******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Meics.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:3175614-3175734 1.0000 120 chr3L:6619196-6619316 1.0000 120 chr2R:7927091-7927211 1.0000 120 chr2R:23569815-23569935 1.0000 120 chr3R:9254897-9255017 1.0000 120 chrX:11561606-11561726 1.0000 120 chr3R:30870616-30870736 1.0000 120 chr2R:11340159-11340279 1.0000 120 chr3R:18895402-18895522 1.0000 120 chr2R:8158598-8158718 1.0000 120 chr2L:3301196-3301316 1.0000 120 chr2L:16801924-16802044 1.0000 120 chr2L:20082288-20082408 1.0000 120 chr2R:14141371-14141491 1.0000 120 chr2R:10252729-10252849 1.0000 120 chr3R:4559147-4559267 1.0000 120 chr3R:29479427-29479547 1.0000 120 chrX:20156086-20156206 1.0000 120 chr2R:23748321-23748441 1.0000 120 chr2R:12507546-12507666 1.0000 120 chr3R:8645976-8646096 1.0000 120 chrX:2638800-2638920 1.0000 120 chr3R:18738232-18738352 1.0000 120 chrX:18930085-18930205 1.0000 120 chr2L:16850558-16850678 1.0000 120 chr2L:21828968-21829088 1.0000 120 chr3L:20197352-20197472 1.0000 120 chr2L:20428748-20428868 1.0000 120 chr3R:4179023-4179143 1.0000 120 chr3R:4717740-4717860 1.0000 120 chr2L:19550594-19550714 1.0000 120 chr3L:1188933-1189053 1.0000 120 chr2L:6561669-6561789 1.0000 120 chr2L:10237721-10237841 1.0000 120 chr3R:15975573-15975693 1.0000 120 chrX:5891787-5891907 1.0000 120 chr2R:19310922-19311042 1.0000 120 chr2R:6206150-6206270 1.0000 120 chr2L:20078977-20079097 1.0000 120 chr3R:10034984-10035104 1.0000 120 chr3R:18380161-18380281 1.0000 120 chrX:19586989-19587109 1.0000 120 chr3R:21214907-21215027 1.0000 120 chr3L:14776353-14776473 1.0000 120 chr3L:11609647-11609767 1.0000 120 chr2L:1008130-1008250 1.0000 120 chrX:15520831-15520951 1.0000 120 chr2R:24306059-24306179 1.0000 120 chr3R:11178431-11178551 1.0000 120 chr3L:1534232-1534352 1.0000 120 chr2R:10735512-10735632 1.0000 120 chr3L:15072340-15072460 1.0000 120 chrX:14850210-14850330 1.0000 120 chrX:19243199-19243319 1.0000 120 chr4:695062-695182 1.0000 120 chr3L:17547507-17547627 1.0000 120 chr2R:11641964-11642084 1.0000 120 chr3R:29995208-29995328 1.0000 120 chr2L:11845263-11845383 1.0000 120 chr3R:5081612-5081732 1.0000 120 chr2L:1218646-1218766 1.0000 120 chr2R:12954359-12954479 1.0000 120 chr2L:3791683-3791803 1.0000 120 chr3L:20471399-20471519 1.0000 120 chr2R:7727698-7727818 1.0000 120 chr2L:22133106-22133226 1.0000 120 chr3L:14776146-14776266 1.0000 120 chr3R:16353336-16353456 1.0000 120 chr3R:25652367-25652487 1.0000 120 chr2R:10252930-10253050 1.0000 120 chr2R:8150334-8150454 1.0000 120 chrX:12583534-12583654 1.0000 120 chr3L:22461370-22461490 1.0000 120 chrX:6361330-6361450 1.0000 120 chr3L:8912566-8912686 1.0000 120 chr2R:4618862-4618982 1.0000 120 chr3R:18468960-18469080 1.0000 120 chrX:5422287-5422407 1.0000 120 chr2R:7457796-7457916 1.0000 120 chr2R:10739826-10739946 1.0000 120 chr3R:4421672-4421792 1.0000 120 chr2L:12454918-12455038 1.0000 120 chr3R:21399887-21400007 1.0000 120 chr2L:8931323-8931443 1.0000 120 chr2R:9515902-9516022 1.0000 120 chrX:11086398-11086518 1.0000 120 chr3L:11596762-11596882 1.0000 120 chrX:16091553-16091673 1.0000 120 chr2L:6077445-6077565 1.0000 120 chr3R:20988086-20988206 1.0000 120 chr2R:12960178-12960298 1.0000 120 chr3R:11640090-11640210 1.0000 120 chrX:5329701-5329821 1.0000 120 chrX:19243400-19243520 1.0000 120 chrX:19261687-19261807 1.0000 120 chr2L:3323422-3323542 1.0000 120 chrX:18901084-18901204 1.0000 120 chr3L:7368744-7368864 1.0000 120 chr3R:6374350-6374470 1.0000 120 chrX:17495352-17495472 1.0000 120 chr3R:10133065-10133185 1.0000 120 chr3R:23181333-23181453 1.0000 120 chrX:9594562-9594682 1.0000 120 chrX:12730552-12730672 1.0000 120 chr2L:8305612-8305732 1.0000 120 chr2R:6646178-6646298 1.0000 120 chr3L:17547709-17547829 1.0000 120 chr2R:17686497-17686617 1.0000 120 chr3R:9701302-9701422 1.0000 120 chrX:19646085-19646205 1.0000 120 chr3R:22108428-22108548 1.0000 120 chr2L:20084558-20084678 1.0000 120 chr2R:8725772-8725892 1.0000 120 chr3L:11074650-11074770 1.0000 120 chr4:69625-69745 1.0000 120 chr2L:1048480-1048600 1.0000 120 chr3R:4398166-4398286 1.0000 120 chr3R:25855713-25855833 1.0000 120 chr3R:26105024-26105144 1.0000 120 chr2R:17637223-17637343 1.0000 120 chr2R:22648624-22648744 1.0000 120 chr3R:31020892-31021012 1.0000 120 chr2R:10806311-10806431 1.0000 120 chr3R:18793148-18793268 1.0000 120 chrX:3399381-3399501 1.0000 120 chr3L:157038-157158 1.0000 120 chrX:14923390-14923510 1.0000 120 chr3R:20311122-20311242 1.0000 120 chr3R:4398370-4398490 1.0000 120 chrX:6439640-6439760 1.0000 120 chr3R:28959240-28959360 1.0000 120 chr3R:30325568-30325688 1.0000 120 chr3R:4179228-4179348 1.0000 120 chrX:11390140-11390260 1.0000 120 chr2R:14767308-14767428 1.0000 120 chr3R:6374148-6374268 1.0000 120 chr2L:19019223-19019343 1.0000 120 chr2L:18954077-18954197 1.0000 120 chrX:8573733-8573853 1.0000 120 chr3R:18438899-18439019 1.0000 120 chr3L:7866720-7866840 1.0000 120 chr2L:1619327-1619447 1.0000 120 chr2L:18658176-18658296 1.0000 120 chr2R:22661309-22661429 1.0000 120 chr2L:5800298-5800418 1.0000 120 chr3R:16214018-16214138 1.0000 120 chr3L:15034407-15034527 1.0000 120 chr3R:26555988-26556108 1.0000 120 chr3R:29651623-29651743 1.0000 120 chr2R:24139245-24139365 1.0000 120 chr3R:22547644-22547764 1.0000 120 chr3L:17791641-17791761 1.0000 120 chr2L:17558249-17558369 1.0000 120 chr3R:26333401-26333521 1.0000 120 chr3R:17526218-17526338 1.0000 120 chr2L:1135619-1135739 1.0000 120 chr3L:11556837-11556957 1.0000 120 chr3L:19087982-19088102 1.0000 120 chr2R:11633054-11633174 1.0000 120 chr3R:10688923-10689043 1.0000 120 chr3L:2913404-2913524 1.0000 120 chr3R:24544439-24544559 1.0000 120 chr3R:22121337-22121457 1.0000 120 chr3R:14875678-14875798 