******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Mes4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:20641421-20641541 1.0000 120 chr3R:21822632-21822752 1.0000 120 chr2L:7810419-7810539 1.0000 120 chrX:12249023-12249143 1.0000 120 chr3L:8544100-8544220 1.0000 120 chr3R:13320007-13320127 1.0000 120 chrX:4322750-4322870 1.0000 120 chr2R:22911828-22911948 1.0000 120 chr3R:7108202-7108322 1.0000 120 chr3L:8440878-8440998 1.0000 120 chr3L:2591012-2591132 1.0000 120 chr3R:23303441-23303561 1.0000 120 chr3R:11372779-11372899 1.0000 120 chrX:3073705-3073825 1.0000 120 chrX:8671442-8671562 1.0000 120 chr3R:26867442-26867562 1.0000 120 chr2R:21909983-21910103 1.0000 120 chr3R:12644948-12645068 1.0000 120 chrX:6279211-6279331 1.0000 120 chr2R:22401904-22402024 1.0000 120 chr2R:12729303-12729423 1.0000 120 chr4:181043-181163 1.0000 120 chr3L:7961341-7961461 1.0000 120 chr3R:23803813-23803933 1.0000 120 chr2L:10615170-10615290 1.0000 120 chrX:5564064-5564184 1.0000 120 chr2R:22407040-22407160 1.0000 120 chr2R:14488412-14488532 1.0000 120 chr2L:13296276-13296396 1.0000 120 chr2L:2967106-2967226 1.0000 120 chr3R:25662325-25662445 1.0000 120 chrX:618629-618749 1.0000 120 chr2R:12274358-12274478 1.0000 120 chr3L:20664091-20664211 1.0000 120 chr3L:22871055-22871175 1.0000 120 chr2R:16091943-16092063 1.0000 120 chr2R:22402970-22403090 1.0000 120 chr2R:17477271-17477391 1.0000 120 chr3R:27826326-27826446 1.0000 120 chr2L:20647464-20647584 1.0000 120 chr2L:7149024-7149144 1.0000 120 chr3L:17981220-17981340 1.0000 120 chr3L:9511325-9511445 1.0000 120 chr3R:6764968-6765088 1.0000 120 chr3R:6973336-6973456 1.0000 120 chr3R:6647071-6647191 1.0000 120 chr3L:3080776-3080896 1.0000 120 chr3R:13448508-13448628 1.0000 120 chr2L:1427906-1428026 1.0000 120 chr3R:5300772-5300892 1.0000 120 chr3L:7859873-7859993 1.0000 120 chr2L:7528206-7528326 1.0000 120 chr2R:10568424-10568544 1.0000 120 chr3R:16441669-16441789 1.0000 120 chrX:13820757-13820877 1.0000 120 chr2L:6462443-6462563 1.0000 120 chr3L:3875175-3875295 1.0000 120 chr3R:31709404-31709524 1.0000 120 chrX:2166236-2166356 1.0000 120 chr2R:21514508-21514628 1.0000 120 chr2R:9870601-9870721 1.0000 120 chr3R:31549264-31549384 1.0000 120 chr2R:9543678-9543798 1.0000 120 chrX:19839244-19839364 1.0000 120 chr2R:16150421-16150541 1.0000 120 chr2R:21527392-21527512 1.0000 120 chr3L:16023414-16023534 1.0000 120 chr2L:18505621-18505741 1.0000 120 chr2L:2494670-2494790 1.0000 120 chr3R:10203711-10203831 1.0000 120 chrX:6937557-6937677 1.0000 120 chr2L:8543342-8543462 1.0000 120 chr2L:3888358-3888478 1.0000 120 chrX:11493078-11493198 1.0000 120 chr2R:25190596-25190716 1.0000 120 chrX:13805686-13805806 1.0000 120 chr3R:16769553-16769673 1.0000 120 chr3R:20833840-20833960 1.0000 120 chr2R:19310935-19311055 1.0000 120 chr3R:29251581-29251701 1.0000 120 chr2R:6707757-6707877 1.0000 120 chr2L:4292678-4292798 1.0000 120 chr2R:20590634-20590754 1.0000 120 chr2R:9553983-9554103 1.0000 120 chr3R:21377252-21377372 1.0000 120 chr2L:5303770-5303890 1.0000 120 chrX:10786776-10786896 1.0000 120 chr2R:9414492-9414612 1.0000 120 chrX:4458032-4458152 1.0000 120 chr2R:10238131-10238251 1.0000 120 chr2R:18846600-18846720 1.0000 120 chr2R:18583386-18583506 1.0000 120 chrX:10115672-10115792 1.0000 120 chr3R:19648674-19648794 1.0000 120 chr3L:4690809-4690929 1.0000 120 chr3R:10567023-10567143 1.0000 120 chr2L:3100907-3101027 1.0000 120 chr2R:8242589-8242709 1.0000 120 chrX:3357713-3357833 1.0000 120 chrX:18837171-18837291 1.0000 120 chr2R:16610065-16610185 1.0000 120 chr2L:2749240-2749360 1.0000 120 chrX:3538883-3539003 1.0000 120 chr3R:4805015-4805135 1.0000 120 chr2R:22540014-22540134 1.0000 120 chr2R:9548249-9548369 1.0000 120 chr2R:13337280-13337400 1.0000 120 chr3R:26859384-26859504 1.0000 120 chr3L:9762238-9762358 1.0000 120 chrX:17294297-17294417 1.0000 120 chr3L:8925786-8925906 1.0000 120 chr2L:8423903-8424023 1.0000 120 chr3L:11334132-11334252 1.0000 120 chrX:6090988-6091108 1.0000 120 chr3R:26056543-26056663 1.0000 120 chrX:11154032-11154152 1.0000 120 chr3R:30765755-30765875 1.0000 120 chr2R:11469709-11469829 1.0000 120 chr2L:7154999-7155119 1.0000 120 chr2R:17535702-17535822 1.0000 120 chr2L:8080783-8080903 1.0000 120 chr3R:13875101-13875221 1.0000 120 chr3L:15729540-15729660 1.0000 120 chrX:4609860-4609980 1.0000 120 chrX:17830217-17830337 1.0000 120 chr2L:22129966-22130086 1.0000 120 chr3R:6818731-6818851 1.0000 120 chr2L:13838773-13838893 1.0000 120 chr3L:12391386-12391506 1.0000 120 chr2R:6607574-6607694 1.0000 120 chr2R:22641301-22641421 1.0000 120 chr3L:11429748-11429868 1.0000 120 chr3R:31689849-31689969 1.0000 120 chrX:11660586-11660706 1.0000 120 chr2R:6574856-6574976 1.0000 120 chr3R:5086747-5086867 1.0000 120 chr2L:19817262-19817382 1.0000 120 chr2R:21160534-21160654 1.0000 120 chr3L:8525419-8525539 1.0000 120 chrX:1370169-1370289 1.0000 120 chr2L:16520044-16520164 1.0000 120 chr3L:1302713-1302833 1.0000 120 chrX:18517483-18517603 1.0000 120 chr3L:4353934-4354054 1.0000 120 chr2R:15835512-15835632 1.0000 120 chrX:15498962-15499082 1.0000 120 chr2L:3601018-3601138 1.0000 120 chrX:17887366-17887486 1.0000 120 chr3R:9039548-9039668 1.0000 120 chr2R:14432265-14432385 1.0000 120 chr3R:16069404-16069524 1.0000 120 chr2L:7617009-7617129 1.0000 120 chr2R:22312719-22312839 1.0000 120 chr3R:21850217-21850337 1.0000 120 chrX:15063830-15063950 1.0000 120 chrX:8436845-8436965 1.0000 120 chr3R:23300804-23300924 1.0000 120 chrX:6663274-6663394 1.0000 120 chr3L:14172651-14172771 1.0000 120 chr3R:5060424-5060544 1.0000 120 chr3R:16847388-16847508 1.0000 120 chrX:17176687-17176807 1.0000 120 chr3R:17655148-17655268 1.0000 120 chr3L:13022555-13022675 1.0000 120 chr3R:19094146-19094266 1.0000 120 chr2R:10196389-10196509 1.0000 120 chr2L:16318192-16318312 1.0000 120 chr2L:11331802-11331922 1.0000 120 chr3R:21865239-21865359 1.0000 120 chr2L:8554491-8554611 1.0000 120 chrX:19371681-19371801 