******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Mad.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:20634678-20634798 1.0000 120 chr2L:1362382-1362502 1.0000 120 chrX:15910093-15910213 1.0000 120 chrX:4649849-4649969 1.0000 120 chr2L:3029196-3029316 1.0000 120 chr2R:23942410-23942530 1.0000 120 chr2R:16202914-16203034 1.0000 120 chr2L:2357563-2357683 1.0000 120 chrX:20423932-20424052 1.0000 120 chr2R:24337655-24337775 1.0000 120 chr2R:15532248-15532368 1.0000 120 chr3L:4185441-4185561 1.0000 120 chr3L:2377565-2377685 1.0000 120 chr2R:11679319-11679439 1.0000 120 chr3R:10049090-10049210 1.0000 120 chr3R:10614155-10614275 1.0000 120 chr3R:23820402-23820522 1.0000 120 chr3R:15347951-15348071 1.0000 120 chr2R:14860738-14860858 1.0000 120 chr3R:23763089-23763209 1.0000 120 chrX:15986799-15986919 1.0000 120 chrX:18405153-18405273 1.0000 120 chr2L:3158685-3158805 1.0000 120 chrX:17229985-17230105 1.0000 120 chr2L:5542375-5542495 1.0000 120 chr2L:13367396-13367516 1.0000 120 chr3L:15794424-15794544 1.0000 120 chr2L:5771306-5771426 1.0000 120 chr3R:9335322-9335442 1.0000 120 chr3R:19164972-19165092 1.0000 120 chr2L:20675976-20676096 1.0000 120 chr2L:7566732-7566852 1.0000 120 chr2R:9251976-9252096 1.0000 120 chrX:17175901-17176021 1.0000 120 chr3R:23679956-23680076 1.0000 120 chr2R:11712225-11712345 1.0000 120 chr3R:18301707-18301827 1.0000 120 chrX:6663289-6663409 1.0000 120 chr3L:9505233-9505353 1.0000 120 chr3R:24318421-24318541 1.0000 120 chr2R:16505485-16505605 1.0000 120 chr3R:29076173-29076293 1.0000 120 chrX:8196314-8196434 1.0000 120 chr2R:11178538-11178658 1.0000 120 chr3L:5749861-5749981 1.0000 120 chr2R:25183126-25183246 1.0000 120 chrX:8900256-8900376 1.0000 120 chr3L:5899386-5899506 1.0000 120 chr2L:22130041-22130161 1.0000 120 chr2L:6971765-6971885 1.0000 120 chr2R:23668798-23668918 1.0000 120 chr2R:17412624-17412744 1.0000 120 chr3R:31805371-31805491 1.0000 120 chr3L:16768472-16768592 1.0000 120 chr2R:24132889-24133009 1.0000 120 chr3R:21703470-21703590 1.0000 120 chrX:10325999-10326119 1.0000 120 chr2L:4973760-4973880 1.0000 120 chr3R:30039631-30039751 1.0000 120 chr2L:3144812-3144932 1.0000 120 chr2R:21662363-21662483 1.0000 120 chr3R:27677206-27677326 1.0000 120 chr2L:7984128-7984248 1.0000 120 chr3L:5152515-5152635 1.0000 120 chrX:5329413-5329533 1.0000 120 chrX:20511572-20511692 1.0000 120 chr3R:23157857-23157977 1.0000 120 chr2L:4031446-4031566 1.0000 120 chr2L:10221029-10221149 1.0000 120 chrX:18515329-18515449 1.0000 120 chr3L:8176011-8176131 1.0000 120 chr2R:22508008-22508128 1.0000 120 chrX:17125026-17125146 1.0000 120 chr4:1230707-1230827 1.0000 120 chr2L:1614173-1614293 1.0000 120 chr2L:10970274-10970394 1.0000 120 chrX:19601797-19601917 1.0000 120 chr3R:15792556-15792676 1.0000 120 chr2L:11829380-11829500 1.0000 120 chr2R:12140535-12140655 1.0000 120 chr3R:16655772-16655892 1.0000 120 chr3R:7082047-7082167 1.0000 120 chr3R:11628534-11628654 1.0000 120 chr3R:10626220-10626340 1.0000 120 chr3L:1947646-1947766 1.0000 120 chrX:18774906-18775026 1.0000 120 chr3R:30004827-30004947 1.0000 120 chr2R:6749159-6749279 1.0000 120 chrX:15653641-15653761 1.0000 120 chr2L:20734287-20734407 1.0000 120 chr3R:15330639-15330759 1.0000 120 chr2R:19446231-19446351 1.0000 120 chr2L:3106117-3106237 1.0000 120 chr3R:10350087-10350207 1.0000 120 chr3L:361367-361487 1.0000 120 chr3L:20731120-20731240 1.0000 120 chr2R:17766958-17767078 1.0000 120 chr3R:5282830-5282950 1.0000 120 chr2R:11397360-11397480 1.0000 120 chrX:6110020-6110140 1.0000 120 chr2R:17062632-17062752 1.0000 120 chr4:210108-210228 1.0000 120 chrX:796347-796467 1.0000 120 chr2R:11970313-11970433 1.0000 120 chrX:23013424-23013544 1.0000 120 chr3L:22872184-22872304 1.0000 120 chr3L:5813168-5813288 1.0000 120 chr3R:8349570-8349690 1.0000 120 chr2L:2999216-2999336 1.0000 120 chr2R:17590845-17590965 1.0000 120 chrX:15462561-15462681 1.0000 120 chrX:12029007-12029127 1.0000 120 chr3R:10893546-10893666 1.0000 120 chr2R:14411710-14411830 1.0000 120 chr3R:31221168-31221288 1.0000 120 chr3L:8440932-8441052 1.0000 120 chr3R:15666098-15666218 1.0000 120 chr2L:18859255-18859375 1.0000 120 chr3L:199262-199382 1.0000 120 chr2L:12546586-12546706 1.0000 120 chr2L:11338325-11338445 1.0000 120 chr2R:7955865-7955985 1.0000 120 chr2L:4403140-4403260 1.0000 120 chr2L:14234000-14234120 1.0000 120 chrX:947665-947785 1.0000 120 chr2L:20821891-20822011 1.0000 120 chr3L:745621-745741 1.0000 120 chr3L:4553516-4553636 1.0000 120 chr2R:16731270-16731390 1.0000 120 chr3R:13052041-13052161 1.0000 120 chr2L:3173035-3173155 1.0000 120 chr2R:6157408-6157528 1.0000 120 chr2R:6015744-6015864 1.0000 120 chr3R:11581510-11581630 1.0000 120 chr3R:23293533-23293653 1.0000 120 chr2R:13968173-13968293 1.0000 120 chr2L:3444948-3445068 1.0000 120 chrX:8606285-8606405 1.0000 120 chr3R:8716185-8716305 1.0000 120 chr3L:8720151-8720271 1.0000 120 chr3R:14659607-14659727 1.0000 120 chrX:19153393-19153513 1.0000 120 chr2R:23697864-23697984 1.0000 120 chr2L:13878976-13879096 1.0000 120 chr2R:14913334-14913454 1.0000 120 chr3R:20593000-20593120 1.0000 120 chrX:11108272-11108392 1.0000 120 chr3R:8744329-8744449 1.0000 120 chr3R:21187091-21187211 1.0000 120 chr3L:3197615-3197735 1.0000 120 chrX:15063812-15063932 1.0000 120 chr3R:17540250-17540370 1.0000 120 chr2L:9494846-9494966 1.0000 120 chr3L:21196729-21196849 1.0000 120 chr3R:12350604-12350724 1.0000 120 chr2L:6907829-6907949 1.0000 120 chr3L:11681897-11682017 1.0000 120 chr3R:30052561-30052681 1.0000 120 chrX:8720328-8720448 1.0000 120 chr3L:6264597-6264717 1.0000 120 chr3L:13356211-13356331 1.0000 120 chr2R:7636596-7636716 1.0000 120 chrX:1890105-1890225 1.0000 120 chr2R:9578010-9578130 1.0000 120 chr2R:22374997-22375117 1.0000 120 chr2L:11091219-11091339 1.0000 120 chr3L:16955332-16955452 1.0000 120 chrX:6695020-6695140 1.0000 120 chr2R:9092996-9093116 1.0000 120 chr2L:3477297-3477417 1.0000 120 chr3L:16808260-16808380 1.0000 120 chr2R:5122231-5122351 1.0000 120 chrX:16683959-16684079 1.0000 120 chr3R:30812634-30812754 1.0000 120 chr3R:24518184-24518304 1.0000 120 chr2L:19935262-19935382 1.0000 120 chr2L:15751079-15751199 1.0000 120 chr3L:19910225-19910345 1.0000 120 chrX:8141512-8141632 1.0000 120 chr3L:15968015-15968135 1.0000 120 chr2L:21237113-21237233 1.0000 120 chr2R:13008296-13008416 1.0000 