******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/MTF-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:16910605-16910725 1.0000 120 chr3R:7116668-7116788 1.0000 120 chr3R:7117729-7117849 1.0000 120 chr4:725224-725344 1.0000 120 chr2L:19406565-19406685 1.0000 120 chr2R:24074906-24075026 1.0000 120 chr3L:2090059-2090179 1.0000 120 chr2L:19404896-19405016 1.0000 120 chr3R:8316867-8316987 1.0000 120 chr3R:20534735-20534855 1.0000 120 chr2L:15248272-15248392 1.0000 120 chr2R:20672632-20672752 1.0000 120 chr2R:15802954-15803074 1.0000 120 chr2R:6654654-6654774 1.0000 120 chr2R:12302056-12302176 1.0000 120 chr3R:30389272-30389392 1.0000 120 chr3L:3309003-3309123 1.0000 120 chr3R:30387792-30387912 1.0000 120 chr2L:7407429-7407549 1.0000 120 chr3L:23250407-23250527 1.0000 120 chr2R:23611942-23612062 1.0000 120 chr3R:30391153-30391273 1.0000 120 chr3R:20360162-20360282 1.0000 120 chr3L:9423289-9423409 1.0000 120 chr3L:15823955-15824075 1.0000 120 chr2R:6574691-6574811 1.0000 120 chr2R:21640421-21640541 1.0000 120 chr2L:15247751-15247871 1.0000 120 chrX:19631678-19631798 1.0000 120 chr2L:20478699-20478819 1.0000 120 chrX:7930541-7930661 1.0000 120 chr3R:9784452-9784572 1.0000 120 chr2L:19407869-19407989 1.0000 120 chr3R:22042147-22042267 1.0000 120 chr2L:19918065-19918185 1.0000 120 chr2R:24603575-24603695 1.0000 120 chr3L:3810081-3810201 1.0000 120 chr3R:22755403-22755523 1.0000 120 chr3R:21199647-21199767 1.0000 120 chr3L:5096761-5096881 1.0000 120 chr3R:21825282-21825402 1.0000 120 chr3R:25280115-25280235 1.0000 120 chrX:18363542-18363662 1.0000 120 chr2L:5101474-5101594 1.0000 120 chrX:3832380-3832500 1.0000 120 chr3R:30386953-30387073 1.0000 120 chr2R:7779478-7779598 1.0000 120 chr3R:30102795-30102915 1.0000 120 chrX:2024984-2025104 1.0000 120 chr3R:9783648-9783768 1.0000 120 chr3L:2762500-2762620 1.0000 120 chr3L:15824728-15824848 1.0000 120 chr2L:16530925-16531045 1.0000 120 chrX:13332764-13332884 1.0000 120 chr3R:29868824-29868944 1.0000 120 chrX:11858997-11859117 1.0000 120 chr2R:24243212-24243332 1.0000 120 chr2L:19402064-19402184 1.0000 120 chr2L:8697904-8698024 1.0000 120 chr3R:16558859-16558979 1.0000 120 chrX:362239-362359 1.0000 120 chr3L:16957423-16957543 1.0000 120 chr3R:25027270-25027390 1.0000 120 chr3L:3417847-3417967 1.0000 120 chr3L:14274822-14274942 1.0000 120 chr3L:13403597-13403717 1.0000 120 chr2L:14395184-14395304 1.0000 120 chr3R:30352812-30352932 1.0000 120 chr2L:9888010-9888130 1.0000 120 chr3R:21158834-21158954 1.0000 120 chr2L:18934738-18934858 1.0000 120 chr2R:11039048-11039168 1.0000 120 chr3L:16911263-16911383 1.0000 120 chrX:10462077-10462197 1.0000 120 chr2L:6084962-6085082 1.0000 120 chr3R:28552358-28552478 1.0000 120 chr2R:14486467-14486587 1.0000 120 chr2L:18981601-18981721 1.0000 120 chrX:3358985-3359105 1.0000 120 chr3R:12701333-12701453 1.0000 120 chr3R:17719374-17719494 1.0000 120 chr3R:9390274-9390394 1.0000 120 chr2L:12498705-12498825 1.0000 120 chr3L:8765576-8765696 1.0000 120 chrX:7579944-7580064 1.0000 120 chr2R:9407621-9407741 1.0000 120 chr3L:14205410-14205530 1.0000 120 chrX:16890723-16890843 1.0000 120 chr3R:30387994-30388114 1.0000 120 chr3L:14988380-14988500 1.0000 120 chr3L:1516601-1516721 1.0000 120 chrX:12947794-12947914 1.0000 120 chr3L:19263675-19263795 1.0000 120 chr2R:11646060-11646180 1.0000 120 chr2L:19079876-19079996 1.0000 120 chr2L:15249128-15249248 1.0000 120 chr2R:20999419-20999539 1.0000 120 chr2R:15249569-15249689 1.0000 120 chr3L:20494021-20494141 1.0000 120 chr2L:7166005-7166125 1.0000 120 chr3R:12369895-12370015 1.0000 120 chrX:18930304-18930424 1.0000 120 chr2L:1970619-1970739 1.0000 120 chrX:15498019-15498139 1.0000 120 chr3R:9388114-9388234 1.0000 120 chr3L:8834614-8834734 1.0000 120 chrX:18512356-18512476 1.0000 120 chrX:3354506-3354626 1.0000 120 chr2R:18807383-18807503 1.0000 120 chr2R:24334237-24334357 1.0000 120 chr3L:8379317-8379437 1.0000 120 chr3R:21015772-21015892 1.0000 120 chr3L:15336644-15336764 1.0000 120 chr3R:10098646-10098766 1.0000 120 chr3R:31608189-31608309 1.0000 120 chr3L:6612786-6612906 1.0000 120 chr2R:7755051-7755171 1.0000 120 chr2L:2749204-2749324 1.0000 120 chr3L:10341674-10341794 1.0000 120 chr3L:6140281-6140401 1.0000 120 chrX:12276701-12276821 1.0000 120 chr2R:20888865-20888985 1.0000 120 chr3L:3288559-3288679 1.0000 120 chr3R:9219501-9219621 1.0000 120 chr3R:11338429-11338549 1.0000 120 chr2R:12592164-12592284 1.0000 120 chr3R:6765012-6765132 1.0000 120 chr2R:23415320-23415440 1.0000 120 chr3L:20507719-20507839 1.0000 120 chr3R:5107108-5107228 1.0000 120 chr3R:7779741-7779861 1.0000 120 chr3R:13441836-13441956 1.0000 120 chr2R:19269754-19269874 1.0000 120 chr3L:6352335-6352455 1.0000 120 chr3L:7641664-7641784 1.0000 120 chrX:12889287-12889407 1.0000 120 chr2L:20327515-20327635 1.0000 120 chr3R:14284454-14284574 1.0000 120 chr3L:4384435-4384555 1.0000 120 chr3L:14545832-14545952 1.0000 120 chr2L:3862741-3862861 1.0000 120 chr3L:5845385-5845505 1.0000 120 chr3L:3903431-3903551 1.0000 120 chr3R:9891694-9891814 1.0000 120 chr2R:6811784-6811904 1.0000 120 chr2R:19725888-19726008 1.0000 120 chr3L:11512559-11512679 1.0000 120 chrX:15568531-15568651 1.0000 120 chr2R:8272876-8272996 1.0000 120 chr3L:18020965-18021085 1.0000 120 chr3L:11534494-11534614 1.0000 120 chr2R:23979520-23979640 1.0000 120 chrX:18238013-18238133 1.0000 120 chr3L:12835657-12835777 1.0000 120 chr2L:2909642-2909762 1.0000 120 chrX:19261871-19261991 1.0000 120 chr2L:2861558-2861678 1.0000 120 chr2R:14488420-14488540 1.0000 120 chr2R:9266577-9266697 1.0000 120 chrX:3024669-3024789 1.0000 120 chr2L:2967031-2967151 1.0000 120 chr2L:3323308-3323428 1.0000 120 chr3L:21240318-21240438 1.0000 120 chr3R:26908905-26909025 1.0000 120 chr3R:12398854-12398974 1.0000 120 chr2L:1118919-1119039 1.0000 120 chr2R:7885964-7886084 1.0000 120 chr3R:20273686-20273806 1.0000 120 chr2R:6464945-6465065 1.0000 120 chr3R:19641210-19641330 1.0000 120 chr3R:17759956-17760076 1.0000 120 chr2R:11403185-11403305 1.0000 120 chr2L:5338030-5338150 1.0000 120 chr2R:11426881-11427001 1.0000 120 chr3L:20954270-20954390 1.0000 120 chr3R:22684165-22684285 1.0000 120 chr3L:8077348-8077468 1.0000 120 chr2L:20016569-20016689 1.0000 120 chrX:16836371-16836491 