******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Met.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:6081397-6081517 1.0000 120 chr3R:30271113-30271233 1.0000 120 chrX:8857450-8857570 1.0000 120 chr2R:12014598-12014718 1.0000 120 chr2R:21030462-21030582 1.0000 120 chr2R:18610441-18610561 1.0000 120 chr3R:21827586-21827706 1.0000 120 chr2R:18308317-18308437 1.0000 120 chr2L:7911336-7911456 1.0000 120 chr3R:8968936-8969056 1.0000 120 chr3R:6401626-6401746 1.0000 120 chr3L:8763932-8764052 1.0000 120 chr3R:30689798-30689918 1.0000 120 chr3R:30843889-30844009 1.0000 120 chr3R:31297134-31297254 1.0000 120 chrX:4435358-4435478 1.0000 120 chr3L:10359558-10359678 1.0000 120 chr3R:31295839-31295959 1.0000 120 chr3R:8116099-8116219 1.0000 120 chr2R:10580618-10580738 1.0000 120 chr3L:729480-729600 1.0000 120 chr3R:13931933-13932053 1.0000 120 chr2R:5781955-5782075 1.0000 120 chr3L:1457318-1457438 1.0000 120 chr2R:24541088-24541208 1.0000 120 chr2L:6082402-6082522 1.0000 120 chrX:5026836-5026956 1.0000 120 chr3R:29075824-29075944 1.0000 120 chr3L:8368793-8368913 1.0000 120 chrX:13541335-13541455 1.0000 120 chr2L:15407643-15407763 1.0000 120 chr2L:4180094-4180214 1.0000 120 chrX:20509670-20509790 1.0000 120 chr3L:3074513-3074633 1.0000 120 chr3R:9249542-9249662 1.0000 120 chr2L:11021751-11021871 1.0000 120 chrX:3437626-3437746 1.0000 120 chr2L:15275941-15276061 1.0000 120 chrX:7558756-7558876 1.0000 120 chr3L:5183296-5183416 1.0000 120 chr3R:27593325-27593445 1.0000 120 chr2R:24237457-24237577 1.0000 120 chrX:12239578-12239698 1.0000 120 chr2R:23225197-23225317 1.0000 120 chr3L:14350267-14350387 1.0000 120 chr2L:15463713-15463833 1.0000 120 chr2R:17613804-17613924 1.0000 120 chr3L:6302603-6302723 1.0000 120 chr3R:21648625-21648745 1.0000 120 chrX:3147128-3147248 1.0000 120 chr3L:14453319-14453439 1.0000 120 chrX:6022228-6022348 1.0000 120 chr2R:11069114-11069234 1.0000 120 chr3R:23425241-23425361 1.0000 120 chr2R:15800140-15800260 1.0000 120 chr2R:23014854-23014974 1.0000 120 chrX:17551106-17551226 1.0000 120 chr2R:23031003-23031123 1.0000 120 chr3L:15188914-15189034 1.0000 120 chrX:14750568-14750688 1.0000 120 chr2L:4567319-4567439 1.0000 120 chr2L:700964-701084 1.0000 120 chr3R:26192388-26192508 1.0000 120 chr2L:634261-634381 1.0000 120 chr2L:7573352-7573472 1.0000 120 chr2L:15459058-15459178 1.0000 120 chr2L:16843442-16843562 1.0000 120 chrX:7541530-7541650 1.0000 120 chrX:8800527-8800647 1.0000 120 chrX:13539606-13539726 1.0000 120 chrX:22846513-22846633 1.0000 120 chr2R:19187317-19187437 1.0000 120 chr3R:4961563-4961683 1.0000 120 chr3L:18193772-18193892 1.0000 120 chr3L:6249678-6249798 1.0000 120 chr2L:6086902-6087022 1.0000 120 chr2R:23022654-23022774 1.0000 120 chr3R:4883993-4884113 1.0000 120 chr2L:21879566-21879686 1.0000 120 chrX:6030149-6030269 1.0000 120 chr2L:7619391-7619511 1.0000 120 chr3L:18198930-18199050 1.0000 120 chr3L:15180950-15181070 1.0000 120 chr2R:19934915-19935035 1.0000 120 chr2R:19913812-19913932 1.0000 120 chr2L:651038-651158 1.0000 120 chr2R:23237442-23237562 1.0000 120 chr3R:23504841-23504961 1.0000 120 chr3L:16183254-16183374 1.0000 120 chr3R:29762454-29762574 1.0000 120 chrX:3060165-3060285 1.0000 120 chr2L:7909350-7909470 1.0000 120 chr3L:21060552-21060672 1.0000 120 chr2L:15329524-15329644 1.0000 120 chr3L:761846-761966 1.0000 120 chr3R:22205705-22205825 1.0000 120 chrX:17172238-17172358 1.0000 120 chr3R:8142266-8142386 1.0000 120 chrX:17875329-17875449 1.0000 120 chr3L:19035644-19035764 1.0000 120 chrX:11658580-11658700 1.0000 120 chr3R:31956386-31956506 1.0000 120 chrX:17814926-17815046 1.0000 120 chr3L:1458151-1458271 1.0000 120 chr3L:18241087-18241207 1.0000 120 chr3R:13793451-13793571 1.0000 120 chr3R:15457781-15457901 1.0000 120 chr2L:4648948-4649068 1.0000 120 chr3L:21972444-21972564 