******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Max.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:14601108-14601228 1.0000 120 chr2L:12096409-12096529 1.0000 120 chr3R:9631619-9631739 1.0000 120 chr2L:18698683-18698803 1.0000 120 chr2R:14860725-14860845 1.0000 120 chr3R:4428723-4428843 1.0000 120 chr3L:16730767-16730887 1.0000 120 chr2R:14621881-14622001 1.0000 120 chr3R:21116193-21116313 1.0000 120 chr3L:5899442-5899562 1.0000 120 chr3R:13388632-13388752 1.0000 120 chr3R:22584725-22584845 1.0000 120 chrX:15996953-15997073 1.0000 120 chr3R:13780897-13781017 1.0000 120 chr2R:20278817-20278937 1.0000 120 chrX:3530849-3530969 1.0000 120 chrX:2184683-2184803 1.0000 120 chr2R:17518189-17518309 1.0000 120 chr3R:7246912-7247032 1.0000 120 chr3L:324657-324777 1.0000 120 chr3R:22446580-22446700 1.0000 120 chr3L:19263608-19263728 1.0000 120 chr3R:21777803-21777923 1.0000 120 chrX:20391343-20391463 1.0000 120 chr3L:262830-262950 1.0000 120 chr2R:16347453-16347573 1.0000 120 chr3L:21335206-21335326 1.0000 120 chr3R:16272318-16272438 1.0000 120 chr3L:15498891-15499011 1.0000 120 chr3R:18301678-18301798 1.0000 120 chr3R:32052615-32052735 1.0000 120 chrX:2241962-2242082 1.0000 120 chr2L:20647480-20647600 1.0000 120 chr2L:12056277-12056397 1.0000 120 chr2R:24780827-24780947 1.0000 120 chr3R:22035731-22035851 1.0000 120 chr3R:31736969-31737089 1.0000 120 chr2L:6854048-6854168 1.0000 120 chr2R:10875693-10875813 1.0000 120 chr2L:21102426-21102546 1.0000 120 chrX:19616166-19616286 1.0000 120 chrX:17422093-17422213 1.0000 120 chrX:17860895-17861015 1.0000 120 chrX:15710554-15710674 1.0000 120 chrX:1464167-1464287 1.0000 120 chr3L:17804643-17804763 1.0000 120 chr3R:18283593-18283713 1.0000 120 chr3R:15262996-15263116 1.0000 120 chr2R:10838672-10838792 1.0000 120 chr2R:23907268-23907388 1.0000 120 chr2L:9711174-9711294 1.0000 120 chr3R:13964605-13964725 1.0000 120 chr3R:9628771-9628891 1.0000 120 chr2R:24187516-24187636 1.0000 120 chr2R:17789518-17789638 1.0000 120 chr2L:404172-404292 1.0000 120 chrX:7959137-7959257 1.0000 120 chr2R:6675799-6675919 1.0000 120 chr2L:9699739-9699859 1.0000 120 chr2R:9087749-9087869 1.0000 120 chrX:10786075-10786195 1.0000 120 chr2L:6717553-6717673 1.0000 120 chr2L:4227743-4227863 1.0000 120 chrX:8121034-8121154 1.0000 120 chr2R:5754482-5754602 1.0000 120 chr2R:16868311-16868431 1.0000 120 chr2R:12038924-12039044 1.0000 120 chr3R:6368933-6369053 1.0000 120 chr2L:869767-869887 1.0000 120 chr3R:5599602-5599722 1.0000 120 chr2R:10645641-10645761 1.0000 120 chr2R:9113953-9114073 1.0000 120 chr2L:5724825-5724945 1.0000 120 chr2R:22483271-22483391 1.0000 120 chr2R:7352379-7352499 1.0000 120 chr3R:15243587-15243707 1.0000 120 chr3L:5765575-5765695 1.0000 120 chr3R:31213382-31213502 1.0000 120 chr2L:273656-273776 1.0000 120 chr2L:10211069-10211189 1.0000 120 chrX:8901732-8901852 1.0000 120 chr3R:8269839-8269959 1.0000 120 chr2L:3514654-3514774 1.0000 120 chr3R:22583095-22583215 1.0000 120 chr3L:10818399-10818519 1.0000 120 chr3L:9624184-9624304 1.0000 120 chrX:13624546-13624666 1.0000 120 chrX:18515309-18515429 1.0000 120 chrX:17147972-17148092 1.0000 120 chr2R:7387242-7387362 1.0000 120 chr3R:11741955-11742075 1.0000 120 chr3R:24876971-24877091 1.0000 120 chr2L:4444686-4444806 1.0000 120 chr3R:23358870-23358990 1.0000 120 chr3R:11431521-11431641 1.0000 120 chr3R:18981026-18981146 1.0000 120 chr3R:7911664-7911784 1.0000 120 chr3R:9759455-9759575 1.0000 120 chr2L:109414-109534 1.0000 120 chr2R:14604264-14604384 1.0000 120 chr3R:14879318-14879438 1.0000 120 chr3R:22420994-22421114 1.0000 120 chr3L:18872638-18872758 1.0000 120 chr3R:30004748-30004868 1.0000 120 chr2R:22641164-22641284 1.0000 120 chrX:12611570-12611690 1.0000 120 chrX:637104-637224 1.0000 120 chr2R:13996769-13996889 1.0000 120 chrX:625255-625375 1.0000 120 chr2L:2220672-2220792 1.0000 120 chr2L:252298-252418 1.0000 120 chrX:7901836-7901956 1.0000 120 chrX:1030639-1030759 1.0000 120 chr2L:17501098-17501218 1.0000 120 chr2L:14355029-14355149 1.0000 120 chr3L:13046898-13047018 1.0000 120 chrX:5317345-5317465 1.0000 120 chr2R:11893133-11893253 1.0000 120 chr2R:13952766-13952886 1.0000 120 chr3L:20453405-20453525 1.0000 120 chr3R:31310880-31311000 1.0000 120 chrX:3573577-3573697 1.0000 120 chr3L:21026038-21026158 1.0000 120 chr3L:12537244-12537364 1.0000 120 chr3R:25627061-25627181 1.0000 120 chr2R:7589814-7589934 1.0000 120 chr3R:25074814-25074934 1.0000 120 chr2L:493430-493550 1.0000 120 chr3R:4428987-4429107 1.0000 120 chr2R:17699009-17699129 1.0000 120 chr2R:24174737-24174857 1.0000 120 chr2L:3029215-3029335 1.0000 120 chrX:13154888-13155008 1.0000 120 chrX:1353977-1354097 1.0000 120 chr3R:4804088-4804208 1.0000 120 chr2L:22130042-22130162 1.0000 120 chr2L:10299161-10299281 1.0000 120 chr2L:6907923-6908043 1.0000 120 chrX:4113730-4113850 1.0000 120 chr2R:10026746-10026866 1.0000 120 chr3R:23679959-23680079 1.0000 120 chr3R:20592566-20592686 1.0000 120 chr3L:21434005-21434125 1.0000 120 chr3L:12116253-12116373 1.0000 120 chr3R:20577050-20577170 1.0000 120 chr2L:203609-203729 1.0000 120 chr2R:12037201-12037321 1.0000 120 chrX:8075414-8075534 1.0000 120 chr2R:16951935-16952055 1.0000 120 chr2R:10810923-10811043 1.0000 120 chr3R:31596128-31596248 1.0000 120 chr2R:12870220-12870340 1.0000 120 chr2L:182794-182914 1.0000 120 chr2L:6024461-6024581 1.0000 120 chr2L:6343589-6343709 1.0000 120 chrX:19865726-19865846 1.0000 120 chr3R:16099055-16099175 1.0000 120 chr3R:21118963-21119083 1.0000 120 chr2L:9763415-9763535 1.0000 120 chr2R:16187564-16187684 1.0000 120 chr3L:16602908-16603028 1.0000 120 chr3R:25265756-25265876 1.0000 120 chr2L:20675966-20676086 1.0000 120 chr3L:12526471-12526591 1.0000 120 chr2R:21097267-21097387 1.0000 120 chr3R:11735453-11735573 1.0000 120 chrX:16446897-16447017 1.0000 120 chr2L:18566784-18566904 1.0000 120 chrX:8720242-8720362 1.0000 120 chr2L:8943218-8943338 1.0000 120 chr2R:10252374-10252494 1.0000 120 chr2R:9847934-9848054 1.0000 120 chr3L:20520768-20520888 1.0000 120 chr3L:6173934-6174054 1.0000 120 chr2R:24037766-24037886 1.0000 120 chr3L:17612403-17612523 1.0000 120 chr3R:16614449-16614569 1.0000 120 chr3R:22462308-22462428 1.0000 120 chr3R:16263975-16264095 1.0000 120 chr3L:6606085-6606205 1.0000 120 chrX:5420592-5420712 1.0000 120 chr2R:16955231-16955351 1.0000 120 chr2R:23573252-23573372 1.0000 120 chr3L:15098113-15098233 1.0000 120 chr2R:17536516-17536636 1.0000 120 chrX:1349433-1349553 1.0000 120 chr3L:19000584-19000704 1.0000 120 chr3R:6406534-6406654 1.0000 120 chrX:19243463-19243583 1.0000 120 chr3R:6346001-6346121 1.0000 120 chr2R:21324017-21324137 1.0000 120 chr2L:8511842-8511962 1.0000 120 chr3R:14285157-14285277 1.0000 120 chr3R:8030744-8030864 1.0000 120 chr3L:9546969-9547089 1.0000 120 chr2R:12468584-12468704 1.0000 120 chr3R:24585448-24585568 1.0000 120 chr3R:11431721-11431841 1.0000 120 chr3R:24333299-24333419 1.0000 120 chr3L:9511276-9511396 1.0000 120 chr2R:8631886-8632006 1.0000 120 chr3L:11285266-11285386 1.0000 120 chrX:1239942-1240062 1.0000 120 chr2L:10303888-10304008 1.0000 120 chr3R:13645244-13645364 1.0000 120 chrX:10786276-10786396 1.0000 120 chr3R:17072639-17072759 1.0000 120 chr2L:21102634-21102754 1.0000 120 chr2R:9251943-9252063 1.0000 120 chr2R:12569842-12569962 1.0000 120 chr2R:18846689-18846809 1.0000 120 chr4:1053878-1053998 1.0000 120 chr3R:13964805-13964925 1.0000 120 chr2R:17766917-17767037 1.0000 120 chr2L:11091275-11091395 1.0000 120 chr3R:29131017-29131137 1.0000 120 chr2R:10196351-10196471 1.0000 120 chr3L:16419566-16419686 1.0000 120 chr2L:21163552-21163672 1.0000 120 chr2R:18451088-18451208 1.0000 120 chr3L:14071736-14071856 1.0000 120 chr2L:10989348-10989468 1.0000 120 chr2R:9971188-9971308 1.0000 120 chr2L:18707997-18708117 1.0000 120 chr2R:19437228-19437348 1.0000 120 chr2L:7037967-7038087 1.0000 120 chr3L:21216807-21216927 1.0000 120 chr3R:24318448-24318568 1.0000 120 chr2R:15573888-15574008 1.0000 120 chr3L:5810837-5810957 1.0000 120 chr3R:6007462-6007582 1.0000 120 chr2R:21659967-21660087 1.0000 120 chr3R:29857475-29857595 1.0000 120 chrX:9319238-9319358 1.0000 120 chr2L:2217186-2217306 1.0000 120 chr3R:21218745-21218865 1.0000 120 chr3R:9039555-9039675 1.0000 120 chr3L:8604140-8604260 1.0000 120 chr2R:7566864-7566984 1.0000 120 chr3R:24817130-24817250 1.0000 120 chrX:17627761-17627881 1.0000 120 chr3R:8716150-8716270 1.0000 120 chr3L:19552342-19552462 1.0000 120 chrX:13757096-13757216 1.0000 120 chr3L:16808329-16808449 1.0000 120 chr3R:21073282-21073402 1.0000 120 chr3R:9237603-9237723 1.0000 120 chr3L:18672333-18672453 1.0000 120 chr3L:4282758-4282878 1.0000 120 chr3L:19260486-19260606 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Max/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Max.