1.0000 120 chr2L:3121883-3122003 1.0000 120 chr3L:11003045-11003165 1.0000 120 chr3L:12223157-12223277 1.0000 120 chr2R:21082664-21082784 1.0000 120 chr2R:6603133-6603253 1.0000 120 chr3L:6217939-6218059 1.0000 120 chr3R:10093701-10093821 1.0000 120 chr2R:16159117-16159237 1.0000 120 chr3L:19907433-19907553 1.0000 120 chr2L:7133940-7134060 1.0000 120 chr3L:3134193-3134313 1.0000 120 chr2R:6023217-6023337 1.0000 120 chr2L:1654430-1654550 1.0000 120 chr3R:31945772-31945892 1.0000 120 chr2L:19998312-19998432 1.0000 120 chr2R:14487733-14487853 1.0000 120 chr3L:960737-960857 1.0000 120 chrX:11817860-11817980 1.0000 120 chr3R:17078174-17078294 1.0000 120 chr3R:19326140-19326260 1.0000 120 chr2L:5303764-5303884 1.0000 120 chr3R:23284419-23284539 1.0000 120 chr2L:6818445-6818565 1.0000 120 chr3L:21055947-21056067 1.0000 120 chr3R:6182674-6182794 1.0000 120 chr3R:29066414-29066534 1.0000 120 chr3L:9333848-9333968 1.0000 120 chr2L:8289927-8290047 1.0000 120 chr2L:19054335-19054455 1.0000 120 chr2L:20935498-20935618 1.0000 120 chr2R:13336756-13336876 1.0000 120 chr2L:13190723-13190843 1.0000 120 chr3L:11295117-11295237 1.0000 120 chr3R:14098652-14098772 1.0000 120 chr3R:5086595-5086715 1.0000 120 chr2L:12348009-12348129 1.0000 120 chr3L:18996638-18996758 1.0000 120 chr2L:3228857-3228977 1.0000 120 chrX:2462097-2462217 1.0000 120 chr3L:15597172-15597292 1.0000 120 chr2R:16160323-16160443 1.0000 120 chr3L:1885549-1885669 1.0000 120 chr2R:10227881-10228001 1.0000 120 chr2L:425624-425744 1.0000 120 chr2R:9861916-9862036 1.0000 120 chrX:8409245-8409365 1.0000 120 chr3L:15530855-15530975 1.0000 120 chr2L:18572223-18572343 1.0000 120 chr2R:22200013-22200133 1.0000 120 chr3L:11355798-11355918 1.0000 120 chr2L:12076099-12076219 1.0000 120 chr3R:23181118-23181238 1.0000 120 chr3R:7107868-7107988 1.0000 120 chr3R:19096946-19097066 1.0000 120 chr2L:22036956-22037076 1.0000 120 chr2R:11582059-11582179 1.0000 120 chr3L:14354790-14354910 1.0000 120 chr3L:8347521-8347641 1.0000 120 chr3R:30198962-30199082 1.0000 120 chr3R:23297231-23297351 1.0000 120 chr2L:19363756-19363876 1.0000 120 chr2L:2906253-2906373 1.0000 120 chr2L:16680464-16680584 1.0000 120 chrX:1026606-1026726 1.0000 120 chr3R:6665452-6665572 1.0000 120 chr3L:8525895-8526015 1.0000 120 chr3L:17937447-17937567 1.0000 120 chr2R:15675851-15675971 1.0000 120 chr3R:21263294-21263414 1.0000 120 chr3R:4975296-4975416 1.0000 120 chr2L:6252360-6252480 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_MTF-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/MTF-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.275 C 0.227 G 0.226 T 0.272 Background letter frequencies (from file dataset with add-one prior applied): A 0.274 C 0.227 G 0.226 T 0.272 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGCRCACG MEME-1 width = 8 sites = 48 llr = 434 E-value = 1.6e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCRCACG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 11:71a:1 pos.-specific C ::a:9:a: probability G :9:3:::9 matrix T 8::::::: bits 2.1 * * 1.9 * * 1.7 ** *** 1.5 ** **** Relative 1.3 ** **** Entropy 1.1 ******** (13.0 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCACACG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCRCACG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:8525895-8526015 41 1.22e-05 CATACGCAGA TGCACACG TAACTACACT chrX:16836371-16836491 58 1.22e-05 CTTTACGATC TGCACACG CACACACAAA chr2R:23979520-23979640 91 1.22e-05 GATACACACA TGCACACG ACCATATCGT chr2L:3862741-3862861 92 1.22e-05 ACGGTAAGTC TGCACACG CACCCACCCT chrX:18512356-18512476 25 1.22e-05 TTGTATTCCC TGCACACG ACCCACTAcc chr2L:8697904-8698024 106 1.22e-05 ATGAATGGCT TGCACACG ACGGTAT chrX:11858997-11859117 58 1.22e-05 TCCTCAATTT TGCACACG ACCCATCGTC chr3L:15824728-15824848 57 1.22e-05 TGTTGCACCA TGCACACG CACACTAGAG chrX:3832380-3832500 29 1.22e-05 TTGGCCGTGT TGCACACG CGCCAAACGC chrX:7930541-7930661 59 1.22e-05 CATCGCCAAA TGCACACG AGACGCAAAG chr3R:30391153-30391273 73 1.22e-05 CACTGCCTGG TGCACACG GCTTTGCCGC chr3R:8316867-8316987 70 1.22e-05 GTAGAATTTA TGCACACG GCCGCAGAAG chr3L:2090059-2090179 69 1.22e-05 ATGTGCGTTT TGCACACG GACCCAAAAC chr3R:7117729-7117849 42 1.22e-05 AGTCTTTGTC TGCACACG GCACGAAGGC chr3R:7116668-7116788 65 1.22e-05 TAATTGTGAG TGCACACG GCACGGCAAC chr3L:15336644-15336764 37 2.23e-05 AAAGAGAAGT TGCGCACG TTGCGGCAGT chr2R:9407621-9407741 57 2.23e-05 ACTGGCAATG TGCGCACG GCACGAGTTT chr2R:14486467-14486587 14 2.23e-05 ATTGTGATTG TGCGCACG CCCCTTATCA chr2L:19402064-19402184 21 2.23e-05 AATAACATTT TGCGCACG CTTTTGGCCA chr2R:24243212-24243332 33 2.23e-05 TGGCTTTCTT TGCGCACG ACTCTCGGGC chrX:13332764-13332884 47 2.23e-05 TGATCGCTGC TGCGCACG TTACGTCGTT chr3R:22042147-22042267 69 2.23e-05 TCTCTTTCTT TGCGCACG GTTCAGTGGT chr3R:20360162-20360282 47 2.23e-05 TTGTTTGTTT TGCGCACG TTTTAACTTA chr3L:3309003-3309123 35 2.23e-05 TTGGCATTAC TGCGCACG GTACCATGCG chr2L:19404896-19405016 61 2.23e-05 tgGACCTCGT TGCGCACG ACGCTCTCCT chr3L:14545832-14545952 17 3.46e-05 AACAGCAACA AGCACACG TCTGGTTTAC chr3R:17719374-17719494 29 3.46e-05 TGACATTAAC AGCACACG TACGAGAATT chr3L:15823955-15824075 67 3.46e-05 TTGATAGATA AGCACACG GCCCCAAGAA chr2L:15248272-15248392 32 3.46e-05 GTGTGAATAT AGCACACG GACCGTTCAA chr3R:21263294-21263414 98 4.93e-05 TAGCTCAATA TGCACACA ATGTCCACAT chr3L:8347521-8347641 41 4.93e-05 ACGCCAGCTG TGCACACA ACGTCGCGGT chr3R:17078174-17078294 42 4.93e-05 TGTGTGTGTG TGCACACA TGTGCCTGAG chr2R:16159117-16159237 101 4.93e-05 TAATTTATTA TGCACACA CACCACGGAA chr2R:15675851-15675971 10 7.42e-05 GAGTGTGCG TGCAAACG TTTCGGTGTG chr3R:19096946-19097066 10 7.42e-05 GAGTTGGAG TGCAAACG TCTCAAGCGG chr2L:2967031-2967151 80 7.42e-05 TTGTAAACGA TGCAAACG TGCAACCCTG chrX:3358985-3359105 103 7.42e-05 TTTTTTATGA AGCGCACG AGACCATCAT chr3R:30387994-30388114 41 8.90e-05 CTCAATGTGA TACACACG TCCTCAATAT chr3R:25027270-25027390 53 8.90e-05 GCGATATATG TACACACG GCACCTGGCA chr3R:10098646-10098766 98 1.01e-04 AATACACACT TGCGCACA TACAGCGACA chr2R:6811784-6811904 35 1.11e-04 cgcacacaca cgcacacg cacacacaca chr2R:23611942-23612062 90 1.11e-04 GCAAGATCCA CGCACACG GCTCGAAAAT chr2R:20888865-20888985 54 1.24e-04 ACACAAAGAA TGCGAACG GAAGTAGGTA chr2L:6084962-6085082 112 1.24e-04 ATGACCGATA TGCGAACG A chr3L:18996638-18996758 