120 chr2L:203644-203764 1.0000 120 chr2R:12173490-12173610 1.0000 120 chr3R:22041880-22042000 1.0000 120 chr2L:901634-901754 1.0000 120 chr2R:10782828-10782948 1.0000 120 chr3L:6059211-6059331 1.0000 120 chr2L:2729998-2730118 1.0000 120 chr2L:7339761-7339881 1.0000 120 chr2L:21156242-21156362 1.0000 120 chr2R:20832550-20832670 1.0000 120 chr3R:25004881-25005001 1.0000 120 chr3L:8399223-8399343 1.0000 120 chr3R:22039601-22039721 1.0000 120 chr3R:18274437-18274557 1.0000 120 chrX:13755357-13755477 1.0000 120 chr3L:5926134-5926254 1.0000 120 chr3R:5588250-5588370 1.0000 120 chrX:4322698-4322818 1.0000 120 chr2R:23940178-23940298 1.0000 120 chr2L:10767896-10768016 1.0000 120 chr2R:24086558-24086678 1.0000 120 chrX:9319245-9319365 1.0000 120 chr3R:18242128-18242248 1.0000 120 chr3R:22421091-22421211 1.0000 120 chr3R:30889034-30889154 1.0000 120 chr2L:8511898-8512018 1.0000 120 chr2L:19377426-19377546 1.0000 120 chr2R:18802260-18802380 1.0000 120 chr3R:29556265-29556385 1.0000 120 chr2L:8602764-8602884 1.0000 120 chr3R:26566916-26567036 1.0000 120 chr2R:17683509-17683629 1.0000 120 chr3R:29591692-29591812 1.0000 120 chrX:6524384-6524504 1.0000 120 chr3R:15147444-15147564 1.0000 120 chr2R:14906645-14906765 1.0000 120 chr3R:20948122-20948242 1.0000 120 chr3L:13044399-13044519 1.0000 120 chr3L:19000631-19000751 1.0000 120 chr2L:7632923-7633043 1.0000 120 chrX:1944340-1944460 1.0000 120 chr3L:15999703-15999823 1.0000 120 chr2L:6797564-6797684 1.0000 120 chr3R:4387603-4387723 1.0000 120 chr2R:17726836-17726956 1.0000 120 chr2R:23176723-23176843 1.0000 120 chr3R:23733156-23733276 1.0000 120 chr3R:26937644-26937764 1.0000 120 chrX:20257377-20257497 1.0000 120 chr3L:15142475-15142595 1.0000 120 chr2R:11279834-11279954 1.0000 120 chr2L:5044011-5044131 1.0000 120 chrX:2149678-2149798 1.0000 120 chr3R:23922964-23923084 1.0000 120 chrX:13128812-13128932 1.0000 120 chr2L:2037609-2037729 1.0000 120 chr2R:24024126-24024246 1.0000 120 chr2L:2857085-2857205 1.0000 120 chr4:867087-867207 1.0000 120 chr3R:10696568-10696688 1.0000 120 chr3L:642902-643022 1.0000 120 chr2L:10989319-10989439 1.0000 120 chr2R:10142321-10142441 1.0000 120 chr3R:20830500-20830620 1.0000 120 chr2R:11359208-11359328 1.0000 120 chr2L:15060766-15060886 1.0000 120 chr2L:22536592-22536712 1.0000 120 chrX:17738324-17738444 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Mad/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Mad.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.298 C 0.208 G 0.207 T 0.287 Background letter frequencies (from file dataset with add-one prior applied): A 0.298 C 0.208 G 0.207 T 0.287 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ATCGATAG MEME-1 width = 8 sites = 33 llr = 314 E-value = 9.5e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATCGATAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A a:::a:a1 pos.-specific C :1a::::: probability G :::a:::6 matrix T :9:::a:3 bits 2.3 ** 2.0 ** 1.8 * ***** 1.6 * ***** Relative 1.4 ******* Entropy 1.1 ******* (13.7 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATCGATAG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17738324-17738444 3 1.94e-05 TA ATCGATAG CGACAAAAAC chr2L:2857085-2857205 46 1.94e-05 TGCATAGGTA ATCGATAG TGCAATCGAT chr2R:24024126-24024246 33 1.94e-05 TAAGAATGTT ATCGATAG GCGAGAAGCA chr3L:13044399-13044519 22 1.94e-05 CGCCCCCAGC ATCGATAG AACGGCCGCT chr3R:29591692-29591812 97 1.94e-05 TTCGGTTGCT ATCGATAG CCAATAGCTC chr3R:18274437-18274557 27 1.94e-05 GATGATAGAT ATCGATAG CTTTAGCGGT chr3R:24518184-24518304 67 1.94e-05 tggataggca atcgatag gcaatcgaCT chrX:6695020-6695140 6 1.94e-05 GATAC ATCGATAG TTGAGCAGGC chr2R:22374997-22375117 53 1.94e-05 GCCCTAGCAT ATCGATAG CACGTAGCGA chr3R:12350604-12350724 87 1.94e-05 AGCGATAGGT ATCGATAG CGAGGTCAGA chrX:12029007-12029127 83 1.94e-05 TCACGCGACT ATCGATAG CTACCAGGGC chr2L:2999216-2999336 12 1.94e-05 AACACAAACA ATCGATAG TCGACAGCAC chr2R:6749159-6749279 53 1.94e-05 TCTAGCGCCT ATCGATAG ACCTCCATGC chr3R:18301707-18301827 86 1.94e-05 GTCGATAAGA ATCGATAG TTCAAATTTT chrX:20423932-20424052 104 1.94e-05 TAATGCTTAT ATCGATAG CACTTTTGC chrX:4649849-4649969 12 1.94e-05 AACCGTTTCT ATCGATAG TTGTGTAGCA chr3R:20634678-20634798 87 1.94e-05 GCTGGTTAAT ATCGATAG TGTTTCATTC chr2R:24086558-24086678 8 4.64e-05 Catcgat atcgatat ctgtgtctct chr3L:16955332-16955452 103 4.64e-05 TGTAAAAATA ATCGATAT CTGGCACAAA chrX:8606285-8606405 70 4.64e-05 CGCTCGATAG ATCGATAT AATGTGCATC chr3R:13052041-13052161 7 4.64e-05 ACACAT ATCGATAT TCGTTTTTTT chr2L:4403140-4403260 84 4.64e-05 GACAGCTGTC ATCGATAT GTAATCGATA chrX:23013424-23013544 60 4.64e-05 GTGTCGATGA ATCGATAT TTTGCACGTT chr2R:17766958-17767078 46 4.64e-05 CGAGACAACT ATCGATAT GTTTCTGGAT chr3R:16655772-16655892 41 4.64e-05 atcaatatct atcgatat cgcagaaaaa chrX:19601797-19601917 37 4.64e-05 CCACGGCAGT ATCGATAT ATCGAGCACG chrX:9319245-9319365 1 8.84e-05 . ACCGATAG GCCTTTCGAT chr3R:11581510-11581630 47 8.84e-05 TCTACAAAGT ATCGATAA CTTCAGCGAC chr2R:19446231-19446351 102 8.84e-05 AGTGTTGTCA ATCGATAA ATTATCGATT chr3L:1947646-1947766 61 8.84e-05 ATAGTGATAT ACCGATAG TCCATTGTTT chr3R:23157857-23157977 50 8.84e-05 GTCGATTGAT ATCGATAA TTTTTGTCGG chr3L:5152515-5152635 113 8.84e-05 ATGCTCGATA ACCGATAG chr2L:3144812-3144932 60 8.84e-05 CGTTGGAGCA ATCGATAA CTCCCGGGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17738324-17738444 1.9e-05 2_[+1]_110 chr2L:2857085-2857205 1.9e-05 45_[+1]_67 chr2R:24024126-24024246 1.9e-05 32_[+1]_80 chr3L:13044399-13044519 1.9e-05 21_[+1]_91 chr3R:29591692-29591812 1.9e-05 96_[+1]_16 chr3R:18274437-18274557 1.9e-05 26_[+1]_86 chr3R:24518184-24518304 1.9e-05 66_[+1]_46 chrX:6695020-6695140 1.9e-05 5_[+1]_107 chr2R:22374997-22375117 1.9e-05 52_[+1]_60 chr3R:12350604-12350724 1.9e-05 86_[+1]_26 chrX:12029007-12029127 1.9e-05 82_[+1]_30 chr2L:2999216-2999336 1.9e-05 11_[+1]_101 chr2R:6749159-6749279 1.9e-05 52_[+1]_60 chr3R:18301707-18301827 1.9e-05 85_[+1]_27 chrX:20423932-20424052 1.9e-05 103_[+1]_9 chrX:4649849-4649969 1.9e-05 11_[+1]_101 chr3R:20634678-20634798 1.9e-05 86_[+1]_26 chr2R:24086558-24086678 4.6e-05 7_[+1]_105 chr3L:16955332-16955452 4.6e-05 102_[+1]_10 chrX:8606285-8606405 4.6e-05 69_[+1]_43 chr3R:13052041-13052161 4.6e-05 6_[+1]_106 chr2L:4403140-4403260 4.6e-05 83_[+1]_29 chrX:23013424-23013544 4.6e-05 59_[+1]_53 chr2R:17766958-17767078 