=25 chr2L:16486468-16486588 ( 42) AGCGAGCG 1 chr3R:24582086-24582206 ( 60) AGCGAGCG 1 chr2R:22311880-22312000 ( 105) AGCGAGAG 1 chr3R:21499658-21499778 ( 15) AGCGAGAG 1 chr3L:7867494-7867614 ( 93) AGCGAGAG 1 chr2L:5978836-5978956 ( 7) GGCGAGCG 1 chr3L:18822818-18822938 ( 50) AGAGAGCG 1 chr3R:21853907-21854027 ( 11) AGAGAGCG 1 chr3R:21856168-21856288 ( 24) AGAGAGCG 1 chr3L:22822625-22822745 ( 44) AGCGGGAG 1 chr2R:12586876-12586996 ( 36) GGCGGGCG 1 chr2R:9915203-9915323 ( 108) GGCGGGCG 1 chr2L:8290932-8291052 ( 12) AGAGGGCG 1 chr2R:24565529-24565649 ( 64) GGCGAGAG 1 chr2L:1668763-1668883 ( 33) AGAGGGCG 1 chrX:3672669-3672789 ( 89) AGAGAGAG 1 chr2R:13015684-13015804 ( 83) AGAGAGAG 1 chr2R:18806286-18806406 ( 10) AGAGAGAG 1 chrX:9584639-9584759 ( 86) GGAGAGCG 1 chr2R:18147964-18148084 ( 38) GGCGGGAG 1 chr2R:7530895-7531015 ( 97) AGAGGGAG 1 chr3R:4810055-4810175 ( 110) AGAGGGAG 1 chrX:21373916-21374036 ( 78) GGAGAGAG 1 chr2L:430143-430263 ( 52) AGCGAGGG 1 chr2L:3346301-3346421 ( 75) AGCGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMGAGMG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0632 E= 1.4e+000 125 -1129 55 -1129 -1129 -1129 239 -1129 67 141 -1129 -1129 -1129 -1129 239 -1129 117 -1129 75 -1129 -1129 -1129 239 -1129 67 117 -125 -1129 -1129 -1129 239 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMGAGMG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.4e+000 0.720000 0.000000 0.280000 0.000000 0.000000 0.000000 1.000000 0.000000 0.480000 0.520000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.680000 0.000000 0.320000 0.000000 0.000000 0.000000 1.000000 0.000000 0.480000 0.440000 0.080000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMGAGMG MEME-1 regular expression -------------------------------------------------------------------------------- [AG]G[CA]G[AG]G[AC]G -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTGTGYG MEME-2 width = 8 sites = 13 llr = 139 E-value = 3.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTGTGYG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :3::::5: probability G a7:a:a:a matrix T ::a:a:5: bits 2.4 * * * * 2.2 * * * * 1.9 * * * * 1.7 * **** * Relative 1.4 ****** * Entropy 1.2 ****** * (15.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTGTGTG consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGTGYG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:18822818-18822938 36 4.82e-06 TGAGTGTGTT GGTGTGCG AGCGCGAGAG chr3R:16099848-16099968 113 4.82e-06 TGACTGCCTC GGTGTGCG chr2R:11203507-11203627 112 4.82e-06 GTCGTTTGTT GGTGTGCG T chr3L:14544199-14544319 61 4.82e-06 GGGCATGATC GGTGTGCG CCTGCTGTTG chr3L:224116-224236 67 1.25e-05 ACGAAGTGAA GGTGTGTG TATACCAAAT chr2L:2200389-2200509 20 1.25e-05 CTTGATTGTC GGTGTGTG AGTGGGGCCA chr2L:8859983-8860103 32 1.25e-05 CTGGCGGGTG GGTGTGTG TTTAAACAGC chr2L:21250795-21250915 101 1.25e-05 GTCTCTAGCG GGTGTGTG TGGAGCTGAC chr2R:12586876-12586996 47 1.25e-05 GCGGGCGGGT GGTGTGTG