64 1.36e-04 GCGATGGTGT TACGCACG TGAAGCGGTT chr2L:8289927-8290047 50 1.36e-04 TGTATACCCC TACGCACG GACATTCTCA chr2R:24603575-24603695 29 1.54e-04 TCATCCCTGC TGCACGCG ACCCACCATT chr2R:11646060-11646180 72 1.69e-04 TTAACTCTTC AGCACACA CACTCTCTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCRCACG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:8525895-8526015 1.2e-05 40_[+1]_72 chrX:16836371-16836491 1.2e-05 57_[+1]_55 chr2R:23979520-23979640 1.2e-05 90_[+1]_22 chr2L:3862741-3862861 1.2e-05 91_[+1]_21 chrX:18512356-18512476 1.2e-05 24_[+1]_88 chr2L:8697904-8698024 1.2e-05 105_[+1]_7 chrX:11858997-11859117 1.2e-05 57_[+1]_55 chr3L:15824728-15824848 1.2e-05 56_[+1]_56 chrX:3832380-3832500 1.2e-05 28_[+1]_84 chrX:7930541-7930661 1.2e-05 58_[+1]_54 chr3R:30391153-30391273 1.2e-05 72_[+1]_40 chr3R:8316867-8316987 1.2e-05 69_[+1]_43 chr3L:2090059-2090179 1.2e-05 68_[+1]_44 chr3R:7117729-7117849 1.2e-05 41_[+1]_71 chr3R:7116668-7116788 1.2e-05 64_[+1]_48 chr3L:15336644-15336764 2.2e-05 36_[+1]_76 chr2R:9407621-9407741 2.2e-05 56_[+1]_56 chr2R:14486467-14486587 2.2e-05 13_[+1]_99 chr2L:19402064-19402184 2.2e-05 20_[+1]_92 chr2R:24243212-24243332 2.2e-05 32_[+1]_80 chrX:13332764-13332884 2.2e-05 46_[+1]_66 chr3R:22042147-22042267 2.2e-05 68_[+1]_44 chr3R:20360162-20360282 2.2e-05 46_[+1]_66 chr3L:3309003-3309123 2.2e-05 34_[+1]_78 chr2L:19404896-19405016 2.2e-05 60_[+1]_52 chr3L:14545832-14545952 3.5e-05 16_[+1]_96 chr3R:17719374-17719494 3.5e-05 28_[+1]_84 chr3L:15823955-15824075 3.5e-05 66_[+1]_46 chr2L:15248272-15248392 3.5e-05 31_[+1]_81 chr3R:21263294-21263414 4.9e-05 97_[+1]_15 chr3L:8347521-8347641 4.9e-05 40_[+1]_72 chr3R:17078174-17078294 4.9e-05 41_[+1]_71 chr2R:16159117-16159237 4.9e-05 100_[+1]_12 chr2R:15675851-15675971 7.4e-05 9_[+1]_103 chr3R:19096946-19097066 7.4e-05 9_[+1]_103 chr2L:2967031-2967151 7.4e-05 79_[+1]_33 chrX:3358985-3359105 7.4e-05 102_[+1]_10 chr3R:30387994-30388114 8.9e-05 40_[+1]_72 chr3R:25027270-25027390 8.9e-05 52_[+1]_60 chr3R:10098646-10098766 0.0001 97_[+1]_15 chr2R:6811784-6811904 0.00011 34_[+1]_78 chr2R:23611942-23612062 0.00011 89_[+1]_23 chr2R:20888865-20888985 0.00012 53_[+1]_59 chr2L:6084962-6085082 0.00012 111_[+1]_1 chr3L:18996638-18996758 0.00014 63_[+1]_49 chr2L:8289927-8290047 0.00014 49_[+1]_63 chr2R:24603575-24603695 0.00015 28_[+1]_84 chr2R:11646060-11646180 0.00017 71_[+1]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCRCACG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCRCACG width=8 seqs=48 chr3L:8525895-8526015 ( 41) TGCACACG 1 chrX:16836371-16836491 ( 58) TGCACACG 1 chr2R:23979520-23979640 ( 91) TGCACACG 1 chr2L:3862741-3862861 ( 92) TGCACACG 1 chrX:18512356-18512476 ( 25) TGCACACG 1 chr2L:8697904-8698024 ( 106) TGCACACG 1 chrX:11858997-11859117 ( 58) TGCACACG 1 chr3L:15824728-15824848 ( 57) TGCACACG 1 chrX:3832380-3832500 ( 29) TGCACACG 1 chrX:7930541-7930661 ( 59) TGCACACG 1 chr3R:30391153-30391273 ( 73) TGCACACG 1 chr3R:8316867-8316987 ( 70) TGCACACG 1 chr3L:2090059-2090179 ( 69) TGCACACG 1 chr3R:7117729-7117849 ( 42) TGCACACG 1 chr3R:7116668-7116788 ( 65) TGCACACG 1 chr3L:15336644-15336764 ( 37) TGCGCACG 1 chr2R:9407621-9407741 ( 57) TGCGCACG 1 chr2R:14486467-14486587 ( 14) TGCGCACG 1 chr2L:19402064-19402184 ( 21) TGCGCACG 1 chr2R:24243212-24243332 ( 33) TGCGCACG 1 chrX:13332764-13332884 ( 47) TGCGCACG 1 chr3R:22042147-22042267 ( 69) TGCGCACG 1 chr3R:20360162-20360282 ( 47) TGCGCACG 1 chr3L:3309003-3309123 ( 35) TGCGCACG 1 chr2L:19404896-19405016 ( 61) TGCGCACG 1 chr3L:14545832-14545952 ( 17) AGCACACG 1 chr3R:17719374-17719494 ( 29) AGCACACG 1 chr3L:15823955-15824075 ( 67) AGCACACG 1 chr2L:15248272-15248392 ( 32) AGCACACG 1 chr3R:21263294-21263414 ( 98) TGCACACA 1 chr3L:8347521-8347641 ( 41) TGCACACA 1 chr3R:17078174-17078294 ( 42) TGCACACA 1 chr2R:16159117-16159237 ( 101) TGCACACA 1 chr2R:15675851-15675971 ( 10) TGCAAACG 1 chr3R:19096946-19097066 ( 10) TGCAAACG 1 chr2L:2967031-2967151 ( 80) TGCAAACG 1 chrX:3358985-3359105 ( 103) AGCGCACG 1 chr3R:30387994-30388114 ( 41) TACACACG 1 chr3R:25027270-25027390 ( 53) TACACACG 1 chr3R:10098646-10098766 ( 98) TGCGCACA 1 chr2R:6811784-6811904 ( 35) CGCACACG 1 chr2R:23611942-23612062 ( 90) CGCACACG 1 chr2R:20888865-20888985 ( 54) TGCGAACG 1 chr2L:6084962-6085082 ( 112) TGCGAACG 1 chr3L:18996638-18996758 ( 64) TACGCACG 1 chr2L:8289927-8290047 ( 50) TACGCACG 1 chr2R:24603575-24603695 ( 29) TGCACGCG 1 chr2R:11646060-11646180 ( 72) AGCACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCRCACG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3 E= 1.6e-020 -113 -245 -1223 162 -172 -1223 202 -1223 -1223 214 -1223 -1223 128 -1223 56 -1223 -140 198 -1223 -1223 183 -1223 -344 -1223 -1223 214 -1223 -1223 -113 -1223 195 -1223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCRCACG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 1.6e-020 0.125000 0.041667 0.000000 0.833333 0.083333 0.000000 0.916667 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.104167 0.895833 0.000000 0.000000 0.979167 0.000000 0.020833 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCRCACG MEME-1 regular expression -------------------------------------------------------------------------------- TGC[AG]CACG -------------------------------------------------------------------------------- Time 7.37 secs. ******************************************************************************** ******************************************************************************** MOTIF YGTKTGYD MEME-2 width = 8 sites = 72 llr = 549 E-value = 2.5e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGTKTGYD MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::4 pos.