4.6e-05 45_[+1]_67 chr3R:16655772-16655892 4.6e-05 40_[+1]_72 chrX:19601797-19601917 4.6e-05 36_[+1]_76 chrX:9319245-9319365 8.8e-05 [+1]_112 chr3R:11581510-11581630 8.8e-05 46_[+1]_66 chr2R:19446231-19446351 8.8e-05 101_[+1]_11 chr3L:1947646-1947766 8.8e-05 60_[+1]_52 chr3R:23157857-23157977 8.8e-05 49_[+1]_63 chr3L:5152515-5152635 8.8e-05 112_[+1] chr2L:3144812-3144932 8.8e-05 59_[+1]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATCGATAG width=8 seqs=33 chrX:17738324-17738444 ( 3) ATCGATAG 1 chr2L:2857085-2857205 ( 46) ATCGATAG 1 chr2R:24024126-24024246 ( 33) ATCGATAG 1 chr3L:13044399-13044519 ( 22) ATCGATAG 1 chr3R:29591692-29591812 ( 97) ATCGATAG 1 chr3R:18274437-18274557 ( 27) ATCGATAG 1 chr3R:24518184-24518304 ( 67) ATCGATAG 1 chrX:6695020-6695140 ( 6) ATCGATAG 1 chr2R:22374997-22375117 ( 53) ATCGATAG 1 chr3R:12350604-12350724 ( 87) ATCGATAG 1 chrX:12029007-12029127 ( 83) ATCGATAG 1 chr2L:2999216-2999336 ( 12) ATCGATAG 1 chr2R:6749159-6749279 ( 53) ATCGATAG 1 chr3R:18301707-18301827 ( 86) ATCGATAG 1 chrX:20423932-20424052 ( 104) ATCGATAG 1 chrX:4649849-4649969 ( 12) ATCGATAG 1 chr3R:20634678-20634798 ( 87) ATCGATAG 1 chr2R:24086558-24086678 ( 8) ATCGATAT 1 chr3L:16955332-16955452 ( 103) ATCGATAT 1 chrX:8606285-8606405 ( 70) ATCGATAT 1 chr3R:13052041-13052161 ( 7) ATCGATAT 1 chr2L:4403140-4403260 ( 84) ATCGATAT 1 chrX:23013424-23013544 ( 60) ATCGATAT 1 chr2R:17766958-17767078 ( 46) ATCGATAT 1 chr3R:16655772-16655892 ( 41) ATCGATAT 1 chrX:19601797-19601917 ( 37) ATCGATAT 1 chrX:9319245-9319365 ( 1) ACCGATAG 1 chr3R:11581510-11581630 ( 47) ATCGATAA 1 chr2R:19446231-19446351 ( 102) ATCGATAA 1 chr3L:1947646-1947766 ( 61) ACCGATAG 1 chr3R:23157857-23157977 ( 50) ATCGATAA 1 chr3L:5152515-5152635 ( 113) ACCGATAG 1 chr2L:3144812-3144932 ( 60) ATCGATAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.507 E= 9.5e-012 175 -1169 -1169 -1169 -1169 -119 -1169 166 -1169 226 -1169 -1169 -1169 -1169 227 -1169 175 -1169 -1169 -1169 -1169 -1169 -1169 180 175 -1169 -1169 -1169 -130 -1169 155 -7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 9.5e-012 1.000000 0.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.909091 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.121212 0.000000 0.606061 0.272727 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAG MEME-1 regular expression -------------------------------------------------------------------------------- ATCGATA[GT] -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCRVCR MEME-2 width = 8 sites = 67 llr = 527 E-value = 5.6e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCRVCR MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::44:6 pos.-specific C ::2a23a2 probability G :a8:33:3 matrix T a:::1::: bits 2.3 * * * 2.0 * * * 1.8 ** * * 1.6 **** * Relative 1.4 **** * Entropy 1.1 **** * (11.3 bits) 0.9 **** * 0.7 **** * 0.5 **** *** 0.2 ******** 0.0 -------- Multilevel TGGCAACA consensus C GG G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCRVCR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17726836-17726956 72 1.66e-05 CGATTACACT TGGCGGCA AACAGCTGTG chrX:19601797-19601917 90 1.66e-05 TATGGACTTT TGGCGGCA GGGTTGTCTA chr2R:17412624-17412744 110 1.66e-05 TCGAATAATG TGGCAGCA CTA chr2L:3158685-3158805 40 1.66e-05 TGGGCATCAC TGGCGGCA ACGGTTCTGA chr2R:16202914-16203034 94 1.66e-05 CGCTAAAAGT TGGCAGCA CGGCCAGGGG chr3L:19000631-19000751 103 5.71e-05 ATAACACACT TGGCGCCA AATTCGAAAC chr3R:26566916-26567036 10 5.71e-05 TCTCCAGAA TGGCACCA AGTTAGCTGA chr3L:19910225-19910345 58 5.71e-05 ACGGTCACAC TGGCGACA TGACAACCCT chr3L:16955332-16955452 31 5.71e-05 TCTTCCACAG TGGCGCCA TCTGCAGTCG chr2R:9578010-9578130 70 5.71e-05 GTTGTCGGTT TGGCAACA CTAAACCCCC chr3L:6264597-6264717 6 5.71e-05 TTTAC TGGCGCCA TCTAGGGCCT chr2R:13968173-13968293 46 5.71e-05 TTCCGGCAGA TGGCGCCA GGTGGTTATC chrX:6110020-6110140 84 5.71e-05 GGACGCCAGG TGGCGCCA CACATGTAGT chr3R:15330639-15330759 58 5.71e-05 TAATCATATC TGGCAACA CTGCAAACTG chr3R:23679956-23680076 12 5.71e-05 CGCCCAGCAG TGGCGCCA TCTATGACAG chr3L:2377565-2377685 35 5.71e-05 TTTCGCAGTC TGGCACCA GACTCACCAT chr2R:24337655-24337775 101 5.71e-05 GCTTGTCAGT TGGCGCCA ATTCATGCAA chrX:4649849-4649969 109 5.71e-05 TCTGCGCATA TGGCGCCA AAGA chr2L:1362382-1362502 23 5.71e-05 ATTCCGTTTG TGGCGCCA TCTCTTCGCA chr2R:17683509-17683629 97 6.86e-05 CACTAAGGTA TGGCAGCG CCGTAAGTTC chr2R:19446231-19446351 83 6.86e-05 TTGGCGTCCC TGGCAGCG CAGTGTTGTC chrX:6524384-6524504 95 1.04e-04 CGCGGCCGCA TGGCCGCA CTAAAAACGC chr2R:12173490-12173610 67 1.04e-04 GCAAAGAACG TGGCAACG CTGCAGGCGG chr2L:203644-203764 82 1.04e-04 CTCGACGAGG TGGCAACG CTAGCCGGCG chr2L:21237113-21237233 93 1.04e-04 CGCAGAAAGG TGGCAACG CTCGCTAACA chr3R:12350604-12350724 54 1.04e-04 CGCCACCTAC TGGCCGCA AGCTCACATC chrX:15063812-15063932 66 1.04e-04 CATCGCGAAC TGGCAACG CTGTCAGCAG chr3R:20593000-20593120 109 1.04e-04 GCCGTCGTAC TGGCAACG CCGA chr3R:10893546-10893666 81 1.04e-04 GTGAAATGGC TGGCAACG CTAGCATGGA chr3L:5899386-5899506 38 1.04e-04 TATTTTGAAA TGGCGCCG ATAGACTGAT chr2L:3029196-3029316 34 1.04e-04 TAAATCAAGC TGGCAACG CAAAGGACAG chr2L:2037609-2037729 92 1.20e-04 GCGCACTGAG TGGCCACA TCAGTTGTAT chr3R:15147444-15147564 57 1.20e-04 TCGCTGTTGT TGGCCACA CGaaacaaaa chr3R:30052561-30052681 87 1.20e-04 GCTCTTGAGC TGGCCACA CTGTCGATCG chr3R:8716185-8716305 70 1.20e-04 TACTCGCCCA TGGCCACA TTTGTGCATG chr3R:31221168-31221288 86 1.20e-04 AGTGCTGACC TGGCCACA CTGACCAGCC chr2R:11679319-11679439 8 1.20e-04 GTCAGTG TGGCCACA CCAAAACAAG chr2R:11279834-11279954 6 1.48e-04 TGATT TGGCAGCC ATTGCAGATC chr3R:22421091-22421211 45 1.48e-04 TTTAACAGGC TGGCCACG TTGATAGCCT chr3L:21196729-21196849 65 1.48e-04 AAACACCAGC TGGCAGCC ATTCGGAGGA chr2R:9251976-9252096 31 1.48e-04 TGCGCGCAGT TGGCAGCC CTTCGCAACA chr3R:30004827-30004947 111 1.76e-04 TACGTCGGCC TGGCAACC CT chr3L:1947646-1947766 107 1.76e-04 CACGTGCACC TGGCAACC CTGTGC chr3R:10049090-10049210 28 1.76e-04 GAGTCTATTT TGGCGCCC AACTACCGAA chr3R:30889034-30889154 31 1.98e-04 GTCTGTAGTG TGGCCGCC GTCTGTTTCG chr2L:19377426-19377546 70 2.50e-04 GCGATGGCGG TGCCGACA CAACAAAGGA chrX:8606285-8606405 37 2.50e-04 GGTTGCGCTT TGCCGCCA ATAGATCCGA chr2L:11829380-11829500 62 2.50e-04 TTGCGCAGCG TGGCCACC TGGTCACGAT chr2L:4973760-4973880 4 2.50e-04 aat tgccgaca gcataaattt chr3L:5749861-5749981 98 2.50e-04 ACATTTTGAT TGCCACCA CGTGAAATCT chr3L:9505233-9505353 