AGAGCTGCTG chr3R:10134437-10134557 33 1.74e-05 CCGAATTGCC GCTGTGCG AACGGCGTTG chrX:2322005-2322125 82 1.74e-05 TTATTAAGAA GCTGTGCG TGTTTGAAAA chr2L:479118-479238 109 2.53e-05 TGATCGCATG GCTGTGTG CGAG chr2L:1668763-1668883 48 2.53e-05 GCGATACCAT GCTGTGTG CATGCGAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGTGYG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18822818-18822938 4.8e-06 35_[+2]_77 chr3R:16099848-16099968 4.8e-06 112_[+2] chr2R:11203507-11203627 4.8e-06 111_[+2]_1 chr3L:14544199-14544319 4.8e-06 60_[+2]_52 chr3L:224116-224236 1.2e-05 66_[+2]_46 chr2L:2200389-2200509 1.2e-05 19_[+2]_93 chr2L:8859983-8860103 1.2e-05 31_[+2]_81 chr2L:21250795-21250915 1.2e-05 100_[+2]_12 chr2R:12586876-12586996 1.2e-05 46_[+2]_66 chr3R:10134437-10134557 1.7e-05 32_[+2]_80 chrX:2322005-2322125 1.7e-05 81_[+2]_31 chr2L:479118-479238 2.5e-05 108_[+2]_4 chr2L:1668763-1668883 2.5e-05 47_[+2]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGTGYG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTGTGYG width=8 seqs=13 chr3L:18822818-18822938 ( 36) GGTGTGCG 1 chr3R:16099848-16099968 ( 113) GGTGTGCG 1 chr2R:11203507-11203627 ( 112) GGTGTGCG 1 chr3L:14544199-14544319 ( 61) GGTGTGCG 1 chr3L:224116-224236 ( 67) GGTGTGTG 1 chr2L:2200389-2200509 ( 20) GGTGTGTG 1 chr2L:8859983-8860103 ( 32) GGTGTGTG 1 chr2L:21250795-21250915 ( 101) GGTGTGTG 1 chr2R:12586876-12586996 ( 47) GGTGTGTG 1 chr3R:10134437-10134557 ( 33) GCTGTGCG 1 chrX:2322005-2322125 ( 82) GCTGTGCG 1 chr2L:479118-479238 ( 109) GCTGTGTG 1 chr2L:1668763-1668883 ( 48) GCTGTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGTGYG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8403 E= 3.9e+000 -1035 -1035 239 -1035 -1035 65 186 -1035 -1035 -1035 -1035 168 -1035 -1035 239 -1035 -1035 -1035 -1035 168 -1035 -1035 239 -1035 -1035 124 -1035 79 -1035 -1035 239 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGTGYG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 3.9e+000 0.000000 0.000000 1.000000 0.000000 0.000000 0.307692 0.692308 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.461538 0.000000 0.538462 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGTGYG MEME-2 regular expression -------------------------------------------------------------------------------- G[GC]TGTG[TC]G -------------------------------------------------------------------------------- Time 13.71 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGGCAG MEME-3 width = 8 sites = 8 llr = 91 E-value = 3.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGGCAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::3::9: pos.-specific C :aa:1a1: probability G a::89::a matrix T :::::::: bits 2.4 *** * * 2.2 *** * * 1.9 *** ** * 1.7 *** ** * Relative 1.4 ****** * Entropy 1.2 ******** (16.