-specific C 4:1:::61 probability G :a:6:a:3 matrix T 6:94a:42 bits 2.1 * * 1.9 * ** 1.7 * ** 1.5 ** ** Relative 1.3 ** ** Entropy 1.1 ******* (11.0 bits) 0.9 ******* 0.6 ******* 0.4 ******* 0.2 ******* 0.0 -------- Multilevel TGTGTGCA consensus C T TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTKTGYD MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:22755403-22755523 89 1.44e-05 TTTAGCGTGC TGTGTGCA ATTGATTCCG chr2R:13336756-13336876 90 2.64e-05 GCTCTGCCCA TGTGTGCG TACATGTACG chr3L:11534494-11534614 51 2.64e-05 GCGCTTTGAT TGTGTGCG CGGGAGAGAG chr3L:14988380-14988500 39 2.64e-05 ACATATGGTA TGTGTGCG TGGATGTAGT chr3R:28552358-28552478 38 2.64e-05 TTTTGCTCGA TGTGTGCG TGTGCGAGTG chr3L:18996638-18996758 36 3.84e-05 ACGTGTTGGT CGTGTGCA GCTGTCGGCG chr3R:9388114-9388234 62 3.84e-05 TTTTGCGGGG CGTGTGCA GTAGTTTTGA chrX:15498019-15498139 91 3.84e-05 TTGCTGGCTA CGTGTGCA TATCGCcata chr3R:30386953-30387073 92 3.84e-05 CGTGTAGTGC CGTGTGCA AAAAGCATGG chr2L:19407869-19407989 40 3.84e-05 GTCTTGGCGC CGTGTGCA ATAAATCGTG chr3R:9784452-9784572 33 3.84e-05 CGAGTGGAGA CGTGTGCA GAAGCTTTTG chr3L:9423289-9423409 78 3.84e-05 ACGCGAAGCG CGTGTGCa aaaagaaacg chr3L:23250407-23250527 70 3.84e-05 Tcgagagagc cgtgtgca aaatatcgaa chr2R:6654654-6654774 57 3.84e-05 ACCGGTGTGC CGTGTGCA ATCGCCCATT chr2R:20672632-20672752 85 3.84e-05 CCAAGAAAAC CGTGTGCA CATCGGTGTC chr3R:20534735-20534855 56 3.84e-05 ATAAGAAAGC CGTGTGCA AGTCGATCGG chr2R:24074906-24075026 63 3.84e-05 TTAGTTGTGC CGTGTGCA TCCACAAATA chr2L:19406565-19406685 75 3.84e-05 TCCGACGGGC CGTGTGCA ATATTGTTTA chr4:725224-725344 87 3.84e-05 CTTAGTGGGT CGTGTGCA ACTCTAAATA chr3L:16910605-16910725 60 3.84e-05 GCTTGTGTGT CGTGTGCA CAAGCGCCAC chr2L:2861558-2861678 47 6.58e-05 CAACATTATG TGTTTGCA CTCTCGGTAC chrX:12276701-12276821 102 6.58e-05 TACATCAAGG TGTTTGCA TTACATTAGC chr3L:6612786-6612906 38 6.58e-05 CCCACTGTTC TGTTTGCA TTGCTTATCA chr3L:19263675-19263795 85 6.58e-05 AACAACAACA CGTGTGCG TTCTGTTTAT chr3R:23181118-23181238 34 9.74e-05 AACGTGTATT TGTGTGTA AACAAGACTA chr3L:960737-960857 53 9.74e-05 GAGTGGTTTT TGTTTGCG GAAGGCAAAT chr3R:16558859-16558979 6 9.74e-05 TTCGA TGTGTGTA GTGAGGCGTG chr2R:15675851-15675971 26 1.26e-04 CGTTTCGGTG TGTGTGTG TGTCGAATCT chrX:8409245-8409365 64 1.26e-04 AGACGTATCG TGTGTGCT CAGACTTGTG chr3L:15597172-15597292 64 1.26e-04 TCAATTATCT TGTGTGTG ATATTTCACT chrX:2462097-2462217 108 1.26e-04 gacgtacgTG TGTGTGTG TTTTG chr3R:17078174-17078294 34 1.26e-04 CTTACATATG TGTGTGTG TGCACACATG chr2L:1970619-1970739 107 1.26e-04 TGTGAGTGAG TGTGTGTG CTATTA chr2L:19079876-19079996 12 1.26e-04 ggtgagtgag tgtgtgtg tgGTAAAGCC chr2L:3228857-3228977 41 1.53e-04 TGCTGTAGGT TGTGTGCC ATACAATTTA chr2R:24243212-24243332 57 1.53e-04 GGGCATTTTG CGTTTGCA CGTCAAGGCA chr3L:20954270-20954390 106 1.79e-04 ACTAAAAGTA CGTGTGTA TCTTTTA chr2L:2749204-2749324 32 2.24e-04 GCCCCTTTGA TGTTTGTA TGTCAATATG chr3L:20494021-20494141 24 2.24e-04 AATGTAGGTA TGTTTGTA TTGTCGTTAT chr2L:16530925-16531045 91 2.24e-04 GTGTTTTATC CGTGTGTG TTTTTTTTTT chr2L:5101474-5101594 62 2.24e-04 AATTGGGGGA CGTGTGCT TTTTAAGTGT chrX:18363542-18363662 50 2.24e-04 TTTGTGTGGT CGTGTGTG GGCGGGCGTG chr2L:15247751-15247871 65 2.24e-04 GCAATGCATG TGTTTGTA CTTCGAGGGA chr3L:14354790-14354910 61 2.58e-04 CAATTCCCAT TGTTTGCT GGGTAAACTT chr3L:21055947-21056067 8 2.58e-04 TTTGTTG TGTTTGCT TCTTTGTGGC chrX:11817860-11817980 25 2.58e-04 ATATGATTTT TGTTTGTG TTGTTGTTTT chr3R:22684165-22684285 70 2.58e-04 TTCTTTCCAA TGTTTGTG TTGCCAATGT chr2L:3862741-3862861 32 2.58e-04 GTTCTCGGTT TGTTTGTG TAATTAAACT chrX:16890723-16890843 65 2.58e-04 GATTTGGTGG TGTTTGCT CGGCTTCAAT chrX:3358985-3359105 19 2.58e-04 TCGCAAACAG TGTTTGCT CCTAACATAT chr2L:14395184-14395304 52 2.58e-04 TTTTGTGCTT TGTTTGTG ATTTAGTTTA chr3R:25280115-25280235 46 2.58e-04 AAGCCTGCGA TGTTTGCT TTGGGGATTA chr2L:3121883-3122003 3 2.85e-04 TT CGTGTGCC TGTCTAATTG chr2L:22036956-22037076 25 3.00e-04 GTACACGCCT TGTTTGCC TTTTGCGTCT chr3L:6140281-6140401 79 3.00e-04 TCAATGCGCG TGTTTGCC TACAAGTAGA chr3L:10341674-10341794 21 3.00e-04 AAACATGATT TGTTTGCC GAAGCGCGTG chrX:13332764-13332884 75 3.00e-04 AGTTTTTTTT TGTTTGCC ATTTTGTTTA chr3L:1885549-1885669 70 3.31e-04 TGTGAGTATC TGTGTGTC TGTATCTTAG chr2R:6574691-6574811 95 3.31e-04 CTTTGCCCCG CGTTTGTA AACAAATCGC chr3L:3810081-3810201 54 3.75e-04 ACTGTAGTCC CGTGTGTT TTTGATTTAC chr3R:26908905-26909025 54 4.07e-04 AGTCAAACAC TGTTTGTT GACGTTACCT chr3L:20507719-20507839 100 4.07e-04 TCTGGCCTTT TGTTTGTT GTGCCCGTCA chr2R:23415320-23415440 56 4.07e-04 TTGCACAGCT CGTTTGCC CGTCATCGCA chr2R:20999419-20999539 12 4.07e-04 AGCGTAGTTG TGTTTGTT AGTTTGTGTT chr3R:30102795-30102915 69 4.07e-04 ACtgttcggc tgtttgtt ttggcgttgg chr3R:21199647-21199767 46 4.07e-04 CTGCGTTTGT TGTTTGTT TTACACACAG chr3R:20360162-20360282 38 4.07e-04 CATGTAATTT TGTTTGTT TTGCGCACGT chr3R:30391153-30391273 24 4.68e-04 GAAGGGGCCA CGTTTGTC ATTCCATGCG chr3R:23297231-23297351 42 4.80e-04 GCTACCTTAA TGCGTGCA AGGGAGAGGG chr2L:1654430-1654550 92 4.90e-04 GGTCTGGCAT TGCGTGCG CTGGAAgttg chr3L:19907433-19907553 74 4.90e-04 TTGAATGCAG TGCGTGCG AGCGGGATGG chr3L:1516601-1516721 99 4.90e-04 CACGAACACT TGCGTGCG GGAATATGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTKTGYD MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:22755403-22755523 1.4e-05 88_[+2]_24 chr2R:13336756-13336876 2.6e-05 89_[+2]_23 chr3L:11534494-11534614 2.6e-05 50_[+2]_62 chr3L:14988380-14988500 2.6e-05 38_[+2]_74 chr3R:28552358-28552478 2.6e-05 37_[+2]_75 chr3L:18996638-18996758 3.8e-05 35_[+2]_77 chr3R:9388114-9388234 3.8e-05 61_[+2]_51 chrX:15498019-15498139 3.8e-05 90_[+2]_22 chr3R:30386953-30387073 3.8e-05 91_[+2]_21 chr2L:19407869-19407989 3.8e-05 39_[+2]_73 chr3R:9784452-9784572 3.8e-05 32_[+2]_80 chr3L:9423289-9423409 3.8e-05 77_[+2]_35 chr3L:23250407-23250527 3.8e-05 69_[+2]_43 chr2R:6654654-6654774 3.8e-05 56_[+2]_56 chr2R:20672632-20672752 3.8e-05 84_[+2]_28 chr3R:20534735-20534855 3.8e-05 55_[+2]_57 chr2R:24074906-24075026 3.8e-05 62_[+2]_50 chr2L:19406565-19406685 3.8e-05 74_[+2]_38 chr4:725224-725344 3.8e-05 86_[+2]_26 chr3L:16910605-16910725 3.8e-05 59_[+2]_53 chr2L:2861558-2861678 6.6e-05 46_[+2]_66 chrX:12276701-12276821 6.6e-05 101_[+2]_11 chr3L:6612786-6612906 6.6e-05 37_[+2]_75 chr3L:19263675-19263795 6.6e-05 84_[+2]_28 chr3R:23181118-23181238 9.7e-05 33_[+2]_79 chr3L:960737-960857 9.7e-05 52_[+2]_60 chr3R:16558859-16558979 9.7e-05 5_[+2]_107 chr2R:15675851-15675971 0.00013 25_[+2]_87 chrX:8409245-8409365 0.00013 63_[+2]_49 chr3L:15597172-15597292 0.00013 63_[+2]_49 chrX:2462097-2462217 0.00013 107_[+2]_5 chr3R:17078174-17078294 0.00013 33_[+2]_79 chr2L:1970619-1970739 0.00013 106_[+2]_6 chr2L:19079876-19079996 0.00013 11_[+2]_101 chr2L:3228857-3228977 0.00015 40_[+2]_72 chr2R:24243212-24243332 0.00015 56_[+2]_56 chr3L:20954270-20954390 0.00018 