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.299 C 0.199 G 0.202 T 0.299 Background letter frequencies (from file dataset with add-one prior applied): A 0.299 C 0.199 G 0.202 T 0.299 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RCACGTGY MEME-1 width = 8 sites = 118 llr = 1014 E-value = 2.6e-103 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCACGTGY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4:a:1::: pos.-specific C 2a:9:::3 probability G 4:::9:91 matrix T :::1:a15 bits 2.3 * 2.1 * 1.9 * ** * 1.6 ****** Relative 1.4 ****** Entropy 1.2 ****** (12.4 bits) 0.9 ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCACGTGT consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACGTGY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21218745-21218865 5 8.73e-06 AATT GCACGTGT AGTGCAGTGT chr3L:9546969-9547089 70 8.73e-06 TCATCAGCGA GCACGTGT ATTTGAGACG chr3L:17612403-17612523 38 8.73e-06 GCTCGGAGCG GCACGTGT TTACAGTTGG chrX:8720242-8720362 12 8.73e-06 CGTTCAAAAT GCACGTGT GCGGTTTAGA chr3R:25265756-25265876 92 8.73e-06 TATCGTGCCT GCACGTGT GAAACGAAAA chr2R:12870220-12870340 63 8.73e-06 ACGACTGGGC GCACGTGT TTTCTGGCAA chr3L:12537244-12537364 31 8.73e-06 TTTTTTTGCC GCACGTGT AGCGTTTATA chr2R:13952766-13952886 61 8.73e-06 TGTGGCATTT GCACGTGT GTATGTATCA chrX:5317345-5317465 93 8.73e-06 GTTTGTTTAC GCACGTGT TGTGTTTGAT chrX:7901836-7901956 87 8.73e-06 CTTTGTTGCA GCACGTGT AGTGATTACA chrX:637104-637224 72 8.73e-06 CGCTCTATAT GCACGTGT GTGAGACGCA chr3R:11431521-11431641 24 8.73e-06 CAAGCTGCTA GCACGTGT GCTGCTGAAG chr3L:9624184-9624304 70 8.73e-06 CATATCTAAT GCACGTGT TGTTTCAATT chr2L:273656-273776 19 8.73e-06 TAGTTGCGGC GCACGTGT TGAGCCGATT chr3R:31213382-31213502 104 8.73e-06 TCTTATCCCC GCACGTGT TGAAATTGT chr2R:22483271-22483391 63 8.73e-06 AATATGTTTC GCACGTGT TGCATTTGAA chr2L:9699739-9699859 79 8.73e-06 TAACGCTAAC GCACGTGT TTGAAAGCGA chr2R:24187516-24187636 13 8.73e-06 ATCGGAAGAA GCACGTGT GCCACCACCT chr3R:13964605-13964725 21 8.73e-06 CTTTGTACGC GCACGTGT TGCCAACAAA chr2R:10875693-10875813 88 8.73e-06 TGTTTGAACT GCACGTGT TTATCAATTC chr2L:12056277-12056397 101 8.73e-06 TTTGGTGCTT GCACGTGT TTTAATTTAC chr3R:18301678-18301798 23 8.73e-06 TTCAAATGTT GCACGTGT GGAAAACAAA chr3R:16272318-16272438 60 8.73e-06 AGCTAAACTC GCACGTGT TGCAGATGCG chr3L:262830-262950 24 8.73e-06 AAAATAAAAT GCACGTGT GGGGTCACTA chr3L:16730767-16730887 11 8.73e-06 AGAATGAAAT GCACGTGT TGCGGCTGCT chr2L:12096409-12096529 50 8.73e-06 AATGCGAGCG GCACGTGT TGATATTCTT chr2R:14601108-14601228 73 8.73e-06 CAACAGCCGC GCACGTGT GTGGCTATTA chr3L:4282758-4282878 75 1.45e-05 GGCGTCAACA GCACGTGC ACCCGAATAG chr3L:19552342-19552462 99 1.45e-05 ATGCCGCTTT GCACGTGC TGCAATTGTT chrX:1353977-1354097 73 1.45e-05 GTGACGCGCC GCACGTGC TTACGTTTTG chr2R:5754482-5754602 79 1.45e-05 TTTCAAAGCC GCACGTGC TAAATTTAAC chrX:8121034-8121154 74 1.45e-05 ACAACAACGT GCACGTGC TGCTTCTTCT chr3L:17804643-17804763 37 1.45e-05 TGAAAACAAC GCACGTGC AATTGTTTTG chr3R:21777803-21777923 7 1.45e-05 AAAACC GCACGTGC TATTTCGGAT chrX:5420592-5420712 9 2.74e-05 CGAATTAA ACACGTGT CTACGTTCCA chr3R:31596128-31596248 37 2.74e-05 CCATTGTGAA ACACGTGT ACACAGCACA chr2R:10810923-10811043 4 2.74e-05 AAA ACACGTGT GGCGTGCGTT chr3R:20592566-20592686 69 2.74e-05 AGGAATTCAC ACACGTGT GGTTGTGCTT chrX:17147972-17148092 15 2.74e-05 GGGGAAACAA ACACGTGT GACGCACACA chr2R:6675799-6675919 41 2.74e-05 TATCGATAGC ACACGTGT GCCAAGTGCT chr2L:6854048-6854168 108 2.74e-05 CACCAACAAA ACACGTGT GGAGT chr3R:13780897-13781017 74 2.74e-05 ACTCAATGCA ACACGTGT GGACGATAAA chr3R:13388632-13388752 64 2.74e-05 TACTGCCAAA ACACGTGT GGCGAAGTGT chr2R:7566864-7566984 60 3.60e-05 CGGGCGTTGC ACACGTGC TCTGGAGTGG chr2L:21163552-21163672 91 3.60e-05 GTTGAACAGC ACACGTGC ATTTTTGTTT chr2R:16187564-16187684 54 3.60e-05 CCTACAATTA ACACGTGC GCGGCCCGAA chrX:13154888-13155008 36 3.60e-05 TAGTTTGGAA ACACGTGC TAGGAACGAC chr3R:25074814-25074934 89 3.60e-05 TTTCAACAGC ACACGTGC AACCAGAAAT chr2L:14355029-14355149 21 3.60e-05 GAAGTCCGCA ACACGTGC GCCCTCTATC chr2L:4444686-4444806 92 3.60e-05 TGCTAACTTC ACACGTGC AGTTTATGTG chr3R:22583095-22583215 103 3.60e-05 AATGCAGTCA ACACGTGC CGTCGCGCGT chr3R:6368933-6369053 59 3.60e-05 CCATTAGTAA ACACGTGC AGTTGTGTTT chrX:1464167-1464287 6 3.60e-05 CAAAA ACACGTGC AATGTTTGCC chrX:19616166-19616286 40 3.60e-05 GGTGGAAACA ACACGTGC ACTCGTGTTT chr3R:31736969-31737089 93 3.60e-05 AACAGCTGCA ACACGTGC GGTTTTAAAA chr3R:22035731-22035851 25 3.60e-05 ATGGTTAGCA ACACGTGC GCGCAATATT chrX:2241962-2242082 24 3.60e-05 GATTTAAATC ACACGTGC GAAGTACGCT chr2R:16347453-16347573 10 3.60e-05 AAAAAATAT ACACGTGC AGCTGGGCGG chr3R:22446580-22446700 42 3.60e-05 ACAGCCGCAC ACACGTGC TGGCAGAGAA chr3L:324657-324777 24 3.60e-05 AATAAAAACA ACACGTGC AAAATCGATG chrX:15996953-15997073 97 3.60e-05 ACTGTTGGCA ACACGTGC ACGAATTCGA chr3R:21116193-21116313 74 3.60e-05 ACTGATCCAT ACACGTGC GGGAGAAAAG chr2L:18698683-18698803 51 3.60e-05 GAAGAAGACA ACACGTGC GTGCATTCAA chrX:12611570-12611690 15 4.46e-05 TCAGCTGAAC CCACGTGT TGGCATTGTT chr2R:22641164-22641284 68 4.46e-05 CTCCATGTCT CCACGTGT GACATGTTTC chr2L:109414-109534 112 4.46e-05 AAATTGCCAA CCACGTGT T chr2L:20647480-20647600 69 4.46e-05 GAAAGCCGCA CCACGTGT TGCCCATTCC chr3R:4428723-4428843 17 4.46e-05 TTTGCCCCAA CCACGTGT ATGTGTATGT chr3R:9631619-9631739 49 4.46e-05 CGTGTCGAGC CCACGTGT TGAGCCAATC chr2R:12468584-12468704 91 5.63e-05 TTTGAGCGGC GCACGTGG AGCAAAATCG chr3L:15098113-15098233 101 5.63e-05 ATTTCTAAAA CCACGTGC AGCAAAGGCA chr2R:17699009-17699129 73 5.63e-05 GGTCACATCG CCACGTGC ATTCTTCCAC chr3R:31310880-31311000 78 5.63e-05 TAGCGCCACA CCACGTGC TGGCGGCGCT chr3R:22420994-22421114 40 5.63e-05 AGTTGTTTTC CCACGTGC TTACTTCAAG chr3R:15262996-15263116 40 5.63e-05 AAATGTAGCG CCACGTGC TGCATTTTCA chr3R:32052615-32052735 29 5.63e-05 TCCCTCTTTT CCACGTGC ATTTTATTGA chrX:3530849-3530969 66 5.63e-05 CACATGGCGG GCACGTGG TGGAACGCAT chr3R:22584725-22584845 70 5.63e-05 TATTGTTGCT CCACGTGC GGCGATTTTT chr3L:5899442-5899562 112 5.63e-05 ACAGTTGTCA GCACGTGG A chr2L:22130042-22130162 55 6.50e-05 AGATATATTT ACACGTGG TTTTGGCCGT chr3L:20453405-20453525 63 6.50e-05 ATCACCATTT ACACGTGG TGCAATGTGA chrX:7959137-7959257 41 6.50e-05 TGACACGGAA ACACGTGG GGGATTGCAT chr2R:14621881-14622001 90 6.50e-05 ATGTGAAAAA ACACGTGG CGAGCGGTGA chrX:15710554-15710674 11 7.08e-05 GAGAAAGGCT CCACGTGG TGGCGATGGC chr2R:24780827-24780947 74 7.08e-05 AGAGGGAATC CCACGTGG TGGTGTCTGC chr3R:8030744-8030864 113 8.37e-05 CTTGTTGATT GCACATGT chr2R:21324017-21324137 74 8.37e-05 TGCAGCATCG GCACATGT TCGAGGCTGG chr2R:23573252-23573372 37 8.37e-05 CAGCAGCCGA GCACATGT CTGCTTGCCC chr3L:12526471-12526591 38 8.37e-05 aaacaAGGGC GCACATGT ACGATAATAT chr3L:15498891-15499011 93 8.37e-05 ACTGTAGCAC GCACATGT TGTTTATGTT chr2R:17518189-17518309 44 8.37e-05 ACACTGCGCA GCACATGT GCGAGTAGTT chr2L:17501098-17501218 15 1.04e-04 AGCCGGTAGG GCGCGTGT GCGGAGAACA chr2R:16868311-16868431 85 1.04e-04 CAGCGGGTAA GCACGCGT CATTAAATGT chr2R:14860725-14860845 5 1.04e-04 TAAG GCGCGTGT CCAAATTTAG chr2L:7037967-7038087 42 1.38e-04 CCTGGTTCTT GCATGTGT TGGGCAGCAG chr2L:9763415-9763535 83 1.38e-04 ATAGTCCACA GCACGTTT TACAGCACTG chr2L:2220672-2220792 88 1.38e-04 ACACCGCTTC GCACGTTT TTATGCGGCG chr3R:7911664-7911784 78 1.38e-04 TCGCACGCTC GCACGCGC AGCTCAGTTT chrX:18515309-18515429 69 1.38e-04 TCGCACTAGC GCACGTTT TCCCACCACG chr2R:10838672-10838792 19 1.74e-04 ATACAGAGAA ACACATGT GCCTGCTGGA chr2R:7352379-7352499 68 1.87e-04 TGCGAGCGAG ACACATGC AATCCACACC chr3L:8604140-8604260 27 2.54e-04 AGAGCTGCTC ACACGTTT AGCGAGTGTT chr3R:24318448-24318568 8 2.54e-04 TTAATTC ACACGTTT TATAATGTAT chr2L:8943218-8943338 27 2.54e-04 TACAAACAAA ACATGTGT TATAGAGATG chr2L:9711174-9711294 52 2.54e-04 TGACCAAAAC ACACGTTT TTTGTGTTGT chr3L:16808329-16808449 110 2.93e-04 CATTATTTCT ACATGTGC CGG chr3R:8269839-8269959 29 2.93e-04 GTCAACAAAA ACATGTGC GCGATAGTGT chr3R:5599602-5599722 53 2.93e-04 ATGCCAGCGT ACATGTGC TTTAAACACA chr3L:21335206-21335326 39 2.93e-04 AATCGACAGA ACATGTGC TCTAGCTCCA chr2L:10989348-10989468 78 3.10e-04 TCCAAACTGT GCACATGG ATATTCTGTT chr3R:7246912-7247032 