5 2.50e-04 ATAA TGCCAACA GTTTGGGCAG chr2L:7632923-7633043 46 2.60e-04 ACAAATGATT TGGCTGCA AGCATTGCGT chr2L:7339761-7339881 64 2.60e-04 GAGTCGGGGA TGGCTGCA ACCTGACTCA chr3L:15999703-15999823 91 2.94e-04 CAAGTGTCAA TGGCTACA GTAAATATTG chr2L:19935262-19935382 8 2.94e-04 ATCCGAC TGCCAGCG GAGCAgcacg chr2L:11338325-11338445 6 2.94e-04 ACGCG TGGCTACA CTGGAAGAAA chr2R:11712225-11712345 72 2.94e-04 TGTAGATCGC TGCCAGCG GAAGCAACGG chrX:19153393-19153513 93 3.29e-04 gaacgatcgt tgccgccg gcgaaggaga chr3L:745621-745741 4 3.29e-04 TTC TGCCGCCG TTTTCACTGC chr3L:22872184-22872304 1 3.29e-04 . TGCCAACG ATTTGGATTA chr3R:20830500-20830620 48 3.53e-04 TACTCTCTGC TGGCTGCG CTCGACCAGC chr3R:15347951-15348071 91 3.53e-04 TCGTGCTGAA TGGCTGCG AGAAAGAAGA chr3L:4185441-4185561 108 3.53e-04 CTCGTTTCCC TGCCCACA ACCGC chr3R:7082047-7082167 78 3.73e-04 TGGCCCACAG TGCCCGCG AGTTTCAGTA chr2R:22374997-22375117 38 3.97e-04 CGATTACTGT TGCCAGCC CTAGCATATC chr2R:17590845-17590965 71 4.25e-04 TCCTAGTTAT TGCCACCC TTGCCAGACT chrX:15910093-15910213 17 4.25e-04 GCTAGGGCGT TGCCACCC TGCATTCATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCRVCR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17726836-17726956 1.7e-05 71_[+2]_41 chrX:19601797-19601917 1.7e-05 89_[+2]_23 chr2R:17412624-17412744 1.7e-05 109_[+2]_3 chr2L:3158685-3158805 1.7e-05 39_[+2]_73 chr2R:16202914-16203034 1.7e-05 93_[+2]_19 chr3L:19000631-19000751 5.7e-05 102_[+2]_10 chr3R:26566916-26567036 5.7e-05 9_[+2]_103 chr3L:19910225-19910345 5.7e-05 57_[+2]_55 chr3L:16955332-16955452 5.7e-05 30_[+2]_82 chr2R:9578010-9578130 5.7e-05 69_[+2]_43 chr3L:6264597-6264717 5.7e-05 5_[+2]_107 chr2R:13968173-13968293 5.7e-05 45_[+2]_67 chrX:6110020-6110140 5.7e-05 83_[+2]_29 chr3R:15330639-15330759 5.7e-05 57_[+2]_55 chr3R:23679956-23680076 5.7e-05 11_[+2]_101 chr3L:2377565-2377685 5.7e-05 34_[+2]_78 chr2R:24337655-24337775 5.7e-05 100_[+2]_12 chrX:4649849-4649969 5.7e-05 108_[+2]_4 chr2L:1362382-1362502 5.7e-05 22_[+2]_90 chr2R:17683509-17683629 6.9e-05 96_[+2]_16 chr2R:19446231-19446351 6.9e-05 82_[+2]_30 chrX:6524384-6524504 0.0001 94_[+2]_18 chr2R:12173490-12173610 0.0001 66_[+2]_46 chr2L:203644-203764 0.0001 81_[+2]_31 chr2L:21237113-21237233 0.0001 92_[+2]_20 chr3R:12350604-12350724 0.0001 53_[+2]_59 chrX:15063812-15063932 0.0001 65_[+2]_47 chr3R:20593000-20593120 0.0001 108_[+2]_4 chr3R:10893546-10893666 0.0001 80_[+2]_32 chr3L:5899386-5899506 0.0001 37_[+2]_75 chr2L:3029196-3029316 0.0001 33_[+2]_79 chr2L:2037609-2037729 0.00012 91_[+2]_21 chr3R:15147444-15147564 0.00012 56_[+2]_56 chr3R:30052561-30052681 0.00012 86_[+2]_26 chr3R:8716185-8716305 0.00012 69_[+2]_43 chr3R:31221168-31221288 0.00012 85_[+2]_27 chr2R:11679319-11679439 0.00012 7_[+2]_105 chr2R:11279834-11279954 0.00015 5_[+2]_107 chr3R:22421091-22421211 0.00015 44_[+2]_68 chr3L:21196729-21196849 0.00015 64_[+2]_48 chr2R:9251976-9252096 0.00015 30_[+2]_82 chr3R:30004827-30004947 0.00018 110_[+2]_2 chr3L:1947646-1947766 0.00018 106_[+2]_6 chr3R:10049090-10049210 0.00018 27_[+2]_85 chr3R:30889034-30889154 0.0002 30_[+2]_82 chr2L:19377426-19377546 0.00025 69_[+2]_43 chrX:8606285-8606405 0.00025 36_[+2]_76 chr2L:11829380-11829500 0.00025 61_[+2]_51 chr2L:4973760-4973880 0.00025 3_[+2]_109 chr3L:5749861-5749981 0.00025 97_[+2]_15 chr3L:9505233-9505353 0.00025 4_[+2]_108 chr2L:7632923-7633043 0.00026 45_[+2]_67 chr2L:7339761-7339881 0.00026 63_[+2]_49 chr3L:15999703-15999823 0.00029 90_[+2]_22 chr2L:19935262-19935382 0.00029 7_[+2]_105 chr2L:11338325-11338445 0.00029 5_[+2]_107 chr2R:11712225-11712345 0.00029 71_[+2]_41 chrX:19153393-19153513 0.00033 92_[+2]_20 chr3L:745621-745741 0.00033 3_[+2]_109 chr3L:22872184-22872304 0.00033 [+2]_112 chr3R:20830500-20830620 0.00035 47_[+2]_65 chr3R:15347951-15348071 0.00035 90_[+2]_22 chr3L:4185441-4185561 0.00035 107_[+2]_5 chr3R:7082047-7082167 0.00037 77_[+2]_35 chr2R:22374997-22375117 0.0004 37_[+2]_75 chr2R:17590845-17590965 0.00043 70_[+2]_42 chrX:15910093-15910213 0.00043 16_[+2]_96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCRVCR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCRVCR width=8 seqs=67 chr2R:17726836-17726956 ( 72) TGGCGGCA 1 chrX:19601797-19601917 ( 90) TGGCGGCA 1 chr2R:17412624-17412744 ( 110) TGGCAGCA 1 chr2L:3158685-3158805 ( 40) TGGCGGCA 1 chr2R:16202914-16203034 ( 94) TGGCAGCA 1 chr3L:19000631-19000751 ( 103) TGGCGCCA 1 chr3R:26566916-26567036 ( 10) TGGCACCA 1 chr3L:19910225-19910345 ( 58) TGGCGACA 1 chr3L:16955332-16955452 ( 31) TGGCGCCA 1 chr2R:9578010-9578130 ( 70) TGGCAACA 1 chr3L:6264597-6264717 ( 6) TGGCGCCA 1 chr2R:13968173-13968293 ( 46) TGGCGCCA 1 chrX:6110020-6110140 ( 84) TGGCGCCA 1 chr3R:15330639-15330759 ( 58) TGGCAACA 1 chr3R:23679956-23680076 ( 12) TGGCGCCA 1 chr3L:2377565-2377685 ( 35) TGGCACCA 1 chr2R:24337655-24337775 ( 101) TGGCGCCA 1 chrX:4649849-4649969 ( 109) TGGCGCCA 1 chr2L:1362382-1362502 ( 23) TGGCGCCA 1 chr2R:17683509-17683629 ( 97) TGGCAGCG 1 chr2R:19446231-19446351 ( 83) TGGCAGCG 1 chrX:6524384-6524504 ( 95) TGGCCGCA 1 chr2R:12173490-12173610 ( 67) TGGCAACG 1 chr2L:203644-203764 ( 82) TGGCAACG 1 chr2L:21237113-21237233 ( 93) TGGCAACG 1 chr3R:12350604-12350724 ( 54) TGGCCGCA 1 chrX:15063812-15063932 ( 66) TGGCAACG 1 chr3R:20593000-20593120 ( 109) TGGCAACG 1 chr3R:10893546-10893666 ( 81) TGGCAACG 1 chr3L:5899386-5899506 ( 38) TGGCGCCG 1 chr2L:3029196-3029316 ( 34) TGGCAACG 1 chr2L:2037609-2037729 ( 92) TGGCCACA 1 chr3R:15147444-15147564 ( 57) TGGCCACA 1 chr3R:30052561-30052681 ( 87) TGGCCACA 1 chr3R:8716185-8716305 ( 70) TGGCCACA 1 chr3R:31221168-31221288 ( 86) TGGCCACA 1 chr2R:11679319-11679439 ( 8) TGGCCACA 1 chr2R:11279834-11279954 ( 6) TGGCAGCC 1 chr3R:22421091-22421211 ( 45) TGGCCACG 1 chr3L:21196729-21196849 ( 65) TGGCAGCC 1 chr2R:9251976-9252096 ( 31) TGGCAGCC 1 chr3R:30004827-30004947 ( 111) TGGCAACC 1 chr3L:1947646-1947766 ( 107) TGGCAACC 1 chr3R:10049090-10049210 ( 28) TGGCGCCC 1 chr3R:30889034-30889154 ( 31) TGGCCGCC 1 chr2L:19377426-19377546 ( 70) TGCCGACA 1 chrX:8606285-8606405 ( 37) TGCCGCCA 1 chr2L:11829380-11829500 ( 62) TGGCCACC 1 chr2L:4973760-4973880 ( 4) TGCCGACA 1 chr3L:5749861-5749981 ( 98) TGCCACCA 1 chr3L:9505233-9505353 ( 5) TGCCAACA 1 chr2L:7632923-7633043 ( 46) TGGCTGCA 1 chr2L:7339761-7339881 ( 64) TGGCTGCA 1 chr3L:15999703-15999823 ( 91) TGGCTACA 1 chr2L:19935262-19935382 ( 8) TGCCAGCG 1 chr2L:11338325-11338445 ( 6) TGGCTACA 1 chr2R:11712225-11712345 ( 72) TGCCAGCG 1 chrX:19153393-19153513 ( 93) TGCCGCCG 1 chr3L:745621-745741 ( 4) TGCCGCCG 1 chr3L:22872184-22872304 ( 1) TGCCAACG 1 chr3R:20830500-20830620 ( 48) TGGCTGCG 1 chr3R:15347951-15348071 ( 91) TGGCTGCG 1 chr3L:4185441-4185561 ( 108) TGCCCACA 1 chr3R:7082047-7082167 ( 78) TGCCCGCG 1 chr2R:22374997-22375117 ( 38) TGCCAGCC 1 chr2R:17590845-17590965 ( 71) TGCCACCC 1 chrX:15910093-15910213 ( 17) TGCCACCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCRVCR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4775 E= 5.6e-011 -1271 -1271 -1271 180 -1271 -1271 227 -1271 -1271 11 190 -1271 -1271 226 -1271 -1271 49 -10 53 -168 44 45 60 -1271 -1271 226 -1271 -1271 89 -34 45 -1271 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCRVCR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 67 E= 5.6e-011 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.223881 0.776119 0.000000 0.000000 1.000000 0.000000 0.000000 0.417910 0.194030 0.298507 0.089552 0.402985 0.283582 0.313433 0.000000 0.000000 1.000000 0.000000 0.000000 0.552239 0.164179 0.283582 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCRVCR MEME-2 regular expression -------------------------------------------------------------------------------- TG[GC]C[AG][AGC]C[AG] -------------------------------------------------------------------------------- Time 13.66 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTKRCC MEME-3 width = 8 sites = 30 llr = 270 E-value = 3.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::3:1 pos.-specific C :::3::a9 probability G a2a:67:: matrix T :8:74::: bits 2.3 * * * 2.0 * * * 1.8 * * * 1.6 * * ** Relative 1.4 * * ** Entropy 1.1 ******** (13.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGGCC consensus CTA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17726836-17726956 2 6.54e-06 A GTGTGGCC ACACTCCGTT chr2R:10782828-10782948 70 6.54e-06 CGTCGGCGCA GTGTGGCC TTTGATCGGT chr2L:7984128-7984248 81 6.54e-06 CGGGGGTGTA GTGTGGCC AGTTCTTCTA chr2L:22536592-22536712 64 2.04e-05 AAGGAAAATA GTGCGGCC TTATTGGATC chr3L:21196729-21196849 22 2.04e-05 ATATGCTTCA GTGTTGCC AATCGTTGTT chr2R:11679319-11679439 41 2.04e-05 ACTATTTTCA GTGTTGCC ACAGCCATTT chr2R:16202914-16203034 9 2.04e-05 AGCGATCA GTGTTGCC AATTTAGCTT chrX:13128812-13128932 76 2.98e-05 TATTATTTCG GTGTGACC GTAGCTATAA chr3R:18242128-18242248 27 2.98e-05 ATTAAAGCTA GTGTGACC AAAGGACGCC chr2L:15751079-15751199 7 2.98e-05 CCGCCA GTGTGACC GCACTCTTAA chr3R:20593000-20593120 46 2.98e-05 CGCGTGTTTA GTGTGACC TCAGCTGCTT chr3R:8716185-8716305 2 2.98e-05 A GTGTGACC GGAACTCGCA chr3L:361367-361487 76 2.98e-05 TAACGCGACA GTGTGACC GAATATAGTT chr2R:15532248-15532368 15 2.98e-05 CTATCGATGA GTGTGACC GTGTGCAGGG chrX:6524384-6524504 59 3.64e-05 GCGGACCGGT GTGCTGCC GGCATGGTAT chrX:13755357-13755477 90 3.64e-05 CGGCGAGACC GTGCTGCC AGACTGTTCG chr3L:5813168-5813288 86 3.64e-05 ACTCCGACCA GTGCTGCC AAGCAATTCC chr2L:1614173-1614293 55 3.64e-05 TTAGTGTATA GTGCTGCC AGCTATTTGC chr3R:20830500-20830620 88 4.11e-05 AACAAACAGA GGGTGGCC CGGTGCGGGC chr2L:15060766-15060886 17 6.10e-05 GAAGTCAACA GTGTTACC GTATTTTAAT chr3R:30889034-30889154 76 6.10e-05 CGATATAATA GTGCGACC AGTCAGCGAT chr3L:16955332-16955452 73 6.10e-05 CTGTATGCTA GTGTTACC GCTCACCAAA chr2R:11970313-11970433 58 7.09e-05 AGTAAGTTTA GGGTTGCC AAGGCTTGCA chr2R:6749159-6749279 82 7.09e-05 GACCTGCGCT GGGCGGCC GATGCATCAG chr3R:29556265-29556385 80 8.98e-05 GTGAGTATCT GTGTGGCA GGCAGCGGTG chr2L:21156242-21156362 5 8.98e-05 CGCA GTGTGGCA AAGCGACGCT chr3L:11681897-11682017 1 8.98e-05 . GTGTGGCA ATGCCCTAAA chr2L:20734287-20734407 25 1.01e-04 ACAGCTGAGA GGGCTGCC AACTGGCTGA chrX:8900256-8900376 26 1.01e-04 GCTGTCCGCA GGGCTGCC AGATCGTCGA chr3L:199262-199382 66 1.21e-04 GGTGGCGTTC GTGTTGCA TCCGCCAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17726836-17726956 6.5e-06 1_[+3]_111 chr2R:10782828-10782948 6.5e-06 69_[+3]_43 chr2L:7984128-7984248 6.5e-06 80_[+3]_32 chr2L:22536592-22536712 2e-05 63_[+3]_49 chr3L:21196729-21196849 2e-05 21_[+3]_91 chr2R:11679319-11679439 2e-05 40_[+3]_72 chr2R:16202914-16203034 2e-05 8_[+3]_104 chrX:13128812-13128932 3e-05 75_[+3]_37 chr3R:18242128-18242248 3e-05 26_[+3]_86 chr2L:15751079-15751199 3e-05 6_[+3]_106 chr3R:20593000-20593120 3e-05 45_[+3]_67 chr3R:8716185-8716305 3e-05 1_[+3]_111 chr3L:361367-361487 3e-05 75_[+3]_37 chr2R:15532248-15532368 3e-05 14_[+3]_98 chrX:6524384-6524504 3.6e-05 58_[+3]_54 chrX:13755357-13755477 3.6e-05 89_[+3]_23 chr3L:5813168-5813288 3.6e-05 85_[+3]_27 chr2L:1614173-1614293 3.6e-05 54_[+3]_58 chr3R:20830500-20830620 4.1e-05 87_[+3]_25 chr2L:15060766-15060886 6.1e-05 16_[+3]_96 chr3R:30889034-30889154 6.1e-05 75_[+3]_37 chr3L:16955332-16955452 6.1e-05 72_[+3]_40 chr2R:11970313-11970433 7.1e-05 57_[+3]_55 chr2R:6749159-6749279 7.1e-05 81_[+3]_31 chr3R:29556265-29556385 9e-05 79_[+3]_33 chr2L:21156242-21156362 9e-05 4_[+3]_108 chr3L:11681897-11682017 9e-05 [+3]_112 chr2L:20734287-20734407 0.0001 24_[+3]_88 chrX:8900256-8900376 0.0001 25_[+3]_87 chr3L:199262-199382 0.00012 65_[+3]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTKRCC width=8 seqs=30 chr2R:17726836-17726956 ( 2) GTGTGGCC 1 chr2R:10782828-10782948 ( 70) GTGTGGCC 1 chr2L:7984128-7984248 ( 81) GTGTGGCC 1 chr2L:22536592-22536712 ( 64) GTGCGGCC 1 chr3L:21196729-21196849 ( 22) GTGTTGCC 1 chr2R:11679319-11679439 ( 41) GTGTTGCC 1 chr2R:16202914-16203034 ( 9) GTGTTGCC 1 chrX:13128812-13128932 ( 76) GTGTGACC 1 chr3R:18242128-18242248 ( 27) GTGTGACC 1 chr2L:15751079-15751199 ( 7) GTGTGACC 1 chr3R:20593000-20593120 ( 46) GTGTGACC 1 chr3R:8716185-8716305 ( 2) GTGTGACC 1 chr3L:361367-361487 ( 76) GTGTGACC 1 chr2R:15532248-15532368 ( 15) GTGTGACC 1 chrX:6524384-6524504 ( 59) GTGCTGCC 1 chrX:13755357-13755477 ( 90) GTGCTGCC 1 chr3L:5813168-5813288 ( 86) GTGCTGCC 1 chr2L:1614173-1614293 ( 55) GTGCTGCC 1 chr3R:20830500-20830620 ( 88) GGGTGGCC 1 chr2L:15060766-15060886 ( 17) GTGTTACC 1 chr3R:30889034-30889154 ( 76) GTGCGACC 1 chr3L:16955332-16955452 ( 73) GTGTTACC 1 chr2R:11970313-11970433 ( 58) GGGTTGCC 1 chr2R:6749159-6749279 ( 82) GGGCGGCC 1 chr3R:29556265-29556385 ( 80) GTGTGGCA 1 chr2L:21156242-21156362 ( 5) GTGTGGCA 1 chr3L:11681897-11682017 ( 1) GTGTGGCA 1 chr2L:20734287-20734407 ( 25) GGGCTGCC 1 