1.0000 120 chr3L:21859786-21859906 1.0000 120 chr2R:16916234-16916354 1.0000 120 chrX:8112852-8112972 1.0000 120 chrX:19646285-19646405 1.0000 120 chrX:18125598-18125718 1.0000 120 chrX:13208180-13208300 1.0000 120 chr3R:18508363-18508483 1.0000 120 chr2L:9864418-9864538 1.0000 120 chr3L:1609757-1609877 1.0000 120 chr2R:21091935-21092055 1.0000 120 chr2L:3755269-3755389 1.0000 120 chrX:9350428-9350548 1.0000 120 chr3L:11785472-11785592 1.0000 120 chr3R:20950149-20950269 1.0000 120 chrX:9431554-9431674 1.0000 120 chrX:13676581-13676701 1.0000 120 chr3L:20276736-20276856 1.0000 120 chr2L:4811925-4812045 1.0000 120 chr3R:20273719-20273839 1.0000 120 chr3R:25968666-25968786 1.0000 120 chr3L:22065797-22065917 1.0000 120 chr2L:3228853-3228973 1.0000 120 chrX:18004354-18004474 1.0000 120 chr2R:14275561-14275681 1.0000 120 chrX:18494300-18494420 1.0000 120 chr2L:14011824-14011944 1.0000 120 chr2L:18966988-18967108 1.0000 120 chr3R:8577732-8577852 1.0000 120 chrX:947619-947739 1.0000 120 chr2R:22508114-22508234 1.0000 120 chrX:2591688-2591808 1.0000 120 chr2R:22387353-22387473 1.0000 120 chr3L:9468395-9468515 1.0000 120 chr2R:10123678-10123798 1.0000 120 chrX:13817563-13817683 1.0000 120 chr3L:7862852-7862972 1.0000 120 chrX:19453253-19453373 1.0000 120 chrX:16580113-16580233 1.0000 120 chr2L:937085-937205 1.0000 120 chr2L:17383880-17384000 1.0000 120 chr3R:7821703-7821823 1.0000 120 chr2L:2348645-2348765 1.0000 120 chr2R:21662531-21662651 1.0000 120 chr3L:16147915-16148035 1.0000 120 chr3R:25168373-25168493 1.0000 120 chr3R:20950361-20950481 1.0000 120 chr3R:26105948-26106068 1.0000 120 chr3R:11243248-11243368 1.0000 120 chr2R:21178792-21178912 1.0000 120 chr3R:15129109-15129229 1.0000 120 chr3L:21321925-21322045 1.0000 120 chr3L:3149233-3149353 1.0000 120 chr3R:16215092-16215212 1.0000 120 chrX:21375719-21375839 1.0000 120 chr3L:18020988-18021108 1.0000 120 chrX:10763053-10763173 1.0000 120 chr3R:5861402-5861522 1.0000 120 chr3R:7892707-7892827 1.0000 120 chrX:10184801-10184921 1.0000 120 chr2L:8461974-8462094 1.0000 120 chr3R:30004780-30004900 1.0000 120 chr2R:11602034-11602154 1.0000 120 chr3R:14657188-14657308 1.0000 120 chr2R:17085667-17085787 1.0000 120 chr3R:26117802-26117922 1.0000 120 chr3R:29997792-29997912 1.0000 120 chr2L:8894378-8894498 1.0000 120 chr2R:7879042-7879162 1.0000 120 chr2R:18994186-18994306 1.0000 120 chr3R:10024154-10024274 1.0000 120 chr2L:20808332-20808452 1.0000 120 chr3L:1139538-1139658 1.0000 120 chr2L:14141361-14141481 1.0000 120 chr2L:2730008-2730128 1.0000 120 chr2L:12542188-12542308 1.0000 120 chr2R:18435113-18435233 1.0000 120 chr3L:15588531-15588651 1.0000 120 chrX:8542120-8542240 1.0000 120 chr2L:2873488-2873608 1.0000 120 chrX:11081385-11081505 1.0000 120 chr3L:4521908-4522028 1.0000 120 chr3R:26280493-26280613 1.0000 120 chr2L:1633061-1633181 1.0000 120 chrX:21322721-21322841 1.0000 120 chrX:17330432-17330552 1.0000 120 chrX:18900153-18900273 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Meics/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Meics.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.322 C 0.176 G 0.179 T 0.324 Background letter frequencies (from file dataset with add-one prior applied): A 0.322 C 0.176 G 0.179 T 0.324 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTGACGAA MEME-1 width = 8 sites = 70 llr = 689 E-value = 5.3e-074 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGACGAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::28::a9 pos.-specific C :::1a::: probability G a:8::a:: matrix T :a:::::1 bits 2.5 * * 2.3 * ** 2.0 * ** 1.8 * * *** Relative 1.5 *** *** Entropy 1.3 *** *** (14.2 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGACGAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGACGAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:4521908-4522028 112 1.09e-05 GATTAGTTCC GTGACGAA G chr3R:29997792-29997912 52 1.09e-05 AATTACTTTA GTGACGAA AGCAACCACA chr3R:4398370-4398490 65 1.09e-05 TTTTCACGTT GTGACGAA GCGCACCCGG chr3R:18793148-18793268 17 1.09e-05 AAAAACTGAG GTGACGAA GAAAGAAAAA chr2R:10806311-10806431 4 1.09e-05 TGC GTGACGAA AAATGCGAAT chr2R:17637223-17637343 24 1.09e-05 GCCGCAGATG GTGACGAA GAAAATGATG chr2R:8725772-8725892 31 1.09e-05 ATCCAATGAG GTGACGAA AGCGTCCGTT chr3L:17547709-17547829 58 1.09e-05 TTCTAACTTC GTGACGAA TGATTTTATA chr3R:10133065-10133185 67 1.09e-05 CAAAAAGCGA GTGACGAA CGCGAAGAGC chrX:17495352-17495472 26 1.09e-05 TATCAACATA GTGACGAA GTGCACCGGG chrX:5329701-5329821 102 1.09e-05 TTTTGATATG GTGACGAA GAGACCATAT chrX:11086398-11086518 69 1.09e-05 tgaacgatga gtgacgaa gcgcaccgca chr3R:21399887-21400007 20 1.09e-05 ATTCTGTCTA GTGACGAA GAGCACTGAG chr3R:4421672-4421792 60 1.09e-05 AGTCCACGTA GTGACGAA GCGCTCTTGG chrX:5422287-5422407 93 1.09e-05 AGTTCCAAAC GTGACGAA AGACAACAAA chrX:6361330-6361450 29 1.09e-05 CGAAATATTG GTGACGAA TGCTGAAGCT chrX:12583534-12583654 95 1.09e-05 ACGGAATCTA GTGACGAA GTCCTTCCCC chr2R:7727698-7727818 30 1.09e-05 TGAGAAAGCA GTGACGAA AGCCACAATC chr2R:12954359-12954479 69 1.09e-05 AGACCACGTA GTGACGAA TCGCACAAGC chr2L:1218646-1218766 63 1.09e-05 TAGCGAGCTA GTGACGAA TTTATTGAGA chr3L:17547507-17547627 13 1.09e-05 AGTCCACGTA GTGACGAA GCAAACCAAG chrX:14850210-14850330 23 1.09e-05 TAGTCACGTA GTGACGAA TGTGATTTAG chr3L:14776353-14776473 25 1.09e-05 AGTTTACATA GTGACGAA GCGCACCATA chrX:19586989-19587109 50 1.09e-05 CATCTGCGTA GTGACGAA ATGCTATGTT chr3R:10034984-10035104 30 1.09e-05 gaatgaATTG GTGACGAA TGCCGGTCGA chr2R:6206150-6206270 62 1.09e-05 CGTTGGCGTA GTGACGAA GCGAGTGTGC chrX:5891787-5891907 35 1.09e-05 AGTTTACGTA GTGACGAA GCGCACCACG chr3R:4179023-4179143 46 1.09e-05 AGTTCACATA GTGACGAA GCGCACTAAG chr3L:20197352-20197472 61 1.09e-05 AATTAGTTTC GTGACGAA