33 3.10e-04 AATGGGACGA GCACATGG AACGCCAACG chr2L:5724825-5724945 53 3.21e-04 CAAATTGAAA CCGCGTGT CTTTCGTTTC chrX:10786075-10786195 70 3.21e-04 CAATCAATTG CCACGCGT TTTACTATAG chr2R:20278817-20278937 57 3.21e-04 GTTCAAAAAA CCGCGTGT TGAATGCTGC chr2R:21097267-21097387 76 3.63e-04 ATAGCCACGG CCATGTGT TTCAGTATAT chr2R:12569842-12569962 17 4.10e-04 TTTCTTTAGT ACACATGG TAAAGCTGCC chr2R:17536516-17536636 91 4.22e-04 CCAGCGCATC ACACGCGG CGATCTAACC chr2L:6024461-6024581 46 4.48e-04 CGTTTTGTAA ACACGTTG TGTGCCAGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACGTGY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21218745-21218865 8.7e-06 4_[+1]_108 chr3L:9546969-9547089 8.7e-06 69_[+1]_43 chr3L:17612403-17612523 8.7e-06 37_[+1]_75 chrX:8720242-8720362 8.7e-06 11_[+1]_101 chr3R:25265756-25265876 8.7e-06 91_[+1]_21 chr2R:12870220-12870340 8.7e-06 62_[+1]_50 chr3L:12537244-12537364 8.7e-06 30_[+1]_82 chr2R:13952766-13952886 8.7e-06 60_[+1]_52 chrX:5317345-5317465 8.7e-06 92_[+1]_20 chrX:7901836-7901956 8.7e-06 86_[+1]_26 chrX:637104-637224 8.7e-06 71_[+1]_41 chr3R:11431521-11431641 8.7e-06 23_[+1]_89 chr3L:9624184-9624304 8.7e-06 69_[+1]_43 chr2L:273656-273776 8.7e-06 18_[+1]_94 chr3R:31213382-31213502 8.7e-06 103_[+1]_9 chr2R:22483271-22483391 8.7e-06 62_[+1]_50 chr2L:9699739-9699859 8.7e-06 78_[+1]_34 chr2R:24187516-24187636 8.7e-06 12_[+1]_100 chr3R:13964605-13964725 8.7e-06 20_[+1]_92 chr2R:10875693-10875813 8.7e-06 87_[+1]_25 chr2L:12056277-12056397 8.7e-06 100_[+1]_12 chr3R:18301678-18301798 8.7e-06 22_[+1]_90 chr3R:16272318-16272438 8.7e-06 59_[+1]_53 chr3L:262830-262950 8.7e-06 23_[+1]_89 chr3L:16730767-16730887 8.7e-06 10_[+1]_102 chr2L:12096409-12096529 8.7e-06 49_[+1]_63 chr2R:14601108-14601228 8.7e-06 72_[+1]_40 chr3L:4282758-4282878 1.5e-05 74_[+1]_38 chr3L:19552342-19552462 1.5e-05 98_[+1]_14 chrX:1353977-1354097 1.5e-05 72_[+1]_40 chr2R:5754482-5754602 1.5e-05 78_[+1]_34 chrX:8121034-8121154 1.5e-05 73_[+1]_39 chr3L:17804643-17804763 1.5e-05 36_[+1]_76 chr3R:21777803-21777923 1.5e-05 6_[+1]_106 chrX:5420592-5420712 2.7e-05 8_[+1]_104 chr3R:31596128-31596248 2.7e-05 36_[+1]_76 chr2R:10810923-10811043 2.7e-05 3_[+1]_109 chr3R:20592566-20592686 2.7e-05 68_[+1]_44 chrX:17147972-17148092 2.7e-05 14_[+1]_98 chr2R:6675799-6675919 2.7e-05 40_[+1]_72 chr2L:6854048-6854168 2.7e-05 107_[+1]_5 chr3R:13780897-13781017 2.7e-05 73_[+1]_39 chr3R:13388632-13388752 2.7e-05 63_[+1]_49 chr2R:7566864-7566984 3.6e-05 59_[+1]_53 chr2L:21163552-21163672 3.6e-05 90_[+1]_22 chr2R:16187564-16187684 3.6e-05 53_[+1]_59 chrX:13154888-13155008 3.6e-05 35_[+1]_77 chr3R:25074814-25074934 3.6e-05 88_[+1]_24 chr2L:14355029-14355149 3.6e-05 20_[+1]_92 chr2L:4444686-4444806 3.6e-05 91_[+1]_21 chr3R:22583095-22583215 3.6e-05 102_[+1]_10 chr3R:6368933-6369053 3.6e-05 58_[+1]_54 chrX:1464167-1464287 3.6e-05 5_[+1]_107 chrX:19616166-19616286 3.6e-05 39_[+1]_73 chr3R:31736969-31737089 3.6e-05 92_[+1]_20 chr3R:22035731-22035851 3.6e-05 24_[+1]_88 chrX:2241962-2242082 3.6e-05 23_[+1]_89 chr2R:16347453-16347573 3.6e-05 9_[+1]_103 chr3R:22446580-22446700 3.6e-05 41_[+1]_71 chr3L:324657-324777 3.6e-05 23_[+1]_89 chrX:15996953-15997073 3.6e-05 96_[+1]_16 chr3R:21116193-21116313 3.6e-05 73_[+1]_39 chr2L:18698683-18698803 3.6e-05 50_[+1]_62 chrX:12611570-12611690 4.5e-05 14_[+1]_98 chr2R:22641164-22641284 4.5e-05 67_[+1]_45 chr2L:109414-109534 4.5e-05 111_[+1]_1 chr2L:20647480-20647600 4.5e-05 68_[+1]_44 chr3R:4428723-4428843 4.5e-05 16_[+1]_96 chr3R:9631619-9631739 4.5e-05 48_[+1]_64 chr2R:12468584-12468704 5.6e-05 90_[+1]_22 chr3L:15098113-15098233 5.6e-05 100_[+1]_12 chr2R:17699009-17699129 5.6e-05 72_[+1]_40 chr3R:31310880-31311000 5.6e-05 77_[+1]_35 chr3R:22420994-22421114 5.6e-05 39_[+1]_73 chr3R:15262996-15263116 5.6e-05 39_[+1]_73 chr3R:32052615-32052735 5.6e-05 28_[+1]_84 chrX:3530849-3530969 5.6e-05 65_[+1]_47 chr3R:22584725-22584845 5.6e-05 69_[+1]_43 chr3L:5899442-5899562 5.6e-05 111_[+1]_1 chr2L:22130042-22130162 6.5e-05 54_[+1]_58 chr3L:20453405-20453525 6.5e-05 62_[+1]_50 chrX:7959137-7959257 6.5e-05 40_[+1]_72 chr2R:14621881-14622001 6.5e-05 89_[+1]_23 chrX:15710554-15710674 7.1e-05 10_[+1]_102 chr2R:24780827-24780947 7.1e-05 73_[+1]_39 chr3R:8030744-8030864 8.4e-05 112_[+1] chr2R:21324017-21324137 8.4e-05 73_[+1]_39 chr2R:23573252-23573372 8.4e-05 36_[+1]_76 chr3L:12526471-12526591 8.4e-05 37_[+1]_75 chr3L:15498891-15499011 8.4e-05 92_[+1]_20 chr2R:17518189-17518309 8.4e-05 43_[+1]_69 chr2L:17501098-17501218 0.0001 14_[+1]_98 chr2R:16868311-16868431 0.0001 84_[+1]_28 chr2R:14860725-14860845 0.0001 4_[+1]_108 chr2L:7037967-7038087 0.00014 41_[+1]_71 chr2L:9763415-9763535 0.00014 82_[+1]_30 chr2L:2220672-2220792 0.00014 87_[+1]_25 chr3R:7911664-7911784 0.00014 77_[+1]_35 chrX:18515309-18515429 0.00014 68_[+1]_44 chr2R:10838672-10838792 0.00017 18_[+1]_94 chr2R:7352379-7352499 0.00019 67_[+1]_45 chr3L:8604140-8604260 0.00025 26_[+1]_86 chr3R:24318448-24318568 0.00025 7_[+1]_105 chr2L:8943218-8943338 0.00025 26_[+1]_86 chr2L:9711174-9711294 0.00025 51_[+1]_61 chr3L:16808329-16808449 0.00029 109_[+1]_3 chr3R:8269839-8269959 0.00029 28_[+1]_84 chr3R:5599602-5599722 0.00029 52_[+1]_60 chr3L:21335206-21335326 0.00029 38_[+1]_74 chr2L:10989348-10989468 0.00031 77_[+1]_35 chr3R:7246912-7247032 0.00031 32_[+1]_80 chr2L:5724825-5724945 0.00032 52_[+1]_60 chrX:10786075-10786195 0.00032 69_[+1]_43 chr2R:20278817-20278937 0.00032 56_[+1]_56 chr2R:21097267-21097387 0.00036 75_[+1]_37 chr2R:12569842-12569962 0.00041 16_[+1]_96 chr2R:17536516-17536636 0.00042 90_[+1]_22 chr2L:6024461-6024581 0.00045 45_[+1]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACGTGY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCACGTGY width=8 seqs=118 chr3R:21218745-21218865 ( 5) GCACGTGT 1 chr3L:9546969-9547089 ( 70) GCACGTGT 1 chr3L:17612403-17612523 ( 38) GCACGTGT 1 chrX:8720242-8720362 ( 12) GCACGTGT 1 chr3R:25265756-25265876 ( 92) GCACGTGT 1 chr2R:12870220-12870340 ( 63) GCACGTGT 1 chr3L:12537244-12537364 ( 31) GCACGTGT 1 chr2R:13952766-13952886 ( 61) GCACGTGT 1 chrX:5317345-5317465 ( 93) GCACGTGT 1 chrX:7901836-7901956 ( 87) GCACGTGT 1 chrX:637104-637224 ( 72) GCACGTGT 1 chr3R:11431521-11431641 ( 24) GCACGTGT 1 chr3L:9624184-9624304 ( 70) GCACGTGT 1 chr2L:273656-273776 ( 19) GCACGTGT 1 chr3R:31213382-31213502 ( 104) GCACGTGT 1 chr2R:22483271-22483391 ( 63) GCACGTGT 1 chr2L:9699739-9699859 ( 79) GCACGTGT 1 chr2R:24187516-24187636 ( 13) GCACGTGT 1 chr3R:13964605-13964725 ( 21) GCACGTGT 1 chr2R:10875693-10875813 ( 88) GCACGTGT 1 chr2L:12056277-12056397 ( 101) GCACGTGT 1 chr3R:18301678-18301798 ( 23) GCACGTGT 1 chr3R:16272318-16272438 ( 60) GCACGTGT 1 chr3L:262830-262950 ( 24) GCACGTGT 1 chr3L:16730767-16730887 ( 11) GCACGTGT 1 chr2L:12096409-12096529 ( 50) GCACGTGT 1 chr2R:14601108-14601228 ( 73) GCACGTGT 1 chr3L:4282758-4282878 ( 75) GCACGTGC 1 chr3L:19552342-19552462 ( 99) GCACGTGC 1 chrX:1353977-1354097 ( 73) GCACGTGC 1 chr2R:5754482-5754602 ( 79) GCACGTGC 1 chrX:8121034-8121154 ( 74) GCACGTGC 1 chr3L:17804643-17804763 ( 37) GCACGTGC 1 chr3R:21777803-21777923 ( 7) GCACGTGC 1 chrX:5420592-5420712 ( 9) ACACGTGT 1 chr3R:31596128-31596248 ( 37) ACACGTGT 1 chr2R:10810923-10811043 ( 4) ACACGTGT 1 chr3R:20592566-20592686 ( 69) ACACGTGT 1 chrX:17147972-17148092 ( 15) ACACGTGT 1 chr2R:6675799-6675919 ( 41) ACACGTGT 1 chr2L:6854048-6854168 ( 108) ACACGTGT 1 chr3R:13780897-13781017 ( 74) ACACGTGT 1 chr3R:13388632-13388752 ( 64) ACACGTGT 1 chr2R:7566864-7566984 ( 60) ACACGTGC 1 chr2L:21163552-21163672 ( 91) ACACGTGC 1 chr2R:16187564-16187684 ( 54) ACACGTGC 1 chrX:13154888-13155008 ( 36) ACACGTGC 1 chr3R:25074814-25074934 ( 89) ACACGTGC 1 chr2L:14355029-14355149 ( 21) ACACGTGC 1 chr2L:4444686-4444806 ( 92) ACACGTGC 1 chr3R:22583095-22583215 ( 103) ACACGTGC 1 chr3R:6368933-6369053 ( 59) ACACGTGC 1 chrX:1464167-1464287 ( 6) ACACGTGC 1 chrX:19616166-19616286 ( 40) ACACGTGC 1 chr3R:31736969-31737089 ( 93) ACACGTGC 1 chr3R:22035731-22035851 ( 25) ACACGTGC 1 chrX:2241962-2242082 ( 24) ACACGTGC 1 chr2R:16347453-16347573 ( 10) ACACGTGC 1 chr3R:22446580-22446700 ( 42) ACACGTGC 1 chr3L:324657-324777 ( 24) ACACGTGC 1 chrX:15996953-15997073 ( 97) ACACGTGC 1 chr3R:21116193-21116313 ( 74) ACACGTGC 1 chr2L:18698683-18698803 ( 51) ACACGTGC 1 chrX:12611570-12611690 ( 15) CCACGTGT 1 chr2R:22641164-22641284 ( 68) CCACGTGT 1 chr2L:109414-109534 ( 112) CCACGTGT 1 