105_[+2]_7 chr2L:2749204-2749324 0.00022 31_[+2]_81 chr3L:20494021-20494141 0.00022 23_[+2]_89 chr2L:16530925-16531045 0.00022 90_[+2]_22 chr2L:5101474-5101594 0.00022 61_[+2]_51 chrX:18363542-18363662 0.00022 49_[+2]_63 chr2L:15247751-15247871 0.00022 64_[+2]_48 chr3L:14354790-14354910 0.00026 60_[+2]_52 chr3L:21055947-21056067 0.00026 7_[+2]_105 chrX:11817860-11817980 0.00026 24_[+2]_88 chr3R:22684165-22684285 0.00026 69_[+2]_43 chr2L:3862741-3862861 0.00026 31_[+2]_81 chrX:16890723-16890843 0.00026 64_[+2]_48 chrX:3358985-3359105 0.00026 18_[+2]_94 chr2L:14395184-14395304 0.00026 51_[+2]_61 chr3R:25280115-25280235 0.00026 45_[+2]_67 chr2L:3121883-3122003 0.00029 2_[+2]_110 chr2L:22036956-22037076 0.0003 24_[+2]_88 chr3L:6140281-6140401 0.0003 78_[+2]_34 chr3L:10341674-10341794 0.0003 20_[+2]_92 chrX:13332764-13332884 0.0003 74_[+2]_38 chr3L:1885549-1885669 0.00033 69_[+2]_43 chr2R:6574691-6574811 0.00033 94_[+2]_18 chr3L:3810081-3810201 0.00037 53_[+2]_59 chr3R:26908905-26909025 0.00041 53_[+2]_59 chr3L:20507719-20507839 0.00041 99_[+2]_13 chr2R:23415320-23415440 0.00041 55_[+2]_57 chr2R:20999419-20999539 0.00041 11_[+2]_101 chr3R:30102795-30102915 0.00041 68_[+2]_44 chr3R:21199647-21199767 0.00041 45_[+2]_67 chr3R:20360162-20360282 0.00041 37_[+2]_75 chr3R:30391153-30391273 0.00047 23_[+2]_89 chr3R:23297231-23297351 0.00048 41_[+2]_71 chr2L:1654430-1654550 0.00049 91_[+2]_21 chr3L:19907433-19907553 0.00049 73_[+2]_39 chr3L:1516601-1516721 0.00049 98_[+2]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTKTGYD MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGTKTGYD width=8 seqs=72 chr3R:22755403-22755523 ( 89) TGTGTGCA 1 chr2R:13336756-13336876 ( 90) TGTGTGCG 1 chr3L:11534494-11534614 ( 51) TGTGTGCG 1 chr3L:14988380-14988500 ( 39) TGTGTGCG 1 chr3R:28552358-28552478 ( 38) TGTGTGCG 1 chr3L:18996638-18996758 ( 36) CGTGTGCA 1 chr3R:9388114-9388234 ( 62) CGTGTGCA 1 chrX:15498019-15498139 ( 91) CGTGTGCA 1 chr3R:30386953-30387073 ( 92) CGTGTGCA 1 chr2L:19407869-19407989 ( 40) CGTGTGCA 1 chr3R:9784452-9784572 ( 33) CGTGTGCA 1 chr3L:9423289-9423409 ( 78) CGTGTGCA 1 chr3L:23250407-23250527 ( 70) CGTGTGCA 1 chr2R:6654654-6654774 ( 57) CGTGTGCA 1 chr2R:20672632-20672752 ( 85) CGTGTGCA 1 chr3R:20534735-20534855 ( 56) CGTGTGCA 1 chr2R:24074906-24075026 ( 63) CGTGTGCA 1 chr2L:19406565-19406685 ( 75) CGTGTGCA 1 chr4:725224-725344 ( 87) CGTGTGCA 1 chr3L:16910605-16910725 ( 60) CGTGTGCA 1 chr2L:2861558-2861678 ( 47) TGTTTGCA 1 chrX:12276701-12276821 ( 102) TGTTTGCA 1 chr3L:6612786-6612906 ( 38) TGTTTGCA 1 chr3L:19263675-19263795 ( 85) CGTGTGCG 1 chr3R:23181118-23181238 ( 34) TGTGTGTA 1 chr3L:960737-960857 ( 53) TGTTTGCG 1 chr3R:16558859-16558979 ( 6) TGTGTGTA 1 chr2R:15675851-15675971 ( 26) TGTGTGTG 1 chrX:8409245-8409365 ( 64) TGTGTGCT 1 chr3L:15597172-15597292 ( 64) TGTGTGTG 1 chrX:2462097-2462217 ( 108) TGTGTGTG 1 chr3R:17078174-17078294 ( 34) TGTGTGTG 1 chr2L:1970619-1970739 ( 107) TGTGTGTG 1 chr2L:19079876-19079996 ( 12) TGTGTGTG 1 chr2L:3228857-3228977 ( 41) TGTGTGCC 1 chr2R:24243212-24243332 ( 57) CGTTTGCA 1 chr3L:20954270-20954390 ( 106) CGTGTGTA 1 chr2L:2749204-2749324 ( 32) TGTTTGTA 1 chr3L:20494021-20494141 ( 24) TGTTTGTA 1 chr2L:16530925-16531045 ( 91) CGTGTGTG 1 chr2L:5101474-5101594 ( 62) CGTGTGCT 1 chrX:18363542-18363662 ( 50) CGTGTGTG 1 chr2L:15247751-15247871 ( 65) TGTTTGTA 1 chr3L:14354790-14354910 ( 61) TGTTTGCT 1 chr3L:21055947-21056067 ( 8) TGTTTGCT 1 chrX:11817860-11817980 ( 25) TGTTTGTG 1 chr3R:22684165-22684285 ( 70) TGTTTGTG 1 chr2L:3862741-3862861 ( 32) TGTTTGTG 1 chrX:16890723-16890843 ( 65) TGTTTGCT 1 chrX:3358985-3359105 ( 19) TGTTTGCT 1 chr2L:14395184-14395304 ( 52) TGTTTGTG 1 chr3R:25280115-25280235 ( 46) TGTTTGCT 1 chr2L:3121883-3122003 ( 3) CGTGTGCC 1 chr2L:22036956-22037076 ( 25) TGTTTGCC 1 chr3L:6140281-6140401 ( 79) TGTTTGCC 1 chr3L:10341674-10341794 ( 21) TGTTTGCC 1 chrX:13332764-13332884 ( 75) TGTTTGCC 1 chr3L:1885549-1885669 ( 70) TGTGTGTC 1 chr2R:6574691-6574811 ( 95) CGTTTGTA 1 chr3L:3810081-3810201 ( 54) CGTGTGTT 1 chr3R:26908905-26909025 ( 54) TGTTTGTT 1 chr3L:20507719-20507839 ( 100) TGTTTGTT 1 chr2R:23415320-23415440 ( 56) CGTTTGCC 1 chr2R:20999419-20999539 ( 12) TGTTTGTT 1 chr3R:30102795-30102915 ( 69) TGTTTGTT 1 chr3R:21199647-21199767 ( 46) TGTTTGTT 1 chr3R:20360162-20360282 ( 38) TGTTTGTT 1 chr3R:30391153-30391273 ( 24) CGTTTGTC 1 chr3R:23297231-23297351 ( 42) TGCGTGCA 1 chr2L:1654430-1654550 ( 92) TGCGTGCG 1 chr3L:19907433-19907553 ( 74) TGCGTGCG 1 chr3L:1516601-1516721 ( 99) TGCGTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTKTGYD MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.46199 E= 2.5e-008 -1281 67 -1281 123 -1281 -1281 214 -1281 -1281 -203 -1281 180 -1281 -1281 137 62 -1281 -1281 -1281 188 -1281 -1281 214 -1281 -1281 143 -1281 52 50 -86 37 -48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTKTGYD MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 2.5e-008 0.000000 0.361111 0.000000 0.638889 0.000000 0.000000 1.000000 0.000000 0.000000 0.055556 0.000000 0.944444 0.000000 0.000000 0.583333 0.416667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.611111 0.000000 0.388889 0.388889 0.125000 0.291667 0.194444 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTKTGYD MEME-2 regular expression -------------------------------------------------------------------------------- [TC]GT[GT]TG[CT][AG] -------------------------------------------------------------------------------- Time 13.53 secs. ******************************************************************************** ******************************************************************************** MOTIF WKTTGTTK MEME-3 width = 8 sites = 64 llr = 488 E-value = 4.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif WKTTGTTK MEME-3 Description -------------------------------------------------------------------------------- Simplified A 5::::::: pos.