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCGGCAG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGCAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:18822818-18822938 83 3.04e-06 GCGTGTGTGT GCCGGCAG GAAAATAAGA chr3R:21605426-21605546 39 3.04e-06 CAGCACCGAC GCCGGCAG AAGCAGAGCG chr3L:7867494-7867614 8 3.04e-06 TGGTGCA GCCGGCAG AATGTAATCA chr2L:21250795-21250915 52 3.04e-06 TCTTTTGTGT GCCGGCAG CGCATGTGTA chr3R:26988602-26988722 34 5.00e-06 ATTATCATTT GCCGGCCG GCATATACAA chr2R:16336622-16336742 107 9.82e-06 AGCTGACTCC GCCAGCAG CTGTTC chr2L:11053073-11053193 4 9.82e-06 TTT GCCAGCAG CACGGCCAGT chr3R:23210973-23211093 105 1.29e-05 CTTATCAACC GCCGCCAG CTTCGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGCAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18822818-18822938 3e-06 82_[+3]_30 chr3R:21605426-21605546 3e-06 38_[+3]_74 chr3L:7867494-7867614 3e-06 7_[+3]_105 chr2L:21250795-21250915 3e-06 51_[+3]_61 chr3R:26988602-26988722 5e-06 33_[+3]_79 chr2R:16336622-16336742 9.8e-06 106_[+3]_6 chr2L:11053073-11053193 9.8e-06 3_[+3]_109 chr3R:23210973-23211093 1.3e-05 104_[+3]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGCAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGGCAG width=8 seqs=8 chr3L:18822818-18822938 ( 83) GCCGGCAG 1 chr3R:21605426-21605546 ( 39) GCCGGCAG 1 chr3L:7867494-7867614 ( 8) GCCGGCAG 1 chr2L:21250795-21250915 ( 52) GCCGGCAG 1 chr3R:26988602-26988722 ( 34) GCCGGCCG 1 chr2R:16336622-16336742 ( 107) GCCAGCAG 1 chr2L:11053073-11053193 ( 4) GCCAGCAG 1 chr3R:23210973-23211093 ( 105) GCCGCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGCAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 3.2e+002 -965 -965 239 -965 -965 235 -965 -965 -965 235 -965 -965 -28 -965 197 -965 -965 -65 220 -965 -965 235 -965 -965 153 -65 -965 -965 -965 -965 239 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGCAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 3.2e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGCAG MEME-3 regular expression -------------------------------------------------------------------------------- GCC[GA]GCAG -------------------------------------------------------------------------------- Time 19.94 secs. ******************************************************************************** ******************************************************************************** MOTIF BCGCTCBC MEME-4 width = 8 sites = 32 llr = 274 E-value = 4.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif BCGCTCBC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 3a:a:729 probability G 3:7::341 matrix T 5:3:a:3: bits 2.4 * * 2.2 * * 1.9 * * * 1.7 * ** * Relative 1.4 ***** * Entropy 1.2 ***** * (12.3 bits) 1.0 ***** * 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCGCTCGC consensus C T GT sequence G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCGCTCBC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:21891321-21891441 14 8.49e-06 AGTTCTTATC CCGCTCGC TTGCTACACA chr2L:16486468-16486588 94 8.49e-06 GTTTGCGCTC TCGCTCGC CCCCATGGGC chr2L:479118-479238 36 8.49e-06 CTGCGGCCTC TCGCTCGC ACTCACACAT