1.0000 120 chr2R:9712385-9712505 1.0000 120 chr2L:7635319-7635439 1.0000 120 chr3R:16025912-16026032 1.0000 120 chr3R:8171622-8171742 1.0000 120 chr3R:29265285-29265405 1.0000 120 chr3L:6059215-6059335 1.0000 120 chr3R:4775471-4775591 1.0000 120 chr2R:17683496-17683616 1.0000 120 chr2L:5981607-5981727 1.0000 120 chr2R:24669280-24669400 1.0000 120 chr3R:25885276-25885396 1.0000 120 chr3R:9345020-9345140 1.0000 120 chr2R:16271944-16272064 1.0000 120 chr2R:20126353-20126473 1.0000 120 chr2L:7306974-7307094 1.0000 120 chr2R:24086537-24086657 1.0000 120 chr2L:838195-838315 1.0000 120 chr2R:18609037-18609157 1.0000 120 chrX:10582188-10582308 1.0000 120 chr3R:29223380-29223500 1.0000 120 chr3R:28845319-28845439 1.0000 120 chr2L:14376917-14377037 1.0000 120 chrX:16319326-16319446 1.0000 120 chr2R:12025140-12025260 1.0000 120 chrX:16441334-16441454 1.0000 120 chr3R:27138078-27138198 1.0000 120 chr3R:23733091-23733211 1.0000 120 chr3R:30022664-30022784 1.0000 120 chrX:16683915-16684035 1.0000 120 chr3R:11735470-11735590 1.0000 120 chr2R:21060551-21060671 1.0000 120 chr3R:6760942-6761062 1.0000 120 chr2L:7828276-7828396 1.0000 120 chrX:19643318-19643438 1.0000 120 chr3R:23387058-23387178 1.0000 120 chr3L:3305551-3305671 1.0000 120 chr2R:6636348-6636468 1.0000 120 chr3L:11540383-11540503 1.0000 120 chr3R:28857463-28857583 1.0000 120 chr4:1031805-1031925 1.0000 120 chr2L:6179121-6179241 1.0000 120 chr2L:21102538-21102658 1.0000 120 chr3L:772346-772466 1.0000 120 chrX:20507869-20507989 1.0000 120 chr2L:7043185-7043305 1.0000 120 chr3R:9874690-9874810 1.0000 120 chr2L:901531-901651 1.0000 120 chr3R:26230188-26230308 1.0000 120 chr3L:5926138-5926258 1.0000 120 chr3R:16264053-16264173 1.0000 120 chr3R:20276184-20276304 1.0000 120 chr2R:25011246-25011366 1.0000 120 chr2R:22387657-22387777 1.0000 120 chr2R:14008441-14008561 1.0000 120 chr3R:26436681-26436801 1.0000 120 chr3L:12037838-12037958 1.0000 120 chr2L:19377508-19377628 1.0000 120 chr2L:6339647-6339767 1.0000 120 chr2R:11541171-11541291 1.0000 120 chrX:6615600-6615720 1.0000 120 chr3R:18242694-18242814 1.0000 120 chr3R:13064102-13064222 1.0000 120 chr2R:9116327-9116447 1.0000 120 chr3L:27267316-27267436 1.0000 120 chr2L:9570932-9571052 1.0000 120 chr3L:5987727-5987847 1.0000 120 chrX:20631296-20631416 1.0000 120 chr3R:31687900-31688020 1.0000 120 chr3R:18663663-18663783 1.0000 120 chr2L:7049027-7049147 1.0000 120 chr3L:16582812-16582932 1.0000 120 chr2R:10819836-10819956 1.0000 120 chr3R:15983759-15983879 1.0000 120 chr3L:3787933-3788053 1.0000 120 chr3R:8563954-8564074 1.0000 120 chr3L:5152565-5152685 1.0000 120 chrX:3068442-3068562 1.0000 120 chr2L:6956893-6957013 1.0000 120 chr3L:16769988-16770108 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Mes4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Mes4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.296 C 0.211 G 0.202 T 0.291 Background letter frequencies (from file dataset with add-one prior applied): A 0.296 C 0.211 G 0.202 T 0.291 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCAMACAV MEME-1 width = 8 sites = 46 llr = 380 E-value = 1.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAMACAV MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:a58:a4 pos.-specific C :a:5:a:4 probability G 7:::2::2 matrix T :::::::: bits 2.3 * * 2.1 * * 1.8 ** ** 1.6 ** ** Relative 1.4 ** ** Entropy 1.2 *** *** (11.9 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCACACAC consensus A AG A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAMACAV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:13064102-13064222 48 1.04e-05 TGCCAGACAG Gcacacac aatacaaaca chr2L:7306974-7307094 59 1.04e-05 CACCCCACTC GCACACAC ACACCATCGG chr2R:10238131-10238251 97 1.04e-05 atgcccactc gcacacac acTCGCGCTG chr2R:22401904-22402024 37 1.04e-05 CCATCAACTT GCACACAC AAGACGAATT chr3R:23303441-23303561 47 1.04e-05 TTCTCTCTGT GCACACAC CCTTatatcc chr2R:9553983-9554103 91 2.50e-05 ATAATCAAAC GCACACAA ACTTTTTGTA chr2L:7528206-7528326 101 2.50e-05 CAACTTAAAA GCACACAA ACTACACACA chr3L:7961341-7961461 25 2.50e-05 TTACAATTAT GCACACAA ACAAGCCAAG chrX:19643318-19643438 65 3.95e-05 GCTGTCATCG GCAAACAC ATACGAATAA chr2L:13838773-13838893 47 3.95e-05 CGGTGTTTAT GCAAACAC AAAGGCGTGT chr2L:2494670-2494790 45 3.95e-05 GCGCCCTTGT GCAAACAC ACGGAAAACC chr3R:6764968-6765088 100 3.95e-05 GTCGGCTTGT GCAAACAC ACATTAATAT chr3L:3305551-3305671 45 4.95e-05 ACAAATTAAA GCACACAG AACAGCTCGT chr3R:23300804-23300924 108 4.95e-05 GTGAGCCTAC GCACACAG ATGCA chrX:6937557-6937677 58 4.95e-05 tcacacacac gcacacaG GTGAAAAAGA chr2R:11541171-11541291 113 7.70e-05 TTGCAAACTG GCAAACAA chr2R:18609037-18609157 74 7.70e-05 TGTTGAAGAG GCAAACAA ACACGGTGAC chr3R:25885276-25885396 48 7.70e-05 GATAAGGTCG GCAAACAA AATACTTATC chr2R:14432265-14432385 52 7.70e-05 CCTTCGCGTT GCACGCAC AAATTTCGAA chr3L:4690809-4690929 110 7.70e-05 CCATAAGTAC GCAAACAA AAT chr2R:9414492-9414612 41 7.70e-05 CAAAACGAAT GCAAACAA ACAGCCATAA chr2R:16150421-16150541 64 7.70e-05 GAGAGAGGCA GCAAACAA AGTAGCAACA chr3L:7859873-7859993 40 7.70e-05 AACGTGAAAT GCAAACAA AAAGCTGGAA chr2L:1427906-1428026 19 7.70e-05 CGAAAGTGGC GCAAACAA TGTCTATAAC chr2R:20126353-20126473 91 9.09e-05 GTGCGACAAA GCAAACAG CTGCACTGAG chr2L:5303770-5303890 16 9.09e-05 GCACACCACA GCAAACAG AGTGGAGTGT chr3R:31549264-31549384 76 9.09e-05 AGACACGAGA GCAAACAG TTAAGGTATG chr2L:21102538-21102658 34 1.01e-04 TAAAAAGAAC GCACGCAA TATTTTCGAA chrX:15498962-15499082 35 1.01e-04 CCGGCGCACT GCACGCAA CAATCACTCG chrX:16319326-16319446 82 1.11e-04 ATGTACATAT GCAAGCAC GACAAGAACA chr2R:9116327-9116447 24 1.33e-04 CAGACGGCTC GCACGCAG GCGGAAAATG chrX:6615600-6615720 91 1.33e-04 TAAATTTCCA ACACACAC ACATATGCTC chr2R:11469709-11469829 39 1.33e-04 AACAACAGCT ACACACAC GGCAACTGAT chr3R:30765755-30765875 2 1.33e-04 C ACACACAC AAACAGCGCC chr2L:2967106-2967226 80 1.33e-04 cacagatcac acacacac cccacacaga chr3R:7108202-7108322 54 1.33e-04 GGTGTCAAAA ACACACAC