1.0000 120 chr3R:11859697-11859817 1.0000 120 chr3L:18137275-18137395 1.0000 120 chr3L:15544547-15544667 1.0000 120 chr3R:31308967-31309087 1.0000 120 chr3L:8370994-8371114 1.0000 120 chr3L:8652786-8652906 1.0000 120 chr3L:12725881-12726001 1.0000 120 chr3L:6471996-6472116 1.0000 120 chr3R:10466409-10466529 1.0000 120 chr2R:24836768-24836888 1.0000 120 chr2L:14247968-14248088 1.0000 120 chr3R:25461817-25461937 1.0000 120 chr2L:5393470-5393590 1.0000 120 chr3L:758723-758843 1.0000 120 chr2L:18805746-18805866 1.0000 120 chr3L:8716195-8716315 1.0000 120 chr2R:16685708-16685828 1.0000 120 chr3L:5637611-5637731 1.0000 120 chr3L:10786071-10786191 1.0000 120 chr2R:10772012-10772132 1.0000 120 chr3R:19064185-19064305 1.0000 120 chr3L:5867090-5867210 1.0000 120 chr3R:9913580-9913700 1.0000 120 chr3R:10476106-10476226 1.0000 120 chr2R:10599144-10599264 1.0000 120 chrX:13568305-13568425 1.0000 120 chrX:17760649-17760769 1.0000 120 chr3R:22424142-22424262 1.0000 120 chrX:2452889-2453009 1.0000 120 chrX:5608635-5608755 1.0000 120 chrX:8255102-8255222 1.0000 120 chrX:17545663-17545783 1.0000 120 chr3L:17964833-17964953 1.0000 120 chrX:21044542-21044662 1.0000 120 chr3L:3612709-3612829 1.0000 120 chr3R:20001655-20001775 1.0000 120 chr3L:6771352-6771472 1.0000 120 chr2L:19142602-19142722 1.0000 120 chr2R:19616013-19616133 1.0000 120 chr3R:17202488-17202608 1.0000 120 chr3L:12090431-12090551 1.0000 120 chr2L:15388427-15388547 1.0000 120 chr2R:18312564-18312684 1.0000 120 chrX:6574625-6574745 1.0000 120 chr2R:22144276-22144396 1.0000 120 chr3R:15588703-15588823 1.0000 120 chr3L:3423072-3423192 1.0000 120 chr3L:15641614-15641734 1.0000 120 chr3R:29538612-29538732 1.0000 120 chr2L:11395819-11395939 1.0000 120 chr2L:3341686-3341806 1.0000 120 chr2L:1409828-1409948 1.0000 120 chr3R:19104269-19104389 1.0000 120 chr3R:8272729-8272849 1.0000 120 chrX:10104609-10104729 1.0000 120 chr3R:22628070-22628190 1.0000 120 chr3L:21594559-21594679 1.0000 120 chr2R:7093019-7093139 1.0000 120 chr2L:4797741-4797861 1.0000 120 chr3R:16336466-16336586 1.0000 120 chr2L:18466307-18466427 1.0000 120 chr3L:14239447-14239567 1.0000 120 chr2R:6144373-6144493 1.0000 120 chr2L:10791425-10791545 1.0000 120 chrX:5026173-5026293 1.0000 120 chr3L:1087424-1087544 1.0000 120 chr2R:20136824-20136944 1.0000 120 chr3L:7113160-7113280 1.0000 120 chr3R:23148485-23148605 1.0000 120 chr3R:8029759-8029879 1.0000 120 chr3L:817859-817979 1.0000 120 chrX:22479475-22479595 1.0000 120 chr2L:3554056-3554176 1.0000 120 chr3R:31505327-31505447 1.0000 120 chr3L:3246893-3247013 1.0000 120 chr2L:11328505-11328625 1.0000 120 chr2L:7043502-7043622 1.0000 120 chr3R:13934787-13934907 1.0000 120 chr3L:6269170-6269290 1.0000 120 chrX:1320502-1320622 1.0000 120 chr3L:3513137-3513257 1.0000 120 chr2R:15842619-15842739 1.0000 120 chr3R:15293706-15293826 1.0000 120 chr3L:1829640-1829760 1.0000 120 chrX:9892966-9893086 1.0000 120 chr2R:18157527-18157647 1.0000 120 chr2L:8855609-8855729 1.0000 120 chr3R:13846003-13846123 1.0000 120 chr2R:19153392-19153512 1.0000 120 chrX:4175956-4176076 1.0000 120 chrX:14897764-14897884 1.0000 120 chr3R:22194815-22194935 1.0000 120 chr3R:29778211-29778331 1.0000 120 chr3R:23496634-23496754 1.0000 120 chr3L:14055354-14055474 1.0000 120 chr3R:10530693-10530813 1.0000 120 chr2R:9674768-9674888 1.0000 120 chr2R:10237825-10237945 1.0000 120 chrX:2455495-2455615 1.0000 120 chr2L:20956934-20957054 1.0000 120 chr3L:11297664-11297784 1.0000 120 chrX:5025431-5025551 1.0000 120 chr3R:15566469-15566589 1.0000 120 chrX:7892554-7892674 1.0000 120 chr2L:382943-383063 1.0000 120 chr3L:1374600-1374720 1.0000 120 chr2L:21847446-21847566 1.0000 120 chr2R:6994735-6994855 1.0000 120 chr3L:9419450-9419570 1.0000 120 chr2R:11183184-11183304 1.0000 120 chr2L:11222206-11222326 1.0000 120 chr3R:30789571-30789691 