chr2L:2200389-2200509 82 8.49e-06 TCCAATCTTT CCGCTCGC GCTCTTCGCT chr2L:15264658-15264778 53 4.25e-05 CTCCACACAC TCGCTCCC CACCACCACC chrX:5737992-5738112 9 4.25e-05 TCGATGTA TCGCTGGC GTCCTATCGC chrX:13990992-13991112 5 4.25e-05 TCTT TCGCTCCC CTCTTCCTGC chrX:10805750-10805870 1 4.25e-05 . TCGCTCTC CTCCCACTTC chr2R:13015684-13015804 68 4.25e-05 tcactctctc tcgctctc tACCCCAAGA chr2L:5305390-5305510 14 4.25e-05 AAGAGCGAAC CCGCTGGC AAGAGCTACC chrX:18366169-18366289 73 4.25e-05 AGCAGCTATC TCGCTCTC GCTTAAGCTA chr2R:16336622-16336742 15 5.41e-05 GGTGAGAAAA GCGCTGGC GAAAAAAGTG chr3L:21879499-21879619 15 5.41e-05 CCCTGGTATC GCGCTCTC TCTCTCCCGT chr2R:15252473-15252593 64 5.41e-05 AAACAGAGCG GCGCTCTC TCGCACCTTT chr2R:16731317-16731437 4 5.41e-05 CGC GCGCTCTC CCACTCGCAC chr2R:24964204-24964324 8 5.41e-05 CATATTA GCGCTGGC TTGAtttttt chr2L:21250795-21250915 6 5.41e-05 GCTAA GCGCTCTC TCACCATCTC chr3L:3077885-3078005 3 6.79e-05 TC TCTCTCGC TTTCCGCCGC chr2L:11806795-11806915 100 6.79e-05 gtctcgcctc tctctcgc tcctgcctct chr3R:18298310-18298430 64 6.79e-05 CTTCTCACCC CCTCTCGC TCGTTCACTC chr3R:23752786-23752906 34 9.51e-05 CGCTGTGTTA TCGCTGTC ACTATCGATA chr2R:12636541-12636661 109 9.51e-05 GCCGCCACCG TCGCTGCC GCAG chrX:1611895-1612015 100 9.51e-05 cgcaCTgctg ccgctgcc gccgccgtcg chr3R:16991872-16991992 38 1.03e-04 CAGTGGCGTG GCGCTGCC AACCTACTTT chr2R:6628270-6628390 89 1.54e-04 TTCCAAATCG CCTCTCCC CGCAAATCGG chr3L:8702661-8702781 28 1.54e-04 TTTTAATGCC CCTCTCTC TTTTTTTCCT chr2R:6517811-6517931 4 1.54e-04 GCG CCTCTGGC TGCTTCACCC chr2L:21313216-21313336 93 1.54e-04 TCTGTAGCAA TCTCTCTC GACTCATTGC chrX:9584639-9584759 11 1.72e-04 ACGCAAACTT GCTCTCCC ATTTTTCTGG chr3R:4659574-4659694 77 1.81e-04 ACATAATTCC CCGCTCGG ACGTGATTTC chr2L:1986740-1986860 64 1.81e-04 TACACTCTGT TCGCTCGG CACATCCGTT chrX:12574740-12574860 91 2.20e-04 tttcgccttc tctctgtc gtcttattct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCGCTCBC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:21891321-21891441 8.5e-06 13_[+4]_99 chr2L:16486468-16486588 8.5e-06 93_[+4]_19 chr2L:479118-479238 8.5e-06 35_[+4]_77 chr2L:2200389-2200509 8.5e-06 81_[+4]_31 chr2L:15264658-15264778 4.2e-05 52_[+4]_60 chrX:5737992-5738112 4.2e-05 8_[+4]_104 chrX:13990992-13991112 4.2e-05 4_[+4]_108 chrX:10805750-10805870 4.2e-05 [+4]_112 chr2R:13015684-13015804 4.2e-05 67_[+4]_45 chr2L:5305390-5305510 4.2e-05 13_[+4]_99 chrX:18366169-18366289 4.2e-05 72_[+4]_40 chr2R:16336622-16336742 5.4e-05 14_[+4]_98 chr3L:21879499-21879619 5.4e-05 14_[+4]_98 chr2R:15252473-15252593 5.4e-05 63_[+4]_49 chr2R:16731317-16731437 5.4e-05 3_[+4]_109 chr2R:24964204-24964324 5.4e-05 7_[+4]_105 chr2L:21250795-21250915 5.4e-05 5_[+4]_107 chr3L:3077885-3078005 6.8e-05 2_[+4]_110 chr2L:11806795-11806915 6.8e-05 99_[+4]_13 chr3R:18298310-18298430 6.8e-05 63_[+4]_49 chr3R:23752786-23752906 9.5e-05 33_[+4]_79 chr2R:12636541-12636661 9.5e-05 108_[+4]_4 chrX:1611895-1612015 9.5e-05 99_[+4]_13 chr3R:16991872-16991992 