GCTCGATATC chr3R:18242694-18242814 68 1.47e-04 ACCACAGGCA GCAAGCAA AATCGACGCC chr3L:772346-772466 61 1.47e-04 ATATATTTCA GCAAGCAA CATTTTTCCA chr3R:5060424-5060544 55 1.68e-04 AGGACAGATA ACACACAA ATCTTTTTCT chrX:3357713-3357833 57 1.68e-04 ATTTCTGTTT ACACACAA TTCAGTGTTT chrX:16683915-16684035 89 1.99e-04 CAAGCAGTTG GCAAGCAG TGTCAGAAAT chr2L:19377508-19377628 5 2.14e-04 AAGG ACACACAG ACGATAAGAC chr3L:16769988-16770108 29 2.54e-04 CTGCCCGTTC ACACGCAC ACGATAAATG chr2L:16318192-16318312 28 2.74e-04 TGAAGCGAAA ACAAACAG CACAATTTAG chr3R:31709404-31709524 62 3.03e-04 GTTACAAGTC ACAAGCAC TCTCACACTC chr3L:12037838-12037958 36 3.59e-04 GGAGTGGATG CCACACAC TGGGCATAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAMACAV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:13064102-13064222 1e-05 47_[+1]_65 chr2L:7306974-7307094 1e-05 58_[+1]_54 chr2R:10238131-10238251 1e-05 96_[+1]_16 chr2R:22401904-22402024 1e-05 36_[+1]_76 chr3R:23303441-23303561 1e-05 46_[+1]_66 chr2R:9553983-9554103 2.5e-05 90_[+1]_22 chr2L:7528206-7528326 2.5e-05 100_[+1]_12 chr3L:7961341-7961461 2.5e-05 24_[+1]_88 chrX:19643318-19643438 4e-05 64_[+1]_48 chr2L:13838773-13838893 4e-05 46_[+1]_66 chr2L:2494670-2494790 4e-05 44_[+1]_68 chr3R:6764968-6765088 4e-05 99_[+1]_13 chr3L:3305551-3305671 4.9e-05 44_[+1]_68 chr3R:23300804-23300924 4.9e-05 107_[+1]_5 chrX:6937557-6937677 4.9e-05 57_[+1]_55 chr2R:11541171-11541291 7.7e-05 112_[+1] chr2R:18609037-18609157 7.7e-05 73_[+1]_39 chr3R:25885276-25885396 7.7e-05 47_[+1]_65 chr2R:14432265-14432385 7.7e-05 51_[+1]_61 chr3L:4690809-4690929 7.7e-05 109_[+1]_3 chr2R:9414492-9414612 7.7e-05 40_[+1]_72 chr2R:16150421-16150541 7.7e-05 63_[+1]_49 chr3L:7859873-7859993 7.7e-05 39_[+1]_73 chr2L:1427906-1428026 7.7e-05 18_[+1]_94 chr2R:20126353-20126473 9.1e-05 90_[+1]_22 chr2L:5303770-5303890 9.1e-05 15_[+1]_97 chr3R:31549264-31549384 9.1e-05 75_[+1]_37 chr2L:21102538-21102658 0.0001 33_[+1]_79 chrX:15498962-15499082 0.0001 34_[+1]_78 chrX:16319326-16319446 0.00011 81_[+1]_31 chr2R:9116327-9116447 0.00013 23_[+1]_89 chrX:6615600-6615720 0.00013 90_[+1]_22 chr2R:11469709-11469829 0.00013 38_[+1]_74 chr3R:30765755-30765875 0.00013 1_[+1]_111 chr2L:2967106-2967226 0.00013 79_[+1]_33 chr3R:7108202-7108322 0.00013 53_[+1]_59 chr3R:18242694-18242814 0.00015 67_[+1]_45 chr3L:772346-772466 0.00015 60_[+1]_52 chr3R:5060424-5060544 0.00017 54_[+1]_58 chrX:3357713-3357833 0.00017 56_[+1]_56 chrX:16683915-16684035 0.0002 88_[+1]_24 chr2L:19377508-19377628 0.00021 4_[+1]_108 chr3L:16769988-16770108 0.00025 28_[+1]_84 chr2L:16318192-16318312 0.00027 27_[+1]_85 chr3R:31709404-31709524 0.0003 61_[+1]_51 chr3L:12037838-12037958 0.00036 35_[+1]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAMACAV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAMACAV width=8 seqs=46 chr3R:13064102-13064222 ( 48) GCACACAC 1 chr2L:7306974-7307094 ( 59) GCACACAC 1 chr2R:10238131-10238251 ( 97) GCACACAC 1 chr2R:22401904-22402024 ( 37) GCACACAC 1 chr3R:23303441-23303561 ( 47) GCACACAC 1 chr2R:9553983-9554103 ( 91) GCACACAA 1 chr2L:7528206-7528326 ( 101) GCACACAA 1 chr3L:7961341-7961461 ( 25) GCACACAA 1 chrX:19643318-19643438 ( 65) GCAAACAC 1 chr2L:13838773-13838893 ( 47) GCAAACAC 1 chr2L:2494670-2494790 ( 45) GCAAACAC 1 chr3R:6764968-6765088 ( 100) GCAAACAC 1 chr3L:3305551-3305671 ( 45) GCACACAG 1 chr3R:23300804-23300924 ( 108) GCACACAG 1 chrX:6937557-6937677 ( 58) GCACACAG 1 chr2R:11541171-11541291 ( 113) GCAAACAA 1 chr2R:18609037-18609157 ( 74) GCAAACAA 1 chr3R:25885276-25885396 ( 48) GCAAACAA 1 chr2R:14432265-14432385 ( 52) GCACGCAC 1 chr3L:4690809-4690929 ( 110) GCAAACAA 1 chr2R:9414492-9414612 ( 41) GCAAACAA 1 chr2R:16150421-16150541 ( 64) GCAAACAA 1 chr3L:7859873-7859993 ( 40) GCAAACAA 1 chr2L:1427906-1428026 ( 19) GCAAACAA 1 chr2R:20126353-20126473 ( 91) GCAAACAG 1 chr2L:5303770-5303890 ( 16) GCAAACAG 1 chr3R:31549264-31549384 ( 76) GCAAACAG 1 chr2L:21102538-21102658 ( 34) GCACGCAA 1 chrX:15498962-15499082 ( 35) GCACGCAA 1 chrX:16319326-16319446 ( 82) GCAAGCAC 1 chr2R:9116327-9116447 ( 24) GCACGCAG 1 chrX:6615600-6615720 ( 91) ACACACAC 1 chr2R:11469709-11469829 ( 39) ACACACAC 1 chr3R:30765755-30765875 ( 2) ACACACAC 1 chr2L:2967106-2967226 ( 80) ACACACAC 1 chr3R:7108202-7108322 ( 54) ACACACAC 1 chr3R:18242694-18242814 ( 68) GCAAGCAA 1 chr3L:772346-772466 ( 61) GCAAGCAA 1 chr3R:5060424-5060544 ( 55) ACACACAA 1 chrX:3357713-3357833 ( 57) ACACACAA 1 chrX:16683915-16684035 ( 89) GCAAGCAG 1 chr2L:19377508-19377628 ( 5) ACACACAG 1 chr3L:16769988-16770108 ( 29) ACACGCAC 1 chr2L:16318192-16318312 ( 28) ACAAACAG 1 chr3R:31709404-31709524 ( 62) ACAAGCAC 1 chr3L:12037838-12037958 ( 36) CCACACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAMACAV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3254 E= 1.5e-002 -31 -328 187 -1217 -1217 225 -1217 -1217 176 -1217 -1217 -1217 63 137 -1217 -1217 140 -1217 10 -1217 -1217 225 -1217 -1217 176 -1217 -1217 -1217 32 97 10 -1217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAMACAV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 1.5e-002 0.239130 0.021739 0.739130 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.456522 0.543478 0.000000 0.000000 0.782609 0.000000 0.217391 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.369565 0.413043 0.217391 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAMACAV MEME-1 regular expression -------------------------------------------------------------------------------- [GA]CA[CA][AG]CA[CAG] -------------------------------------------------------------------------------- Time 8.47 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTKTGYK MEME-2 width = 8 sites = 52 llr = 415 E-value = 5.5e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTKTGYK MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::2:52 probability G :a:62a:4 matrix T a:a46:54 bits 2.3 * * 2.1 * * 1.8 *** * 1.6 *** * Relative 1.4 *** * Entropy 1.2 **** * (11.5 bits) 0.9 **** ** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGCG consensus TC TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKTGYK MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7043185-7043305 64 8.66e-06 GCATTAGGTG TGTGTGCG CTTTCCATTG chr2R:22312719-22312839 7 8.66e-06 TACTCA TGTGTGCG CCATGTATGC chr2R:9553983-9554103 109 8.66e-06 ACTTTTTGTA TGTGTGCG CGCA chr3R:13064102-13064222 94 2.06e-05 TATGTGCCAC TGTGTGTG TGGGCGGAGC chr2R:13337280-13337400 53 2.06e-05 GACGAACAAC TGTGTGTG CCGCGGAACT chr3R:23803813-23803933 96 2.06e-05 AGTGAGCGAG TGTGTGTG CCTAGCATGG chr3R:16264053-16264173 102 3.31e-05 TTTTTTTAAA TGTGTGCT TTTTTGTTGA chr2R:20126353-20126473 53 3.31e-05 TCTGCATAAT TGTGTGCT TAACGCGTGC chr3L:20664091-20664211 103 3.31e-05 AATTTTTGTG TGTGTGCT GTCTGTTGTT chr3R:28857463-28857583 97 6.27e-05 GATTGCGTTC TGTGTGTT TGCCTTGTGC chr2L:8554491-8554611 80 6.27e-05 GAAGCCACTG TGTTTGCG ATTGGCTTTG chr3R:16069404-16069524 75 6.27e-05 TAGGAAATTT TGTGTGTT TTGGTTTTTG chr2R:22540014-22540134 50 6.27e-05 TAAATTTCCA TGTTTGCG CACTTAACAG chrX:4458032-4458152 102 6.27e-05 TTCATCtgtt tgtttgcg tgtctgtttg chr2L:7528206-7528326 33 6.27e-05 TCATTCAACA TGTGTGTT ATCAGTGAGG chr2L:7149024-7149144 70 6.27e-05 CGGGCTGTGT TGTGTGTT TTTAGTTGTT chr2R:22402970-22403090 100 6.27e-05 AATGGTGCGA TGTTTGCG TTGTCTTCTT chr2R:10568424-10568544 108 7.81e-05 TTTGTCCCAC TGTGCGCG TGATG chr3L:12037838-12037958 12 1.01e-04 GGCCATCACG TGTGGGCG CCACATGGAG chrX:4322750-4322870 41 1.01e-04 TGAAGTCCTT TGTGGGCG AAACCGTATA chr3R:20276184-20276304 6 1.40e-04 CCTGT TGTTTGCT CAACACAACG chr3L:11540383-11540503 39 1.40e-04 TGCATACTCA TGTGTGTC AATATTTGGT chrX:10582188-10582308 40 1.40e-04 aACACGGCCG TGTGTGTC TGTCTGTGTT chr2L:16520044-16520164 67 1.40e-04 tttttttttt tgtttgct tgGGATCGCT chrX:11660586-11660706 61 1.40e-04 tcgctcgcaa tgtttgct ttgcatttgt chr2R:9548249-9548369 101 1.40e-04 GCTTAGTGGC TGTGTGTC GGCTGCCTTT chr2R:18583386-18583506 105 1.40e-04 GCGCTGCACT TGTGCGTG TATCTCGC chr3R:10203711-10203831 31 1.40e-04 CAAATATTTA TGTTTGCT TACAGTGCAT chrX:2166236-2166356 36 1.40e-04 TGCGCGAAAA TGTGCGTG GCAATCAAGC chr2L:10615170-10615290 81 1.40e-04 AATGTCTCTT TGTGTGTC AGTCCGTGCT chr3L:15729540-15729660 36 1.58e-04 CACGGTGTGT TGTGGGTG TTTCAAAATG chrX:6090988-6091108 91 1.58e-04 GGGTGCCTAC TGTGGGTG CGTTACACAG chr3R:26436681-26436801 103 1.91e-04 TATAACCTAA TGTTTGTT ATAACCTAAT chr2R:18609037-18609157 31 1.91e-04 TCCCCCGTTT TGTTTGTT TGTCTGGAAT chr3L:8925786-8925906 92 1.91e-04 GTTATTATGT TGTTTGTT CGTTGTTTAT chr2L:18505621-18505741 84 1.91e-04 GCTCCTTAAT TGTGGGCT CTATTTTGAT chr3R:13320007-13320127 85 1.91e-04 GGAGCGCTAG TGTTTGTT TAATTCCGTT chr3L:3787933-3788053 24 2.26e-04 TGGCGTTCGA TGTGCGTT CGTCTGCTCT chr4:1031805-1031925 86 2.26e-04 TCGAGAAAAA TGTTCGCG TTACGTGCTG chr2R:24086537-24086657 60 2.26e-04 gataCCCGCG TGTGCGTT CGCATTTCAC chr2L:13838773-13838893 31 2.26e-04 CTTGTTCGAT TGTTCGCG GTGTTTATGC chr2L:22129966-22130086 74 2.26e-04 GAATATTTTT TGTGCGTT TGCTAGTTTT chrX:17830217-17830337 53 2.26e-04 GCTTTGTTGT TGTTTGCC TTTCGTATAC chrX:11493078-11493198 64 2.26e-04 ATTTTCATGG TGTGCGTT CACTTTAAGC chrX:6937557-6937677 25 2.26e-04 CATTAGCCGG TGTTTGCC TTAACCAaca chr3R:31549264-31549384 9 2.26e-04 TTTGCATT TGTTTGCC TTACAGATAC chr2R:16271944-16272064 12 2.32e-04 TTTTCGCTAC TGTGCGCC AGTGTGACCG chr2R:18846600-18846720 66 2.53e-04 GATAACCAAG TGTTGGCG AATTTCAAAA chr3R:4805015-4805135 7 2.90e-04 TACAAA TGTTTGTC AACTACACGA chr3L:8525419-8525539 6 3.24e-04 GTTGG TGTTGGTG GCCGCATCCC chr3R:5086747-5086867 80 3.45e-04 GAAAAACAGC TGTTGGCT AGACGCCTAC chr2L:20647464-20647584 16 4.11e-04 AGTATTTTCT TGTTCGTC ACTTCTTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKTGYK MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7043185-7043305 8.7e-06 63_[+2]_49 chr2R:22312719-22312839 8.7e-06 6_[+2]_106 chr2R:9553983-9554103 8.7e-06 108_[+2]_4 chr3R:13064102-13064222 2.1e-05 93_[+2]_19 chr2R:13337280-13337400 2.1e-05 52_[+2]_60 chr3R:23803813-23803933 2.1e-05 95_[+2]_17 chr3R:16264053-16264173 3.3e-05 101_[+2]_11 chr2R:20126353-20126473 3.3e-05 52_[+2]_60 chr3L:20664091-20664211 3.3e-05 102_[+2]_10 chr3R:28857463-28857583 6.3e-05 96_[+2]_16 chr2L:8554491-8554611 6.3e-05 79_[+2]_33 chr3R:16069404-16069524 6.3e-05 74_[+2]_38 chr2R:22540014-22540134 6.3e-05 49_[+2]_63 chrX:4458032-4458152 6.3e-05 101_[+2]_11 chr2L:7528206-7528326 6.3e-05 32_[+2]_80 chr2L:7149024-7149144 6.3e-05 69_[+2]_43 chr2R:22402970-22403090 6.3e-05 99_[+2]_13 chr2R:10568424-10568544 7.8e-05 107_[+2]_5 chr3L:12037838-12037958 0.0001 11_[+2]_101 chrX:4322750-4322870 0.0001 40_[+2]_72 chr3R:20276184-20276304 0.00014 5_[+2]_107 chr3L:11540383-11540503 0.00014 38_[+2]_74 chrX:10582188-10582308 0.00014 39_[+2]_73 chr2L:16520044-16520164 0.00014 66_[+2]_46 chrX:11660586-11660706 0.00014 60_[+2]_52 chr2R:9548249-9548369 0.00014 100_[+2]_12 chr2R:18583386-18583506 0.00014 104_[+2]_8 chr3R:10203711-10203831 0.00014 30_[+2]_82 chrX:2166236-2166356 0.00014 35_[+2]_77 chr2L:10615170-10615290 0.00014 80_[+2]_32 chr3L:15729540-15729660 0.00016 35_[+2]_77 chrX:6090988-6091108 0.00016 90_[+2]_22 chr3R:26436681-26436801 0.00019 102_[+2]_10 chr2R:18609037-18609157 0.00019 30_[+2]_82 chr3L:8925786-8925906 0.00019 91_[+2]_21 chr2L:18505621-18505741 0.00019 83_[+2]_29 chr3R:13320007-13320127 0.00019 84_[+2]_28 chr3L:3787933-3788053 0.00023 23_[+2]_89 chr4:1031805-1031925 0.00023 85_[+2]_27 chr2R:24086537-24086657 0.00023 59_[+2]_53 chr2L:13838773-13838893 0.00023 30_[+2]_82 chr2L:22129966-22130086 0.00023 73_[+2]_39 chrX:17830217-17830337 0.00023 52_[+2]_60 chrX:11493078-11493198 0.00023 63_[+2]_49 chrX:6937557-6937677 0.00023 24_[+2]_88 chr3R:31549264-31549384 0.00023 8_[+2]_104 chr2R:16271944-16272064 0.00023 11_[+2]_101 chr2R:18846600-18846720 0.00025 65_[+2]_47 chr3R:4805015-4805135 0.00029 6_[+2]_106 chr3L:8525419-8525539 0.00032 5_[+2]_107 chr3R:5086747-5086867 0.00034 79_[+2]_33 chr2L:20647464-20647584 