GGTCGCTCTT chr2L:21828968-21829088 62 1.09e-05 gcagAGGCTA GTGACGAA GGAACCCGGC chr3R:8645976-8646096 95 1.09e-05 CGCTGAATTT GTGACGAA TTCCACCCAC chr2R:12507546-12507666 86 1.09e-05 AGTTTACGTA GTGACGAA TCAGACACCC chr3R:29479427-29479547 45 1.09e-05 GAAGCGACAA GTGACGAA AGACATAGCC chr2L:3301196-3301316 107 1.09e-05 TGGTTGGCAG GTGACGAA ACGGGT chr2R:8158598-8158718 32 1.09e-05 CGTTCACGTA GTGACGAA GCGCACCCTG chr3R:30870616-30870736 21 1.09e-05 ATTCACTTTG GTGACGAA TTCTCCTCAT chr3R:9254897-9255017 42 1.09e-05 AATAAGTATT GTGACGAA GTCATTTCTA chr3L:6619196-6619316 34 1.09e-05 ATTTATTCTA GTGACGAA TGCGGTTGAA chrX:3175614-3175734 49 1.09e-05 TGGCGGGTAG GTGACGAA TTCTCCTCGC chrX:14923390-14923510 110 1.69e-05 GAAGAAAGAA GTGCCGAA GAA chr2L:8305612-8305732 55 1.69e-05 GGGCTGCATA GTGCCGAA TCATTTCGCA chr3R:11640090-11640210 46 1.69e-05 GGGGAGTGGT GTGCCGAA ACACGCTCCT chr2R:9515902-9516022 33 1.69e-05 TGAGAGCTTA GTGCCGAA AGCCGATTGA chr2L:8931323-8931443 56 1.69e-05 GAACAGCATA GTGCCGAA AGCGCCGATG chr3R:16353336-16353456 17 1.69e-05 GTGAGGGTGC GTGCCGAA GATCACATCA chr2R:10735512-10735632 33 1.69e-05 GATTGGAGAG GTGCCGAA AGCGGCGACG chr2L:1008130-1008250 68 1.69e-05 GATACAAATA GTGCCGAA TAGTGCTTCT chr2R:8150334-8150454 73 3.65e-05 TTTTTACATA GTAACGAA ATTGATAATG chr3L:20471399-20471519 37 3.65e-05 AAACTATAAG GTAACGAA GGCAAAACGG chr3R:5081612-5081732 34 3.65e-05 AATTTGTCGA GTAACGAA AGCACTCTAG chr2L:11845263-11845383 49 3.65e-05 ATACCAATTT GTAACGAA AGTGCCCTAA chr3R:11178431-11178551 15 3.65e-05 GATAACCAAG GTAACGAA ACGCACCGCG chr3L:11609647-11609767 94 3.65e-05 GATGTAATTT GTAACGAA TGCTGCTAAA chr2R:19310922-19311042 30 3.65e-05 TATCTATATA GTAACGAA AGCTACTATG chr2L:10237721-10237841 34 3.65e-05 TATTTGAATA GTAACGAA TTCGCGGCAC chr2L:6561669-6561789 46 3.65e-05 CATGTGATTA GTAACGAA ATTTTAAATA chr2R:23748321-23748441 71 3.65e-05 TACTATCGTA GTAACGAA TTTCCTAAAG chr2R:7457796-7457916 54 4.26e-05 GTCCGGAATA GTGACGAG ATATCTATCG chr3L:8912566-8912686 80 4.26e-05 GTTGAGTCGA GTGACGAG CGCAGCATTT chr2L:4811925-4812045 41 5.36e-05 TGTTGGCCGC GTGACGAT TGCCGCGTGA chr2R:6646178-6646298 45 5.36e-05 AGTTTACGTA GTGACGAT GAGCACCGAA chr3R:15975573-15975693 13 5.36e-05 ATTACATTTT GTGACGAT TAATTTAAAA chr2L:19550594-19550714 16 5.36e-05 TGTCCACGTA GTGACGAT GAGCACCTAA chr3R:20988086-20988206 39 6.43e-05 GTTTAAACTA GTACCGAA AGGCATATAC chr2L:3791683-3791803 49 6.43e-05 CAAAAGCTTC GTACCGAA GTTCCCTCAT chr3L:1188933-1189053 85 8.46e-05 TTCCAGACTA GTGTCGAA TGTATGGATG chr2L:20084558-20084678 53 1.06e-04 TTGACCGCGT GTGAGGAA GTGGTGGACT chr2R:10252930-10253050 72 1.06e-04 TAACTCCCTG GTGACCAA GTTGCTGCTG chr2R:11641964-11642084 22 1.17e-04 TTATCTGTGT GTAACGAG GGAATTGCTG chr3R:26555988-26556108 52 1.57e-04 ACCTATATTT GTGACTAA ATTTATCTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGACGAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:4521908-4522028 1.1e-05 111_[+1]_1 chr3R:29997792-29997912 1.1e-05 51_[+1]_61 chr3R:4398370-4398490 1.1e-05 64_[+1]_48 chr3R:18793148-18793268 1.1e-05 16_[+1]_96 chr2R:10806311-10806431 1.1e-05 3_[+1]_109 chr2R:17637223-17637343 1.1e-05 23_[+1]_89 chr2R:8725772-8725892 1.1e-05 30_[+1]_82 chr3L:17547709-17547829 1.1e-05 57_[+1]_55 chr3R:10133065-10133185 1.1e-05 66_[+1]_46 chrX:17495352-17495472 1.1e-05 25_[+1]_87 chrX:5329701-5329821 1.1e-05 101_[+1]_11 chrX:11086398-11086518 1.1e-05 68_[+1]_44 chr3R:21399887-21400007 1.1e-05 19_[+1]_93 chr3R:4421672-4421792 1.1e-05 59_[+1]_53 chrX:5422287-5422407 1.1e-05 92_[+1]_20 chrX:6361330-6361450 1.1e-05 28_[+1]_84 chrX:12583534-12583654 1.1e-05 94_[+1]_18 chr2R:7727698-7727818 1.1e-05 29_[+1]_83 chr2R:12954359-12954479 1.1e-05 68_[+1]_44 chr2L:1218646-1218766 1.1e-05 62_[+1]_50 chr3L:17547507-17547627 1.1e-05 12_[+1]_100 chrX:14850210-14850330 1.1e-05 22_[+1]_90 chr3L:14776353-14776473 1.1e-05 24_[+1]_88 chrX:19586989-19587109 1.1e-05 49_[+1]_63 chr3R:10034984-10035104 1.1e-05 29_[+1]_83 chr2R:6206150-6206270 1.1e-05 61_[+1]_51 chrX:5891787-5891907 1.1e-05 34_[+1]_78 chr3R:4179023-4179143 1.1e-05 45_[+1]_67 chr3L:20197352-20197472 1.1e-05 60_[+1]_52 chr2L:21828968-21829088 1.1e-05 61_[+1]_51 chr3R:8645976-8646096 1.1e-05 94_[+1]_18 chr2R:12507546-12507666 1.1e-05 85_[+1]_27 chr3R:29479427-29479547 1.1e-05 44_[+1]_68 chr2L:3301196-3301316 1.1e-05 106_[+1]_6 chr2R:8158598-8158718 1.1e-05 31_[+1]_81 chr3R:30870616-30870736 1.1e-05 20_[+1]_92 chr3R:9254897-9255017 1.1e-05 41_[+1]_71 chr3L:6619196-6619316 1.1e-05 33_[+1]_79 chrX:3175614-3175734 1.1e-05 48_[+1]_64 chrX:14923390-14923510 1.7e-05 109_[+1]_3 chr2L:8305612-8305732 1.7e-05 54_[+1]_58 chr3R:11640090-11640210 1.7e-05 45_[+1]_67 chr2R:9515902-9516022 1.7e-05 32_[+1]_80 chr2L:8931323-8931443 1.7e-05 55_[+1]_57 chr3R:16353336-16353456 1.7e-05 16_[+1]_96 chr2R:10735512-10735632 1.7e-05 32_[+1]_80 chr2L:1008130-1008250 1.7e-05 67_[+1]_45 chr2R:8150334-8150454 3.7e-05 72_[+1]_40 chr3L:20471399-20471519 3.7e-05 36_[+1]_76 chr3R:5081612-5081732 3.7e-05 33_[+1]_79 chr2L:11845263-11845383 3.7e-05 48_[+1]_64 chr3R:11178431-11178551 3.7e-05 14_[+1]_98 chr3L:11609647-11609767 3.7e-05 93_[+1]_19 chr2R:19310922-19311042 3.7e-05 29_[+1]_83 chr2L:10237721-10237841 3.7e-05 33_[+1]_79 chr2L:6561669-6561789 3.7e-05 45_[+1]_67 chr2R:23748321-23748441 3.7e-05 70_[+1]_42 chr2R:7457796-7457916 4.3e-05 53_[+1]_59 chr3L:8912566-8912686 4.3e-05 79_[+1]_33 chr2L:4811925-4812045 5.4e-05 40_[+1]_72 chr2R:6646178-6646298 5.4e-05 44_[+1]_68 chr3R:15975573-15975693 5.4e-05 12_[+1]_100 chr2L:19550594-19550714 5.4e-05 15_[+1]_97 chr3R:20988086-20988206 6.4e-05 38_[+1]_74 chr2L:3791683-3791803 6.4e-05 48_[+1]_64 chr3L:1188933-1189053 8.5e-05 84_[+1]_28 chr2L:20084558-20084678 0.00011 52_[+1]_60 chr2R:10252930-10253050 0.00011 71_[+1]_41 chr2R:11641964-11642084 