0.0001 37_[+4]_75 chr2R:6628270-6628390 0.00015 88_[+4]_24 chr3L:8702661-8702781 0.00015 27_[+4]_85 chr2R:6517811-6517931 0.00015 3_[+4]_109 chr2L:21313216-21313336 0.00015 92_[+4]_20 chrX:9584639-9584759 0.00017 10_[+4]_102 chr3R:4659574-4659694 0.00018 76_[+4]_36 chr2L:1986740-1986860 0.00018 63_[+4]_49 chrX:12574740-12574860 0.00022 90_[+4]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCGCTCBC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BCGCTCBC width=8 seqs=32 chr3L:21891321-21891441 ( 14) CCGCTCGC 1 chr2L:16486468-16486588 ( 94) TCGCTCGC 1 chr2L:479118-479238 ( 36) TCGCTCGC 1 chr2L:2200389-2200509 ( 82) CCGCTCGC 1 chr2L:15264658-15264778 ( 53) TCGCTCCC 1 chrX:5737992-5738112 ( 9) TCGCTGGC 1 chrX:13990992-13991112 ( 5) TCGCTCCC 1 chrX:10805750-10805870 ( 1) TCGCTCTC 1 chr2R:13015684-13015804 ( 68) TCGCTCTC 1 chr2L:5305390-5305510 ( 14) CCGCTGGC 1 chrX:18366169-18366289 ( 73) TCGCTCTC 1 chr2R:16336622-16336742 ( 15) GCGCTGGC 1 chr3L:21879499-21879619 ( 15) GCGCTCTC 1 chr2R:15252473-15252593 ( 64) GCGCTCTC 1 chr2R:16731317-16731437 ( 4) GCGCTCTC 1 chr2R:24964204-24964324 ( 8) GCGCTGGC 1 chr2L:21250795-21250915 ( 6) GCGCTCTC 1 chr3L:3077885-3078005 ( 3) TCTCTCGC 1 chr2L:11806795-11806915 ( 100) TCTCTCGC 1 chr3R:18298310-18298430 ( 64) CCTCTCGC 1 chr3R:23752786-23752906 ( 34) TCGCTGTC 1 chr2R:12636541-12636661 ( 109) TCGCTGCC 1 chrX:1611895-1612015 ( 100) CCGCTGCC 1 chr3R:16991872-16991992 ( 38) GCGCTGCC 1 chr2R:6628270-6628390 ( 89) CCTCTCCC 1 chr3L:8702661-8702781 ( 28) CCTCTCTC 1 chr2R:6517811-6517931 ( 4) CCTCTGGC 1 chr2L:21313216-21313336 ( 93) TCTCTCTC 1 chrX:9584639-9584759 ( 11) GCTCTCCC 1 chr3R:4659574-4659694 ( 77) CCGCTCGG 1 chr2L:1986740-1986860 ( 64) TCGCTCGG 1 chrX:12574740-12574860 ( 91) TCTCTGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCGCTCBC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1072 E= 4.1e+003 -1164 52 39 59 -1164 235 -1164 -1164 -1164 -1164 191 -14 -1164 235 -1164 -1164 -1164 -1164 -1164 169 -1164 181 71 -1164 -1164 16 120 14 -1164 226 -161 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCGCTCBC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 4.1e+003 0.000000 0.281250 0.250000 0.468750 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.718750 0.281250 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.687500 0.312500 0.000000 0.000000 0.218750 0.437500 0.343750 0.000000 0.937500 0.062500 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCGCTCBC MEME-4 regular expression -------------------------------------------------------------------------------- [TCG]C[GT]CT[CG][GTC]C -------------------------------------------------------------------------------- Time 26.15 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGGGGA MEME-5 width = 8 sites = 2 llr = 25 E-value = 2.