0.00041 15_[+2]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKTGYK MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTKTGYK width=8 seqs=52 chr2L:7043185-7043305 ( 64) TGTGTGCG 1 chr2R:22312719-22312839 ( 7) TGTGTGCG 1 chr2R:9553983-9554103 ( 109) TGTGTGCG 1 chr3R:13064102-13064222 ( 94) TGTGTGTG 1 chr2R:13337280-13337400 ( 53) TGTGTGTG 1 chr3R:23803813-23803933 ( 96) TGTGTGTG 1 chr3R:16264053-16264173 ( 102) TGTGTGCT 1 chr2R:20126353-20126473 ( 53) TGTGTGCT 1 chr3L:20664091-20664211 ( 103) TGTGTGCT 1 chr3R:28857463-28857583 ( 97) TGTGTGTT 1 chr2L:8554491-8554611 ( 80) TGTTTGCG 1 chr3R:16069404-16069524 ( 75) TGTGTGTT 1 chr2R:22540014-22540134 ( 50) TGTTTGCG 1 chrX:4458032-4458152 ( 102) TGTTTGCG 1 chr2L:7528206-7528326 ( 33) TGTGTGTT 1 chr2L:7149024-7149144 ( 70) TGTGTGTT 1 chr2R:22402970-22403090 ( 100) TGTTTGCG 1 chr2R:10568424-10568544 ( 108) TGTGCGCG 1 chr3L:12037838-12037958 ( 12) TGTGGGCG 1 chrX:4322750-4322870 ( 41) TGTGGGCG 1 chr3R:20276184-20276304 ( 6) TGTTTGCT 1 chr3L:11540383-11540503 ( 39) TGTGTGTC 1 chrX:10582188-10582308 ( 40) TGTGTGTC 1 chr2L:16520044-16520164 ( 67) TGTTTGCT 1 chrX:11660586-11660706 ( 61) TGTTTGCT 1 chr2R:9548249-9548369 ( 101) TGTGTGTC 1 chr2R:18583386-18583506 ( 105) TGTGCGTG 1 chr3R:10203711-10203831 ( 31) TGTTTGCT 1 chrX:2166236-2166356 ( 36) TGTGCGTG 1 chr2L:10615170-10615290 ( 81) TGTGTGTC 1 chr3L:15729540-15729660 ( 36) TGTGGGTG 1 chrX:6090988-6091108 ( 91) TGTGGGTG 1 chr3R:26436681-26436801 ( 103) TGTTTGTT 1 chr2R:18609037-18609157 ( 31) TGTTTGTT 1 chr3L:8925786-8925906 ( 92) TGTTTGTT 1 chr2L:18505621-18505741 ( 84) TGTGGGCT 1 chr3R:13320007-13320127 ( 85) TGTTTGTT 1 chr3L:3787933-3788053 ( 24) TGTGCGTT 1 chr4:1031805-1031925 ( 86) TGTTCGCG 1 chr2R:24086537-24086657 ( 60) TGTGCGTT 1 chr2L:13838773-13838893 ( 31) TGTTCGCG 1 chr2L:22129966-22130086 ( 74) TGTGCGTT 1 chrX:17830217-17830337 ( 53) TGTTTGCC 1 chrX:11493078-11493198 ( 64) TGTGCGTT 1 chrX:6937557-6937677 ( 25) TGTTTGCC 1 chr3R:31549264-31549384 ( 9) TGTTTGCC 1 chr2R:16271944-16272064 ( 12) TGTGCGCC 1 chr2R:18846600-18846720 ( 66) TGTTGGCG 1 chr3R:4805015-4805135 ( 7) TGTTTGTC 1 chr3L:8525419-8525539 ( 6) TGTTGGTG 1 chr3R:5086747-5086867 ( 80) TGTTGGCT 1 chr2L:20647464-20647584 ( 16) TGTTCGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKTGYK MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0197 E= 5.5e-001 -1234 -1234 -1234 178 -1234 -1234 231 -1234 -1234 -1234 -1234 178 -1234 -1234 151 54 -1234 0 -39 112 -1234 -1234 231 -1234 -1234 125 -1234 78 -1234 -13 100 47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKTGYK MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 5.5e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.576923 0.423077 0.000000 0.211538 0.153846 0.634615 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.192308 0.403846 0.403846 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKTGYK MEME-2 regular expression -------------------------------------------------------------------------------- TGT[GT][TC]G[CT][GT] -------------------------------------------------------------------------------- Time 14.69 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTCGCMC MEME-3 width = 8 sites = 19 llr = 180 E-value = 3.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTCGCMC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:::::4: pos.-specific C :a:8176a probability G 9:1293:: matrix T ::9:::1: bits 2.3 * * 2.1 ** * * 1.8 ** * * 1.6 ** ** * Relative 1.4 ****** * Entropy 1.2 ****** * (13.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCTCGCCC consensus GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCGCMC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:1031805-1031925 50 4.97e-06 TAGGACTTCT GCTCGCCC GCACACTTCT chr2R:16271944-16272064 34 4.97e-06 TGACCGTTCT GCTCGCCC AGCTAAATAC chrX:13805686-13805806 46 4.97e-06 CCGTGTTTAT GCTCGCCc tctgtctctc chrX:19643318-19643438 7 9.72e-06 CTGACA GCTCGGCC CCAGTGTAGC chr2R:16610065-16610185 82 9.72e-06 GAATTTATTA GCTCGGCC TAAAAGTAGG chr3L:16769988-16770108 5 1.67e-05 TCTC GCTCGCAC ACTTTACTGC chr3R:26230188-26230308 9 1.67e-05 TCCGTTTC GCTCGCAC CCGCCTGTGG chr2L:7828276-7828396 77 1.67e-05 GTGCCCTCTT GCTCGCAC AGTAGCGGCG chr3R:13875101-13875221 68 1.67e-05 CTGGCGTCTC GCTCGCAC ACGTGGCTCG chr2R:12274358-12274478 97 1.67e-05 GGCGACGGCG GCTCGCAC CGGCTGCATT chrX:6279211-6279331 19 2.34e-05 TATTTTACTT GCTCGGAC GTCCGCTCTC chr3L:3080776-3080896 77 2.81e-05 GTGGTGATTA GCTGGCCC AAACTACAAT chrX:20507869-20507989 12 3.61e-05 GAGAGAAAGG GCTGGGCC ACTTTACTTC chr2R:21160534-21160654 27 3.61e-05 CGAAATTAGA GCTGGGCC AAAGTCGATG chr3R:21377252-21377372 93 4.61e-05 TTTTTTGCTA GCGCGGCC GACACGCAGA chr3R:5086747-5086867 62 5.09e-05 TGAATACGGA GCGCGCAC GAAAAACAGC chrX:15498962-15499082 59 5.78e-05 CTCGTCGATC GCTCGCTC AGCGGATCGG chr2R:14008441-14008561 15 6.30e-05 TTGCCTTCTC GCTCCCCC AGCCACCCAC chr3R:31709404-31709524 76 8.12e-05 GCACTCTCAC ACTCGCCC AGACACAGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCGCMC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:1031805-1031925 5e-06 49_[+3]_63 chr2R:16271944-16272064 5e-06 33_[+3]_79 chrX:13805686-13805806 5e-06 45_[+3]_67 chrX:19643318-19643438 9.7e-06 6_[+3]_106 chr2R:16610065-16610185 9.7e-06 81_[+3]_31 chr3L:16769988-16770108 1.7e-05 4_[+3]_108 chr3R:26230188-26230308 1.7e-05 8_[+3]_104 chr2L:7828276-7828396 1.7e-05 76_[+3]_36 chr3R:13875101-13875221 1.7e-05 67_[+3]_45 chr2R:12274358-12274478 1.7e-05 96_[+3]_16 chrX:6279211-6279331 2.3e-05 18_[+3]_94 chr3L:3080776-3080896 2.8e-05 76_[+3]_36 chrX:20507869-20507989 3.6e-05 11_[+3]_101 chr2R:21160534-21160654 3.6e-05 26_[+3]_86 chr3R:21377252-21377372 4.6e-05 92_[+3]_20 chr3R:5086747-5086867 5.1e-05 61_[+3]_51 chrX:15498962-15499082 5.8e-05 58_[+3]_54 chr2R:14008441-14008561 6.3e-05 14_[+3]_98 chr3R:31709404-31709524 8.1e-05 75_[+3]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCGCMC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTCGCMC width=8 seqs=19 chr4:1031805-1031925 ( 50) GCTCGCCC 1 chr2R:16271944-16272064 ( 34) GCTCGCCC 1 chrX:13805686-13805806 ( 46) GCTCGCCC 1 chrX:19643318-19643438 ( 7) GCTCGGCC 1 chr2R:16610065-16610185 ( 82) GCTCGGCC 1 chr3L:16769988-16770108 ( 5) GCTCGCAC 1 chr3R:26230188-26230308 ( 9) GCTCGCAC 1 chr2L:7828276-7828396 ( 77) GCTCGCAC 1 chr3R:13875101-13875221 ( 68) GCTCGCAC 1 chr2R:12274358-12274478 ( 97) GCTCGCAC 1 chrX:6279211-6279331 ( 19) GCTCGGAC 1 chr3L:3080776-3080896 ( 77) GCTGGCCC 1 chrX:20507869-20507989 ( 12) GCTGGGCC 1 chr2R:21160534-21160654 ( 27) GCTGGGCC 1 chr3R:21377252-21377372 ( 93) GCGCGGCC 1 chr3R:5086747-5086867 ( 62) GCGCGCAC 1 chrX:15498962-15499082 ( 59) GCTCGCTC 1 chr2R:14008441-14008561 ( 15) GCTCCCCC 1 chr3R:31709404-31709524 ( 76) ACTCGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCGCMC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.732 E= 3.1e+002 -249 -1089 223 -1089 -1089 224 -1089 -1089 -1089 -1089 -94 162 -1089 200 -36 -1089 -1089 -200 223 -1089 -1089 170 64 -1089 32 146 -1089 -246 -1089 224 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCGCMC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 3.1e+002 0.052632 0.000000 0.947368 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.105263 0.894737 0.000000 0.842105 0.157895 0.000000 0.000000 0.052632 0.947368 0.000000 0.000000 0.684211 0.315789 0.000000 0.368421 0.578947 0.000000 0.052632 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCGCMC MEME-3 regular expression -------------------------------------------------------------------------------- GCTCG[CG][CA]C -------------------------------------------------------------------------------- Time 20.82 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGRYRGC MEME-4 width = 8 sites = 16 llr = 158 E-value = 1.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGRYRGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::4:4:: pos.-specific C :a::4::a probability G a:a626a: matrix T ::::4::: bits 2.3 *** ** 2.1 *** ** 1.8 *** ** 1.6 *** ** Relative 1.4 *** ** Entropy 1.2 **** *** (14.2 bits) 0.9 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGGCGGC consensus ATA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGRYRGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7828276-7828396 89 3.16e-06 TCGCACAGTA GCGGCGGC TTGCGTCGCC chr2R:14488412-14488532 47 3.16e-06 TGTCAAATGT GCGGCGGC CACAAAGATT chr3R:13064102-13064222 110 7.52e-06 TGTGGGCGGA GCGGTGGC GCG chr3R:10567023-10567143 79 7.52e-06 AGATAAGGCA GCGGTGGC GCGCAATTGT chr2R:12274358-12274478 88 1.21e-05 GCGCCACCTG GCGACGGC GGCTCGCACC chr3R:16069404-16069524 29 1.52e-05 gcggagcgga gcgggggc ggtacagcgg chr3R:6647071-6647191 46 1.52e-05 GGAGAGGGGC GCGGGGGC ACCGGTTTCG chr2R:22312719-22312839 23 1.98e-05 CGCCATGTAT GCGGCAGC TGAGTGGCAA chr3R:5300772-5300892 54 1.98e-05 CGCCCGTGGA GCGGCAGC AACGGTATAA chr3R:16025912-16026032 72 2.62e-05 GGAAGAGCGC GCGATGGC AAGGCAACAC chr3R:26056543-26056663 111 2.62e-05 ACAAAAGCAT GCGATGGC AG chr2R:18846600-18846720 2 2.62e-05 A GCGATGGC CCTTCGATTG chr3L:16023414-16023534 11 3.26e-05 agcagcagcg gcggtagc agagcagcaa chr2R:10819836-10819956 97 4.38e-05 TGCCGTACCT GCGACAGC TAACGGTGAA chr2R:25011246-25011366 103 4.38e-05 CATTTGTTTG GCGACAGC TGCACCCACA chr2R:14432265-14432385 7 6.41e-05 GGGAGA GCGAGAGC GGGACAGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGRYRGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7828276-7828396 3.2e-06 88_[+4]_24 chr2R:14488412-14488532 3.2e-06 46_[+4]_66 chr3R:13064102-13064222 7.5e-06 109_[+4]_3 chr3R:10567023-10567143 7.5e-06 78_[+4]_34 chr2R:12274358-12274478 1.2e-05 87_[+4]_25 chr3R:16069404-16069524 1.5e-05 28_[+4]_84 chr3R:6647071-6647191 1.5e-05 45_[+4]_67 chr2R:22312719-22312839 2e-05 22_[+4]_90 chr3R:5300772-5300892 2e-05 53_[+4]_59 chr3R:16025912-16026032 2.6e-05 71_[+4]_41 chr3R:26056543-26056663 2.6e-05 110_[+4]_2 chr2R:18846600-18846720 2.6e-05 1_[+4]_111 chr3L:16023414-16023534 3.3e-05 10_[+4]_102 chr2R:10819836-10819956 4.4e-05 96_[+4]_16 chr2R:25011246-25011366 4.4e-05 102_[+4]_10 chr2R:14432265-14432385 6.4e-05 6_[+4]_106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGRYRGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGRYRGC width=8 seqs=16 chr2L:7828276-7828396 ( 89) GCGGCGGC 1 chr2R:14488412-14488532 ( 47) GCGGCGGC 1 chr3R:13064102-13064222 ( 110) GCGGTGGC 1 chr3R:10567023-10567143 ( 79) GCGGTGGC 1 chr2R:12274358-12274478 ( 88) GCGACGGC 1 chr3R:16069404-16069524 ( 29) GCGGGGGC 1 chr3R:6647071-6647191 ( 46) GCGGGGGC 1 chr2R:22312719-22312839 ( 23) GCGGCAGC 1 chr3R:5300772-5300892 ( 54) GCGGCAGC 1 chr3R:16025912-16026032 ( 72) GCGATGGC 1 chr3R:26056543-26056663 ( 111) GCGATGGC 1 chr2R:18846600-18846720 ( 2) GCGATGGC 1 chr3L:16023414-16023534 ( 11) GCGGTAGC 1 chr2R:10819836-10819956 ( 97) GCGACAGC 1 chr2R:25011246-25011366 ( 103) GCGACAGC 1 chr2R:14432265-14432385 ( 7) GCGAGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGRYRGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 1.6e+003 -1064 -1064 231 -1064 -1064 224 -1064 -1064 -1064 -1064 231 -1064 56 -1064 148 -1064 -1064 105 -11 37 34 -1064 163 -1064 -1064 -1064 231 -1064 -1064 224 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGRYRGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.6e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.437500 0.000000 0.562500 0.000000 0.000000 0.437500 0.187500 0.375000 0.375000 0.000000 0.625000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGRYRGC MEME-4 regular expression -------------------------------------------------------------------------------- GCG[GA][CT][GA]GC -------------------------------------------------------------------------------- Time 26.88 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGCGCC MEME-5 width = 8 sites = 2 llr = 25 E-value = 3.