chr2L:20647480-20647600 ( 69) CCACGTGT 1 chr3R:4428723-4428843 ( 17) CCACGTGT 1 chr3R:9631619-9631739 ( 49) CCACGTGT 1 chr2R:12468584-12468704 ( 91) GCACGTGG 1 chr3L:15098113-15098233 ( 101) CCACGTGC 1 chr2R:17699009-17699129 ( 73) CCACGTGC 1 chr3R:31310880-31311000 ( 78) CCACGTGC 1 chr3R:22420994-22421114 ( 40) CCACGTGC 1 chr3R:15262996-15263116 ( 40) CCACGTGC 1 chr3R:32052615-32052735 ( 29) CCACGTGC 1 chrX:3530849-3530969 ( 66) GCACGTGG 1 chr3R:22584725-22584845 ( 70) CCACGTGC 1 chr3L:5899442-5899562 ( 112) GCACGTGG 1 chr2L:22130042-22130162 ( 55) ACACGTGG 1 chr3L:20453405-20453525 ( 63) ACACGTGG 1 chrX:7959137-7959257 ( 41) ACACGTGG 1 chr2R:14621881-14622001 ( 90) ACACGTGG 1 chrX:15710554-15710674 ( 11) CCACGTGG 1 chr2R:24780827-24780947 ( 74) CCACGTGG 1 chr3R:8030744-8030864 ( 113) GCACATGT 1 chr2R:21324017-21324137 ( 74) GCACATGT 1 chr2R:23573252-23573372 ( 37) GCACATGT 1 chr3L:12526471-12526591 ( 38) GCACATGT 1 chr3L:15498891-15499011 ( 93) GCACATGT 1 chr2R:17518189-17518309 ( 44) GCACATGT 1 chr2L:17501098-17501218 ( 15) GCGCGTGT 1 chr2R:16868311-16868431 ( 85) GCACGCGT 1 chr2R:14860725-14860845 ( 5) GCGCGTGT 1 chr2L:7037967-7038087 ( 42) GCATGTGT 1 chr2L:9763415-9763535 ( 83) GCACGTTT 1 chr2L:2220672-2220792 ( 88) GCACGTTT 1 chr3R:7911664-7911784 ( 78) GCACGCGC 1 chrX:18515309-18515429 ( 69) GCACGTTT 1 chr2R:10838672-10838792 ( 19) ACACATGT 1 chr2R:7352379-7352499 ( 68) ACACATGC 1 chr3L:8604140-8604260 ( 27) ACACGTTT 1 chr3R:24318448-24318568 ( 8) ACACGTTT 1 chr2L:8943218-8943338 ( 27) ACATGTGT 1 chr2L:9711174-9711294 ( 52) ACACGTTT 1 chr3L:16808329-16808449 ( 110) ACATGTGC 1 chr3R:8269839-8269959 ( 29) ACATGTGC 1 chr3R:5599602-5599722 ( 53) ACATGTGC 1 chr3L:21335206-21335326 ( 39) ACATGTGC 1 chr2L:10989348-10989468 ( 78) GCACATGG 1 chr3R:7246912-7247032 ( 33) GCACATGG 1 chr2L:5724825-5724945 ( 53) CCGCGTGT 1 chrX:10786075-10786195 ( 70) CCACGCGT 1 chr2R:20278817-20278937 ( 57) CCGCGTGT 1 chr2R:21097267-21097387 ( 76) CCATGTGT 1 chr2R:12569842-12569962 ( 17) ACACATGG 1 chr2R:17536516-17536636 ( 91) ACACGCGG 1 chr2L:6024461-6024581 ( 46) ACACGTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACGTGY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.16286 E= 2.6e-103 38 -31 115 -1353 -1353 233 -1353 -1353 169 -1353 -257 -1353 -1353 224 -1353 -233 -168 -1353 217 -1353 -1353 -256 -1353 169 -1353 -1353 222 -233 -1353 77 -77 86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACGTGY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 118 E= 2.6e-103 0.389831 0.161017 0.449153 0.000000 0.000000 1.000000 0.000000 0.000000 0.966102 0.000000 0.033898 0.000000 0.000000 0.940678 0.000000 0.059322 0.093220 0.000000 0.906780 0.000000 0.000000 0.033898 0.000000 0.966102 0.000000 0.000000 0.940678 0.059322 0.000000 0.338983 0.118644 0.542373 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACGTGY MEME-1 regular expression -------------------------------------------------------------------------------- [GA]CACGTG[TC] -------------------------------------------------------------------------------- Time 7.32 secs. ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-2 width = 8 sites = 48 llr = 445 E-value = 2.1e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1a:::a:8 pos.-specific C 1::a:::: probability G ::::a::: matrix T 8:a:::a2 bits 2.3 ** 2.1 ** 1.9 ** 1.6 ****** Relative 1.4 ****** Entropy 1.2 ****** (13.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13757096-13757216 66 2.87e-05 CTGTGTTCTA TATCGATA ACCGATAGTC chr2L:2217186-2217306 34 2.87e-05 CCTACCAGCT TATCGATA AAACGAATTA chr2R:17766917-17767037 86 2.87e-05 CCGAGACAAC TATCGATA TGTTTCTGGA chr3R:13964805-13964925 97 2.87e-05 ATGTCTTAGT TATCGATA ATTCCCGCCA chr2L:8511842-8511962 14 2.87e-05 TACGCTTTAA TATCGATA TGTTCAGAAT chr2R:10252374-10252494 64 2.87e-05 CCCGATACCT TATCGATA CTATCGATGT chrX:16446897-16447017 102 2.87e-05 ACAGTGGTGT TATCGATA TTTAATTGCG chr2R:21097267-21097387 61 2.87e-05 GTTATCGACT TATCGATA GCCACGGCCA chrX:8075414-8075534 74 2.87e-05 TATGATATGT TATCGATA ACAGCAGACG chrX:1353977-1354097 44 2.87e-05 TACCATCCGA TATCGATA ACCAAACCGG chr2R:24174737-24174857 107 2.87e-05 TAGTCACACT TATCGATA GACCGC chr3R:25074814-25074934 26 2.87e-05 CATCAGCAGC TATCGATA AGTTATCGGC chr2L:14355029-14355149 35 2.87e-05 GTGCGCCCTC TATCGATA GACACGATTG chr2L:17501098-17501218 49 2.87e-05 GCGAAGCGAC TATCGATA GTGGCGACGC chr3R:11431521-11431641 94 2.87e-05 AGTCACTGCT TATCGATA ACACTGGCTA chr2L:273656-273776 42 2.87e-05 CGATTGGGGT TATCGATA AGATCCGATT chr2R:22483271-22483391 35 2.87e-05 GCCGACTGTC TATCGATA ACAGTGCGTA chr2R:12038924-12039044 103 2.87e-05 TGCCCAAGTA TATCGATA ACCGATAGGT chr2L:6717553-6717673 52 2.87e-05 AGTGTGAAAA TATCGATA TCATCGAAAT chr2R:9087749-9087869 63 2.87e-05 ATTAAAAACG TATCGATA GTTATATACC chr2R:6675799-6675919 31 2.87e-05 AAGCCGGTTA TATCGATA GCACACGTGT chr3R:13964605-13964725 79 2.87e-05 AATTTAAATT TATCGATA ACGTATGCAA chrX:19616166-19616286 19 2.87e-05 TGTTGCGTGC TATCGATA GACGGTGGAA chr2L:12056277-12056397 34 2.87e-05 ACACATCACT TATCGATA GCAAAGCACT chrX:2241962-2242082 42 2.87e-05 GAAGTACGCT TATCGATA ACAGCGCAGG chr2R:16347453-16347573 75 2.87e-05 ACGGTGGATT TATCGATA AGTGTGACCA chr3L:262830-262950 99 2.87e-05 CCAAACACAC TATCGATA TATGTAATAT chr3L:324657-324777 54 2.87e-05 TATTCCACAC TATCGATA ACTCCATAAA chr3L:16730767-16730887 54 2.87e-05 AAAAACATAT TATCGATA TCGGGCTCTG chr2R:21659967-21660087 90 5.74e-05 GATAACGTTC TATCGATT TGTATCGGTC chr3R:24318448-24318568 27 5.74e-05 ATAATGTATA TATCGATT TTCTATAAAC chr2R:16955231-16955351 68 5.74e-05 AGTTTGATAG TATCGATT GCAATTCACG chr3L:6173934-6174054 3 5.74e-05 GT TATCGATT GTCATTTTTC chr2R:12037201-12037321 110 5.74e-05 ATCGAATACA TATCGATT GCA chr2R:17699009-17699129 14 5.74e-05 CCTCTATAAC TATCGATT ACATGCTCGA chr2R:14604264-14604384 81 5.74e-05 GGACGTGCGT TATCGATT GGCACTTTAA chr3R:13388632-13388752 2 5.74e-05 T TATCGATT TTTTAAGCTA chr2R:14601108-14601228 103 5.74e-05 GGTGGAACCG TATCGATT TTAACGGTCA chr3L:21216807-21216927 42 7.66e-05 TGGTGTATGT CATCGATA CCACGATACA chr2L:10303888-10304008 67 7.66e-05 CTGAAATTGA CATCGATA AGCTCAAAAT chrX:13154888-13155008 96 7.66e-05 AGCTTTAGAT CATCGATA CTGCCGGAAC chr3R:31213382-31213502 53 7.66e-05 CACACTGCAA CATCGATA GCCGATAGAC chr3R:6368933-6369053 10 7.66e-05 ATCTGGAAA CATCGATA GCACAAAAAG chr3L:13046898-13047018 83 1.05e-04 GATAGGACGT AATCGATA GACTTATCGG chr3R:18283593-18283713 49 1.05e-04 GCGAAGAACA AATCGATA GAAACGGCTG chrX:1464167-1464287 82 1.05e-04 TCCTGTCGTC AATCGATA TTTACAGGTC chr3R:14285157-14285277 18 1.53e-04 CGGCAGCGGC AATCGATT TAGCTCCTGC chrX:9319238-9319358 19 1.82e-04 CCGATAGGCC TTTCGATA CACGCTTAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13757096-13757216 2.9e-05 65_[+2]_47 chr2L:2217186-2217306 2.9e-05 33_[+2]_79 chr2R:17766917-17767037 2.9e-05 85_[+2]_27 chr3R:13964805-13964925 2.9e-05 96_[+2]_16 chr2L:8511842-8511962 2.9e-05 13_[+2]_99 chr2R:10252374-10252494 2.9e-05 63_[+2]_49 chrX:16446897-16447017 2.9e-05 101_[+2]_11 chr2R:21097267-21097387 2.9e-05 60_[+2]_52 chrX:8075414-8075534 2.9e-05 73_[+2]_39 chrX:1353977-1354097 2.9e-05 43_[+2]_69 chr2R:24174737-24174857 2.9e-05 106_[+2]_6 chr3R:25074814-25074934 2.9e-05 25_[+2]_87 chr2L:14355029-14355149 2.9e-05 34_[+2]_78 chr2L:17501098-17501218 2.9e-05 48_[+2]_64 chr3R:11431521-11431641 2.9e-05 93_[+2]_19 chr2L:273656-273776 2.9e-05 41_[+2]_71 chr2R:22483271-22483391 2.9e-05 34_[+2]_78 chr2R:12038924-12039044 2.9e-05 102_[+2]_10 chr2L:6717553-6717673 2.9e-05 51_[+2]_61 chr2R:9087749-9087869 2.9e-05 62_[+2]_50 chr2R:6675799-6675919 2.9e-05 30_[+2]_82 chr3R:13964605-13964725 2.9e-05 78_[+2]_34 chrX:19616166-19616286 2.9e-05 18_[+2]_94 chr2L:12056277-12056397 2.9e-05 33_[+2]_79 chrX:2241962-2242082 2.9e-05 41_[+2]_71 chr2R:16347453-16347573 2.9e-05 74_[+2]_38 chr3L:262830-262950 2.9e-05 98_[+2]_14 chr3L:324657-324777 2.9e-05 53_[+2]_59 chr3L:16730767-16730887 2.9e-05 53_[+2]_59 chr2R:21659967-21660087 5.7e-05 89_[+2]_23 chr3R:24318448-24318568 5.7e-05 26_[+2]_86 chr2R:16955231-16955351 5.7e-05 67_[+2]_45 chr3L:6173934-6174054 5.7e-05 2_[+2]_110 chr2R:12037201-12037321 5.7e-05 109_[+2]_3 chr2R:17699009-17699129 5.7e-05 13_[+2]_99 chr2R:14604264-14604384 5.7e-05 80_[+2]_32 chr3R:13388632-13388752 5.7e-05 1_[+2]_111 chr2R:14601108-14601228 5.7e-05 102_[+2]_10 chr3L:21216807-21216927 7.7e-05 41_[+2]_71 chr2L:10303888-10304008 7.7e-05 66_[+2]_46 chrX:13154888-13155008 7.7e-05 95_[+2]_17 