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGGGGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C a:a::::: probability G :a:aaaa: matrix T :::::::: bits 2.4 ******* 2.2 ******* 1.9 ******* 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCGGGGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGGGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22311880-22312000 32 2.96e-06 CACGACCGTT CGCGGGGA GAGCTTAGCA chr3L:14672771-14672891 43 2.96e-06 TCTTTGGGTG CGCGGGGA GCTTGTGGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGGGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22311880-22312000 3e-06 31_[+5]_81 chr3L:14672771-14672891 3e-06 42_[+5]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGGGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGGGGA width=8 seqs=2 chr2R:22311880-22312000 ( 32) CGCGGGGA 1 chr3L:14672771-14672891 ( 43) CGCGGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGGGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 2.4e+004 -765 235 -765 -765 -765 -765 238 -765 -765 235 -765 -765 -765 -765 238 -765 -765 -765 238 -765 -765 -765 238 -765 -765 -765 238 -765 172 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGGGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.4e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGGGA MEME-5 regular expression -------------------------------------------------------------------------------- CGCGGGGA -------------------------------------------------------------------------------- Time 32.32 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:15262-15382 1.00e+00 120 chrM:4365-4485 9.93e-01 120 chrM:16016-16136 1.00e+00 120 chrM:17265-17385 1.00e+00 120 chrM:19289-19409 1.00e+00 120 chrM:13983-14103 1.00e+00 120 chrM:9771-9891 1.00e+00 120 chrM:6145-6265 1.00e+00 120 chrX:22433028-22433148 9.99e-01 120 chrM:7080-7200 9.22e-01 120 chrM:185-305 1.00e+00 120 chrM:12973-13093 9.99e-01 120 chrM:11345-11465 9.68e-01 120 chrM:13230-13350 7.61e-01 120 chrM:382-502 1.00e+00 120 chr2L:21313216-21313336 4.16e-02 120 chrM:12119-12239 1.00e+00 120 chrM:5414-5534 9.93e-01 120 chrM:14523-14643 1.00e+00 120 chrM:12362-12482 1.00e+00 120 chrM:2785-2905 9.99e-01 120 chrM:7290-7410 1.00e+00 120 chrM:3541-3661 9.90e-01 120 chrM:5215-5335 1.00e+00 120 chrM:1840-1960 5.14e-01 120 chr2L:1668763-1668883 1.51e-04 32_[+1(4.07e-05)]_7_[+2(2.53e-05)]_\ 65 chr3R:9675141-9675261 8.17e-01 120 chrM:10741-10861 9.99e-01 120 chrM:8808-8928 1.00e+00 120 chrM:8608-8728 1.00e+00 120 chrM:14318-14438 9.99e-01 120 chr3R:30103026-30103146 2.59e-02 120 chr3L:7792343-7792463 6.03e-01 120 chr3R:24582086-24582206 5.24e-04 38_[+1(4.69e-06)]_13_[+1(4.69e-06)]_\ 53 chr2R:9915203-9915323 8.23e-03 107_[+1(3.16e-05)]_5 chr3R:29076157-29076277 9.82e-01 120 chr2R:12586876-12586996 4.27e-04 35_[+1(3.16e-05)]_3_[+2(1.25e-05)]_\ 66 chr3R:20765865-20765985 2.78e-01 120 chr2L:21250795-21250915 3.31e-07 5_[+4(5.41e-05)]_38_[+3(3.04e-06)]_\ 41_[+2(1.25e-05)]_12 chr2L:165468-165588 3.28e-02 120 chr2L:5978836-5978956 2.48e-03 6_[+1(1.79e-05)]_106 chr2R:6517811-6517931 1.62e-01 120 