-specific C ::3::3:: probability G :5::a::5 matrix T 557a:7a5 bits 2.1 * 1.9 ** * 1.7 ** * 1.5 ** * Relative 1.3 ** * Entropy 1.1 ******* (11.0 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTTGTTT consensus ATC C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTTGTTK MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:7107868-7107988 88 1.72e-05 CTCCCgtttt tgttgttg ctattgctat chr3L:11295117-11295237 45 1.72e-05 ttttattgca tgttgttg ttgttgtggt chrX:11817860-11817980 98 1.72e-05 CGAGTGGCAG TGTTGTTG TGTTTCAGCT chr3L:19907433-19907553 50 1.72e-05 AAGCACCACT TGTTGTTG ACTTGATTGA chrX:16836371-16836491 34 1.72e-05 CAACGCTTGT TGTTGTTG TCGCAGCTTT chr2L:12498705-12498825 1 1.72e-05 . tgttgttg ctgctgctgc chr3R:30352812-30352932 74 1.72e-05 CGACTATTTC TGTTGTTG ACAGCACTTA chr3R:30102795-30102915 21 1.72e-05 CCTGTGTTGC TGTTGTTG CGCCCGCTAC chr2R:7779478-7779598 102 1.72e-05 GCTTGTGTTT TGTTGTTG TCGCTCTTGT chr3R:30389272-30389392 98 1.72e-05 GGCTAATCTG TGTTGTTG CTTTTTGTAT chr2R:16159117-16159237 5 5.52e-05 AAGC AGTTGTTG CGCTTTATTT chr3R:26908905-26909025 19 5.52e-05 GATATGCTAA TGTTGTTT GGGTTTGGGC chr2L:3323308-3323428 40 5.52e-05 CCCCGAATCT TGTTGTTT GGCCACGGGT chr2L:2909642-2909762 19 5.52e-05 CTCTTGCCTT TGTTGTTT ACGGCCAACT chr2R:19269754-19269874 89 5.52e-05 ATTTGTCGAT TGTTGTTT TCGACTCATG chr3R:21015772-21015892 60 7.60e-05 ATGGAGATAA AGTTGTTT ACAGGAATCC chr3L:14988380-14988500 62 7.60e-05 GTAGTGGGAG AGTTGTTT ACATAGGTGT chr2R:11582059-11582179 75 9.67e-05 TGGACTTGTT TTTTGTTG CATACTTTTC chr3L:8525895-8526015 15 1.42e-04 ATCCATATGT ATTTGTTG TACACACACA chr3R:23181118-23181238 6 1.42e-04 TAAGT ATTTGTTG TGTATATACA chr2L:425624-425744 51 1.42e-04 AGCGCCAAAT ATTTGTTG ATAAATGTTT chrX:2462097-2462217 50 1.42e-04 CCAATTTAAT TTTTGTTT TTATTTGTTT chr2R:13336756-13336876 31 1.42e-04 TTGGTGAGCA ATTTGTTG GGCGATAAGC chr2L:3862741-3862861 52 1.42e-04 ATTAAACTAA ATTTGTTG TGCGTATGTA chrX:13332764-13332884 84 1.42e-04 TTGTTTGCCA TTTTGTTT ACTGAATCGG chr3L:3309003-3309123 98 1.42e-04 GCAAAAGCGC TTTTGTTT TTGGCGTCTC chr2R:15802954-15803074 33 1.42e-04 GCGAGGGGAA ATTTGTTG AAAATTGGGA chr3L:20954270-20954390 75 1.68e-04 AGACCCGAAG ATTTGTTT GCTTTACTTT chr2R:14488420-14488540 54 1.68e-04 GGCCACAAAG ATTTGTTT ACTTCGGATA chr3L:20507719-20507839 38 1.68e-04 TGCTCTTCTT ATTTGTTT AGAAGCTGAA chr3R:29868824-29868944 33 1.68e-04 GCATTTATAC ATTTGTTT ACTTTGTTCG chr2L:16530925-16531045 43 1.68e-04 ATAAACCTTA ATTTGTTT TTAGTTCGTT chr3R:30386953-30387073 73 1.68e-04 TAGTAACGGC ATTTGTTT TCGTGTAGTG chr3R:9390274-9390394 18 1.82e-04 CTAATATTTT TGCTGTTG TTCGGTGGGT chrX:1026606-1026726 17 2.14e-04 ATGGCGTTTT TGCTGTTT CCCCTTTCGA chr2L:13190723-13190843 4 2.14e-04 GCC AGCTGTTG GGCCAAAGCT chr3L:10341674-10341794 86 2.14e-04 GGTCTCCGTT AGCTGTTG CTCAAATATT chr2R:24074906-24075026 23 2.14e-04 ATTCAGAAAG TGCTGTTT TTATTACGCA chr2L:8289927-8290047 89 2.45e-04 CTGCTTGGTT AGCTGTTT AAATATATAT chr3R:19641210-19641330 111 2.45e-04 CCCCCCAGTC AGCTGTTT TA chr2L:19079876-19079996 113 2.45e-04 CCAAGTCACA tgttgctg chr3R:30198962-30199082 60 2.94e-04 TGTAAACATC TTCTGTTG TATGCTAAAC chr2L:3121883-3122003 27 2.94e-04 ATTGCTGGTA TTCTGTTG ACCTTGTCGA chr3R:9891694-9891814 44 2.94e-04 CCATTTGGTG AGTTGCTG ATTGGGACGC chr3R:13441836-13441956 36 2.94e-04 TAACAAAGAT TGTTGCTT TTGGCACCCG chr2L:2749204-2749324 69 2.94e-04 AATAAATGAT TTCTGTTG AGGCCAACAA chrX:15498019-15498139 79 2.94e-04 AGCAAGTCGA AGTTGCTG GCTACGTGTG chr2R:11646060-11646180 39 3.50e-04 CTCGGTTCTT ATCTGTTG CCTCTGCCGA chr3L:19263675-19263795 93 3.50e-04 CACGTGTGCG TTCTGTTT ATCAACAAAA chr2L:18981601-18981721 68 3.50e-04 AATGGATGTT TTCTGTTT CGAAACCAAA chr2L:8697904-8698024 24 3.50e-04 CTTGCAATAA AGTTGCTT TTTTATGGTT chr2R:15675851-15675971 40 3.88e-04 TGTGTGTCGA ATCTGTTT ATTAACTTAT chr3L:17937447-17937567 47 4.26e-04 ACACTTTCGC TTTTGCTT TCAATTTCAT chr3R:14098652-14098772 2 4.26e-04 G TTTTGCTT TGCTTCTTTC chr3L:11355798-11355918 41 4.47e-04 AATTTTCAGT ATTTGCTT AAGCAACTCG chr2L:6818445-6818565 39 4.47e-04 GGAGCAACTT ATTTGCTT TCTGCTGGCT chr2L:7166005-7166125 85 4.47e-04 AAAGAAAAAT ATTTGCTT GAAAATTGCC chr3L:14274822-14274942 6 4.47e-04 TTATT ATTTGCTT ATAAGGCCAA chr3L:1516601-1516721 113 4.59e-04 TGCGGGAATA TGCTGCTG chr2L:6084962-6085082 67 4.59e-04 TCAGATTGTA TGCTGCTG GTGCTGGTGC chr3L:11003045-11003165 72 4.86e-04 GCCCGCCTCC AGCTGCTG CGTCAATATT chr3L:16910605-16910725 46 4.86e-04 TGTTTGGGTG TGCTGCTT GTGTGTCGTG chr2R:14487733-14487853 24 5.00e-04 ACATATGACC AGCTGCTT GCAGCGCGCG chrX:19631678-19631798 44 5.00e-04 CTCAGTTCGC AGCTGCTT CCTTCGCCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTTGTTK MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:7107868-7107988 1.7e-05 87_[+3]_25 chr3L:11295117-11295237 1.7e-05 44_[+3]_68 chrX:11817860-11817980 1.7e-05 97_[+3]_15 chr3L:19907433-19907553 1.7e-05 49_[+3]_63 chrX:16836371-16836491 1.7e-05 33_[+3]_79 chr2L:12498705-12498825 1.7e-05 [+3]_112 chr3R:30352812-30352932 1.7e-05 73_[+3]_39 chr3R:30102795-30102915 1.7e-05 20_[+3]_92 chr2R:7779478-7779598 1.7e-05 101_[+3]_11 chr3R:30389272-30389392 1.7e-05 97_[+3]_15 chr2R:16159117-16159237 5.5e-05 4_[+3]_108 chr3R:26908905-26909025 5.5e-05 18_[+3]_94 chr2L:3323308-3323428 5.5e-05 39_[+3]_73 chr2L:2909642-2909762 5.5e-05 18_[+3]_94 chr2R:19269754-19269874 5.5e-05 88_[+3]_24 chr3R:21015772-21015892 7.6e-05 59_[+3]_53 chr3L:14988380-14988500 7.6e-05 61_[+3]_51 chr2R:11582059-11582179 9.7e-05 74_[+3]_38 chr3L:8525895-8526015 0.00014 14_[+3]_98 chr3R:23181118-23181238 0.00014 5_[+3]_107 chr2L:425624-425744 0.00014 50_[+3]_62 chrX:2462097-2462217 0.00014 49_[+3]_63 chr2R:13336756-13336876 0.00014 30_[+3]_82 chr2L:3862741-3862861 0.00014 51_[+3]_61 chrX:13332764-13332884 0.00014 83_[+3]_29 chr3L:3309003-3309123 0.00014 97_[+3]_15 chr2R:15802954-15803074 0.00014 32_[+3]_80 chr3L:20954270-20954390 0.00017 74_[+3]_38 chr2R:14488420-14488540 0.00017 53_[+3]_59 chr3L:20507719-20507839 0.00017 37_[+3]_75 chr3R:29868824-29868944 0.00017 32_[+3]_80 chr2L:16530925-16531045 0.00017 42_[+3]_70 chr3R:30386953-30387073 0.00017 72_[+3]_40 chr3R:9390274-9390394 0.00018 17_[+3]_95 chrX:1026606-1026726 0.00021 16_[+3]_96 chr2L:13190723-13190843 0.00021 3_[+3]_109 chr3L:10341674-10341794 0.00021 85_[+3]_27 chr2R:24074906-24075026 0.00021 22_[+3]_90 chr2L:8289927-8290047 0.00025 88_[+3]_24 chr3R:19641210-19641330 0.00025 110_[+3]_2 chr2L:19079876-19079996 0.00025 112_[+3] chr3R:30198962-30199082 0.00029 59_[+3]_53 chr2L:3121883-3122003 0.00029 26_[+3]_86 chr3R:9891694-9891814 0.00029 43_[+3]_69 chr3R:13441836-13441956 0.00029 35_[+3]_77 chr2L:2749204-2749324 0.00029 