chrX:8900256-8900376 ( 26) GGGCTGCC 1 chr3L:199262-199382 ( 66) GTGTTGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 3.2e-001 -1155 -1155 227 -1155 -1155 -1155 -32 154 -1155 -1155 227 -1155 -1155 53 -1155 129 -1155 -1155 145 60 16 -1155 168 -1155 -1155 226 -1155 -1155 -116 206 -1155 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 3.2e-001 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.300000 0.000000 0.700000 0.000000 0.000000 0.566667 0.433333 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.133333 0.866667 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-3 regular expression -------------------------------------------------------------------------------- GTG[TC][GT][GA]CC -------------------------------------------------------------------------------- Time 19.75 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGTCACA MEME-4 width = 8 sites = 7 llr = 81 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGTCACA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::a:a pos.-specific C a:::a:a: probability G :aa::::: matrix T :::a:::: bits 2.3 *** * * 2.0 *** * * 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (16.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGGTCACA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTCACA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2857085-2857205 91 9.83e-06 TCAGCAAACG CGGTCACA CTGCAAGTTC chr3L:13044399-13044519 50 9.83e-06 GCGAAAGCTC CGGTCACA CTGCTCAGTG chr2L:8511898-8512018 34 9.83e-06 GTCTCAGGCA CGGTCACA ACTTTAGCCA chr3L:19910225-19910345 49 9.83e-06 GAAAGCGAAA CGGTCACA CTGGCGACAT chr3R:24518184-24518304 17 9.83e-06 TTGCATATTC CGGTCACA CTACCTTTTA chr2L:12546586-12546706 87 9.83e-06 GCACATATAG CGGTCACA CTATACTGTT chrX:18515329-18515449 74 9.83e-06 ACGCGACGAA CGGTCACA TTGACCACCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTCACA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2857085-2857205 9.8e-06 90_[+4]_22 chr3L:13044399-13044519 9.8e-06 49_[+4]_63 chr2L:8511898-8512018 9.8e-06 33_[+4]_79 chr3L:19910225-19910345 9.8e-06 48_[+4]_64 chr3R:24518184-24518304 9.8e-06 16_[+4]_96 chr2L:12546586-12546706 9.8e-06 86_[+4]_26 chrX:18515329-18515449 9.8e-06 73_[+4]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTCACA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGTCACA width=8 seqs=7 chr2L:2857085-2857205 ( 91) CGGTCACA 1 chr3L:13044399-13044519 ( 50) CGGTCACA 1 chr2L:8511898-8512018 ( 34) CGGTCACA 1 chr3L:19910225-19910345 ( 49) CGGTCACA 1 chr3R:24518184-24518304 ( 17) CGGTCACA 1 chr2L:12546586-12546706 ( 87) CGGTCACA 1 chrX:18515329-18515449 ( 74) CGGTCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTCACA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 1.0e+004 -945 226 -945 -945 -945 -945 227 -945 -945 -945 227 -945 -945 -945 -945 180 -945 226 -945 -945 175 -945 -945 -945 -945 226 -945 -945 175 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTCACA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.0e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTCACA MEME-4 regular expression -------------------------------------------------------------------------------- CGGTCACA -------------------------------------------------------------------------------- Time 25.79 secs. ******************************************************************************** ******************************************************************************** MOTIF RCMGCAGC MEME-5 width = 8 sites = 24 llr = 219 E-value = 2.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCMGCAGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 3:4::6:: pos.-specific C 2a4:a1:a probability G 5:2a::a: matrix T :::::3:: bits 2.3 * ** ** 2.0 * ** ** 1.8 * ** ** 1.6 * ** ** Relative 1.4 * ** ** Entropy 1.1 * ** ** (13.2 bits) 0.9 * ** ** 0.7 ** ** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCAGC consensus A C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCMGCAGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17738324-17738444 34 4.95e-06 GAAAAGTATC GCCGCAGC CATAACATCG chr3L:8440932-8441052 113 4.95e-06 GAGTCCGAAC GCCGCAGC chrX:19153393-19153513 17 1.20e-05 TCGCGACGCA GCAGCAGC ACACACGTCT chr2L:4031446-4031566 47 1.20e-05 CAACAACTCA GCAGCAGC AACAACAACA chr2R:24132889-24133009 49 1.20e-05 TCACTAGCTC GCAGCAGC GCACGTGATA chr3L:13044399-13044519 34 1.68e-05 CGATAGAACG GCCGCTGC GAAAGCTCCG chr2L:3477297-3477417 11 1.68e-05 AACCGCTCGT GCCGCTGC TTGGATCCAC chr3R:15666098-15666218 26 1.68e-05 tcgtgttgtt gccgctgC ACATGTTGCA chrX:20257377-20257497 39 2.88e-05 AGCTAATTAA GCGGCAGC ACTGATTAGC chrX:6524384-6524504 18 2.88e-05 CAGCTAGCAT ACCGCAGC CTATCGGTGC chrX:15986799-15986919 94 2.88e-05 CACATCACTT GCGGCAGC ATGAACTTTA chr2L:2357563-2357683 14 2.88e-05 ATGCTGTTAA GCGGCAGC TAACAGACTG chr2L:10970274-10970394 13 4.06e-05 TGATTTTAAA GCAGCTGC CTGCTTTTTG chr3R:26566916-26567036 67 5.08e-05 ACAATCACCA ACAGCAGC CACACCCAGT chr2L:5771306-5771426 33 5.08e-05 ATGTAGTTCT ACAGCAGC GCCCTCTCAC chr2R:11279834-11279954 79 5.80e-05 ACCGCGACGG CCAGCAGC TGGTGGGCGC chr2R:17683509-17683629 54 5.80e-05 TTGAAGACTA CCAGCAGC TATGCAATAC chrX:18515329-18515449 112 5.80e-05 TTTTTTTTGG CCAGCAGC G chr3L:361367-361487 102 7.30e-05 TTGTGCAAAC ACCGCTGC CACACTGTGT chr2L:3158685-3158805 70 7.30e-05 AGATTCGAGC GCCGCCGC GCTGTTTATT chrX:12029007-12029127 31 8.49e-05 CGAAACGATA ACGGCAGC ATATGTTATC chr2R:17766958-17767078 101 8.49e-05 ACCATCGATG CCCGCTGC AAGAGTGACC chr3R:23733156-23733276 62 1.05e-04 TTCGATAACA ACAGCTGC GGGGCTTGGG chr2R:19446231-19446351 17 1.27e-04 acacccacac accgccgc acggtacgca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCMGCAGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17738324-17738444 4.9e-06 33_[+5]_79 chr3L:8440932-8441052 4.9e-06 112_[+5] chrX:19153393-19153513 1.2e-05 16_[+5]_96 chr2L:4031446-4031566 1.2e-05 46_[+5]_66 chr2R:24132889-24133009 1.2e-05 48_[+5]_64 chr3L:13044399-13044519 1.7e-05 33_[+5]_79 chr2L:3477297-3477417 1.7e-05 10_[+5]_102 chr3R:15666098-15666218 1.7e-05 25_[+5]_87 chrX:20257377-20257497 2.9e-05 38_[+5]_74 chrX:6524384-6524504 2.9e-05 17_[+5]_95 chrX:15986799-15986919 2.9e-05 93_[+5]_19 chr2L:2357563-2357683 2.9e-05 13_[+5]_99 chr2L:10970274-10970394 4.1e-05 12_[+5]_100 chr3R:26566916-26567036 5.1e-05 66_[+5]_46 chr2L:5771306-5771426 5.1e-05 32_[+5]_80 chr2R:11279834-11279954 