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGCGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::a:aa probability G aaaa:a:: matrix T :::::::: bits 2.3 ******** 2.1 ******** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGCGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21377252-21377372 19 3.16e-06 ATATTCACTT GGGGCGCC ATTACTCACC chr2L:10615170-10615290 111 3.16e-06 TGCCCGCTAG GGGGCGCC AC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21377252-21377372 3.2e-06 18_[+5]_94 chr2L:10615170-10615290 3.2e-06 110_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGCGCC width=8 seqs=2 chr3R:21377252-21377372 ( 19) GGGGCGCC 1 chr2L:10615170-10615290 ( 111) GGGGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 3.0e+004 -765 -765 230 -765 -765 -765 230 -765 -765 -765 230 -765 -765 -765 230 -765 -765 224 -765 -765 -765 -765 230 -765 -765 224 -765 -765 -765 224 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGCC MEME-5 regular expression -------------------------------------------------------------------------------- GGGGCGCC -------------------------------------------------------------------------------- Time 32.97 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:20641421-20641541 5.73e-02 120 chr3R:21822632-21822752 5.90e-01 120 chr2L:7810419-7810539 5.79e-01 120 chrX:12249023-12249143 9.98e-01 120 chr3L:8544100-8544220 8.83e-01 120 chr3R:13320007-13320127 4.39e-02 120 chrX:4322750-4322870 1.18e-01 120 chr2R:22911828-22911948 4.85e-01 120 chr3R:7108202-7108322 1.10e-01 120 chr3L:8440878-8440998 8.09e-01 120 chr3L:2591012-2591132 8.12e-02 120 chr3R:23303441-23303561 1.06e-01 46_[+1(1.04e-05)]_66 chr3R:11372779-11372899 2.10e-01 120 chrX:3073705-3073825 7.20e-01 120 chrX:8671442-8671562 5.16e-01 120 chr3R:26867442-26867562 2.85e-02 5_[+4(9.07e-05)]_107 chr2R:21909983-21910103 8.76e-01 120 chr3R:12644948-12645068 7.66e-01 120 chrX:6279211-6279331 1.23e-01 18_[+3(2.34e-05)]_94 chr2R:22401904-22402024 5.46e-02 36_[+1(1.04e-05)]_76 chr2R:12729303-12729423 3.26e-01 120 chr4:181043-181163 9.78e-01 120 chr3L:7961341-7961461 3.82e-02 24_[+1(2.50e-05)]_88 chr3R:23803813-23803933 7.86e-02 95_[+2(2.06e-05)]_17 chr2L:10615170-10615290 7.24e-04 110_[+5(3.16e-06)]_2 chrX:5564064-5564184 5.41e-01 120 chr2R:22407040-22407160 2.22e-03 78_[+5(3.86e-05)]_34 chr2R:14488412-14488532 3.22e-04 46_[+4(3.16e-06)]_66 chr2L:13296276-13296396 6.25e-02 120 chr2L:2967106-2967226 6.31e-02 120 chr3R:25662325-25662445 4.19e-01 120 chrX:618629-618749 6.32e-01 120 chr2R:12274358-12274478 2.47e-04 87_[+4(1.21e-05)]_1_[+3(1.67e-05)]_\ 16 chr3L:20664091-20664211 6.77e-03 98_[+2(2.06e-05)]_14 chr3L:22871055-22871175 5.57e-02 120 chr2R:16091943-16092063 4.60e-01 120 chr2R:22402970-22403090 1.13e-01 99_[+2(6.27e-05)]_13 chr2R:17477271-17477391 8.62e-01 120 chr3R:27826326-27826446 5.88e-01 120 chr2L:20647464-20647584 3.80e-01 120 chr2L:7149024-7149144 1.59e-01 69_[+2(6.27e-05)]_43 chr3L:17981220-17981340 7.37e-01 120 chr3L:9511325-9511445 8.37e-01 120 chr3R:6764968-6765088 3.69e-02 99_[+1(3.95e-05)]_13 chr3R:6973336-6973456 2.35e-01 120 chr3R:6647071-6647191 1.72e-03 45_[+4(1.52e-05)]_67 chr3L:3080776-3080896 2.83e-02 76_[+3(2.81e-05)]_36 chr3R:13448508-13448628 5.92e-01 120 chr2L:1427906-1428026 8.72e-02 18_[+1(7.70e-05)]_94 chr3R:5300772-5300892 1.97e-02 53_[+4(1.98e-05)]_59 chr3L:7859873-7859993 8.80e-02 39_[+1(7.70e-05)]_73 chr2L:7528206-7528326 3.13e-03 32_[+2(6.27e-05)]_60_[+1(2.50e-05)]_\ 12 chr2R:10568424-10568544 1.60e-01 107_[+2(7.81e-05)]_5 chr3R:16441669-16441789 5.24e-01 120 chrX:13820757-13820877 9.97e-01 120 chr2L:6462443-6462563 2.11e-01 120 chr3L:3875175-3875295 9.93e-01 120 chr3R:31709404-31709524 9.32e-02 75_[+3(8.12e-05)]_37 chrX:2166236-2166356 7.53e-02 120 chr2R:21514508-21514628 9.93e-01 120 chr2R:9870601-9870721 9.19e-01 120 chr3R:31549264-31549384 1.98e-02 75_[+1(9.09e-05)]_37 chr2R:9543678-9543798 4.41e-02 120 chrX:19839244-19839364 1.70e-02 120 chr2R:16150421-16150541 6.08e-02 63_[+1(7.70e-05)]_49 chr2R:21527392-21527512 9.22e-01 120 chr3L:16023414-16023534 2.73e-02 10_[+4(3.26e-05)]_102 chr2L:18505621-18505741 1.19e-01 120 chr2L:2494670-2494790 6.41e-02 44_[+1(3.95e-05)]_68 chr3R:10203711-10203831 3.08e-01 120 chrX:6937557-6937677 2.17e-02 57_[+1(4.95e-05)]_55 chr2L:8543342-8543462 3.02e-01 120 chr2L:3888358-3888478 6.97e-02 120 chrX:11493078-11493198 7.84e-02 120 chr2R:25190596-25190716 1.87e-01 120 chrX:13805686-13805806 1.51e-02 45_[+3(4.97e-06)]_67 chr3R:16769553-16769673 8.95e-01 120 chr3R:20833840-20833960 4.85e-01 120 chr2R:19310935-19311055 9.76e-01 120 chr3R:29251581-29251701 3.06e-01 120 chr2R:6707757-6707877 7.44e-01 120 chr2L:4292678-4292798 9.04e-02 120 chr2R:20590634-20590754 4.78e-01 120 chr2R:9553983-9554103 1.59e-03 90_[+1(2.50e-05)]_10_[+2(8.66e-06)]_\ 4 chr3R:21377252-21377372 2.97e-05 18_[+5(3.16e-06)]_66_[+3(4.61e-05)]_\ 20 chr2L:5303770-5303890 1.64e-01 15_[+1(9.09e-05)]_97 chrX:10786776-10786896 9.36e-01 120 chr2R:9414492-9414612 2.34e-01 40_[+1(7.70e-05)]_72 chrX:4458032-4458152 1.81e-01 101_[+2(6.27e-05)]_11 chr2R:10238131-10238251 4.92e-04 51_[+1(9.09e-05)]_13_[+1(3.95e-05)]_\ 16_[+1(1.04e-05)]_16 chr2R:18846600-18846720 7.03e-03 1_[+4(2.62e-05)]_111 chr2R:18583386-18583506 2.45e-02 120 chrX:10115672-10115792 2.08e-01 120 chr3R:19648674-19648794 7.20e-01 120 chr3L:4690809-4690929 9.56e-02 109_[+1(7.70e-05)]_3 chr3R:10567023-10567143 4.24e-03 78_[+4(7.52e-06)]_34 chr2L:3100907-3101027 9.28e-01 120 chr2R:8242589-8242709 3.04e-02 120 chrX:3357713-3357833 1.63e-01 120 chrX:18837171-18837291 8.07e-01 120 chr2R:16610065-16610185 1.09e-01 47_[+3(2.81e-05)]_26_[+3(9.72e-06)]_\ 31 chr2L:2749240-2749360 1.95e-01 120 chrX:3538883-3539003 1.49e-01 120 chr3R:4805015-4805135 1.73e-01 120 chr2R:22540014-22540134 1.28e-02 49_[+2(6.27e-05)]_63 chr2R:9548249-9548369 3.91e-02 120 chr2R:13337280-13337400 2.62e-02 52_[+2(2.06e-05)]_60 chr3R:26859384-26859504 9.52e-01 120 chr3L:9762238-9762358 4.34e-01 120 chrX:17294297-17294417 5.30e-01 120 chr3L:8925786-8925906 