chr3R:31213382-31213502 7.7e-05 52_[+2]_60 chr3R:6368933-6369053 7.7e-05 9_[+2]_103 chr3L:13046898-13047018 0.00011 82_[+2]_30 chr3R:18283593-18283713 0.00011 48_[+2]_64 chrX:1464167-1464287 0.00011 81_[+2]_31 chr3R:14285157-14285277 0.00015 17_[+2]_95 chrX:9319238-9319358 0.00018 18_[+2]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=48 chrX:13757096-13757216 ( 66) TATCGATA 1 chr2L:2217186-2217306 ( 34) TATCGATA 1 chr2R:17766917-17767037 ( 86) TATCGATA 1 chr3R:13964805-13964925 ( 97) TATCGATA 1 chr2L:8511842-8511962 ( 14) TATCGATA 1 chr2R:10252374-10252494 ( 64) TATCGATA 1 chrX:16446897-16447017 ( 102) TATCGATA 1 chr2R:21097267-21097387 ( 61) TATCGATA 1 chrX:8075414-8075534 ( 74) TATCGATA 1 chrX:1353977-1354097 ( 44) TATCGATA 1 chr2R:24174737-24174857 ( 107) TATCGATA 1 chr3R:25074814-25074934 ( 26) TATCGATA 1 chr2L:14355029-14355149 ( 35) TATCGATA 1 chr2L:17501098-17501218 ( 49) TATCGATA 1 chr3R:11431521-11431641 ( 94) TATCGATA 1 chr2L:273656-273776 ( 42) TATCGATA 1 chr2R:22483271-22483391 ( 35) TATCGATA 1 chr2R:12038924-12039044 ( 103) TATCGATA 1 chr2L:6717553-6717673 ( 52) TATCGATA 1 chr2R:9087749-9087869 ( 63) TATCGATA 1 chr2R:6675799-6675919 ( 31) TATCGATA 1 chr3R:13964605-13964725 ( 79) TATCGATA 1 chrX:19616166-19616286 ( 19) TATCGATA 1 chr2L:12056277-12056397 ( 34) TATCGATA 1 chrX:2241962-2242082 ( 42) TATCGATA 1 chr2R:16347453-16347573 ( 75) TATCGATA 1 chr3L:262830-262950 ( 99) TATCGATA 1 chr3L:324657-324777 ( 54) TATCGATA 1 chr3L:16730767-16730887 ( 54) TATCGATA 1 chr2R:21659967-21660087 ( 90) TATCGATT 1 chr3R:24318448-24318568 ( 27) TATCGATT 1 chr2R:16955231-16955351 ( 68) TATCGATT 1 chr3L:6173934-6174054 ( 3) TATCGATT 1 chr2R:12037201-12037321 ( 110) TATCGATT 1 chr2R:17699009-17699129 ( 14) TATCGATT 1 chr2R:14604264-14604384 ( 81) TATCGATT 1 chr3R:13388632-13388752 ( 2) TATCGATT 1 chr2R:14601108-14601228 ( 103) TATCGATT 1 chr3L:21216807-21216927 ( 42) CATCGATA 1 chr2L:10303888-10304008 ( 67) CATCGATA 1 chrX:13154888-13155008 ( 96) CATCGATA 1 chr3R:31213382-31213502 ( 53) CATCGATA 1 chr3R:6368933-6369053 ( 10) CATCGATA 1 chr3L:13046898-13047018 ( 83) AATCGATA 1 chr3R:18283593-18283713 ( 49) AATCGATA 1 chrX:1464167-1464287 ( 82) AATCGATA 1 chr3R:14285157-14285277 ( 18) AATCGATT 1 chrX:9319238-9319358 ( 19) TTTCGATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.64666 E= 2.1e-025 -184 -94 -1223 144 171 -1223 -1223 -384 -1223 -1223 -1223 174 -1223 233 -1223 -1223 -1223 -1223 231 -1223 174 -1223 -1223 -1223 -1223 -1223 -1223 174 140 -1223 -1223 -52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 2.1e-025 0.083333 0.104167 0.000000 0.812500 0.979167 0.000000 0.000000 0.020833 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.791667 0.000000 0.000000 0.208333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 regular expression -------------------------------------------------------------------------------- TATCGAT[AT] -------------------------------------------------------------------------------- Time 13.33 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGACC MEME-3 width = 8 sites = 32 llr = 314 E-value = 6.2e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::1::8:: pos.-specific C :::1::aa probability G a:9:82:: matrix T :a:91::: bits 2.3 * 2.1 * ** 1.9 * * ** 1.6 *** ** Relative 1.4 ***** ** Entropy 1.2 ******** (14.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:9237603-9237723 89 8.73e-06 CGAACATTTA GTGTGACC GCAGCTCGAC chr3R:8716150-8716270 37 8.73e-06 GTGATTTCCA GTGTGACC GGAACTCGCA chr3R:29857475-29857595 9 8.73e-06 TGGAAACA GTGTGACC ACAGCAAAGT chr2R:19437228-19437348 7 8.73e-06 TAGCCA GTGTGACC GAATCCTTCT chr2L:10303888-10304008 38 8.73e-06 ACCGACGACA GTGTGACC AGGTGCTCCG chr3L:19000584-19000704 8 8.73e-06 TGCAACA GTGTGACC GTCCAGTCTA chr2R:10252374-10252494 20 8.73e-06 CTTGTGATCA GTGTGACC GTTGAACTAT chr2L:6024461-6024581 61 8.73e-06 TTGTGTGCCA GTGTGACC GTTTTTGAAT chr3R:31596128-31596248 90 8.73e-06 GTCTAGAGCG GTGTGACC AGGGCGGTCG chr2L:14355029-14355149 91 8.73e-06 TATCGCGGCA GTGTGACC CTTGGCTTGC chr3R:22420994-22421114 57 8.73e-06 CTTACTTCAA GTGTGACC ATAGCAAGCC chr3R:8269839-8269959 43 8.73e-06 GTGCGCGATA GTGTGACC ATTTCACACC chr2R:9113953-9114073 1 8.73e-06 . GTGTGACC GTTTGTGGGT chr2L:869767-869887 96 8.73e-06 CGGTAAATGC GTGTGACC ATATCAGGGA chr2L:9711174-9711294 90 8.73e-06 TGGAAAGGAA GTGTGACC AGTTCCAAAT chr2R:16347453-16347573 84 8.73e-06 TTATCGATAA GTGTGACC ACATCGATAG chr3R:13388632-13388752 78 8.73e-06 GTGTGGCGAA GTGTGACC GGAGCTTGAA chr3L:16730767-16730887 110 8.73e-06 CTATCGCGCG GTGTGACC CTT chrX:17627761-17627881 107 1.46e-05 GTCACGACCA GTGTGGCC GAAGGC chr3R:21218745-21218865 19 1.46e-05 GTGTAGTGCA GTGTGGCC GCACCCTCGA chr3L:5810837-5810957 60 1.46e-05 GATTTGCTGA GTGTGGCC AGTCGTGCGC chr3R:11431521-11431641 76 3.33e-05 GCAGTCAGCA GTGCGACC AGTCACTGCT chr3L:15498891-15499011 27 3.33e-05 TTTTGCATTA GTGTTACC ACACCCACTA chr2L:9699739-9699859 20 4.63e-05 CTAGATGGCA GTATGACC AGTCTTATTT chr3R:22446580-22446700 62 4.63e-05 GCAGAGAATG GTATGACC CTTTTTAAAA chr2R:21659967-21660087 32 5.49e-05 GTGCATAGCA GTGTCACC ACACCCCGGC chr3R:24333299-24333419 69 7.22e-05 ACTCAAACCA CTGTGACC ATTGCGGCTG chr3R:21116193-21116313 6 7.22e-05 GATTA GAGTGACC AAAGGCAGAC chrX:1353977-1354097 61 8.10e-05 AACCAAACCG GTGTGACG CGCCGCACGT chr3R:17072639-17072759 94 9.37e-05 AACACTGCCA GTGTTGCC AGACTGGCAG chrX:5420592-5420712 65 9.37e-05 GCGTGCGGCA GTGTTGCC ATGCATCCGC chr3L:17804643-17804763 66 1.29e-04 TTTAGGCACA GTGCTACC AGATCGGTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:9237603-9237723 8.7e-06 88_[+3]_24 chr3R:8716150-8716270 8.7e-06 36_[+3]_76 chr3R:29857475-29857595 8.7e-06 8_[+3]_104 chr2R:19437228-19437348 8.7e-06 6_[+3]_106 chr2L:10303888-10304008 8.7e-06 37_[+3]_75 chr3L:19000584-19000704 8.7e-06 7_[+3]_105 chr2R:10252374-10252494 8.7e-06 19_[+3]_93 chr2L:6024461-6024581 8.7e-06 60_[+3]_52 chr3R:31596128-31596248 8.7e-06 89_[+3]_23 chr2L:14355029-14355149 8.7e-06 90_[+3]_22 chr3R:22420994-22421114 8.7e-06 56_[+3]_56 chr3R:8269839-8269959 8.7e-06 42_[+3]_70 chr2R:9113953-9114073 8.7e-06 [+3]_112 chr2L:869767-869887 8.7e-06 95_[+3]_17 chr2L:9711174-9711294 8.7e-06 89_[+3]_23 chr2R:16347453-16347573 8.7e-06 83_[+3]_29 chr3R:13388632-13388752 8.7e-06 77_[+3]_35 chr3L:16730767-16730887 8.7e-06 109_[+3]_3 chrX:17627761-17627881 1.5e-05 106_[+3]_6 chr3R:21218745-21218865 1.5e-05 18_[+3]_94 chr3L:5810837-5810957 1.5e-05 59_[+3]_53 chr3R:11431521-11431641 3.3e-05 75_[+3]_37 chr3L:15498891-15499011 3.3e-05 26_[+3]_86 chr2L:9699739-9699859 4.6e-05 19_[+3]_93 chr3R:22446580-22446700 4.6e-05 61_[+3]_51 chr2R:21659967-21660087 5.5e-05 31_[+3]_81 chr3R:24333299-24333419 7.2e-05 68_[+3]_44 chr3R:21116193-21116313 7.2e-05 5_[+3]_107 chrX:1353977-1354097 8.1e-05 60_[+3]_52 chr3R:17072639-17072759 9.4e-05 93_[+3]_19 chrX:5420592-5420712 9.4e-05 64_[+3]_48 chr3L:17804643-17804763 0.00013 65_[+3]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGACC width=8 seqs=32 chr3R:9237603-9237723 ( 89) GTGTGACC 1 chr3R:8716150-8716270 ( 37) GTGTGACC 1 chr3R:29857475-29857595 ( 9) GTGTGACC 1 chr2R:19437228-19437348 ( 7) GTGTGACC 1 chr2L:10303888-10304008 ( 38) GTGTGACC 1 chr3L:19000584-19000704 ( 8) GTGTGACC 1 chr2R:10252374-10252494 ( 20) GTGTGACC 1 chr2L:6024461-6024581 ( 61) GTGTGACC 1 chr3R:31596128-31596248 ( 90) GTGTGACC 1 chr2L:14355029-14355149 ( 91) GTGTGACC 1 chr3R:22420994-22421114 ( 57) GTGTGACC 1 chr3R:8269839-8269959 ( 43) GTGTGACC 1 chr2R:9113953-9114073 ( 1) GTGTGACC 1 chr2L:869767-869887 ( 96) GTGTGACC 1 chr2L:9711174-9711294 ( 90) GTGTGACC 1 chr2R:16347453-16347573 ( 84) GTGTGACC 1 chr3R:13388632-13388752 ( 78) GTGTGACC 1 chr3L:16730767-16730887 ( 110) GTGTGACC 1 chrX:17627761-17627881 ( 107) GTGTGGCC 1 chr3R:21218745-21218865 ( 19) GTGTGGCC 1 chr3L:5810837-5810957 ( 60) GTGTGGCC 1 chr3R:11431521-11431641 ( 76) GTGCGACC 1 chr3L:15498891-15499011 ( 27) GTGTTACC 1 chr2L:9699739-9699859 ( 20) GTATGACC 1 chr3R:22446580-22446700 ( 62) GTATGACC 1 chr2R:21659967-21660087 ( 32) GTGTCACC 1 chr3R:24333299-24333419 ( 69) CTGTGACC 1 chr3R:21116193-21116313 ( 6) GAGTGACC 1 chrX:1353977-1354097 ( 61) GTGTGACG 1 chr3R:17072639-17072759 ( 94) GTGTTGCC 1 chrX:5420592-5420712 ( 65) GTGTTGCC 1 chr3L:17804643-17804763 ( 66) GTGCTACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5219 E= 6.2e-016 -1164 -267 226 -1164 -326 -1164 -1164 169 -226 -1164 221 -1164 -1164 -167 -1164 165 -1164 -267 206 -126 149 -1164 -37 -1164 -1164 233 -1164 -1164 -1164 228 -269 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 6.2e-016 0.000000 0.031250 0.968750 0.000000 0.031250 0.000000 0.000000 0.968750 0.062500 0.000000 0.937500 0.000000 0.000000 0.062500 0.000000 0.937500 0.000000 0.031250 0.843750 0.125000 0.843750 0.000000 0.156250 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.968750 0.031250 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 regular expression -------------------------------------------------------------------------------- GTGTGACC -------------------------------------------------------------------------------- Time 19.27 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTCACAC MEME-4 width = 8 sites = 28 llr = 272 E-value = 1.8e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a:9: pos.