5.8e-05 78_[+5]_34 chr2R:17683509-17683629 5.8e-05 53_[+5]_59 chrX:18515329-18515449 5.8e-05 111_[+5]_1 chr3L:361367-361487 7.3e-05 101_[+5]_11 chr2L:3158685-3158805 7.3e-05 69_[+5]_43 chrX:12029007-12029127 8.5e-05 30_[+5]_82 chr2R:17766958-17767078 8.5e-05 100_[+5]_12 chr3R:23733156-23733276 0.0001 61_[+5]_51 chr2R:19446231-19446351 0.00013 16_[+5]_96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCMGCAGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCMGCAGC width=8 seqs=24 chrX:17738324-17738444 ( 34) GCCGCAGC 1 chr3L:8440932-8441052 ( 113) GCCGCAGC 1 chrX:19153393-19153513 ( 17) GCAGCAGC 1 chr2L:4031446-4031566 ( 47) GCAGCAGC 1 chr2R:24132889-24133009 ( 49) GCAGCAGC 1 chr3L:13044399-13044519 ( 34) GCCGCTGC 1 chr2L:3477297-3477417 ( 11) GCCGCTGC 1 chr3R:15666098-15666218 ( 26) GCCGCTGC 1 chrX:20257377-20257497 ( 39) GCGGCAGC 1 chrX:6524384-6524504 ( 18) ACCGCAGC 1 chrX:15986799-15986919 ( 94) GCGGCAGC 1 chr2L:2357563-2357683 ( 14) GCGGCAGC 1 chr2L:10970274-10970394 ( 13) GCAGCTGC 1 chr3R:26566916-26567036 ( 67) ACAGCAGC 1 chr2L:5771306-5771426 ( 33) ACAGCAGC 1 chr2R:11279834-11279954 ( 79) CCAGCAGC 1 chr2R:17683509-17683629 ( 54) CCAGCAGC 1 chrX:18515329-18515449 ( 112) CCAGCAGC 1 chr3L:361367-361487 ( 102) ACCGCTGC 1 chr2L:3158685-3158805 ( 70) GCCGCCGC 1 chrX:12029007-12029127 ( 31) ACGGCAGC 1 chr2R:17766958-17767078 ( 101) CCCGCTGC 1 chr3R:23733156-23733276 ( 62) ACAGCTGC 1 chr2R:19446231-19446351 ( 17) ACCGCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCMGCAGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3 E= 2.1e+003 -3 -32 138 -1123 -1123 226 -1123 -1123 48 100 -32 -1123 -1123 -1123 227 -1123 -1123 226 -1123 -1123 107 -132 -1123 2 -1123 -1123 227 -1123 -1123 226 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCMGCAGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.1e+003 0.291667 0.166667 0.541667 0.000000 0.000000 1.000000 0.000000 0.000000 0.416667 0.416667 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.625000 0.083333 0.000000 0.291667 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCMGCAGC MEME-5 regular expression -------------------------------------------------------------------------------- [GA]C[AC]GC[AT]GC -------------------------------------------------------------------------------- Time 31.80 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:20634678-20634798 1.25e-02 86_[+1(1.94e-05)]_26 chr2L:1362382-1362502 4.95e-02 22_[+2(5.71e-05)]_90 chrX:15910093-15910213 1.07e-01 120 chrX:4649849-4649969 1.53e-03 11_[+1(1.94e-05)]_89_[+2(5.71e-05)]_\ 4 chr2L:3029196-3029316 3.20e-02 120 chr2R:23942410-23942530 2.85e-01 120 chr2R:16202914-16203034 1.69e-03 8_[+3(2.04e-05)]_77_[+2(1.66e-05)]_\ 19 chr2L:2357563-2357683 1.58e-01 13_[+5(2.88e-05)]_99 chrX:20423932-20424052 5.44e-02 103_[+1(1.94e-05)]_9 chr2R:24337655-24337775 7.13e-02 31_[+2(5.71e-05)]_61_[+2(5.71e-05)]_\ 12 chr2R:15532248-15532368 7.00e-02 14_[+3(2.98e-05)]_98 chr3L:4185441-4185561 2.89e-02 120 chr3L:2377565-2377685 6.34e-02 34_[+2(5.71e-05)]_78 chr2R:11679319-11679439 6.75e-07 4_[+3(6.54e-06)]_28_[+3(2.04e-05)]_\ 35_[+4(8.05e-05)]_29 chr3R:10049090-10049210 6.98e-02 120 chr3R:10614155-10614275 2.11e-01 120 chr3R:23820402-23820522 5.55e-01 120 chr3R:15347951-15348071 2.44e-01 120 chr2R:14860738-14860858 1.44e-01 120 chr3R:23763089-23763209 6.32e-01 120 chrX:15986799-15986919 1.85e-02 93_[+5(2.88e-05)]_19 chrX:18405153-18405273 4.03e-01 120 chr2L:3158685-3158805 3.59e-03 39_[+2(1.66e-05)]_22_[+5(7.30e-05)]_\ 43 chrX:17229985-17230105 7.25e-01 120 chr2L:5542375-5542495 1.00e+00 120 chr2L:13367396-13367516 5.61e-01 120 chr3L:15794424-15794544 9.99e-01 120 chr2L:5771306-5771426 9.13e-02 32_[+5(5.08e-05)]_80 chr3R:9335322-9335442 9.85e-01 120 chr3R:19164972-19165092 5.96e-01 120 chr2L:20675976-20676096 5.65e-02 120 chr2L:7566732-7566852 9.71e-01 120 chr2R:9251976-9252096 3.39e-02 120 chrX:17175901-17176021 5.69e-01 120 chr3R:23679956-23680076 1.80e-03 11_[+2(5.71e-05)]_85_[+4(8.05e-05)]_\ 8 chr2R:11712225-11712345 7.12e-02 120 chr3R:18301707-18301827 1.35e-01 85_[+1(1.94e-05)]_27 chrX:6663289-6663409 9.67e-01 120 chr3L:9505233-9505353 6.42e-02 120 chr3R:24318421-24318541 6.67e-01 120 chr2R:16505485-16505605 9.57e-01 120 chr3R:29076173-29076293 7.09e-01 120 chrX:8196314-8196434 5.19e-01 120 chr2R:11178538-11178658 8.73e-01 120 chr3L:5749861-5749981 3.98e-01 120 chr2R:25183126-25183246 7.85e-01 120 chrX:8900256-8900376 1.26e-01 120 chr3L:5899386-5899506 1.80e-01 120 chr2L:22130041-22130161 7.49e-01 120 chr2L:6971765-6971885 9.29e-01 120 chr2R:23668798-23668918 3.28e-01 120 chr2R:17412624-17412744 6.81e-03 109_[+2(1.66e-05)]_3 chr3R:31805371-31805491 3.60e-02 120 chr3L:16768472-16768592 9.91e-01 120 chr2R:24132889-24133009 1.27e-02 48_[+5(1.20e-05)]_64 chr3R:21703470-21703590 9.89e-01 120 chrX:10325999-10326119 8.70e-01 120 chr2L:4973760-4973880 2.61e-01 120 chr3R:30039631-30039751 4.17e-02 120 chr2L:3144812-3144932 2.00e-01 59_[+1(8.84e-05)]_53 chr2R:21662363-21662483 5.52e-01 120 chr3R:27677206-27677326 6.71e-01 120 chr2L:7984128-7984248 1.18e-02 80_[+3(6.54e-06)]_32 chr3L:5152515-5152635 4.21e-02 112_[+1(8.84e-05)] chrX:5329413-5329533 4.71e-01 120 chrX:20511572-20511692 8.38e-01 120 chr3R:23157857-23157977 5.61e-02 49_[+1(8.84e-05)]_63 chr2L:4031446-4031566 1.02e-02 46_[+5(1.20e-05)]_66 chr2L:10221029-10221149 9.64e-01 120 chrX:18515329-18515449 2.67e-03 73_[+4(9.83e-06)]_30_[+5(5.80e-05)]_\ 1 chr3L:8176011-8176131 6.61e-01 120 chr2R:22508008-22508128 8.60e-01 120 chrX:17125026-17125146 4.73e-01 120 chr4:1230707-1230827 6.22e-01 120 chr2L:1614173-1614293 3.92e-02 54_[+3(3.64e-05)]_58 chr2L:10970274-10970394 5.47e-02 12_[+5(4.06e-05)]_100 chrX:19601797-19601917 2.06e-04 36_[+1(4.64e-05)]_45_[+2(1.66e-05)]_\ 23 chr3R:15792556-15792676 8.39e-01 120 chr2L:11829380-11829500 2.32e-02 120 chr2R:12140535-12140655 4.98e-01 120 chr3R:16655772-16655892 2.24e-01 40_[+1(4.64e-05)]_72 chr3R:7082047-7082167 4.51e-01 120 chr3R:11628534-11628654 2.90e-01 120 chr3R:10626220-10626340 7.32e-01 120 chr3L:1947646-1947766 2.83e-02 60_[+1(8.84e-05)]_52 chrX:18774906-18775026 1.79e-01 120 chr3R:30004827-30004947 1.13e-02 120 chr2R:6749159-6749279 7.71e-04 52_[+1(1.94e-05)]_21_[+3(7.09e-05)]_\ 31 chrX:15653641-15653761 2.64e-01 120 chr2L:20734287-20734407 1.21e-01 120 chr3R:15330639-15330759 