3.70e-01 120 chr2L:8423903-8424023 9.69e-01 120 chr3L:11334132-11334252 9.95e-01 120 chrX:6090988-6091108 5.85e-03 120 chr3R:26056543-26056663 1.15e-01 110_[+4(2.62e-05)]_2 chrX:11154032-11154152 7.12e-01 120 chr3R:30765755-30765875 9.40e-03 120 chr2R:11469709-11469829 1.65e-01 120 chr2L:7154999-7155119 9.88e-01 120 chr2R:17535702-17535822 3.60e-01 120 chr2L:8080783-8080903 9.88e-01 120 chr3R:13875101-13875221 1.64e-03 67_[+3(1.67e-05)]_45 chr3L:15729540-15729660 5.66e-02 120 chrX:4609860-4609980 3.92e-01 120 chrX:17830217-17830337 4.75e-02 120 chr2L:22129966-22130086 3.03e-01 120 chr3R:6818731-6818851 8.73e-01 120 chr2L:13838773-13838893 1.01e-02 46_[+1(3.95e-05)]_66 chr3L:12391386-12391506 1.52e-01 120 chr2R:6607574-6607694 3.54e-03 66_[+5(3.86e-05)]_46 chr2R:22641301-22641421 6.14e-01 120 chr3L:11429748-11429868 2.39e-01 120 chr3R:31689849-31689969 9.75e-01 120 chrX:11660586-11660706 7.28e-02 120 chr2R:6574856-6574976 3.63e-01 120 chr3R:5086747-5086867 2.08e-03 61_[+3(5.09e-05)]_51 chr2L:19817262-19817382 6.05e-01 120 chr2R:21160534-21160654 8.38e-02 26_[+3(3.61e-05)]_86 chr3L:8525419-8525539 1.88e-01 120 chrX:1370169-1370289 8.71e-01 120 chr2L:16520044-16520164 3.59e-01 120 chr3L:1302713-1302833 6.27e-01 120 chrX:18517483-18517603 4.55e-01 120 chr3L:4353934-4354054 1.16e-01 120 chr2R:15835512-15835632 9.85e-01 120 chrX:15498962-15499082 1.36e-02 58_[+3(5.78e-05)]_54 chr2L:3601018-3601138 8.51e-01 120 chrX:17887366-17887486 8.44e-01 120 chr3R:9039548-9039668 9.95e-01 120 chr2R:14432265-14432385 5.67e-04 6_[+4(6.41e-05)]_37_[+1(7.70e-05)]_\ 61 chr3R:16069404-16069524 2.19e-04 28_[+4(1.52e-05)]_38_[+2(6.27e-05)]_\ 38 chr2L:7617009-7617129 1.00e+00 120 chr2R:22312719-22312839 1.00e-04 6_[+2(8.66e-06)]_8_[+4(1.98e-05)]_\ 90 chr3R:21850217-21850337 3.36e-01 120 chrX:15063830-15063950 2.04e-01 120 chrX:8436845-8436965 9.81e-01 120 chr3R:23300804-23300924 3.05e-02 107_[+1(4.95e-05)]_5 chrX:6663274-6663394 2.20e-01 120 chr3L:14172651-14172771 9.87e-01 120 chr3R:5060424-5060544 7.51e-02 120 chr3R:16847388-16847508 1.77e-03 120 chrX:17176687-17176807 9.95e-01 120 chr3R:17655148-17655268 9.32e-01 120 chr3L:13022555-13022675 5.66e-01 120 chr3R:19094146-19094266 1.65e-01 120 chr2R:10196389-10196509 4.76e-01 120 chr2L:16318192-16318312 2.13e-02 120 chr2L:11331802-11331922 9.93e-01 120 chr3R:21865239-21865359 7.06e-02 120 chr2L:8554491-8554611 2.47e-01 79_[+2(6.27e-05)]_33 chrX:19371681-19371801 5.29e-01 120 chr2R:9712385-9712505 4.37e-01 120 chr2L:7635319-7635439 9.80e-01 120 chr3R:16025912-16026032 1.14e-02 71_[+4(2.62e-05)]_41 chr3R:8171622-8171742 6.70e-01 120 chr3R:29265285-29265405 9.17e-01 120 chr3L:6059215-6059335 2.11e-01 120 chr3R:4775471-4775591 9.98e-01 120 chr2R:17683496-17683616 8.22e-02 120 chr2L:5981607-5981727 3.10e-01 120 chr2R:24669280-24669400 1.51e-01 120 chr3R:25885276-25885396 2.04e-01 47_[+1(7.70e-05)]_65 chr3R:9345020-9345140 7.71e-01 120 chr2R:16271944-16272064 1.38e-03 33_[+3(4.97e-06)]_79 chr2R:20126353-20126473 1.14e-02 52_[+2(3.31e-05)]_30_[+1(9.09e-05)]_\ 22 chr2L:7306974-7307094 2.76e-04 58_[+1(1.04e-05)]_54 chr2R:24086537-24086657 1.61e-01 120 chr2L:838195-838315 8.67e-01 120 chr2R:18609037-18609157 2.36e-02 73_[+1(7.70e-05)]_39 chrX:10582188-10582308 1.13e-01 120 chr3R:29223380-29223500 4.46e-01 120 chr3R:28845319-28845439 4.29e-01 120 chr2L:14376917-14377037 9.30e-01 120 chrX:16319326-16319446 3.05e-02 120 chr2R:12025140-12025260 6.65e-01 120 chrX:16441334-16441454 9.99e-01 120 chr3R:27138078-27138198 2.36e-01 120 chr3R:23733091-23733211 9.98e-01 120 chr3R:30022664-30022784 2.23e-01 120 chrX:16683915-16684035 2.14e-01 120 chr3R:11735470-11735590 4.61e-02 51_[+4(8.42e-05)]_61 chr2R:21060551-21060671 9.81e-01 120 chr3R:6760942-6761062 9.47e-01 120 chr2L:7828276-7828396 5.60e-05 46_[+4(6.41e-05)]_22_[+3(1.67e-05)]_\ 4_[+4(3.16e-06)]_24 chrX:19643318-19643438 3.53e-04 6_[+3(9.72e-06)]_50_[+1(3.95e-05)]_\ 48 chr3R:23387058-23387178 1.00e+00 120 chr3L:3305551-3305671 1.25e-01 30_[+1(7.70e-05)]_6_[+1(4.95e-05)]_\ 68 chr2R:6636348-6636468 9.99e-01 120 chr3L:11540383-11540503 4.00e-02 120 chr3R:28857463-28857583 1.38e-01 96_[+2(6.27e-05)]_16 chr4:1031805-1031925 1.43e-03 49_[+3(4.97e-06)]_63 chr2L:6179121-6179241 4.83e-01 120 chr2L:21102538-21102658 3.43e-01 120 chr3L:772346-772466 4.47e-01 120 chrX:20507869-20507989 4.04e-02 11_[+3(3.61e-05)]_101 chr2L:7043185-7043305 9.24e-02 63_[+2(8.66e-06)]_49 chr3R:9874690-9874810 4.58e-01 120 chr2L:901531-901651 4.55e-01 120 chr3R:26230188-26230308 1.21e-03 8_[+3(1.67e-05)]_104 chr3L:5926138-5926258 7.60e-01 120 chr3R:16264053-16264173 4.73e-02 101_[+2(3.31e-05)]_11 chr3R:20276184-20276304 1.78e-01 120 chr2R:25011246-25011366 1.14e-02 102_[+4(4.38e-05)]_10 chr2R:22387657-22387777 8.45e-01 120 chr2R:14008441-14008561 6.93e-03 14_[+3(6.30e-05)]_98 chr3R:26436681-26436801 5.82e-01 120 chr3L:12037838-12037958 1.41e-03 120 chr2L:19377508-19377628 3.76e-01 120 chr2L:6339647-6339767 4.15e-01 120 chr2R:11541171-11541291 3.52e-02 64_[+1(7.70e-05)]_40_[+1(7.70e-05)] chrX:6615600-6615720 3.17e-01 120 chr3R:18242694-18242814 8.99e-02 120 chr3R:13064102-13064222 1.23e-06 47_[+1(1.04e-05)]_38_[+2(2.06e-05)]_\ 8_[+4(7.52e-06)]_3 chr2R:9116327-9116447 2.85e-03 19_[+3(1.67e-05)]_93 chr3L:27267316-27267436 9.83e-01 120 chr2L:9570932-9571052 2.30e-01 120 chr3L:5987727-5987847 9.75e-01 120 chrX:20631296-20631416 8.46e-01 120 chr3R:31687900-31688020 5.34e-01 120 chr3R:18663663-18663783 4.19e-01 120 chr2L:7049027-7049147 8.41e-01 120 chr3L:16582812-16582932 9.01e-01 120 chr2R:10819836-10819956 3.67e-02 96_[+4(4.38e-05)]_16 chr3R:15983759-15983879 8.89e-01 120 chr3L:3787933-3788053 1.78e-01 120 chr3R:8563954-8564074 9.95e-01 120 chr3L:5152565-5152685 1.45e-01 120 chrX:3068442-3068562 2.39e-01 120 chr2L:6956893-6957013 4.83e-01 120 chr3L:16769988-16770108 9.50e-04 4_[+3(1.67e-05)]_108 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************