1.0000 120 chr3L:2838336-2838456 1.0000 120 chr3R:11888338-11888458 1.0000 120 chrX:779501-779621 1.0000 120 chr3L:17506176-17506296 1.0000 120 chr3R:30256373-30256493 1.0000 120 chr3L:1388242-1388362 1.0000 120 chr3L:10794024-10794144 1.0000 120 chr3R:19283667-19283787 1.0000 120 chr2R:17811064-17811184 1.0000 120 chr2L:18628242-18628362 1.0000 120 chr2L:9448022-9448142 1.0000 120 chr2L:7897404-7897524 1.0000 120 chr2R:19849239-19849359 1.0000 120 chr2R:14782990-14783110 1.0000 120 chrX:5044557-5044677 1.0000 120 chr3R:6425895-6426015 1.0000 120 chr3R:19603127-19603247 1.0000 120 chr2L:15304500-15304620 1.0000 120 chr3L:20952235-20952355 1.0000 120 chrX:12000360-12000480 1.0000 120 chr2L:7973949-7974069 1.0000 120 chr3R:27186316-27186436 1.0000 120 chrX:18834518-18834638 1.0000 120 chrX:21074442-21074562 1.0000 120 chr3R:27171217-27171337 1.0000 120 chr3L:13994453-13994573 1.0000 120 chrX:17879370-17879490 1.0000 120 chr2R:6556956-6557076 1.0000 120 chr2R:15745300-15745420 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Met/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Met.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.341 C 0.156 G 0.155 T 0.348 Background letter frequencies (from file dataset with add-one prior applied): A 0.341 C 0.156 G 0.155 T 0.348 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WGGCGGCG MEME-1 width = 8 sites = 12 llr = 128 E-value = 4.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGGCGGCG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3::::::2 pos.-specific C ::18::8: probability G :a9:a838 matrix T 7::3:2:: bits 2.7 * * 2.4 * * 2.2 ** * 1.9 ** **** Relative 1.6 ******* Entropy 1.3 ******* (15.4 bits) 1.1 ******* 0.8 ******* 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGGCGGCG consensus A T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGCGGCG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7911336-7911456 60 7.58e-07 TCGGCGGCAG TGGCGGCG AAGGGGGTCA chrX:6030149-6030269 32 1.50e-06 AAATCGAATA AGGCGGCG CGTCAATGAT chr2L:6082402-6082522 11 1.50e-06 AAAACTGCGA AGGCGGCG AACCACCTTT chr3R:30271113-30271233 106 2.99e-06 ggtgagggag aggCGGGG AGCCGAC chr3R:23148485-23148605 112 4.68e-06 GCCATGATGA TGGTGGCG C chr3R:19064185-19064305 41 4.68e-06 ACAATAAAAA TGGTGGCG GTTGCGGAAA chr2R:18157527-18157647 27 8.81e-06 GGTCAGACAA TGGCGTCG GCAAACGTTC chrX:1320502-1320622 3 8.81e-06 GC TGGCGGCA GCATCTCTTA chr2L:6081397-6081517 46 8.81e-06 GTCCTCTCGA TGGCGTCG AAAATCGTTG chr2R:19913812-19913932 12 1.62e-05 ACAGTGGTTT TGGTGGGG TTCATGTAGG chr3R:23425241-23425361 47 1.62e-05 ACCTGCTGAC AGGCGGCA ATGAGAACTT chr2R:19934915-19935035 13 2.03e-05 GTGGTTCGAT TGCCGGGG CCATTGCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGCGGCG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7911336-7911456 7.6e-07 59_[+1]_53 chrX:6030149-6030269 1.5e-06 31_[+1]_81 chr2L:6082402-6082522 1.5e-06 10_[+1]_102 chr3R:30271113-30271233 3e-06 105_[+1]_7 chr3R:23148485-23148605 4.7e-06 111_[+1]_1 chr3R:19064185-19064305 4.7e-06 40_[+1]_72 chr2R:18157527-18157647 8.8e-06 26_[+1]_86 chrX:1320502-1320622 8.8e-06 2_[+1]_110 chr2L:6081397-6081517 8.8e-06 45_[+1]_67 chr2R:19913812-19913932 1.6e-05 11_[+1]_101 chr3R:23425241-23425361 1.6e-05 46_[+1]_66 chr2R:19934915-19935035 2e-05 12_[+1]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGCGGCG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGGCGGCG width=8 seqs=12 chr2L:7911336-7911456 ( 60) TGGCGGCG 1 chrX:6030149-6030269 ( 32) AGGCGGCG 1 chr2L:6082402-6082522 ( 11) AGGCGGCG 1 chr3R:30271113-30271233 ( 106) AGGCGGGG 1 chr3R:23148485-23148605 ( 112) TGGTGGCG 1 chr3R:19064185-19064305 ( 41) TGGTGGCG 1 chr2R:18157527-18157647 ( 27) TGGCGTCG 1 chrX:1320502-1320622 ( 3) TGGCGGCA 1 chr2L:6081397-6081517 ( 46) TGGCGTCG 1 chr2R:19913812-19913932 ( 12) TGGTGGGG 