0.00012 21_[+1]_91 chr3R:26555988-26556108 0.00016 51_[+1]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGACGAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGACGAA width=8 seqs=70 chr3L:4521908-4522028 ( 112) GTGACGAA 1 chr3R:29997792-29997912 ( 52) GTGACGAA 1 chr3R:4398370-4398490 ( 65) GTGACGAA 1 chr3R:18793148-18793268 ( 17) GTGACGAA 1 chr2R:10806311-10806431 ( 4) GTGACGAA 1 chr2R:17637223-17637343 ( 24) GTGACGAA 1 chr2R:8725772-8725892 ( 31) GTGACGAA 1 chr3L:17547709-17547829 ( 58) GTGACGAA 1 chr3R:10133065-10133185 ( 67) GTGACGAA 1 chrX:17495352-17495472 ( 26) GTGACGAA 1 chrX:5329701-5329821 ( 102) GTGACGAA 1 chrX:11086398-11086518 ( 69) GTGACGAA 1 chr3R:21399887-21400007 ( 20) GTGACGAA 1 chr3R:4421672-4421792 ( 60) GTGACGAA 1 chrX:5422287-5422407 ( 93) GTGACGAA 1 chrX:6361330-6361450 ( 29) GTGACGAA 1 chrX:12583534-12583654 ( 95) GTGACGAA 1 chr2R:7727698-7727818 ( 30) GTGACGAA 1 chr2R:12954359-12954479 ( 69) GTGACGAA 1 chr2L:1218646-1218766 ( 63) GTGACGAA 1 chr3L:17547507-17547627 ( 13) GTGACGAA 1 chrX:14850210-14850330 ( 23) GTGACGAA 1 chr3L:14776353-14776473 ( 25) GTGACGAA 1 chrX:19586989-19587109 ( 50) GTGACGAA 1 chr3R:10034984-10035104 ( 30) GTGACGAA 1 chr2R:6206150-6206270 ( 62) GTGACGAA 1 chrX:5891787-5891907 ( 35) GTGACGAA 1 chr3R:4179023-4179143 ( 46) GTGACGAA 1 chr3L:20197352-20197472 ( 61) GTGACGAA 1 chr2L:21828968-21829088 ( 62) GTGACGAA 1 chr3R:8645976-8646096 ( 95) GTGACGAA 1 chr2R:12507546-12507666 ( 86) GTGACGAA 1 chr3R:29479427-29479547 ( 45) GTGACGAA 1 chr2L:3301196-3301316 ( 107) GTGACGAA 1 chr2R:8158598-8158718 ( 32) GTGACGAA 1 chr3R:30870616-30870736 ( 21) GTGACGAA 1 chr3R:9254897-9255017 ( 42) GTGACGAA 1 chr3L:6619196-6619316 ( 34) GTGACGAA 1 chrX:3175614-3175734 ( 49) GTGACGAA 1 chrX:14923390-14923510 ( 110) GTGCCGAA 1 chr2L:8305612-8305732 ( 55) GTGCCGAA 1 chr3R:11640090-11640210 ( 46) GTGCCGAA 1 chr2R:9515902-9516022 ( 33) GTGCCGAA 1 chr2L:8931323-8931443 ( 56) GTGCCGAA 1 chr3R:16353336-16353456 ( 17) GTGCCGAA 1 chr2R:10735512-10735632 ( 33) GTGCCGAA 1 chr2L:1008130-1008250 ( 68) GTGCCGAA 1 chr2R:8150334-8150454 ( 73) GTAACGAA 1 chr3L:20471399-20471519 ( 37) GTAACGAA 1 chr3R:5081612-5081732 ( 34) GTAACGAA 1 chr2L:11845263-11845383 ( 49) GTAACGAA 1 chr3R:11178431-11178551 ( 15) GTAACGAA 1 chr3L:11609647-11609767 ( 94) GTAACGAA 1 chr2R:19310922-19311042 ( 30) GTAACGAA 1 chr2L:10237721-10237841 ( 34) GTAACGAA 1 chr2L:6561669-6561789 ( 46) GTAACGAA 1 chr2R:23748321-23748441 ( 71) GTAACGAA 1 chr2R:7457796-7457916 ( 54) GTGACGAG 1 chr3L:8912566-8912686 ( 80) GTGACGAG 1 chr2L:4811925-4812045 ( 41) GTGACGAT 1 chr2R:6646178-6646298 ( 45) GTGACGAT 1 chr3R:15975573-15975693 ( 13) GTGACGAT 1 chr2L:19550594-19550714 ( 16) GTGACGAT 1 chr3R:20988086-20988206 ( 39) GTACCGAA 1 chr2L:3791683-3791803 ( 49) GTACCGAA 1 chr3L:1188933-1189053 ( 85) GTGTCGAA 1 chr2L:20084558-20084678 ( 53) GTGAGGAA 1 chr2R:10252930-10253050 ( 72) GTGACCAA 1 chr2R:11641964-11642084 ( 22) GTAACGAG 1 chr3R:26555988-26556108 ( 52) GTGACTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGACGAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.47651 E= 5.3e-074 -1277 -1277 248 -1277 -1277 -1277 -1277 163 -79 -1277 218 -1277 139 -30 -1277 -450 -1277 249 -365 -1277 -1277 -362 244 -450 164 -1277 -1277 -1277 148 -1277 -206 -250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGACGAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 5.3e-074 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.185714 0.000000 0.814286 0.000000 0.842857 0.142857 0.000000 0.014286 0.000000 0.985714 0.014286 0.000000 0.000000 0.014286 0.971429 0.014286 1.000000 0.000000 0.000000 0.000000 0.900000 0.000000 0.042857 0.057143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGACGAA MEME-1 regular expression -------------------------------------------------------------------------------- GTGACGAA -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCGTYAC MEME-2 width = 8 sites = 51 llr = 509 E-value = 5.5e-045 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCGTYAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C ::a::6:a probability G :::a1::: matrix T aa::93:: bits 2.5 ** 2.3 ** * 2.0 ** * 1.8 ** ** Relative 1.5 **** ** Entropy 1.3 ******** (14.4 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTCGTCAC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCGTYAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:20276736-20276856 66 1.07e-05 ATGTATTTGT TTCGTCAC TAATGAAAAT chrX:14923390-14923510 31 1.07e-05 CCAAGCGATT TTCGTCAC AATTCCCTTG chr3L:11074650-11074770 67 1.07e-05 GACAATGAAA TTCGTCAC TAAGTAGACG chr3R:9701302-9701422 43 1.07e-05 AGAGCGGGCT TTCGTCAC CAACTTGGAC chrX:12730552-12730672 68 1.07e-05 ATAGGTGCGC TTCGTCAC TATGTGACAC chr3L:7368744-7368864 26 1.07e-05 TTGCAATGCG TTCGTCAC CACTTTAGTT chrX:18901084-18901204 104 1.07e-05 TGTGGTGCGC TTCGTCAC TACGTAGAC chrX:19261687-19261807 40 1.07e-05 ACAATTAATT TTCGTCAC AAAGTAACAA chr2R:12960178-12960298 85 1.07e-05 CGTTACTGCC TTCGTCAC TGCGGTTTCT chr2L:6077445-6077565 70 1.07e-05 TCTGGTGCGC TTCGTCAC TACGTGGGCG chr2L:12454918-12455038 8 1.07e-05 CGTGGCA TTCGTCAC CCTCCCAAAT chr2R:4618862-4618982 31 1.07e-05 tgttCTTGAT TTCGTCAC TAATTATTAA chr3R:16353336-16353456 77 1.07e-05 TTTTTATAGT TTCGTCAC AAACTGGCGG chr2L:22133106-22133226 48 1.07e-05 TCTAGTGCGC TTCGTCAC TATCGTCCAC chr2R:11641964-11642084 65 1.07e-05 AGGGGGGGCG TTCGTCAC GACATTCTTT chr4:695062-695182 26 1.07e-05 AAAACCATTT TTCGTCAC AAATCGGCAC chr2R:10735512-10735632 107 1.07e-05 TACATCGGGC TTCGTCAC TCGACT chr3L:1534232-1534352 109 1.07e-05 AACCGATGCT TTCGTCAC TAGA chrX:15520831-15520951 66 1.07e-05 TACAGTGCTG TTCGTCAC TACGTGGACT chr3R:18738232-18738352 49 1.07e-05 TGAGTTTGCG TTCGTCAC