-specific C ::1a:9:8 probability G aa:::::: matrix T ::8::111 bits 2.3 ** 2.1 ** * 1.9 ** * * 1.6 ** *** Relative 1.4 ** ***** Entropy 1.2 ** ***** (14.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTCACAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16419566-16419686 101 8.60e-06 TTTTGTAGCT GGTCACAC CAAATTGCGA chr2R:21097267-21097387 111 8.60e-06 TATATTATAC GGTCACAC TA chr2L:2220672-2220792 74 8.60e-06 AACTGATAAC GGTCACAC CGCTTCGCAC chr3R:31213382-31213502 40 8.60e-06 GCCGCGTGAA GGTCACAC TGCAACATCG chr2R:5754482-5754602 31 8.60e-06 ATGTTCCTGC GGTCACAC TAAAACTGAA chr2L:6717553-6717673 18 8.60e-06 TTGCGTAAGC GGTCACAC TGCTCCGCTT chr2R:23907268-23907388 58 8.60e-06 GACAGGCTGT GGTCACAC TACCTTCCCA chr2R:10838672-10838792 75 8.60e-06 ACTGCCTTGC GGTCACAC TGTTTTTTTC chrX:15710554-15710674 81 8.60e-06 AATGCGTTAA GGTCACAC TGGCACACGG chr2R:10875693-10875813 61 8.60e-06 AATAGGATCT GGTCACAC AACCTGCCTT chr3R:32052615-32052735 4 8.60e-06 AAC GGTCACAC TGTTCTGTCC chrX:20391343-20391463 107 8.60e-06 ATTCGAGCGC GGTCACAC TGAGCA chr2R:17518189-17518309 30 8.60e-06 TGCGTGCTCT GGTCACAC TGCGCAGCAC chr3R:13964805-13964925 72 1.43e-05 GTCGAGAGCT GGCCACAC TCTTGGCATG chr2L:6854048-6854168 93 1.43e-05 AGAGATCTTT GGCCACAC CAACAAAACA chrX:15996953-15997073 81 1.43e-05 TTGTCAATAC GGCCACAC TGTTGGCAAC chr3L:16808329-16808449 95 2.72e-05 TTCGACGACA GGTCACAT TATTTCTACA chr2R:17699009-17699129 63 2.72e-05 ATCGTAGTGC GGTCACAT CGCCACGTGC chrX:18515309-18515429 95 2.72e-05 CGCGACGAAC GGTCACAT TGACCACCGC chr2L:21102426-21102546 60 3.58e-05 TAGTGTTATT GGTCACTC TTGGGTGCTC chr3R:31736969-31737089 73 3.58e-05 TACGGTCCAC GGTCACTC CTAACAGCTG chr3R:5599602-5599722 91 4.16e-05 AGCGGAGAAC GGGCACAC TTCACATCTC chr3R:23679959-23680079 103 4.74e-05 ACGCGACAAC GGTCCCAC TCAACTATTT chr3L:15098113-15098233 51 6.03e-05 AATGAGCGGT GGTCATAC CATAAATACG chr3R:22584725-22584845 49 6.03e-05 GAACGTAAAC GGTCATAC CATTATTGTT chr3L:5899442-5899562 98 6.90e-05 TCTAGTGCAT GGTCACAG TTGTCAGCAC chr3R:8716150-8716270 106 7.76e-05 ACTCGCCCAT GGCCACAT TTGTGCA chr3L:6606085-6606205 108 9.05e-05 TTTACCATCT GGTAACAC TAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16419566-16419686 8.6e-06 100_[+4]_12 chr2R:21097267-21097387 8.6e-06 110_[+4]_2 chr2L:2220672-2220792 8.6e-06 73_[+4]_39 chr3R:31213382-31213502 8.6e-06 39_[+4]_73 chr2R:5754482-5754602 8.6e-06 30_[+4]_82 chr2L:6717553-6717673 8.6e-06 17_[+4]_95 chr2R:23907268-23907388 8.6e-06 57_[+4]_55 chr2R:10838672-10838792 8.6e-06 74_[+4]_38 chrX:15710554-15710674 8.6e-06 80_[+4]_32 chr2R:10875693-10875813 8.6e-06 60_[+4]_52 chr3R:32052615-32052735 8.6e-06 3_[+4]_109 chrX:20391343-20391463 8.6e-06 106_[+4]_6 chr2R:17518189-17518309 8.6e-06 29_[+4]_83 chr3R:13964805-13964925 1.4e-05 71_[+4]_41 chr2L:6854048-6854168 1.4e-05 92_[+4]_20 chrX:15996953-15997073 1.4e-05 80_[+4]_32 chr3L:16808329-16808449 2.7e-05 94_[+4]_18 chr2R:17699009-17699129 2.7e-05 62_[+4]_50 chrX:18515309-18515429 2.7e-05 94_[+4]_18 chr2L:21102426-21102546 3.6e-05 59_[+4]_53 chr3R:31736969-31737089 3.6e-05 72_[+4]_40 chr3R:5599602-5599722 4.2e-05 90_[+4]_22 chr3R:23679959-23680079 4.7e-05 102_[+4]_10 chr3L:15098113-15098233 6e-05 50_[+4]_62 chr3R:22584725-22584845 6e-05 48_[+4]_64 chr3L:5899442-5899562 6.9e-05 97_[+4]_15 chr3R:8716150-8716270 7.8e-05 105_[+4]_7 chr3L:6606085-6606205 9.1e-05 107_[+4]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTCACAC width=8 seqs=28 chr3L:16419566-16419686 ( 101) GGTCACAC 1 chr2R:21097267-21097387 ( 111) GGTCACAC 1 chr2L:2220672-2220792 ( 74) GGTCACAC 1 chr3R:31213382-31213502 ( 40) GGTCACAC 1 chr2R:5754482-5754602 ( 31) GGTCACAC 1 chr2L:6717553-6717673 ( 18) GGTCACAC 1 chr2R:23907268-23907388 ( 58) GGTCACAC 1 chr2R:10838672-10838792 ( 75) GGTCACAC 1 chrX:15710554-15710674 ( 81) GGTCACAC 1 chr2R:10875693-10875813 ( 61) GGTCACAC 1 chr3R:32052615-32052735 ( 4) GGTCACAC 1 chrX:20391343-20391463 ( 107) GGTCACAC 1 chr2R:17518189-17518309 ( 30) GGTCACAC 1 chr3R:13964805-13964925 ( 72) GGCCACAC 1 chr2L:6854048-6854168 ( 93) GGCCACAC 1 chrX:15996953-15997073 ( 81) GGCCACAC 1 chr3L:16808329-16808449 ( 95) GGTCACAT 1 chr2R:17699009-17699129 ( 63) GGTCACAT 1 chrX:18515309-18515429 ( 95) GGTCACAT 1 chr2L:21102426-21102546 ( 60) GGTCACTC 1 chr3R:31736969-31737089 ( 73) GGTCACTC 1 chr3R:5599602-5599722 ( 91) GGGCACAC 1 chr3R:23679959-23680079 ( 103) GGTCCCAC 1 chr3L:15098113-15098233 ( 51) GGTCATAC 1 chr3R:22584725-22584845 ( 49) GGTCATAC 1 chr3L:5899442-5899562 ( 98) GGTCACAG 1 chr3R:8716150-8716270 ( 106) GGCCACAT 1 chr3L:6606085-6606205 ( 108) GGTAACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5834 E= 1.8e-008 -1145 -1145 231 -1145 -1145 -1145 231 -1145 -1145 -48 -250 146 -306 227 -1145 -1145 169 -248 -1145 -1145 -1145 222 -1145 -207 163 -1145 -1145 -207 -1145 204 -250 -107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 1.8e-008 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.035714 0.821429 0.035714 0.964286 0.000000 0.000000 0.964286 0.035714 0.000000 0.000000 0.000000 0.928571 0.000000 0.071429 0.928571 0.000000 0.000000 0.071429 0.000000 0.821429 0.035714 0.142857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 regular expression -------------------------------------------------------------------------------- GGTCACAC -------------------------------------------------------------------------------- Time 25.17 secs. ******************************************************************************** ******************************************************************************** MOTIF AWCAGCTG MEME-5 width = 8 sites = 29 llr = 272 E-value = 3.3e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A a6:8:::: pos.-specific C ::a1:a1: probability G ::::a:1a matrix T :4:1::8: bits 2.3 * ** * 2.1 * ** * 1.9 * ** * 1.6 * * ** * Relative 1.4 * * ** * Entropy 1.2 * * ** * (13.5 bits) 0.9 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AACAGCTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2217186-2217306 85 1.29e-05 ACATGCGGCC AACAGCTG GTCGACCGGC chr2L:10989348-10989468 1 1.29e-05 . AACAGCTG GTGCGTGCGC chr2R:9251943-9252063 78 1.29e-05 AGCCCTTCGC AACAGCTG TTGTGAATCT chr3R:8030744-8030864 95 1.29e-05 GTGAATGAGA AACAGCTG CTTGTTGATT chr2L:17501098-17501218 29 1.29e-05 GTGTGCGGAG AACAGCTG TTGCGAAGCG chr3R:14879318-14879438 106 1.29e-05 CGAGGGCTGC AACAGCTG AAGTCAG chr3R:11741955-11742075 87 1.29e-05 AACCATATCG AACAGCTG AGTGGCTACA chr3R:31736969-31737089 83 1.29e-05 GGTCACTCCT AACAGCTG CAACACGTGC chr3R:7246912-7247032 77 1.29e-05 AGCGGAGCGC AACAGCTG CTCAGAAGCG chr3R:13780897-13781017 90 1.29e-05 GTGGACGATA AACAGCTG TTCGGGCGGC chrX:9319238-9319358 86 2.58e-05 TCACTGGAAC ATCAGCTG TGCGCACCAA chr3L:14071736-14071856 73 2.58e-05 gccatctcta atcagctg tctcacctgt chr3R:20592566-20592686 108 2.58e-05 TCTGTTACGG ATCAGCTG TTTTA chrX:8121034-8121154 99 2.58e-05 TCTTCTTCAA ATCAGCTG TCCCGGAGTG chr2L:6854048-6854168 4 2.58e-05 AAA ATCAGCTG TAGTATACTG chr3L:15498891-15499011 54 2.58e-05 ACTCAACACA ATCAGCTG ACAGCCGCTC chr2R:14860725-14860845 35 2.58e-05 CTTTTGTGGT ATCAGCTG TTTGGCGAGT chr2R:24187516-24187636 106 3.46e-05 TCTGGAAGTA AACAGCGG CCAGGGC chrX:3573577-3573697 24 4.33e-05 GAGTTGCCAG ATCAGCGG AGAACGCTAA chr2L:869767-869887 81 4.33e-05 AGGCTGCCAG ATCAGCGG TAAATGCGTG chr2R:16868311-16868431 73 4.33e-05 CAACAGCTAC ATCAGCGG GTAAGCACGC chr3R:24585448-24585568 86 5.62e-05 GCCTGAATAA AACTGCTG CTCATCAATA chr2R:7387242-7387362 66 5.62e-05 CTTAAGCTTG AACTGCTG TTTTTTTTTA chr3R:21073282-21073402 50 8.63e-05 GTGTGCACGT ATCTGCTG TGACATTGGG chr3L:6173934-6174054 37 8.63e-05 TTCACACGAT AACCGCTG