1 chr3R:23425241-23425361 ( 47) AGGCGGCA 1 chr2R:19934915-19935035 ( 13) TGCCGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGCGGCG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 4.6e+000 -3 -1023 -1023 94 -1023 -1023 269 -1023 -1023 -90 257 -1023 -1023 226 -1023 -48 -1023 -1023 269 -1023 -1023 -1023 243 -106 -1023 226 69 -1023 -103 -1023 243 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGCGGCG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 4.6e+000 0.333333 0.000000 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.750000 0.250000 0.000000 0.166667 0.000000 0.833333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGCGGCG MEME-1 regular expression -------------------------------------------------------------------------------- [TA]GG[CT]GG[CG]G -------------------------------------------------------------------------------- Time 7.40 secs. ******************************************************************************** ******************************************************************************** MOTIF GGWGGGGC MEME-2 width = 8 sites = 8 llr = 88 E-value = 5.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGWGGGGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3:4::::3 pos.-specific C :::::::8 probability G 881aaaa: matrix T :35::::: bits 2.7 **** 2.4 **** 2.2 **** 1.9 **** Relative 1.6 ** ***** Entropy 1.3 ** ***** (15.8 bits) 1.1 ** ***** 0.8 ** ***** 0.5 ** ***** 0.3 ******** 0.0 -------- Multilevel GGTGGGGC consensus ATA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGWGGGGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24836768-24836888 6 1.49e-06 AAGCA GGAGGGGC AGGATTTTTG chrX:7541530-7541650 18 1.83e-06 AAAACTGGAA GGGGGGGC TGGGGAATAG chr2R:22144276-22144396 40 5.13e-06 AACACGAGAC AGTGGGGC AAAGCCATGG chr3R:30271113-30271233 72 5.13e-06 TTTGCTGAag ggtgggga gaggagccag chr3R:23148485-23148605 96 6.82e-06 TCTAAAAATA GTTGGGGC CATGATGATG chr2R:5781955-5782075 37 6.82e-06 aataatagta gttggggc tcgtattTCA chr3L:17964833-17964953 107 1.01e-05 TACGCGAAAG AGAGGGGC ATACTC chrX:4435358-4435478 1 1.01e-05 . GGAGGGGA TCAACGACGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGWGGGGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24836768-24836888 1.5e-06 5_[+2]_107 chrX:7541530-7541650 1.8e-06 17_[+2]_95 chr2R:22144276-22144396 5.1e-06 39_[+2]_73 chr3R:30271113-30271233 5.1e-06 71_[+2]_41 chr3R:23148485-23148605 6.8e-06 95_[+2]_17 chr2R:5781955-5782075 6.8e-06 36_[+2]_76 chr3L:17964833-17964953 1e-05 106_[+2]_6 chrX:4435358-4435478 1e-05 [+2]_112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGWGGGGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGWGGGGC width=8 seqs=8 chr2R:24836768-24836888 ( 6) GGAGGGGC 1 chrX:7541530-7541650 ( 18) GGGGGGGC 1 chr2R:22144276-22144396 ( 40) AGTGGGGC 1 chr3R:30271113-30271233 ( 72) GGTGGGGA 1 chr3R:23148485-23148605 ( 96) GTTGGGGC 1 chr2R:5781955-5782075 ( 37) GTTGGGGC 1 chr3L:17964833-17964953 ( 107) AGAGGGGC 1 chrX:4435358-4435478 ( 1) GGAGGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGWGGGGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.1077 E= 5.6e+003 -45 -965 228 -965 -965 -965 228 -48 14 -965 -31 52 -965 -965 269 -965 -965 -965 269 -965 -965 -965 269 -965 -965 -965 269 -965 -45 226 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGWGGGGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 5.6e+003 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 0.750000 0.250000 0.375000 0.000000 0.125000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.750000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGWGGGGC MEME-2 regular expression -------------------------------------------------------------------------------- [GA][GT][TA]GGGG[CA] -------------------------------------------------------------------------------- Time 13.64 secs. ******************************************************************************** ******************************************************************************** MOTIF YGCTGCMC MEME-3 width = 8 sites = 7 llr = 81 E-value = 7.