TATTCCCGAT chrX:2638800-2638920 109 1.07e-05 AGAGGGGGCC TTCGTCAC CAGC chr3R:8645976-8646096 59 1.07e-05 GCGCTGACAC TTCGTCAC TAAACTTCCA chr3R:29479427-29479547 77 1.07e-05 GTGTGCTCGT TTCGTCAC AACAAGAGCA chr2L:3301196-3301316 60 1.07e-05 TGTTGCGGCT TTCGTCAC TATGCTGGCT chr3R:18895402-18895522 90 1.07e-05 TGAGCTGCGC TTCGTCAC TACATGTGAT chrX:11561606-11561726 64 1.07e-05 TAGGGAAGCA TTCGTCAC TAGCTGAAAA chr2R:7927091-7927211 107 1.07e-05 AAAATCATTT TTCGTCAC AAAAGT chr3R:6374148-6374268 30 1.66e-05 TTAGTAAATT TTCGGCAC GAATGATAAT chrX:16091553-16091673 76 1.66e-05 GTTGGTCTTA TTCGGCAC TACGCACGAA chr3L:11596762-11596882 54 1.66e-05 GAGGGGAGCC TTCGGCAC TAAGCCGGCG chr3L:3149233-3149353 73 3.63e-05 GCTATACGAT TTCGTTAC GTTCTCGGTT chr3R:31020892-31021012 85 3.63e-05 AAATGTATTT TTCGTTAC ACTTGTTTTG chr2R:17637223-17637343 90 3.63e-05 CCGCGACATT TTCGTTAC TCCTCCGAAT chr3R:25652367-25652487 80 3.63e-05 GGATGGAGCT TTCGTTAC TAACTACTTT chr3L:15072340-15072460 89 3.63e-05 TTTCAAGCCG TTCGTTAC TATTTGTAAT chr3R:18380161-18380281 44 3.63e-05 GTGAGGTGCG TTCGTTAC CTCGGTGAAA chr2L:20428748-20428868 35 3.63e-05 GCTGTTAAGT TTCGTTAC TAAACTTTAG chrX:18930085-18930205 74 3.63e-05 GTTAGTAGAT TTCGTTAC CAAGATTATT chrX:20156086-20156206 42 3.63e-05 TCTAGTGCGC TTCGTTAC TACGTTATTC chr2L:20082288-20082408 56 3.63e-05 GGGGCAGGTT TTCGTTAC TTGATTTTTT chr2L:16801924-16802044 81 3.63e-05 CGCAGAGCGA TTCGTTAC AACGCAAAGT chr2R:11340159-11340279 65 3.63e-05 TGCATGGTCA TTCGTTAC TACGAGCGAT chr2R:23569815-23569935 40 3.63e-05 AAAGTCGCGT TTCGTTAC CAATCTAATT chr4:69625-69745 65 5.29e-05 CAAAGCTGCG TTCGGTAC TCGTTGACTG chrX:9594562-9594682 62 5.29e-05 CTACGGCTAC TTCGGTAC TACGTGTATT chr2L:3323422-3323542 64 5.29e-05 AGAGGTAGCA TTCGGTAC ACGTGTAACT chr3R:18468960-18469080 85 5.29e-05 TTGAGTGACT TTCGGTAC GAAGCTGACC chr2R:24306059-24306179 86 5.29e-05 TAAGGTAGGT CTCGTCAC TAGTCTCTTT chr2L:16850558-16850678 63 5.29e-05 CATCGTGTGC CTCGTCAC AAAGTGGACG chr3L:17547709-17547829 11 6.38e-05 CAGGAAAAAT TTCGTGAC GCTCGAATTT chr2R:21091935-21092055 104 8.86e-05 GACCATTTTT TTCGTCAG TGTACGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCGTYAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20276736-20276856 1.1e-05 65_[+2]_47 chrX:14923390-14923510 1.1e-05 30_[+2]_82 chr3L:11074650-11074770 1.1e-05 66_[+2]_46 chr3R:9701302-9701422 1.1e-05 42_[+2]_70 chrX:12730552-12730672 1.1e-05 67_[+2]_45 chr3L:7368744-7368864 1.1e-05 25_[+2]_87 chrX:18901084-18901204 1.1e-05 103_[+2]_9 chrX:19261687-19261807 1.1e-05 39_[+2]_73 chr2R:12960178-12960298 1.1e-05 84_[+2]_28 chr2L:6077445-6077565 1.1e-05 69_[+2]_43 chr2L:12454918-12455038 1.1e-05 7_[+2]_105 chr2R:4618862-4618982 1.1e-05 30_[+2]_82 chr3R:16353336-16353456 1.1e-05 76_[+2]_36 chr2L:22133106-22133226 1.1e-05 47_[+2]_65 chr2R:11641964-11642084 1.1e-05 64_[+2]_48 chr4:695062-695182 1.1e-05 25_[+2]_87 chr2R:10735512-10735632 1.1e-05 106_[+2]_6 chr3L:1534232-1534352 1.1e-05 108_[+2]_4 chrX:15520831-15520951 1.1e-05 65_[+2]_47 chr3R:18738232-18738352 1.1e-05 48_[+2]_64 chrX:2638800-2638920 1.1e-05 108_[+2]_4 chr3R:8645976-8646096 1.1e-05 58_[+2]_54 chr3R:29479427-29479547 1.1e-05 76_[+2]_36 chr2L:3301196-3301316 1.1e-05 59_[+2]_53 chr3R:18895402-18895522 1.1e-05 89_[+2]_23 chrX:11561606-11561726 1.1e-05 63_[+2]_49 chr2R:7927091-7927211 1.1e-05 106_[+2]_6 chr3R:6374148-6374268 1.7e-05 29_[+2]_83 chrX:16091553-16091673 1.7e-05 75_[+2]_37 chr3L:11596762-11596882 1.7e-05 53_[+2]_59 chr3L:3149233-3149353 3.6e-05 72_[+2]_40 chr3R:31020892-31021012 3.6e-05 84_[+2]_28 chr2R:17637223-17637343 3.6e-05 89_[+2]_23 chr3R:25652367-25652487 3.6e-05 79_[+2]_33 chr3L:15072340-15072460 3.6e-05 88_[+2]_24 chr3R:18380161-18380281 3.6e-05 43_[+2]_69 chr2L:20428748-20428868 3.6e-05 34_[+2]_78 chrX:18930085-18930205 3.6e-05 73_[+2]_39 chrX:20156086-20156206 3.6e-05 41_[+2]_71 chr2L:20082288-20082408 3.6e-05 55_[+2]_57 chr2L:16801924-16802044 3.6e-05 80_[+2]_32 chr2R:11340159-11340279 3.6e-05 64_[+2]_48 chr2R:23569815-23569935 3.6e-05 39_[+2]_73 chr4:69625-69745 5.3e-05 64_[+2]_48 chrX:9594562-9594682 5.3e-05 61_[+2]_51 chr2L:3323422-3323542 5.3e-05 63_[+2]_49 chr3R:18468960-18469080 5.3e-05 84_[+2]_28 chr2R:24306059-24306179 5.3e-05 85_[+2]_27 chr2L:16850558-16850678 5.3e-05 62_[+2]_50 chr3L:17547709-17547829 6.4e-05 10_[+2]_102 chr2R:21091935-21092055 8.9e-05 103_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCGTYAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCGTYAC width=8 seqs=51 chr3L:20276736-20276856 ( 66) TTCGTCAC 1 chrX:14923390-14923510 ( 31) TTCGTCAC 1 chr3L:11074650-11074770 ( 67) TTCGTCAC 1 chr3R:9701302-9701422 ( 43) TTCGTCAC 1 chrX:12730552-12730672 ( 68) TTCGTCAC 1 chr3L:7368744-7368864 ( 26) TTCGTCAC 1 chrX:18901084-18901204 ( 104) TTCGTCAC 1 chrX:19261687-19261807 ( 40) TTCGTCAC 1 chr2R:12960178-12960298 ( 85) TTCGTCAC 1 chr2L:6077445-6077565 ( 70) TTCGTCAC 1 chr2L:12454918-12455038 ( 8) TTCGTCAC 1 chr2R:4618862-4618982 ( 31) TTCGTCAC 1 chr3R:16353336-16353456 ( 77) TTCGTCAC 1 chr2L:22133106-22133226 ( 48) TTCGTCAC 1 chr2R:11641964-11642084 ( 65) TTCGTCAC 1 chr4:695062-695182 ( 26) TTCGTCAC 1 chr2R:10735512-10735632 ( 107) TTCGTCAC 1 chr3L:1534232-1534352 ( 109) TTCGTCAC 1 chrX:15520831-15520951 ( 66) TTCGTCAC 1 chr3R:18738232-18738352 ( 49) TTCGTCAC 1 chrX:2638800-2638920 ( 109) TTCGTCAC 1 chr3R:8645976-8646096 ( 59) TTCGTCAC 1 chr3R:29479427-29479547 ( 77) TTCGTCAC 1 chr2L:3301196-3301316 ( 60) TTCGTCAC 1 chr3R:18895402-18895522 ( 90) TTCGTCAC 1 chrX:11561606-11561726 ( 64) TTCGTCAC 1 chr2R:7927091-7927211 ( 107) TTCGTCAC 1 chr3R:6374148-6374268 ( 30) TTCGGCAC 1 chrX:16091553-16091673 ( 76) TTCGGCAC 1 chr3L:11596762-11596882 ( 54) TTCGGCAC 1 chr3L:3149233-3149353 ( 73) TTCGTTAC 1 chr3R:31020892-31021012 ( 