CACATATTGT chr3R:22446580-22446700 31 8.63e-05 TAAACACAAA AACAGCCG CACACACGTG chr2L:12096409-12096529 100 8.63e-05 AACGCAGACA ATCTGCTG TGTGGGGCAG chr2R:14601108-14601228 64 8.63e-05 AGATGAGCGC AACAGCCG CGCACGTGTG chr2R:21324017-21324137 113 1.03e-04 TTTTCCCGCC ATCCGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2217186-2217306 1.3e-05 84_[+5]_28 chr2L:10989348-10989468 1.3e-05 [+5]_112 chr2R:9251943-9252063 1.3e-05 77_[+5]_35 chr3R:8030744-8030864 1.3e-05 94_[+5]_18 chr2L:17501098-17501218 1.3e-05 28_[+5]_84 chr3R:14879318-14879438 1.3e-05 105_[+5]_7 chr3R:11741955-11742075 1.3e-05 86_[+5]_26 chr3R:31736969-31737089 1.3e-05 82_[+5]_30 chr3R:7246912-7247032 1.3e-05 76_[+5]_36 chr3R:13780897-13781017 1.3e-05 89_[+5]_23 chrX:9319238-9319358 2.6e-05 85_[+5]_27 chr3L:14071736-14071856 2.6e-05 72_[+5]_40 chr3R:20592566-20592686 2.6e-05 107_[+5]_5 chrX:8121034-8121154 2.6e-05 98_[+5]_14 chr2L:6854048-6854168 2.6e-05 3_[+5]_109 chr3L:15498891-15499011 2.6e-05 53_[+5]_59 chr2R:14860725-14860845 2.6e-05 34_[+5]_78 chr2R:24187516-24187636 3.5e-05 105_[+5]_7 chrX:3573577-3573697 4.3e-05 23_[+5]_89 chr2L:869767-869887 4.3e-05 80_[+5]_32 chr2R:16868311-16868431 4.3e-05 72_[+5]_40 chr3R:24585448-24585568 5.6e-05 85_[+5]_27 chr2R:7387242-7387362 5.6e-05 65_[+5]_47 chr3R:21073282-21073402 8.6e-05 49_[+5]_63 chr3L:6173934-6174054 8.6e-05 36_[+5]_76 chr3R:22446580-22446700 8.6e-05 30_[+5]_82 chr2L:12096409-12096529 8.6e-05 99_[+5]_13 chr2R:14601108-14601228 8.6e-05 63_[+5]_49 chr2R:21324017-21324137 0.0001 112_[+5] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWCAGCTG width=8 seqs=29 chr2L:2217186-2217306 ( 85) AACAGCTG 1 chr2L:10989348-10989468 ( 1) AACAGCTG 1 chr2R:9251943-9252063 ( 78) AACAGCTG 1 chr3R:8030744-8030864 ( 95) AACAGCTG 1 chr2L:17501098-17501218 ( 29) AACAGCTG 1 chr3R:14879318-14879438 ( 106) AACAGCTG 1 chr3R:11741955-11742075 ( 87) AACAGCTG 1 chr3R:31736969-31737089 ( 83) AACAGCTG 1 chr3R:7246912-7247032 ( 77) AACAGCTG 1 chr3R:13780897-13781017 ( 90) AACAGCTG 1 chrX:9319238-9319358 ( 86) ATCAGCTG 1 chr3L:14071736-14071856 ( 73) ATCAGCTG 1 chr3R:20592566-20592686 ( 108) ATCAGCTG 1 chrX:8121034-8121154 ( 99) ATCAGCTG 1 chr2L:6854048-6854168 ( 4) ATCAGCTG 1 chr3L:15498891-15499011 ( 54) ATCAGCTG 1 chr2R:14860725-14860845 ( 35) ATCAGCTG 1 chr2R:24187516-24187636 ( 106) AACAGCGG 1 chrX:3573577-3573697 ( 24) ATCAGCGG 1 chr2L:869767-869887 ( 81) ATCAGCGG 1 chr2R:16868311-16868431 ( 73) ATCAGCGG 1 chr3R:24585448-24585568 ( 86) AACTGCTG 1 chr2R:7387242-7387362 ( 66) AACTGCTG 1 chr3R:21073282-21073402 ( 50) ATCTGCTG 1 chr3L:6173934-6174054 ( 37) AACCGCTG 1 chr3R:22446580-22446700 ( 31) AACAGCCG 1 chr2L:12096409-12096529 ( 100) ATCTGCTG 1 chr2R:14601108-14601228 ( 64) AACAGCCG 1 chr2R:21324017-21324137 ( 113) ATCCGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1765 E= 3.3e-005 174 -1150 -1150 -1150 88 -1150 -1150 58 -1150 233 -1150 -1150 140 -153 -1150 -112 -1150 -1150 231 -1150 -1150 233 -1150 -1150 -1150 -153 -55 141 -1150 -1150 231 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 3.3e-005 1.000000 0.000000 0.000000 0.000000 0.551724 0.000000 0.000000 0.448276 0.000000 1.000000 0.000000 0.000000 0.793103 0.068966 0.000000 0.137931 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.068966 0.137931 0.793103 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 regular expression -------------------------------------------------------------------------------- A[AT]CAGCTG -------------------------------------------------------------------------------- Time 31.03 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14601108-14601228 2.88e-05 63_[+5(8.63e-05)]_1_[+1(8.73e-06)]_\ 22_[+2(5.74e-05)]_10 chr2L:12096409-12096529 2.26e-03 49_[+1(8.73e-06)]_42_[+5(8.63e-05)]_\ 13 chr3R:9631619-9631739 5.23e-02 48_[+1(4.46e-05)]_64 chr2L:18698683-18698803 8.37e-02 50_[+1(3.60e-05)]_62 chr2R:14860725-14860845 2.11e-03 34_[+5(2.58e-05)]_78 chr3R:4428723-4428843 3.60e-02 16_[+1(4.46e-05)]_96 chr3L:16730767-16730887 7.96e-06 10_[+1(8.73e-06)]_35_[+2(2.87e-05)]_\ 48_[+3(8.73e-06)]_3 chr2R:14621881-14622001 8.58e-02 89_[+1(6.50e-05)]_23 chr3R:21116193-21116313 2.79e-03 5_[+3(7.22e-05)]_60_[+1(3.60e-05)]_\ 39 chr3L:5899442-5899562 8.19e-03 97_[+4(6.90e-05)]_6_[+1(5.63e-05)]_\ 1 chr3R:13388632-13388752 4.05e-05 1_[+2(5.74e-05)]_54_[+1(2.74e-05)]_\ 6_[+3(8.73e-06)]_35 chr3R:22584725-22584845 4.02e-04 48_[+4(6.03e-05)]_13_[+1(5.63e-05)]_\ 43 chrX:15996953-15997073 7.68e-04 80_[+4(1.43e-05)]_8_[+1(3.60e-05)]_\ 16 chr3R:13780897-13781017 1.32e-04 73_[+1(2.74e-05)]_8_[+5(1.29e-05)]_\ 23 chr2R:20278817-20278937 1.80e-01 120 chrX:3530849-3530969 1.15e-01 65_[+1(5.63e-05)]_47 chrX:2184683-2184803 6.17e-01 120 chr2R:17518189-17518309 3.94e-03 29_[+4(8.60e-06)]_6_[+1(8.37e-05)]_\ 69 chr3R:7246912-7247032 5.26e-03 76_[+5(1.29e-05)]_36 chr3L:324657-324777 5.14e-03 23_[+1(3.60e-05)]_22_[+2(2.87e-05)]_\ 59 chr3R:22446580-22446700 1.82e-04 30_[+5(8.63e-05)]_3_[+1(3.60e-05)]_\ 12_[+3(4.63e-05)]_51 chr3L:19263608-19263728 9.29e-02 120 chr3R:21777803-21777923 7.21e-02 6_[+1(1.45e-05)]_106 chrX:20391343-20391463 2.97e-02 106_[+4(8.60e-06)]_6 chr3L:262830-262950 5.56e-04 23_[+1(8.73e-06)]_22_[+2(5.74e-05)]_\ 37_[+2(2.87e-05)]_14 chr2R:16347453-16347573 1.00e-05 9_[+1(3.60e-05)]_57_[+2(2.87e-05)]_\ 1_[+3(8.73e-06)]_1_[+2(7.66e-05)]_20 chr3L:21335206-21335326 3.91e-02 120 chr3R:16272318-16272438 3.50e-02 59_[+1(8.73e-06)]_53 chr3L:15498891-15499011 1.23e-05 1_[+3(3.33e-05)]_17_[+3(3.33e-05)]_\ 19_[+5(2.58e-05)]_31_[+1(8.37e-05)]_20 chr3R:18301678-18301798 9.05e-03 22_[+1(8.73e-06)]_90 chr3R:32052615-32052735 8.61e-04 3_[+4(8.60e-06)]_17_[+1(5.63e-05)]_\ 84 chrX:2241962-2242082 9.35e-04 23_[+1(3.60e-05)]_10_[+2(2.87e-05)]_\ 71 chr2L:20647480-20647600 9.01e-03 68_[+1(4.46e-05)]_44 chr2L:12056277-12056397 1.21e-04 33_[+2(2.87e-05)]_59_[+1(8.73e-06)]_\ 12 chr2R:24780827-24780947 9.35e-02 73_[+1(7.08e-05)]_39 chr3R:22035731-22035851 1.16e-01 24_[+1(3.60e-05)]_88 chr3R:31736969-31737089 4.14e-05 72_[+4(3.58e-05)]_2_[+5(1.29e-05)]_\ 2_[+1(3.60e-05)]_20 chr2L:6854048-6854168 9.04e-06 3_[+5(2.58e-05)]_81_[+4(1.43e-05)]_\ 7_[+1(2.74e-05)]_5 chr2R:10875693-10875813 7.15e-05 60_[+4(8.60e-06)]_19_[+1(8.73e-06)]_\ 25 chr2L:21102426-21102546 3.27e-02 59_[+4(3.58e-05)]_53 chrX:19616166-19616286 1.93e-03 18_[+2(2.87e-05)]_13_[+1(3.60e-05)]_\ 73 chrX:17422093-17422213 4.24e-02 120 chrX:17860895-17861015 9.82e-01 120 chrX:15710554-15710674 5.58e-03 10_[+1(7.08e-05)]_62_[+4(8.60e-06)]_\ 15_[+4(4.16e-05)]_9 chrX:1464167-1464287 1.32e-02 5_[+1(3.60e-05)]_107 chr3L:17804643-17804763 2.96e-03 36_[+1(1.45e-05)]_76 chr3R:18283593-18283713 9.90e-03 120 chr3R:15262996-15263116 8.24e-02 39_[+1(5.63e-05)]_73 chr2R:10838672-10838792 1.48e-03 74_[+4(8.60e-06)]_38 chr2R:23907268-23907388 1.50e-02 57_[+4(8.60e-06)]_55 chr2L:9711174-9711294 1.33e-02 89_[+3(8.73e-06)]_23 chr3R:13964605-13964725 3.78e-05 20_[+1(8.73e-06)]_50_[+2(2.87e-05)]_\ 34 chr3R:9628771-9628891 7.20e-02 120 chr2R:24187516-24187636 1.74e-04 12_[+1(8.73e-06)]_37_[+5(8.63e-05)]_\ 40_[+5(3.46e-05)]_7 chr2R:17789518-17789638 4.84e-01 120 chr2L:404172-404292 8.63e-01 120 chrX:7959137-7959257 9.53e-02 40_[+1(6.50e-05)]_72 chr2R:6675799-6675919 3.05e-03 30_[+2(2.87e-05)]_2_[+1(2.74e-05)]_\ 72 chr2L:9699739-9699859 9.21e-04 19_[+3(4.63e-05)]_51_[+1(8.73e-06)]_\ 34 chr2R:9087749-9087869 1.37e-01 62_[+2(2.87e-05)]_50 chrX:10786075-10786195 8.33e-02 120 chr2L:6717553-6717673 3.32e-04 17_[+4(8.60e-06)]_26_[+2(2.87e-05)]_\ 61 chr2L:4227743-4227863 4.25e-01 120 chrX:8121034-8121154 2.06e-03 73_[+1(1.45e-05)]_17_[+5(2.58e-05)]_\ 14 chr2R:5754482-5754602 5.68e-04 30_[+4(8.60e-06)]_40_[+1(1.45e-05)]_\ 34 chr2R:16868311-16868431 1.52e-03 72_[+5(4.33e-05)]_40 chr2R:12038924-12039044 6.03e-02 102_[+2(2.87e-05)]_10 chr3R:6368933-6369053 3.60e-03 9_[+2(7.66e-05)]_41_[+1(3.60e-05)]_\ 54 chr2L:869767-869887 1.03e-04 80_[+5(4.33e-05)]_7_[+3(8.73e-06)]_\ 17 chr3R:5599602-5599722 1.21e-02 90_[+4(4.16e-05)]_22 chr2R:10645641-10645761 3.20e-01 120 chr2R:9113953-9114073 7.79e-02 [+3(8.73e-06)]_112 chr2L:5724825-5724945 5.93e-02 120 chr2R:22483271-22483391 4.99e-04 34_[+2(2.87e-05)]_20_[+1(8.73e-06)]_\ 50 chr2R:7352379-7352499 5.59e-02 120 chr3R:15243587-15243707 1.28e-01 120 chr3L:5765575-5765695 9.79e-01 120 chr3R:31213382-31213502 3.87e-05 39_[+4(8.60e-06)]_5_[+2(7.66e-05)]_\ 43_[+1(8.73e-06)]_9 chr2L:273656-273776 