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGCTGCMC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::6: pos.-specific C 6:9::a4a probability G :a1:a::: matrix T 4::a:::: bits 2.7 * ** * 2.4 * ** * 2.2 ** ** * 1.9 ** ** * Relative 1.6 ***** * Entropy 1.3 ***** * (16.6 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCTGCAC consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTGCMC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:15842619-15842739 1 7.72e-07 . CGCTGCCC ACCGCATTAT chr3L:8652786-8652906 72 7.72e-07 TTTGAAATCT CGCTGCCC AATCTGCGCC chr2L:7911336-7911456 30 2.46e-06 TTGGCACACG CGCTGCAC CTTTAAGTGC chr3R:23148485-23148605 65 4.18e-06 CTCCTCCCCG TGCTGCCC TTGTAAATGT chr3R:27186316-27186436 69 7.95e-06 CTGCAAGTTC TGCTGCAC TCGAAAAATA chrX:6574625-6574745 44 7.95e-06 CGGTTTGCTT TGCTGCAC CAACGATCGA chr2R:23237442-23237562 30 1.04e-05 GGTGCAGTCG CGGTGCAC TGAGAGAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTGCMC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15842619-15842739 7.7e-07 [+3]_112 chr3L:8652786-8652906 7.7e-07 71_[+3]_41 chr2L:7911336-7911456 2.5e-06 29_[+3]_83 chr3R:23148485-23148605 4.2e-06 64_[+3]_48 chr3R:27186316-27186436 8e-06 68_[+3]_44 chrX:6574625-6574745 8e-06 43_[+3]_69 chr2R:23237442-23237562 1e-05 29_[+3]_83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTGCMC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGCTGCMC width=8 seqs=7 chr2R:15842619-15842739 ( 1) CGCTGCCC 1 chr3L:8652786-8652906 ( 72) CGCTGCCC 1 chr2L:7911336-7911456 ( 30) CGCTGCAC 1 chr3R:23148485-23148605 ( 65) TGCTGCCC 1 chr3R:27186316-27186436 ( 69) TGCTGCAC 1 chrX:6574625-6574745 ( 44) TGCTGCAC 1 chr2R:23237442-23237562 ( 30) CGGTGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTGCMC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 7.6e+003 -945 187 -945 30 -945 -945 269 -945 -945 246 -11 -945 -945 -945 -945 152 -945 -945 269 -945 -945 268 -945 -945 74 146 -945 -945 -945 268 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTGCMC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 7.6e+003 0.000000 0.571429 0.000000 0.428571 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.571429 0.428571 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTGCMC MEME-3 regular expression -------------------------------------------------------------------------------- [CT]GCTGC[AC]C -------------------------------------------------------------------------------- Time 19.85 secs. ******************************************************************************** ******************************************************************************** MOTIF AGSCATGG MEME-4 width = 8 sites = 8 llr = 88 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGSCATGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 8:::a::: pos.-specific C ::4a:::: probability G :a6::1aa matrix T 3::::9:: bits 2.7 * * ** 2.4 * * ** 2.2 * * ** 1.9 * * ** Relative 1.6 **** ** Entropy 1.3 **** ** (15.9 bits) 1.1 ******* 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AGGCATGG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSCATGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:18834518-18834638 21 3.64e-06 ATGATACCTG AGGCATGG ATATATGCAT chrX:7892554-7892674 1 3.64e-06 . AGGCATGG TCGTGCAAAT chr2R:6144373-6144493 19 3.64e-06 AATAGCCTTT AGGCATGG ATGCTCCTAC chr2R:12014598-12014718 66 3.64e-06 TATCAGAGAG AGGCATGG AGAAAAAACC chr2R:22144276-22144396 50 7.31e-06 AGTGGGGCAA AGCCATGG GAATAATCCG chr3L:1457318-1457438 67 1.27e-05 ATAAAGTATA TGGCATGG TATTTAGAGA chr2L:16843442-16843562 76 