68_[+3]_44 chrX:15498019-15498139 0.00029 78_[+3]_34 chr2R:11646060-11646180 0.00035 38_[+3]_74 chr3L:19263675-19263795 0.00035 92_[+3]_20 chr2L:18981601-18981721 0.00035 67_[+3]_45 chr2L:8697904-8698024 0.00035 23_[+3]_89 chr2R:15675851-15675971 0.00039 39_[+3]_73 chr3L:17937447-17937567 0.00043 46_[+3]_66 chr3R:14098652-14098772 0.00043 1_[+3]_111 chr3L:11355798-11355918 0.00045 40_[+3]_72 chr2L:6818445-6818565 0.00045 38_[+3]_74 chr2L:7166005-7166125 0.00045 84_[+3]_28 chr3L:14274822-14274942 0.00045 5_[+3]_107 chr3L:1516601-1516721 0.00046 112_[+3] chr2L:6084962-6085082 0.00046 66_[+3]_46 chr3L:11003045-11003165 0.00049 71_[+3]_41 chr3L:16910605-16910725 0.00049 45_[+3]_67 chr2R:14487733-14487853 0.0005 23_[+3]_89 chrX:19631678-19631798 0.0005 43_[+3]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTTGTTK MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WKTTGTTK width=8 seqs=64 chr3R:7107868-7107988 ( 88) TGTTGTTG 1 chr3L:11295117-11295237 ( 45) TGTTGTTG 1 chrX:11817860-11817980 ( 98) TGTTGTTG 1 chr3L:19907433-19907553 ( 50) TGTTGTTG 1 chrX:16836371-16836491 ( 34) TGTTGTTG 1 chr2L:12498705-12498825 ( 1) TGTTGTTG 1 chr3R:30352812-30352932 ( 74) TGTTGTTG 1 chr3R:30102795-30102915 ( 21) TGTTGTTG 1 chr2R:7779478-7779598 ( 102) TGTTGTTG 1 chr3R:30389272-30389392 ( 98) TGTTGTTG 1 chr2R:16159117-16159237 ( 5) AGTTGTTG 1 chr3R:26908905-26909025 ( 19) TGTTGTTT 1 chr2L:3323308-3323428 ( 40) TGTTGTTT 1 chr2L:2909642-2909762 ( 19) TGTTGTTT 1 chr2R:19269754-19269874 ( 89) TGTTGTTT 1 chr3R:21015772-21015892 ( 60) AGTTGTTT 1 chr3L:14988380-14988500 ( 62) AGTTGTTT 1 chr2R:11582059-11582179 ( 75) TTTTGTTG 1 chr3L:8525895-8526015 ( 15) ATTTGTTG 1 chr3R:23181118-23181238 ( 6) ATTTGTTG 1 chr2L:425624-425744 ( 51) ATTTGTTG 1 chrX:2462097-2462217 ( 50) TTTTGTTT 1 chr2R:13336756-13336876 ( 31) ATTTGTTG 1 chr2L:3862741-3862861 ( 52) ATTTGTTG 1 chrX:13332764-13332884 ( 84) TTTTGTTT 1 chr3L:3309003-3309123 ( 98) TTTTGTTT 1 chr2R:15802954-15803074 ( 33) ATTTGTTG 1 chr3L:20954270-20954390 ( 75) ATTTGTTT 1 chr2R:14488420-14488540 ( 54) ATTTGTTT 1 chr3L:20507719-20507839 ( 38) ATTTGTTT 1 chr3R:29868824-29868944 ( 33) ATTTGTTT 1 chr2L:16530925-16531045 ( 43) ATTTGTTT 1 chr3R:30386953-30387073 ( 73) ATTTGTTT 1 chr3R:9390274-9390394 ( 18) TGCTGTTG 1 chrX:1026606-1026726 ( 17) TGCTGTTT 1 chr2L:13190723-13190843 ( 4) AGCTGTTG 1 chr3L:10341674-10341794 ( 86) AGCTGTTG 1 chr2R:24074906-24075026 ( 23) TGCTGTTT 1 chr2L:8289927-8290047 ( 89) AGCTGTTT 1 chr3R:19641210-19641330 ( 111) AGCTGTTT 1 chr2L:19079876-19079996 ( 113) TGTTGCTG 1 chr3R:30198962-30199082 ( 60) TTCTGTTG 1 chr2L:3121883-3122003 ( 27) TTCTGTTG 1 chr3R:9891694-9891814 ( 44) AGTTGCTG 1 chr3R:13441836-13441956 ( 36) TGTTGCTT 1 chr2L:2749204-2749324 ( 69) TTCTGTTG 1 chrX:15498019-15498139 ( 79) AGTTGCTG 1 chr2R:11646060-11646180 ( 39) ATCTGTTG 1 chr3L:19263675-19263795 ( 93) TTCTGTTT 1 chr2L:18981601-18981721 ( 68) TTCTGTTT 1 chr2L:8697904-8698024 ( 24) AGTTGCTT 1 chr2R:15675851-15675971 ( 40) ATCTGTTT 1 chr3L:17937447-17937567 ( 47) TTTTGCTT 1 chr3R:14098652-14098772 ( 2) TTTTGCTT 1 chr3L:11355798-11355918 ( 41) ATTTGCTT 1 chr2L:6818445-6818565 ( 39) ATTTGCTT 1 chr2L:7166005-7166125 ( 85) ATTTGCTT 1 chr3L:14274822-14274942 ( 6) ATTTGCTT 1 chr3L:1516601-1516721 ( 113) TGCTGCTG 1 chr2L:6084962-6085082 ( 67) TGCTGCTG 1 chr3L:11003045-11003165 ( 72) AGCTGCTG 1 chr3L:16910605-16910725 ( 46) TGCTGCTT 1 chr2R:14487733-14487853 ( 24) AGCTGCTT 1 chrX:19631678-19631798 ( 44) AGCTGCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTTGTTK MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5219 E= 4.8e+000 82 -1264 -1264 92 -1264 -1264 127 74 -1264 46 -1264 134 -1264 -1264 -1264 188 -1264 -1264 214 -1264 -1264 22 -1264 143 -1264 -1264 -1264 188 -1264 -1264 110 92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTTGTTK MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 64 E= 4.8e+000 0.484375 0.000000 0.000000 0.515625 0.000000 0.000000 0.546875 0.453125 0.000000 0.312500 0.000000 0.687500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.265625 0.000000 0.734375 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.484375 0.515625 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTTGTTK MEME-3 regular expression -------------------------------------------------------------------------------- [TA][GT][TC]TG[TC]T[TG] -------------------------------------------------------------------------------- Time 19.55 secs. ******************************************************************************** ******************************************************************************** MOTIF VRCAAAYA MEME-4 width = 8 sites = 58 llr = 461 E-value = 1.0e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif VRCAAAYA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 36:a8a:a pos.-specific C 4:a:2:6: probability G 24:::::: matrix T ::::::4: bits 2.1 * 1.9 ** * * 1.7 ** * * 1.5 ** * * Relative 1.3 ** * * Entropy 1.1 ******* (11.5 bits) 0.9 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACAAACA consensus AG C T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRCAAAYA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:31945772-31945892 72 1.81e-05 GAAGTCAGCT CACAAACA CAGCCAAACA chrX:15568531-15568651 69 1.81e-05 ATTTATTCGG CACAAACA ACCTGATTAT chr3R:5107108-5107228 83 1.81e-05 ACTAGGCAAA CACAAACA GGGGCTACGA chr2R:12592164-12592284 111 1.81e-05 cacacacaca cacaaaca ct chr2L:2906253-2906373 54 3.30e-05 GTACTTAAAC CGCAAACA TGACAAACTG chr2L:19363756-19363876 103 3.30e-05 GCATGTGGAT CGCAAACA AAGTTGCAAA chr3R:7107868-7107988 23 3.30e-05 CGCAAACACT CGCAAACA CAATCACAAA chrX:3358985-3359105 10 3.30e-05 TTCTTTTCT CGCAAACA GTGTTTGCTC chr2L:18981601-18981721 109 3.30e-05 ACATGGCCTG CGCAAACA CAGG chr2L:3228857-3228977 77 5.48e-05 TGCAAAGCCA AACAAACA GGCCGATAAC chr2R:11403185-11403305 34 5.48e-05 AGCTGGTATT AACAAACA ATTGACAAAT chr3R:12398854-12398974 69 5.48e-05 AAATATAACT AACAAACA ATCGGAAGCA chr2R:23979520-23979640 28 5.48e-05 ACTTAAAGCA AACAAACA CAGTCGAAAG chr2L:20327515-20327635 22 5.48e-05 CGGGCGCCTA AACAAACA TTAAGCATCT chrX:362239-362359 102 5.48e-05 ACTGTCGAAA AACAAACA GAGGAACAAA chrX:3832380-3832500 78 5.48e-05 caggcagaca aacaaaca aacggtgcaa chr3R:30198962-30199082 