7.26e-04 18_[+1(8.73e-06)]_15_[+2(2.87e-05)]_\ 71 chr2L:10211069-10211189 7.45e-01 120 chrX:8901732-8901852 2.56e-01 120 chr3R:8269839-8269959 6.78e-03 42_[+3(8.73e-06)]_70 chr2L:3514654-3514774 9.91e-01 120 chr3R:22583095-22583215 2.32e-03 102_[+1(3.60e-05)]_10 chr3L:10818399-10818519 2.34e-01 120 chr3L:9624184-9624304 1.06e-02 69_[+1(8.73e-06)]_43 chrX:13624546-13624666 8.19e-01 120 chrX:18515309-18515429 7.07e-03 94_[+4(2.72e-05)]_18 chrX:17147972-17148092 1.35e-03 14_[+1(2.74e-05)]_98 chr2R:7387242-7387362 5.43e-02 65_[+5(5.62e-05)]_47 chr3R:11741955-11742075 6.82e-03 86_[+5(1.29e-05)]_26 chr3R:24876971-24877091 4.77e-01 120 chr2L:4444686-4444806 2.43e-02 91_[+1(3.60e-05)]_21 chr3R:23358870-23358990 6.18e-01 120 chr3R:11431521-11431641 9.88e-06 23_[+1(8.73e-06)]_44_[+3(3.33e-05)]_\ 10_[+2(2.87e-05)]_19 chr3R:18981026-18981146 5.94e-01 120 chr3R:7911664-7911784 9.34e-02 120 chr3R:9759455-9759575 5.35e-01 120 chr2L:109414-109534 2.68e-02 111_[+1(4.46e-05)]_1 chr2R:14604264-14604384 8.20e-03 80_[+2(5.74e-05)]_32 chr3R:14879318-14879438 7.62e-02 105_[+5(1.29e-05)]_7 chr3R:22420994-22421114 1.10e-03 39_[+1(5.63e-05)]_9_[+3(8.73e-06)]_\ 56 chr3L:18872638-18872758 8.26e-01 120 chr3R:30004748-30004868 1.03e-01 120 chr2R:22641164-22641284 2.64e-02 67_[+1(4.46e-05)]_45 chrX:12611570-12611690 1.45e-02 14_[+1(4.46e-05)]_98 chrX:637104-637224 3.36e-02 71_[+1(8.73e-06)]_41 chr2R:13996769-13996889 3.35e-01 120 chrX:625255-625375 8.29e-01 120 chr2L:2220672-2220792 6.84e-03 73_[+4(8.60e-06)]_39 chr2L:252298-252418 1.51e-02 120 chrX:7901836-7901956 5.50e-04 17_[+1(3.60e-05)]_61_[+1(8.73e-06)]_\ 26 chrX:1030639-1030759 6.81e-01 120 chr2L:17501098-17501218 8.27e-06 28_[+5(1.29e-05)]_12_[+2(2.87e-05)]_\ 64 chr2L:14355029-14355149 1.40e-05 20_[+1(3.60e-05)]_6_[+2(2.87e-05)]_\ 48_[+3(8.73e-06)]_22 chr3L:13046898-13047018 1.07e-01 120 chrX:5317345-5317465 2.74e-03 92_[+1(8.73e-06)]_20 chr2R:11893133-11893253 3.11e-01 120 chr2R:13952766-13952886 1.08e-02 35_[+1(8.73e-06)]_17_[+1(8.73e-06)]_\ 52 chr3L:20453405-20453525 1.24e-01 62_[+1(6.50e-05)]_50 chr3R:31310880-31311000 8.56e-03 77_[+1(5.63e-05)]_35 chrX:3573577-3573697 1.15e-03 23_[+5(4.33e-05)]_89 chr3L:21026038-21026158 5.70e-01 120 chr3L:12537244-12537364 8.64e-03 30_[+1(8.73e-06)]_82 chr3R:25627061-25627181 7.10e-01 120 chr2R:7589814-7589934 6.82e-01 120 chr3R:25074814-25074934 2.06e-04 25_[+2(2.87e-05)]_55_[+1(3.60e-05)]_\ 24 chr2L:493430-493550 9.53e-01 120 chr3R:4428987-4429107 7.06e-01 120 chr2R:17699009-17699129 1.49e-04 13_[+2(5.74e-05)]_41_[+4(2.72e-05)]_\ 2_[+1(5.63e-05)]_40 chr2R:24174737-24174857 7.55e-02 106_[+2(2.87e-05)]_6 chr2L:3029215-3029335 2.02e-01 120 chrX:13154888-13155008 4.72e-04 35_[+1(3.60e-05)]_52_[+2(7.66e-05)]_\ 17 chrX:1353977-1354097 3.61e-05 43_[+2(2.87e-05)]_9_[+3(8.10e-05)]_\ 4_[+1(1.45e-05)]_40 chr3R:4804088-4804208 5.51e-01 120 chr2L:22130042-22130162 4.51e-02 54_[+1(6.50e-05)]_58 chr2L:10299161-10299281 8.17e-01 120 chr2L:6907923-6908043 9.58e-01 120 chrX:4113730-4113850 2.89e-01 120 chr2R:10026746-10026866 8.02e-02 120 chr3R:23679959-23680079 2.77e-02 102_[+4(4.74e-05)]_10 chr3R:20592566-20592686 1.11e-03 68_[+1(2.74e-05)]_31_[+5(2.58e-05)]_\ 5 chr3L:21434005-21434125 9.20e-01 120 chr3L:12116253-12116373 6.30e-01 120 chr3R:20577050-20577170 8.93e-01 120 chr2L:203609-203729 6.37e-01 120 chr2R:12037201-12037321 8.98e-02 109_[+2(5.74e-05)]_3 chrX:8075414-8075534 4.12e-03 73_[+2(2.87e-05)]_39 chr2R:16951935-16952055 7.70e-01 120 chr2R:10810923-10811043 6.89e-03 3_[+1(2.74e-05)]_109 chr3R:31596128-31596248 8.20e-04 36_[+1(2.74e-05)]_45_[+3(8.73e-06)]_\ 23 chr2R:12870220-12870340 3.58e-02 62_[+1(8.73e-06)]_50 chr2L:182794-182914 4.86e-01 120 chr2L:6024461-6024581 8.79e-03 60_[+3(8.73e-06)]_52 chr2L:6343589-6343709 4.53e-01 120 chrX:19865726-19865846 7.54e-02 120 chr3R:16099055-16099175 3.02e-01 120 chr3R:21118963-21119083 7.13e-01 120 chr2L:9763415-9763535 1.35e-01 120 chr2R:16187564-16187684 1.14e-01 53_[+1(3.60e-05)]_59 chr3L:16602908-16603028 5.35e-01 120 chr3R:25265756-25265876 3.72e-02 91_[+1(8.73e-06)]_21 chr2L:20675966-20676086 2.50e-01 120 chr3L:12526471-12526591 9.04e-02 37_[+1(8.37e-05)]_75 chr2R:21097267-21097387 3.31e-04 60_[+2(2.87e-05)]_42_[+4(8.60e-06)]_\ 2 chr3R:11735453-11735573 5.01e-01 120 chrX:16446897-16447017 1.11e-02 101_[+2(2.87e-05)]_11 chr2L:18566784-18566904 9.50e-01 120 chrX:8720242-8720362 1.21e-02 11_[+1(8.73e-06)]_101 chr2L:8943218-8943338 1.96e-02 120 chr2R:10252374-10252494 4.05e-04 19_[+3(8.73e-06)]_36_[+2(2.87e-05)]_\ 49 chr2R:9847934-9848054 4.63e-01 120 chr3L:20520768-20520888 5.08e-01 120 chr3L:6173934-6174054 2.73e-03 2_[+2(5.74e-05)]_26_[+5(8.63e-05)]_\ 76 chr2R:24037766-24037886 2.95e-01 120 chr3L:17612403-17612523 5.39e-03 37_[+1(8.73e-06)]_75 chr3R:16614449-16614569 4.15e-01 120 chr3R:22462308-22462428 9.09e-01 120 chr3R:16263975-16264095 7.72e-01 120 chr3L:6606085-6606205 1.17e-01 107_[+4(9.05e-05)]_5 chrX:5420592-5420712 7.57e-03 8_[+1(2.74e-05)]_48_[+3(9.37e-05)]_\ 48 chr2R:16955231-16955351 8.33e-02 25_[+2(5.74e-05)]_34_[+2(5.74e-05)]_\ 45 chr2R:23573252-23573372 4.31e-03 36_[+1(8.37e-05)]_76 chr3L:15098113-15098233 4.04e-03 50_[+4(6.03e-05)]_42_[+1(5.63e-05)]_\ 12 chr2R:17536516-17536636 3.56e-01 120 chrX:1349433-1349553 9.34e-01 120 chr3L:19000584-19000704 1.37e-02 7_[+3(8.73e-06)]_105 chr3R:6406534-6406654 8.24e-01 120 chrX:19243463-19243583 5.93e-01 120 chr3R:6346001-6346121 2.13e-01 120 chr2R:21324017-21324137 3.67e-03 73_[+1(8.37e-05)]_39 chr2L:8511842-8511962 4.09e-02 13_[+2(2.87e-05)]_99 chr3R:14285157-14285277 1.87e-01 120 chr3R:8030744-8030864 1.49e-03 94_[+5(1.29e-05)]_10_[+1(8.37e-05)] chr3L:9546969-9547089 4.81e-03 69_[+1(8.73e-06)]_43 chr2R:12468584-12468704 2.08e-02 90_[+1(5.63e-05)]_22 chr3R:24585448-24585568 1.60e-02 85_[+5(5.62e-05)]_27 chr3R:11431721-11431841 9.31e-02 120 chr3R:24333299-24333419 1.33e-01 68_[+3(7.22e-05)]_44 chr3L:9511276-9511396 9.65e-01 120 chr2R:8631886-8632006 5.48e-01 120 chr3L:11285266-11285386 9.99e-01 120 chrX:1239942-1240062 5.60e-01 120 chr2L:10303888-10304008 9.28e-04 37_[+3(8.73e-06)]_21_[+2(7.66e-05)]_\ 46 chr3R:13645244-13645364 8.19e-01 120 chrX:10786276-10786396 8.50e-01 120 chr3R:17072639-17072759 2.74e-02 93_[+3(9.37e-05)]_19 chr2L:21102634-21102754 8.95e-01 120 chr2R:9251943-9252063 4.46e-02 77_[+5(1.29e-05)]_35 chr2R:12569842-12569962 1.27e-01 120 chr2R:18846689-18846809 5.69e-01 120 chr4:1053878-1053998 6.83e-01 120 chr3R:13964805-13964925 9.48e-04 71_[+4(1.43e-05)]_17_[+2(2.87e-05)]_\ 16 chr2R:17766917-17767037 8.78e-03 85_[+2(2.87e-05)]_27 chr2L:11091275-11091395 9.50e-01 120 chr3R:29131017-29131137 6.89e-01 120 chr2R:10196351-10196471 4.83e-01 120 chr3L:16419566-16419686 3.15e-02 100_[+4(8.60e-06)]_12 chr2L:21163552-21163672 8.91e-02 90_[+1(3.60e-05)]_22 chr2R:18451088-18451208 2.50e-01 120 chr3L:14071736-14071856 5.50e-03 72_[+5(2.58e-05)]_40 chr2L:10989348-10989468 2.10e-03 [+5(1.29e-05)]_112 chr2R:9971188-9971308 5.10e-01 120 chr2L:18707997-18708117 7.41e-02 120 chr2R:19437228-19437348 1.15e-02 6_[+3(8.73e-06)]_106 chr2L:7037967-7038087 9.74e-02 120 chr3L:21216807-21216927 5.79e-02 41_[+2(7.66e-05)]_71 chr3R:24318448-24318568 1.79e-02 26_[+2(5.74e-05)]_86 chr2R:15573888-15574008 8.51e-01 120 chr3L:5810837-5810957 2.05e-02 59_[+3(1.46e-05)]_53 chr3R:6007462-6007582 4.03e-01 120 chr2R:21659967-21660087 2.03e-03 31_[+3(5.49e-05)]_50_[+2(5.74e-05)]_\ 23 chr3R:29857475-29857595 9.17e-03 8_[+3(8.73e-06)]_104 chrX:9319238-9319358 1.20e-03 85_[+5(2.58e-05)]_27 chr2L:2217186-2217306 3.09e-04 33_[+2(2.87e-05)]_43_[+5(1.29e-05)]_\ 28 chr3R:21218745-21218865 4.89e-04 4_[+1(8.73e-06)]_6_[+3(1.46e-05)]_\ 94 chr3R:9039555-9039675 8.54e-01 120 chr3L:8604140-8604260 5.62e-02 120 chr2R:7566864-7566984 4.85e-02 59_[+1(3.60e-05)]_53 chr3R:24817130-24817250 9.93e-01 120 chrX:17627761-17627881 8.59e-02 106_[+3(1.46e-05)]_6 chr3R:8716150-8716270 6.37e-04 36_[+3(8.73e-06)]_61_[+4(7.76e-05)]_\ 7 chr3L:19552342-19552462 3.44e-02 98_[+1(1.45e-05)]_14 chrX:13757096-13757216 2.38e-02 65_[+2(2.87e-05)]_47 chr3L:16808329-16808449 3.78e-03 94_[+4(2.72e-05)]_18 chr3R:21073282-21073402 3.52e-03 49_[+5(8.63e-05)]_63 chr3R:9237603-9237723 6.06e-02 88_[+3(8.73e-06)]_24 chr3L:18672333-18672453 2.69e-01 120 chr3L:4282758-4282878 2.93e-02 74_[+1(1.45e-05)]_38 chr3L:19260486-19260606 2.49e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************