1.80e-05 CTAACCTGAA TGCCATGG GTCCAGAAAC chr3R:30271113-30271233 84 1.80e-05 tggggagagg agccaggg attgggtgag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSCATGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:18834518-18834638 3.6e-06 20_[+4]_92 chrX:7892554-7892674 3.6e-06 [+4]_112 chr2R:6144373-6144493 3.6e-06 18_[+4]_94 chr2R:12014598-12014718 3.6e-06 65_[+4]_47 chr2R:22144276-22144396 7.3e-06 49_[+4]_63 chr3L:1457318-1457438 1.3e-05 66_[+4]_46 chr2L:16843442-16843562 1.8e-05 75_[+4]_37 chr3R:30271113-30271233 1.8e-05 83_[+4]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSCATGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGSCATGG width=8 seqs=8 chrX:18834518-18834638 ( 21) AGGCATGG 1 chrX:7892554-7892674 ( 1) AGGCATGG 1 chr2R:6144373-6144493 ( 19) AGGCATGG 1 chr2R:12014598-12014718 ( 66) AGGCATGG 1 chr2R:22144276-22144396 ( 50) AGCCATGG 1 chr3L:1457318-1457438 ( 67) TGGCATGG 1 chr2L:16843442-16843562 ( 76) TGCCATGG 1 chr3R:30271113-30271233 ( 84) AGCCAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSCATGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 1.2e+004 113 -965 -965 -48 -965 -965 269 -965 -965 126 201 -965 -965 268 -965 -965 155 -965 -965 -965 -965 -965 -31 133 -965 -965 269 -965 -965 -965 269 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSCATGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.2e+004 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.625000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSCATGG MEME-4 regular expression -------------------------------------------------------------------------------- [AT]G[GC]CATGG -------------------------------------------------------------------------------- Time 26.06 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTGGCCA MEME-5 width = 8 sites = 7 llr = 81 E-value = 1.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTGGCCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :1:::::a pos.-specific C a11::aa: probability G :::aa::: matrix T :79::::: bits 2.7 * **** 2.4 * **** 2.2 * **** 1.9 * **** Relative 1.6 * ***** Entropy 1.3 * ***** (16.6 bits) 1.1 * ****** 0.8 * ****** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTTGGCCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTGGCCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:20136824-20136944 92 3.77e-06 GAACCATTAT CTTGGCCA AAGTGCAGTG chr3R:29762454-29762574 93 3.77e-06 ATGGGCTGAG CTTGGCCA ATCCTATAGT chr2L:7619391-7619511 9 3.77e-06 CTATAAGT CTTGGCCA ACAATCACGA chr2R:23022654-23022774 102 3.77e-06 TGACCATCGT CTTGGCCA TAATGCCATA chrX:2455495-2455615 85 5.46e-06 CAATTTGAAG CCTGGCCA TTATGTGACT chrX:1320502-1320622 26 7.14e-06 TCTTATTGGA CTCGGCCA CAAGGATTCT chr3R:20001655-20001775 105 1.08e-05 ggtgggtaaa catggcca aaaagtgg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTGGCCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:20136824-20136944 3.8e-06 91_[+5]_21 chr3R:29762454-29762574 3.8e-06 92_[+5]_20 chr2L:7619391-7619511 3.8e-06 8_[+5]_104 chr2R:23022654-23022774 3.8e-06 101_[+5]_11 chrX:2455495-2455615 5.5e-06 84_[+5]_28 chrX:1320502-1320622 7.1e-06 25_[+5]_87 chr3R:20001655-20001775 1.1e-05 104_[+5]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTGGCCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTGGCCA width=8 seqs=7 chr2R:20136824-20136944 ( 92) CTTGGCCA 1 chr3R:29762454-29762574 ( 93) CTTGGCCA 1 chr2L:7619391-7619511 ( 9) CTTGGCCA 1 chr2R:23022654-23022774 ( 102) CTTGGCCA 1 chrX:2455495-2455615 ( 85) CCTGGCCA 1 chrX:1320502-1320622 ( 26) CTCGGCCA 1 chr3R:20001655-20001775 ( 105) CATGGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTGGCCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9574 E= 1.3e+004 -945 268 -945 -945 -125 -13 -945 104 -945 -13 -945 130 -945 -945 269 -945 -945 -945 269 -945 -945 268 -945 -945 -945 268 -945 -945 155 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTGGCCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.3e+004 0.000000 1.000000 0.000000 0.000000 0.142857 0.142857 0.000000 0.714286 0.000000 0.142857 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTGGCCA MEME-5 regular expression -------------------------------------------------------------------------------- CTTGGCCA -------------------------------------------------------------------------------- Time 32.25 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6081397-6081517 7.77e-05 27_[+3(6.72e-05)]_10_[+1(8.81e-06)]_\ 5_[+3(6.72e-05)]_21_[+3(2.22e-05)]_25 chr3R:30271113-30271233 3.83e-07 71_[+2(5.13e-06)]_4_[+4(1.80e-05)]_\ 14_[+1(2.99e-06)]_7 chrX:8857450-8857570 3.57e-01 120 chr2R:12014598-12014718 4.87e-06 65_[+4(3.64e-06)]_47 chr2R:21030462-21030582 7.09e-01 120 chr2R:18610441-18610561 8.95e-01 120 chr3R:21827586-21827706 8.04e-01 120 chr2R:18308317-18308437 8.27e-01 120 chr2L:7911336-7911456 4.36e-08 29_[+3(2.46e-06)]_22_[+1(7.58e-07)]_\ 53 chr3R:8968936-8969056 7.98e-01 120 chr3R:6401626-6401746 1.80e-01 120 chr3L:8763932-8764052 8.29e-01 120 chr3R:30689798-30689918 9.56e-01 120 chr3R:30843889-30844009 2.05e-01 120 chr3R:31297134-31297254 8.85e-01 120 chrX:4435358-4435478 1.85e-02 [+2(1.01e-05)]_112 chr3L:10359558-10359678 8.46e-01 120 chr3R:31295839-31295959 7.68e-01 120 chr3R:8116099-8116219 3.67e-02 120 chr2R:10580618-10580738 2.81e-01 120 chr3L:729480-729600 8.76e-01 120 chr3R:13931933-13932053 9.82e-01 120 chr2R:5781955-5782075 8.84e-05 36_[+2(6.82e-06)]_76 chr3L:1457318-1457438 1.37e-02 66_[+4(1.27e-05)]_46 chr2R:24541088-24541208 5.84e-01 120 chr2L:6082402-6082522 5.99e-04 10_[+1(1.50e-06)]_102 chrX:5026836-5026956 1.00e+00 120 chr3R:29075824-29075944 1.42e-01 120 chr3L:8368793-8368913 1.28e-01 120 chrX:13541335-13541455 1.47e-01 120 chr2L:15407643-15407763 2.95e-01 120 chr2L:4180094-4180214 3.47e-01 120 chrX:20509670-20509790 8.97e-01 120 chr3L:3074513-3074633 2.59e-01 120 chr3R:9249542-9249662 5.52e-01 120 chr2L:11021751-11021871 6.65e-01 120 chrX:3437626-3437746 2.19e-01 120 chr2L:15275941-15276061 9.78e-01 120 chrX:7558756-7558876 5.41e-01 120 chr3L:5183296-5183416 9.89e-01 120 chr3R:27593325-27593445 4.13e-01 120 chr2R:24237457-24237577 3.80e-01 120 chrX:12239578-12239698 8.13e-01 120 chr2R:23225197-23225317 2.06e-01 120 chr3L:14350267-14350387 6.20e-01 120 chr2L:15463713-15463833 5.70e-01 120 chr2R:17613804-17613924 4.73e-01 120 chr3L:6302603-6302723 9.58e-01 120 chr3R:21648625-21648745 2.20e-01 120 chrX:3147128-3147248 3.83e-01 120 chr3L:14453319-14453439 7.85e-01 120 chrX:6022228-6022348 4.47e-01 120 chr2R:11069114-11069234 7.90e-01 120 chr3R:23425241-23425361 8.08e-04 46_[+1(1.62e-05)]_21_[+3(5.10e-05)]_\ 37 chr2R:15800140-15800260 1.83e-01 120 chr2R:23014854-23014974 2.72e-01 120 chrX:17551106-17551226 8.79e-01 120 chr2R:23031003-23031123 3.65e-03 120 chr3L:15188914-15189034 1.21e-01 120 chrX:14750568-14750688 4.67e-01 120 chr2L:4567319-4567439 9.34e-01 120 chr2L:700964-701084 3.87e-01 120 chr3R:26192388-26192508 6.38e-01 120 chr2L:634261-634381 2.68e-01 120 chr2L:7573352-7573472 9.98e-01 120 chr2L:15459058-15459178 4.92e-01 120 chr2L:16843442-16843562 2.58e-02 75_[+4(1.80e-05)]_37 chrX:7541530-7541650 5.37e-04 17_[+2(1.83e-06)]_95 chrX:8800527-8800647 4.65e-01 120 chrX:13539606-13539726 8.83e-01 120 chrX:22846513-22846633 2.27e-01 120 chr2R:19187317-19187437 6.64e-01 120 chr3R:4961563-4961683 4.52e-01 120 chr3L:18193772-18193892 9.92e-01 120 chr3L:6249678-6249798 9.60e-01 120 chr2L:6086902-6087022 6.39e-03 82_[+3(1.98e-05)]_30 chr2R:23022654-23022774 1.46e-02 101_[+5(3.77e-06)]_11 chr3R:4883993-4884113 2.61e-01 120 chr2L:21879566-21879686 9.62e-01 120 chrX:6030149-6030269 6.19e-05 31_[+1(1.50e-06)]_81 chr2L:7619391-7619511 