1.40e-01 57_[+2(5.71e-05)]_55 chr2R:19446231-19446351 8.88e-05 82_[+2(6.86e-05)]_11_[+1(8.84e-05)]_\ 11 chr2L:3106117-3106237 7.17e-01 120 chr3R:10350087-10350207 1.18e-01 70_[+4(8.05e-05)]_42 chr3L:361367-361487 3.22e-03 75_[+3(2.98e-05)]_18_[+5(7.30e-05)]_\ 11 chr3L:20731120-20731240 9.34e-01 120 chr2R:17766958-17767078 1.51e-03 45_[+1(4.64e-05)]_47_[+5(8.49e-05)]_\ 12 chr3R:5282830-5282950 2.88e-01 120 chr2R:11397360-11397480 5.53e-02 120 chrX:6110020-6110140 7.61e-02 83_[+2(5.71e-05)]_29 chr2R:17062632-17062752 1.36e-01 120 chr4:210108-210228 3.16e-01 120 chrX:796347-796467 8.23e-01 120 chr2R:11970313-11970433 3.22e-01 57_[+3(7.09e-05)]_55 chrX:23013424-23013544 1.31e-01 12_[+1(4.64e-05)]_39_[+1(4.64e-05)]_\ 53 chr3L:22872184-22872304 1.46e-01 120 chr3L:5813168-5813288 5.51e-02 85_[+3(3.64e-05)]_27 chr3R:8349570-8349690 9.69e-01 120 chr2L:2999216-2999336 1.63e-02 11_[+1(1.94e-05)]_101 chr2R:17590845-17590965 9.41e-02 120 chrX:15462561-15462681 5.24e-01 120 chrX:12029007-12029127 4.69e-05 30_[+5(8.49e-05)]_44_[+1(1.94e-05)]_\ 30 chr3R:10893546-10893666 3.32e-02 120 chr2R:14411710-14411830 3.36e-01 120 chr3R:31221168-31221288 1.82e-02 120 chr3L:8440932-8441052 4.70e-02 112_[+5(4.95e-06)] chr3R:15666098-15666218 1.14e-02 25_[+5(1.68e-05)]_87 chr2L:18859255-18859375 2.58e-01 120 chr3L:199262-199382 1.12e-01 120 chr2L:12546586-12546706 4.53e-02 86_[+4(9.83e-06)]_26 chr2L:11338325-11338445 4.31e-01 120 chr2R:7955865-7955985 7.80e-02 120 chr2L:4403140-4403260 4.61e-02 83_[+1(4.64e-05)]_3_[+1(8.84e-05)]_\ 18 chr2L:14234000-14234120 8.28e-01 120 chrX:947665-947785 9.97e-01 120 chr2L:20821891-20822011 1.14e-01 120 chr3L:745621-745741 2.56e-01 120 chr3L:4553516-4553636 6.74e-01 120 chr2R:16731270-16731390 1.37e-01 120 chr3R:13052041-13052161 3.43e-01 6_[+1(4.64e-05)]_106 chr2L:3173035-3173155 1.04e-01 120 chr2R:6157408-6157528 9.96e-01 120 chr2R:6015744-6015864 6.28e-01 120 chr3R:11581510-11581630 1.01e-01 46_[+1(8.84e-05)]_66 chr3R:23293533-23293653 9.98e-01 120 chr2R:13968173-13968293 4.04e-02 45_[+2(5.71e-05)]_67 chr2L:3444948-3445068 5.35e-01 120 chrX:8606285-8606405 1.61e-03 69_[+1(4.64e-05)]_43 chr3R:8716185-8716305 5.75e-03 1_[+3(2.98e-05)]_111 chr3L:8720151-8720271 9.01e-01 120 chr3R:14659607-14659727 1.37e-01 120 chrX:19153393-19153513 6.06e-03 13_[+5(1.20e-05)]_99 chr2R:23697864-23697984 4.39e-01 120 chr2L:13878976-13879096 9.63e-01 120 chr2R:14913334-14913454 5.82e-01 120 chr3R:20593000-20593120 2.05e-03 45_[+3(2.98e-05)]_67 chrX:11108272-11108392 9.48e-01 120 chr3R:8744329-8744449 9.18e-01 120 chr3R:21187091-21187211 9.95e-01 120 chr3L:3197615-3197735 9.88e-01 120 chrX:15063812-15063932 1.09e-02 120 chr3R:17540250-17540370 8.59e-01 120 chr2L:9494846-9494966 5.79e-01 120 chr3L:21196729-21196849 2.66e-03 21_[+3(2.04e-05)]_91 chr3R:12350604-12350724 2.94e-03 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chr2L:15751079-15751199 1.06e-01 6_[+3(2.98e-05)]_106 chr3L:19910225-19910345 1.69e-04 48_[+4(9.83e-06)]_1_[+2(5.71e-05)]_\ 55 chrX:8141512-8141632 2.50e-01 120 chr3L:15968015-15968135 9.62e-01 120 chr2L:21237113-21237233 7.36e-03 120 chr2R:13008296-13008416 8.82e-01 120 chr2L:203644-203764 9.59e-02 120 chr2R:12173490-12173610 3.30e-02 120 chr3R:22041880-22042000 6.93e-01 120 chr2L:901634-901754 3.36e-01 120 chr2R:10782828-10782948 1.06e-02 69_[+3(6.54e-06)]_43 chr3L:6059211-6059331 1.38e-01 120 chr2L:2729998-2730118 1.65e-01 120 chr2L:7339761-7339881 2.31e-01 120 chr2L:21156242-21156362 1.25e-02 4_[+3(8.98e-05)]_108 chr2R:20832550-20832670 6.73e-01 120 chr3R:25004881-25005001 9.37e-01 120 chr3L:8399223-8399343 8.63e-02 120 chr3R:22039601-22039721 7.74e-01 120 chr3R:18274437-18274557 1.94e-01 26_[+1(1.94e-05)]_86 chrX:13755357-13755477 1.39e-01 89_[+3(3.64e-05)]_23 chr3L:5926134-5926254 8.14e-01 120 chr3R:5588250-5588370 8.49e-02 120 chrX:4322698-4322818 3.27e-01 120 chr2R:23940178-23940298 1.00e+00 120 chr2L:10767896-10768016 5.04e-01 120 chr2R:24086558-24086678 2.21e-02 1_[+1(4.64e-05)]_111 chrX:9319245-9319365 8.61e-03 [+1(8.84e-05)]_112 chr3R:18242128-18242248 8.99e-02 26_[+3(2.98e-05)]_86 chr3R:22421091-22421211 2.84e-02 120 chr3R:30889034-30889154 3.69e-04 27_[+3(6.54e-06)]_40_[+3(6.10e-05)]_\ 37 chr2L:8511898-8512018 9.14e-03 33_[+4(9.83e-06)]_79 chr2L:19377426-19377546 1.38e-02 120 chr2R:18802260-18802380 9.66e-01 120 chr3R:29556265-29556385 2.88e-02 79_[+3(8.98e-05)]_33 chr2L:8602764-8602884 9.41e-01 120 chr3R:26566916-26567036 1.12e-03 9_[+2(5.71e-05)]_49_[+5(5.08e-05)]_\ 46 chr2R:17683509-17683629 8.03e-03 53_[+5(5.80e-05)]_35_[+2(6.86e-05)]_\ 16 chr3R:29591692-29591812 2.98e-02 96_[+1(1.94e-05)]_16 chrX:6524384-6524504 4.19e-05 17_[+5(2.88e-05)]_33_[+3(3.64e-05)]_\ 54 chr3R:15147444-15147564 1.81e-02 120 chr2R:14906645-14906765 9.92e-01 120 chr3R:20948122-20948242 9.47e-01 120 chr3L:13044399-13044519 4.89e-06 1_[+1(8.84e-05)]_12_[+1(1.94e-05)]_\ 4_[+5(1.68e-05)]_8_[+4(9.83e-06)]_63 chr3L:19000631-19000751 9.59e-02 102_[+2(5.71e-05)]_10 chr2L:7632923-7633043 4.08e-01 120 chrX:1944340-1944460 9.43e-01 120 chr3L:15999703-15999823 9.94e-02 120 chr2L:6797564-6797684 3.56e-01 120 chr3R:4387603-4387723 4.68e-01 120 chr2R:17726836-17726956 4.23e-05 1_[+3(6.54e-06)]_62_[+2(1.66e-05)]_\ 41 chr2R:23176723-23176843 1.84e-01 120 chr3R:23733156-23733276 9.02e-03 120 chr3R:26937644-26937764 7.71e-01 120 chrX:20257377-20257497 3.80e-03 38_[+5(2.88e-05)]_74 chr3L:15142475-15142595 2.67e-01 120 chr2R:11279834-11279954 2.84e-02 78_[+5(5.80e-05)]_34 chr2L:5044011-5044131 9.93e-01 120 chrX:2149678-2149798 6.34e-01 120 chr3R:23922964-23923084 4.38e-01 120 chrX:13128812-13128932 9.41e-03 75_[+3(2.98e-05)]_37 chr2L:2037609-2037729 7.13e-03 120 chr2R:24024126-24024246 9.21e-02 32_[+1(1.94e-05)]_80 chr2L:2857085-2857205 1.12e-03 45_[+1(1.94e-05)]_37_[+4(9.83e-06)]_\ 22 chr4:867087-867207 8.46e-01 120 chr3R:10696568-10696688 4.80e-01 120 chr3L:642902-643022 2.63e-01 120 chr2L:10989319-10989439 2.27e-01 120 chr2R:10142321-10142441 1.45e-01 120 chr3R:20830500-20830620 1.30e-03 87_[+3(4.11e-05)]_25 chr2R:11359208-11359328 1.14e-01 120 chr2L:15060766-15060886 2.30e-01 16_[+3(6.10e-05)]_96 chr2L:22536592-22536712 7.38e-02 63_[+3(2.04e-05)]_49 chrX:17738324-17738444 3.37e-04 2_[+1(1.94e-05)]_23_[+5(4.95e-06)]_\ 79 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************