chrM:819-939 1.00e+00 120 chr3L:17579309-17579429 2.35e-01 120 chr2R:24964204-24964324 1.12e-02 7_[+4(5.41e-05)]_105 chr2R:7063827-7063947 5.06e-01 120 chr3R:23210973-23211093 1.43e-03 104_[+3(1.29e-05)]_8 chrX:1611895-1612015 4.43e-03 99_[+4(9.51e-05)]_13 chr3L:7867494-7867614 1.73e-04 7_[+3(3.04e-06)]_77_[+1(1.49e-05)]_\ 20 chrX:10728181-10728301 4.87e-01 120 chr3L:13488486-13488606 1.96e-02 120 chr2R:18806286-18806406 3.06e-03 9_[+1(5.19e-05)]_103 chr3L:10739275-10739395 4.30e-01 120 chr3R:5671181-5671301 7.65e-01 120 chr2L:530362-530482 9.31e-01 120 chr3R:19603123-19603243 9.03e-01 120 chr2R:12870142-12870262 7.86e-01 120 chrX:4610567-4610687 1.90e-01 120 chr3L:8702661-8702781 3.76e-01 120 chr3R:18298310-18298430 5.25e-04 32_[+5(9.68e-05)]_23_[+4(6.79e-05)]_\ 49 chrX:7931170-7931290 2.18e-01 120 chr3R:5281275-5281395 2.37e-01 120 chrX:6759556-6759676 2.26e-01 120 chr2R:23818379-23818499 3.05e-01 120 chr2L:8859983-8860103 4.72e-03 31_[+2(1.25e-05)]_81 chr2L:15743772-15743892 5.37e-01 120 chr2L:484749-484869 1.72e-01 120 chr2R:11638456-11638576 2.93e-02 120 chr3L:14672771-14672891 2.91e-06 42_[+5(2.96e-06)]_70 chr2R:18269802-18269922 9.98e-01 120 chr3L:20518658-20518778 2.25e-01 120 chrM:9972-10092 1.00e+00 120 chr2L:2200389-2200509 9.57e-05 19_[+2(1.25e-05)]_54_[+4(8.49e-06)]_\ 31 chr3L:224116-224236 4.64e-03 66_[+2(1.25e-05)]_46 chrX:18366169-18366289 1.77e-02 72_[+4(4.25e-05)]_40 chr3L:3247546-3247666 5.12e-01 120 chr3R:7082085-7082205 6.00e-01 120 chr3R:14361756-14361876 6.73e-02 120 chr3R:21499658-21499778 1.22e-02 14_[+1(1.49e-05)]_98 chrX:3053388-3053508 9.69e-01 120 chr3L:18195148-18195268 9.83e-01 120 chr2L:5292726-5292846 9.42e-01 120 chr3L:14544199-14544319 1.01e-04 60_[+2(4.82e-06)]_52 chr3R:25027670-25027790 8.79e-01 120 chr3R:30276515-30276635 3.86e-01 120 chr3L:16802046-16802166 2.61e-02 27_[+3(1.60e-05)]_85 chr2R:16731317-16731437 1.25e-02 3_[+4(5.41e-05)]_109 chr3L:10660783-10660903 1.12e-02 88_[+5(9.77e-06)]_24 chr3R:4810055-4810175 3.66e-03 109_[+1(6.65e-05)]_3 chr3R:30280514-30280634 8.93e-01 120 chr3R:31698262-31698382 6.40e-01 120 chr3L:2554280-2554400 6.88e-01 120 chrX:17489987-17490107 1.00e+00 120 chr3L:663997-664117 2.71e-01 120 chr2L:13955844-13955964 1.00e+00 120 chr2R:8673393-8673513 9.75e-01 120 chr3L:18011846-18011966 9.88e-01 120 chr3L:3342406-3342526 5.23e-01 120 chr2L:7239484-7239604 2.55e-01 120 chr3L:73848-73968 3.96e-01 120 chr3R:14006856-14006976 5.08e-02 120 chr3R:19282436-19282556 7.76e-02 120 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33_[+4(9.51e-05)]_79 chr3L:3045234-3045354 3.65e-01 120 chr2R:6501798-6501918 1.18e-01 120 chr3R:26988602-26988722 3.94e-02 33_[+3(5.00e-06)]_79 chr2L:4888071-4888191 8.68e-01 120 chr3L:9429798-9429918 4.18e-01 120 chr2L:430143-430263 1.07e-01 51_[+1(8.54e-05)]_61 chr3R:23046626-23046746 5.56e-02 85_[+3(2.62e-05)]_27 chr2R:22075271-22075391 5.62e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************