5.16e-06 8_[+5(3.77e-06)]_62_[+1(6.75e-05)]_\ 34 chr3L:18198930-18199050 4.09e-01 120 chr3L:15180950-15181070 8.08e-01 120 chr2R:19934915-19935035 5.17e-04 12_[+1(2.03e-05)]_100 chr2R:19913812-19913932 6.76e-03 11_[+1(1.62e-05)]_101 chr2L:651038-651158 3.13e-01 23_[+3(6.72e-05)]_89 chr2R:23237442-23237562 4.94e-04 29_[+3(1.04e-05)]_83 chr3R:23504841-23504961 8.29e-01 120 chr3L:16183254-16183374 5.80e-01 120 chr3R:29762454-29762574 8.58e-03 92_[+5(3.77e-06)]_20 chrX:3060165-3060285 2.13e-01 120 chr2L:7909350-7909470 9.75e-01 120 chr3L:21060552-21060672 1.15e-01 120 chr2L:15329524-15329644 5.07e-01 120 chr3L:761846-761966 7.43e-01 120 chr3R:22205705-22205825 9.63e-01 120 chrX:17172238-17172358 8.71e-02 120 chr3R:8142266-8142386 9.39e-01 120 chrX:17875329-17875449 4.06e-02 120 chr3L:19035644-19035764 5.90e-01 120 chrX:11658580-11658700 1.53e-02 6_[+2(1.76e-05)]_106 chr3R:31956386-31956506 6.24e-01 120 chrX:17814926-17815046 9.14e-01 120 chr3L:1458151-1458271 7.93e-01 120 chr3L:18241087-18241207 8.32e-01 120 chr3R:13793451-13793571 1.00e+00 120 chr3R:15457781-15457901 2.71e-01 120 chr2L:4648948-4649068 5.65e-01 120 chr3L:21972444-21972564 1.84e-01 120 chr3R:11859697-11859817 8.56e-01 120 chr3L:18137275-18137395 8.77e-01 120 chr3L:15544547-15544667 1.63e-01 120 chr3R:31308967-31309087 1.78e-02 120 chr3L:8370994-8371114 7.33e-02 120 chr3L:8652786-8652906 1.99e-04 71_[+3(7.72e-07)]_41 chr3L:12725881-12726001 9.81e-01 120 chr3L:6471996-6472116 6.25e-01 120 chr3R:10466409-10466529 3.46e-01 120 chr2R:24836768-24836888 1.73e-03 5_[+2(1.49e-06)]_107 chr2L:14247968-14248088 5.42e-01 120 chr3R:25461817-25461937 8.91e-01 120 chr2L:5393470-5393590 9.94e-01 120 chr3L:758723-758843 3.60e-01 120 chr2L:18805746-18805866 9.61e-01 120 chr3L:8716195-8716315 9.73e-01 120 chr2R:16685708-16685828 1.00e-02 120 chr3L:5637611-5637731 5.39e-01 120 chr3L:10786071-10786191 8.97e-01 120 chr2R:10772012-10772132 4.71e-01 120 chr3R:19064185-19064305 3.66e-04 40_[+1(4.68e-06)]_72 chr3L:5867090-5867210 5.53e-01 120 chr3R:9913580-9913700 4.90e-01 120 chr3R:10476106-10476226 1.00e+00 120 chr2R:10599144-10599264 8.35e-01 120 chrX:13568305-13568425 6.64e-01 120 chrX:17760649-17760769 7.08e-04 2_[+3(3.42e-05)]_110 chr3R:22424142-22424262 9.73e-01 120 chrX:2452889-2453009 3.53e-03 120 chrX:5608635-5608755 7.52e-01 120 chrX:8255102-8255222 6.91e-01 120 chrX:17545663-17545783 9.54e-01 120 chr3L:17964833-17964953 1.12e-03 106_[+2(1.01e-05)]_6 chrX:21044542-21044662 9.30e-01 120 chr3L:3612709-3612829 9.80e-01 120 chr3R:20001655-20001775 4.14e-04 104_[+5(1.08e-05)]_8 chr3L:6771352-6771472 5.22e-01 120 chr2L:19142602-19142722 8.81e-01 120 chr2R:19616013-19616133 4.40e-02 120 chr3R:17202488-17202608 9.19e-01 120 chr3L:12090431-12090551 1.35e-02 120 chr2L:15388427-15388547 9.80e-01 120 chr2R:18312564-18312684 8.48e-01 120 chrX:6574625-6574745 3.77e-02 43_[+3(7.95e-06)]_69 chr2R:22144276-22144396 1.47e-05 39_[+2(5.13e-06)]_2_[+4(7.31e-06)]_\ 63 chr3R:15588703-15588823 1.00e+00 120 chr3L:3423072-3423192 6.57e-01 120 chr3L:15641614-15641734 1.76e-02 120 chr3R:29538612-29538732 3.12e-01 120 chr2L:11395819-11395939 9.61e-01 120 chr2L:3341686-3341806 8.53e-01 120 chr2L:1409828-1409948 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chr3R:19603127-19603247 4.85e-01 120 chr2L:15304500-15304620 1.00e+00 120 chr3L:20952235-20952355 3.50e-01 120 chrX:12000360-12000480 3.91e-01 120 chr2L:7973949-7974069 7.74e-01 120 chr3R:27186316-27186436 8.00e-03 68_[+3(7.95e-06)]_44 chrX:18834518-18834638 6.96e-03 20_[+4(3.64e-06)]_92 chrX:21074442-21074562 9.37e-01 120 chr3R:27171217-27171337 9.13e-01 120 chr3L:13994453-13994573 1.36e-01 120 chrX:17879370-17879490 6.81e-01 120 chr2R:6556956-6557076 9.47e-01 120 chr2R:15745300-15745420 1.34e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************