85) TTCGTTAC 1 chr2R:17637223-17637343 ( 90) TTCGTTAC 1 chr3R:25652367-25652487 ( 80) TTCGTTAC 1 chr3L:15072340-15072460 ( 89) TTCGTTAC 1 chr3R:18380161-18380281 ( 44) TTCGTTAC 1 chr2L:20428748-20428868 ( 35) TTCGTTAC 1 chrX:18930085-18930205 ( 74) TTCGTTAC 1 chrX:20156086-20156206 ( 42) TTCGTTAC 1 chr2L:20082288-20082408 ( 56) TTCGTTAC 1 chr2L:16801924-16802044 ( 81) TTCGTTAC 1 chr2R:11340159-11340279 ( 65) TTCGTTAC 1 chr2R:23569815-23569935 ( 40) TTCGTTAC 1 chr4:69625-69745 ( 65) TTCGGTAC 1 chrX:9594562-9594682 ( 62) TTCGGTAC 1 chr2L:3323422-3323542 ( 64) TTCGGTAC 1 chr3R:18468960-18469080 ( 85) TTCGGTAC 1 chr2R:24306059-24306179 ( 86) CTCGTCAC 1 chr2L:16850558-16850678 ( 63) CTCGTCAC 1 chr3L:17547709-17547829 ( 11) TTCGTGAC 1 chr2R:21091935-21092055 ( 104) TTCGTCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCGTYAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.62225 E= 5.5e-045 -1232 -216 -1232 157 -1232 -1232 -1232 163 -1232 251 -1232 -1232 -1232 -1232 248 -1232 -1232 -1232 -38 141 -1232 188 -319 4 164 -1232 -1232 -1232 -1232 248 -319 -1232 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCGTYAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 5.5e-045 0.000000 0.039216 0.000000 0.960784 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.137255 0.862745 0.000000 0.647059 0.019608 0.333333 1.000000 0.000000 0.000000 0.000000 0.000000 0.980392 0.019608 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCGTYAC MEME-2 regular expression -------------------------------------------------------------------------------- TTCGT[CT]AC -------------------------------------------------------------------------------- Time 13.44 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCACMGC MEME-3 width = 8 sites = 12 llr = 127 E-value = 3.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCACMGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::8:5:: pos.-specific C 9:a283:a probability G 1a::22a: matrix T :::::1:: bits 2.5 ** ** 2.3 ** ** 2.0 *** ** 1.8 *** * ** Relative 1.5 *** * ** Entropy 1.3 ***** ** (15.3 bits) 1.0 ***** ** 0.8 ***** ** 0.5 ***** ** 0.3 ******** 0.0 -------- Multilevel CGCACAGC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCACMGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7727698-7727818 47 3.19e-06 AAGCCACAAT CGCACAGC TACAATCAGA chr3R:24544439-24544559 88 4.93e-06 TGTGTAAACA CGCACCGC AACAGTTGTT chrX:11086398-11086518 78 4.93e-06 agtgacgaag cgcaccgc aaccgaaccg chr3R:11178431-11178551 24 4.93e-06 GGTAACGAAA CGCACCGC GCATAAAAAC chr2R:12960178-12960298 46 6.70e-06 CTATGTAAAC CGCACGGC TCACTGGCTG chr2L:20428748-20428868 67 6.70e-06 TTAAAAATAC CGCACGGC TTACGATGTT chr2L:2730008-2730128 77 8.44e-06 CTAGTCGAGC CGCCCAGC GTTGTACTTA chrX:3175614-3175734 64 8.44e-06 GAATTCTCCT CGCCCAGC GGGGCGTTAC chr2R:12507546-12507666 42 1.36e-05 TATCTCCACT CGCAGAGC TTGTAACACG chr2L:16801924-16802044 71 1.36e-05 ACTCTTTAGA CGCAGAGC GATTCGTTAC chrX:14923390-14923510 13 1.86e-05 CGCATGCGTG CGCACTGC CCAAGCGATT chr2L:10237721-10237841 47 2.36e-05 ACGAATTCGC GGCACAGC ATAACTGAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCACMGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7727698-7727818 3.2e-06 46_[+3]_66 chr3R:24544439-24544559 4.9e-06 87_[+3]_25 chrX:11086398-11086518 4.9e-06 77_[+3]_35 chr3R:11178431-11178551 4.9e-06 23_[+3]_89 chr2R:12960178-12960298 6.7e-06 45_[+3]_67 chr2L:20428748-20428868 6.7e-06 66_[+3]_46 chr2L:2730008-2730128 8.4e-06 76_[+3]_36 chrX:3175614-3175734 8.4e-06 63_[+3]_49 chr2R:12507546-12507666 1.4e-05 41_[+3]_71 chr2L:16801924-16802044 1.4e-05 70_[+3]_42 chrX:14923390-14923510 1.9e-05 12_[+3]_100 chr2L:10237721-10237841 2.4e-05 46_[+3]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCACMGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCACMGC width=8 seqs=12 chr2R:7727698-7727818 ( 47) CGCACAGC 1 chr3R:24544439-24544559 ( 88) CGCACCGC 1 chrX:11086398-11086518 ( 78) CGCACCGC 1 chr3R:11178431-11178551 ( 24) CGCACCGC 1 chr2R:12960178-12960298 ( 46) CGCACGGC 1 chr2L:20428748-20428868 ( 67) CGCACGGC 1 chr2L:2730008-2730128 ( 77) CGCCCAGC 1 chrX:3175614-3175734 ( 64) CGCCCAGC 1 chr2R:12507546-12507666 ( 42) CGCAGAGC 1 chr2L:16801924-16802044 ( 71) CGCAGAGC 1 chrX:14923390-14923510 ( 13) CGCACTGC 1 chr2L:10237721-10237841 ( 47) GGCACAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCACMGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3003 E= 3.0e+001 -1023 238 -110 -1023 -1023 -1023 248 -1023 -1023 251 -1023 -1023 137 -7 -1023 -1023 -1023 225 -10 -1023 64 51 -10 -195 -1023 -1023 248 -1023 -1023 251 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCACMGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 3.0e+001 0.000000 0.916667 0.083333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.500000 0.250000 0.166667 0.083333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCACMGC MEME-3 regular expression -------------------------------------------------------------------------------- CGCAC[AC]GC -------------------------------------------------------------------------------- Time 19.47 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGBGCG MEME-4 width = 8 sites = 16 llr = 157 E-value = 2.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGBGCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1:::::1 pos.-specific C 11:13:9: probability G 91a94a19 matrix T :7::3::: bits 2.5 * * 2.3 * ** * 2.0 * ** ** 1.8 * ** *** Relative 1.5 * ** *** Entropy 1.3 * ** *** (14.2 bits) 1.0 * ** *** 0.8 * ****** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGGGGCG consensus T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGBGCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2730008-2730128 12 3.72e-06 GCGCGATACA GTGGCGCG TGTATCTATA chr2R:14767308-14767428 107 3.72e-06 GCCAGCTGAA GTGGCGCG CTTCGT chr2R:6646178-6646298 66 7.12e-06 CACCGAAAGT GTGGTGCG CCAGGGAACT chrX:18901084-18901204 95 7.12e-06 TTTAGCGCCT GTGGTGCG CTTCGTCACT chr2R:10735512-10735632 16 7.12e-06 AGAGCGGGGG GTGGTGCG ATTGGAGAGG chr3R:21214907-21215027 39 7.12e-06 AGACACTTTC GTGGTGCG ATTCGTAACT chr3L:11596762-11596882 31 9.17e-06 TTATAAAAAA GGGGGGCG GTGTTGAGGG chrX:5422287-5422407 47 9.17e-06 CTGGCTGGCA GCGGGGCG ACGAACTTAA chr2R:11641964-11642084 57 9.17e-06 AATGGTTAAG GGGGGGCG TTCGTCACGA chrX:21375719-21375839 28 1.68e-05 CGTGGGGTTT GTGGGGGG GCAAAAAACA chr2R:11633054-11633174 77 2.39e-05 TTTCAATTTA GTGGGGCA AGAGCAAATT chrX:3175614-3175734 38 2.39e-05 TCCGGACTGC GTGGCGGG TAGGTGACGA chr2L:10237721-10237841 15 2.76e-05 ATTGTCCACA GTGCGGCG ATATTTGAAT chr3R:22547644-22547764 69 4.19e-05 GGAGTCAACA CTGGCGCG AAAAACTATT chr3R:18380161-18380281 36 4.53e-05 TGGATTGGGT GAGGTGCG TTCGTTACCT chr2L:20082288-20082408 44 6.39e-05 CGTTGGTCAA GCGGGGCA GGTTTTCGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGBGCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2730008-2730128 3.7e-06 11_[+4]_101 chr2R:14767308-14767428 3.7e-06 106_[+4]_6 chr2R:6646178-6646298 7.1e-06 65_[+4]_47 chrX:18901084-18901204 7.1e-06 94_[+4]_18 chr2R:10735512-10735632 7.1e-06 15_[+4]_97 chr3R:21214907-21215027 7.1e-06 38_[+4]_74 chr3L:11596762-11596882 9.2e-06 30_[+4]_82 chrX:5422287-5422407 9.2e-06 46_[+4]_66 chr2R:11641964-11642084 9.2e-06 56_[+4]_56 chrX:21375719-21375839 1.7e-05 27_[+4]_85 chr2R:11633054-11633174 2.4e-05 76_[+4]_36 chrX:3175614-3175734 2.4e-05 37_[+4]_75 chr2L:10237721-10237841 2.8e-05 14_[+4]_98 chr3R:22547644-22547764 4.2e-05 68_[+4]_44 chr3R:18380161-18380281 4.5e-05 35_[+4]_77 chr2L:20082288-20082408 6.4e-05 43_[+4]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGBGCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGBGCG width=8 seqs=16 chr2L:2730008-2730128 ( 12) GTGGCGCG 1 chr2R:14767308-14767428 ( 107) GTGGCGCG 1 chr2R:6646178-6646298 ( 66) GTGGTGCG 1 chrX:18901084-18901204 ( 95) GTGGTGCG 1 chr2R:10735512-10735632 ( 16) GTGGTGCG 1 chr3R:21214907-21215027 ( 39) GTGGTGCG 1 chr3L:11596762-11596882 ( 31) GGGGGGCG 1 chrX:5422287-5422407 ( 47) GCGGGGCG 1 chr2R:11641964-11642084 ( 57) GGGGGGCG 1 chrX:21375719-21375839 ( 28) GTGGGGGG 1 chr2R:11633054-11633174 ( 77) GTGGGGCA 1 chrX:3175614-3175734 ( 38) GTGGCGGG 1 chr2L:10237721-10237841 ( 15) GTGCGGCG 1 chr3R:22547644-22547764 ( 69) CTGGCGCG 1 chr3R:18380161-18380281 ( 36) GAGGTGCG 1 chr2L:20082288-20082408 ( 44) GCGGGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGBGCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 2.8e+002 -1064 -149 239 -1064 -236 -49 -52 109 -1064 -1064 248 -1064 -1064 -149 239 -1064 -1064 51 129 -5 -1064 -1064 248 -1064 -1064 232 -52 -1064 -136 -1064 229 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGBGCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.8e+002 0.000000 0.062500 0.937500 0.000000 0.062500 0.125000 0.125000 0.687500 0.000000 0.000000 1.000000 0.000000 0.000000 0.062500 0.937500 0.000000 0.000000 0.250000 0.437500 0.312500 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.125000 0.000000 0.875000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGBGCG MEME-4 regular expression -------------------------------------------------------------------------------- GTGG[GTC]GCG -------------------------------------------------------------------------------- Time 25.47 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCACCM MEME-5 width = 8 sites = 7 llr = 81 E-value = 1.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCACCM MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::9::6 pos.-specific C :a:a:aa3 probability G a:a:1::1 matrix T :::::::: bits 2.5 **** ** 2.3 **** ** 2.0 **** ** 1.8 **** ** Relative 1.5 **** ** Entropy 1.3 ******* (16.8 bits) 1.0 ******* 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGCACCA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCACCM MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:14776353-14776473 33 3.19e-06 TAGTGACGAA GCGCACCA TATTTTTGTT chrX:5891787-5891907 43 3.19e-06 TAGTGACGAA GCGCACCA CGAAAATACG chr2R:7927091-7927211 3 3.19e-06 AA GCGCACCA GGATACTTTT chr3R:4398370-4398490 73 4.93e-06 TTGTGACGAA GCGCACCC GGATATTGTG chr2R:8158598-8158718 40 4.93e-06 TAGTGACGAA GCGCACCC TGAGAGCGTA chr2L:21828968-21829088 31 6.70e-06 cgcagcagca gcgcaccg gcagagcacc chr3R:16215092-16215212 110 8.47e-06 TACTGACTGA GCGCGCCA AAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCACCM MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14776353-14776473 3.2e-06 32_[+5]_80 chrX:5891787-5891907 3.2e-06 42_[+5]_70 chr2R:7927091-7927211 3.2e-06 2_[+5]_110 chr3R:4398370-4398490 4.9e-06 72_[+5]_40 chr2R:8158598-8158718 4.9e-06 39_[+5]_73 chr2L:21828968-21829088 6.7e-06 30_[+5]_82 chr3R:16215092-16215212 8.5e-06 109_[+5]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCACCM MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCACCM width=8 seqs=7 chr3L:14776353-14776473 ( 33) GCGCACCA 1 chrX:5891787-5891907 ( 43) GCGCACCA 1 chr2R:7927091-7927211 ( 3) GCGCACCA 1 chr3R:4398370-4398490 ( 73) GCGCACCC 1 chr2R:8158598-8158718 ( 40) GCGCACCC 1 chr2L:21828968-21829088 ( 31) GCGCACCG 1 chr3R:16215092-16215212 ( 110) GCGCGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCACCM MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 1.3e+003 -945 -945 248 -945 -945 251 -945 -945 -945 -945 248 -945 -945 251 -945 -945 141 -945 -33 -945 -945 251 -945 -945 -945 251 -945 -945 83 70 -33 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCACCM MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.3e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.571429 0.285714 0.142857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCACCM MEME-5 regular expression -------------------------------------------------------------------------------- GCGCACC[AC] -------------------------------------------------------------------------------- Time 31.45 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3175614-3175734 3.89e-07 37_[+4(2.39e-05)]_3_[+1(1.09e-05)]_\ 7_[+3(8.44e-06)]_49 chr3L:6619196-6619316 8.46e-03 33_[+1(1.09e-05)]_79 chr2R:7927091-7927211 1.24e-04 2_[+5(3.19e-06)]_96_[+2(1.07e-05)]_\ 6 chr2R:23569815-23569935 1.67e-03 39_[+2(3.63e-05)]_73 chr3R:9254897-9255017 1.57e-01 41_[+1(1.09e-05)]_71 chrX:11561606-11561726 7.68e-02 63_[+2(1.07e-05)]_49 chr3R:30870616-30870736 9.83e-03 20_[+1(1.09e-05)]_92 chr2R:11340159-11340279 1.70e-01 64_[+2(3.63e-05)]_48 chr3R:18895402-18895522 1.77e-03 89_[+2(1.07e-05)]_23 chr2R:8158598-8158718 4.86e-05 31_[+1(1.09e-05)]_[+5(4.93e-06)]_73 chr2L:3301196-3301316 5.36e-06 8_[+4(9.13e-05)]_43_[+2(1.07e-05)]_\ 39_[+1(1.09e-05)]_6 chr2L:16801924-16802044 4.42e-04 70_[+3(1.36e-05)]_2_[+2(3.63e-05)]_\ 32 chr2L:20082288-20082408 8.54e-04 43_[+4(6.39e-05)]_4_[+2(3.63e-05)]_\ 57 chr2R:14141371-14141491 4.42e-01 120 chr2R:10252729-10252849 3.93e-01 120 chr3R:4559147-4559267 1.21e-01 120 chr3R:29479427-29479547 1.54e-04 44_[+1(1.09e-05)]_24_[+2(1.07e-05)]_\ 36 chrX:20156086-20156206 1.96e-02 41_[+2(3.63e-05)]_71 chr2R:23748321-23748441 3.79e-03 7_[+3(8.45e-05)]_55_[+1(3.65e-05)]_\ 42 chr2R:12507546-12507666 4.60e-04 41_[+3(1.36e-05)]_36_[+1(1.09e-05)]_\ 27 chr3R:8645976-8646096 1.92e-04 58_[+2(1.07e-05)]_28_[+1(1.09e-05)]_\ 18 chrX:2638800-2638920 3.29e-02 108_[+2(1.07e-05)]_4 chr3R:18738232-18738352 2.88e-03 48_[+2(1.07e-05)]_64 chrX:18930085-18930205 3.81e-02 73_[+2(3.63e-05)]_39 chr2L:16850558-16850678 9.76e-02 62_[+2(5.29e-05)]_50 chr2L:21828968-21829088 1.89e-06 15_[+3(4.48e-05)]_7_[+5(6.70e-06)]_\ 23_[+1(1.09e-05)]_51 chr3L:20197352-20197472 1.19e-03 60_[+1(1.09e-05)]_52 chr2L:20428748-20428868 4.79e-04 34_[+2(3.63e-05)]_24_[+3(6.70e-06)]_\ 46 chr3R:4179023-4179143 6.13e-04 45_[+1(1.09e-05)]_67 chr3R:4717740-4717860 1.33e-01 120 chr2L:19550594-19550714 1.30e-02 15_[+1(5.36e-05)]_97 chr3L:1188933-1189053 1.21e-02 84_[+1(8.46e-05)]_28 chr2L:6561669-6561789 5.54e-02 45_[+1(3.65e-05)]_67 chr2L:10237721-10237841 8.31e-06 14_[+4(2.76e-05)]_11_[+1(3.65e-05)]_\ 5_[+3(2.36e-05)]_66 chr3R:15975573-15975693 4.13e-02 12_[+1(5.36e-05)]_100 chrX:5891787-5891907 1.05e-05 34_[+1(1.09e-05)]_[+5(3.19e-06)]_70 chr2R:19310922-19311042 7.95e-02 29_[+1(3.65e-05)]_83 chr2R:6206150-6206270 6.89e-02 61_[+1(1.09e-05)]_51 chr2L:20078977-20079097 1.36e-01 120 chr3R:10034984-10035104 3.74e-04 29_[+1(1.09e-05)]_83 chr3R:18380161-18380281 1.29e-04 35_[+4(4.53e-05)]_[+2(3.63e-05)]_69 chrX:19586989-19587109 1.81e-02 49_[+1(1.09e-05)]_63 chr3R:21214907-21215027 6.93e-03 38_[+4(7.12e-06)]_74 chr3L:14776353-14776473 2.84e-05 24_[+1(1.09e-05)]_[+5(3.19e-06)]_80 chr3L:11609647-11609767 1.48e-01 93_[+1(3.65e-05)]_19 chr2L:1008130-1008250 3.38e-03 67_[+1(1.69e-05)]_45 chrX:15520831-15520951 3.17e-02 65_[+2(1.07e-05)]_47 chr2R:24306059-24306179 2.68e-03 85_[+2(5.29e-05)]_27 chr3R:11178431-11178551 1.11e-05 14_[+1(3.65e-05)]_1_[+3(4.93e-06)]_\ 89 chr3L:1534232-1534352 1.50e-02 62_[+2(1.07e-05)]_38_[+2(1.07e-05)]_\ 4 chr2R:10735512-10735632 3.09e-06 15_[+4(7.12e-06)]_9_[+1(1.69e-05)]_\ 66_[+2(1.07e-05)]_6 chr3L:15072340-15072460 3.94e-02 88_[+2(3.63e-05)]_24 chrX:14850210-14850330 8.90e-03 22_[+1(1.09e-05)]_90 chrX:19243199-19243319 6.88e-01 120 chr4:695062-695182 1.24e-02 25_[+2(1.07e-05)]_87 chr3L:17547507-17547627 2.41e-02 12_[+1(1.09e-05)]_100 chr2R:11641964-11642084 7.81e-06 56_[+4(9.17e-06)]_[+2(1.07e-05)]_48 chr3R:29995208-29995328 2.08e-02 120 chr2L:11845263-11845383 8.93e-02 48_[+1(3.65e-05)]_64 chr3R:5081612-5081732 7.96e-02 33_[+1(3.65e-05)]_79 chr2L:1218646-1218766 1.38e-03 62_[+1(1.09e-05)]_50 chr2R:12954359-12954479 1.59e-02 68_[+1(1.09e-05)]_44 chr2L:3791683-3791803 7.13e-02 48_[+1(6.43e-05)]_64 chr3L:20471399-20471519 2.28e-02 36_[+1(3.65e-05)]_76 chr2R:7727698-7727818 1.03e-04 29_[+1(1.09e-05)]_9_[+3(3.19e-06)]_\ 66 chr2L:22133106-22133226 5.44e-03 47_[+2(1.07e-05)]_65 chr3L:14776146-14776266 1.77e-01 120 chr3R:16353336-16353456 9.74e-07 16_[+1(1.69e-05)]_52_[+2(1.07e-05)]_\ 6_[+4(6.39e-05)]_22 chr3R:25652367-25652487 6.46e-02 79_[+2(3.63e-05)]_33 chr2R:10252930-10253050 2.59e-02 120 chr2R:8150334-8150454 1.33e-01 72_[+1(3.65e-05)]_40 chrX:12583534-12583654 5.76e-03 94_[+1(1.09e-05)]_18 chr3L:22461370-22461490 5.95e-01 120 chrX:6361330-6361450 4.80e-04 28_[+1(1.09e-05)]_43_[+3(8.45e-05)]_\ 33 chr3L:8912566-8912686 2.65e-03 34_[+1(4.26e-05)]_37_[+1(4.26e-05)]_\ 33 chr2R:4618862-4618982 5.22e-02 30_[+2(1.07e-05)]_82 chr3R:18468960-18469080 4.70e-02 84_[+2(5.29e-05)]_28 chrX:5422287-5422407 8.73e-05 46_[+4(9.17e-06)]_38_[+1(1.09e-05)]_\ 20 chr2R:7457796-7457916 1.05e-02 53_[+1(4.26e-05)]_59 chr2R:10739826-10739946 1.30e-01 120 chr3R:4421672-4421792 1.55e-02 59_[+1(1.09e-05)]_53 chr2L:12454918-12455038 9.62e-02 7_[+2(1.07e-05)]_105 chr3R:21399887-21400007 1.68e-03 19_[+1(1.09e-05)]_93 chr2L:8931323-8931443 7.65e-04 3_[+1(3.65e-05)]_44_[+1(1.69e-05)]_\ 57 chr2R:9515902-9516022 1.62e-02 32_[+1(1.69e-05)]_80 chrX:11086398-11086518 4.07e-07 68_[+1(1.09e-05)]_1_[+3(4.93e-06)]_\ 35 chr3L:11596762-11596882 1.13e-03 30_[+4(9.17e-06)]_15_[+2(1.66e-05)]_\ 59 chrX:16091553-16091673 7.90e-03 33_[+2(1.66e-05)]_34_[+2(1.66e-05)]_\ 37 chr2L:6077445-6077565 4.82e-04 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******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************