15 7.28e-05 GTAATGCCAA AGCAAACA ACCAAAGGCT chr2L:5303764-5303884 21 7.28e-05 AGCACACCAC AGCAAACA GAGTGGAGTG chr3L:14988380-14988500 95 7.28e-05 AAGCACCTGT AGCAAACA CAGCACAAAT chr3R:21015772-21015892 92 9.07e-05 CGAGCACAAA GACAAACA GCAATGGCAA chr2R:22200013-22200133 47 1.12e-04 GCTAATGGGC CACAAATA TCGACTGGGA chr2R:6603133-6603253 107 1.12e-04 AACAGCTCCG CACAAATA TTTTCA chr2L:20016569-20016689 88 1.12e-04 GAAATAGTTT CACAAATA AAGACAACTA chr3R:28552358-28552478 94 1.12e-04 AACATAACTG CACAAATA TGTACATAGC chr2R:24074906-24075026 73 1.12e-04 CGTGTGCATC CACAAATA TAGACTACCT chr3L:8525895-8526015 25 1.42e-04 ATTTGTTGTA CACACACA TACGCAGATG chr2L:12076099-12076219 5 1.42e-04 AAGC GGCAAACA ACGCCCAATT chr2L:20935498-20935618 79 1.42e-04 CAGCTCTGAa cacacaca gatacacacc chrX:16836371-16836491 66 1.42e-04 TCTGCACACG CACACACA AAAGCACTGA chr2R:6811784-6811904 43 1.42e-04 cacgcacacg cacacaca cacagacTGG chrX:12276701-12276821 5 1.42e-04 caca cacacaca cacacgcaca chr3L:8379317-8379437 59 1.42e-04 ATGTTTGTCG GGCAAACA ATGGGGCGGA chr3R:12369895-12370015 76 1.42e-04 CAAGCCGGCC GGCAAACA TTGATATCAG chr2R:11646060-11646180 19 1.42e-04 CGGCGGAGCT GGCAAACA TACTCGGTTC chr2R:14486467-14486587 55 1.42e-04 AGCGCCCACA CACACACA TATATATATA chr3L:16911263-16911383 85 1.42e-04 CAAAAACTAA CACACACA TCGATATACA chr2L:16530925-16531045 1 1.42e-04 . CACACACA AGCAGAGTTA chr3R:25280115-25280235 29 1.42e-04 GGCTTTTATG GGCAAACA AGCCTGCGAT chr3L:9423289-9423409 21 1.42e-04 AACCCGCTGG CACACACA AACCGTAACC chr2R:14488420-14488540 101 1.60e-04 AAATTTGATA CGCAAATA GGAGTGGAAA chr2R:21640421-21640541 74 1.60e-04 CTCGGCGCTT CGCAAATA ATACTCGTTC chr2R:14487733-14487853 74 1.99e-04 GTTAATCTTT AACAAATA TAACCTTGAA chr3R:20273686-20273806 113 1.99e-04 TAAATTATAC AACAAATA chr3R:9219501-9219621 112 1.99e-04 GAAATCTCTT AACAAATA T chr3L:6140281-6140401 56 1.99e-04 CCCAACAAAA AACAAATA TTTGGTCAAT chr2L:7407429-7407549 3 1.99e-04 aa aacaaaTA TTATTTTCAA chr3R:6765012-6765132 59 2.17e-04 GGCTTGTGCA AACACACA TTAATATGCT chrX:3024669-3024789 111 2.38e-04 TATGGCTTGC AGCAAATA TG chr3R:14284454-14284574 108 2.38e-04 CGGCCACCGA AGCAAATA GAAAT chrX:12947794-12947914 24 2.38e-04 ACGCGAAATC AGCAAATA GACCGGAAGT chr3L:8077348-8077468 99 2.75e-04 CGAAGACAAC GACAAATA CAGAAGAGAT chr2L:7133940-7134060 65 2.89e-04 GATGCACGCA GACACACA AGCGATACAC chr2L:22036956-22037076 103 3.25e-04 TTACACATCT GGCAAATA TTTACATAAG chr3L:960737-960857 64 3.25e-04 GTTTGCGGAA GGCAAATA CAATTACAGA chr3L:14274822-14274942 41 3.25e-04 ATTTGCCGCC GGCAAATA TTTAAAAGGT chr3R:9891694-9891814 14 3.37e-04 gccccaacTG GGCACACA CTCTCACTAT chr2R:8272876-8272996 111 3.92e-04 AGCGGCGGGC AGCACATA CT chr3L:2090059-2090179 105 4.24e-04 TCATAGATGG GGCACATA ATACCTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRCAAAYA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:31945772-31945892 1.8e-05 71_[+4]_41 chrX:15568531-15568651 1.8e-05 68_[+4]_44 chr3R:5107108-5107228 1.8e-05 82_[+4]_30 chr2R:12592164-12592284 1.8e-05 110_[+4]_2 chr2L:2906253-2906373 3.3e-05 53_[+4]_59 chr2L:19363756-19363876 3.3e-05 102_[+4]_10 chr3R:7107868-7107988 3.3e-05 22_[+4]_90 chrX:3358985-3359105 3.3e-05 9_[+4]_103 chr2L:18981601-18981721 3.3e-05 108_[+4]_4 chr2L:3228857-3228977 5.5e-05 76_[+4]_36 chr2R:11403185-11403305 5.5e-05 33_[+4]_79 chr3R:12398854-12398974 5.5e-05 68_[+4]_44 chr2R:23979520-23979640 5.5e-05 27_[+4]_85 chr2L:20327515-20327635 5.5e-05 21_[+4]_91 chrX:362239-362359 5.5e-05 101_[+4]_11 chrX:3832380-3832500 5.5e-05 77_[+4]_35 chr3R:30198962-30199082 7.3e-05 14_[+4]_98 chr2L:5303764-5303884 7.3e-05 20_[+4]_92 chr3L:14988380-14988500 7.3e-05 94_[+4]_18 chr3R:21015772-21015892 9.1e-05 91_[+4]_21 chr2R:22200013-22200133 0.00011 46_[+4]_66 chr2R:6603133-6603253 0.00011 106_[+4]_6 chr2L:20016569-20016689 0.00011 87_[+4]_25 chr3R:28552358-28552478 0.00011 93_[+4]_19 chr2R:24074906-24075026 0.00011 72_[+4]_40 chr3L:8525895-8526015 0.00014 24_[+4]_88 chr2L:12076099-12076219 0.00014 4_[+4]_108 chr2L:20935498-20935618 0.00014 78_[+4]_34 chrX:16836371-16836491 0.00014 65_[+4]_47 chr2R:6811784-6811904 0.00014 42_[+4]_70 chrX:12276701-12276821 0.00014 4_[+4]_108 chr3L:8379317-8379437 0.00014 58_[+4]_54 chr3R:12369895-12370015 0.00014 75_[+4]_37 chr2R:11646060-11646180 0.00014 18_[+4]_94 chr2R:14486467-14486587 0.00014 54_[+4]_58 chr3L:16911263-16911383 0.00014 84_[+4]_28 chr2L:16530925-16531045 0.00014 [+4]_112 chr3R:25280115-25280235 0.00014 28_[+4]_84 chr3L:9423289-9423409 0.00014 20_[+4]_92 chr2R:14488420-14488540 0.00016 100_[+4]_12 chr2R:21640421-21640541 0.00016 73_[+4]_39 chr2R:14487733-14487853 0.0002 73_[+4]_39 chr3R:20273686-20273806 0.0002 112_[+4] chr3R:9219501-9219621 0.0002 111_[+4]_1 chr3L:6140281-6140401 0.0002 55_[+4]_57 chr2L:7407429-7407549 0.0002 2_[+4]_110 chr3R:6765012-6765132 0.00022 58_[+4]_54 chrX:3024669-3024789 0.00024 110_[+4]_2 chr3R:14284454-14284574 0.00024 107_[+4]_5 chrX:12947794-12947914 0.00024 23_[+4]_89 chr3L:8077348-8077468 0.00027 98_[+4]_14 chr2L:7133940-7134060 0.00029 64_[+4]_48 chr2L:22036956-22037076 0.00033 102_[+4]_10 chr3L:960737-960857 0.00033 63_[+4]_49 chr3L:14274822-14274942 0.00033 40_[+4]_72 chr3R:9891694-9891814 0.00034 13_[+4]_99 chr2R:8272876-8272996 0.00039 110_[+4]_2 chr3L:2090059-2090179 0.00042 104_[+4]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRCAAAYA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VRCAAAYA width=8 seqs=58 chr3R:31945772-31945892 ( 72) CACAAACA 1 chrX:15568531-15568651 ( 69) CACAAACA 1 chr3R:5107108-5107228 ( 83) CACAAACA 1 chr2R:12592164-12592284 ( 111) CACAAACA 1 chr2L:2906253-2906373 ( 54) CGCAAACA 1 chr2L:19363756-19363876 ( 103) CGCAAACA 1 chr3R:7107868-7107988 ( 23) CGCAAACA 1 chrX:3358985-3359105 ( 10) CGCAAACA 1 chr2L:18981601-18981721 ( 109) CGCAAACA 1 chr2L:3228857-3228977 ( 77) AACAAACA 1 chr2R:11403185-11403305 ( 34) AACAAACA 1 chr3R:12398854-12398974 ( 69) AACAAACA 1 chr2R:23979520-23979640 ( 28) AACAAACA 1 chr2L:20327515-20327635 ( 22) AACAAACA 1 chrX:362239-362359 ( 102) AACAAACA 1 chrX:3832380-3832500 ( 78) AACAAACA 1 chr3R:30198962-30199082 ( 15) AGCAAACA 1 chr2L:5303764-5303884 ( 21) AGCAAACA 1 chr3L:14988380-14988500 ( 95) AGCAAACA 1 chr3R:21015772-21015892 ( 92) GACAAACA 1 chr2R:22200013-22200133 ( 47) CACAAATA 1 chr2R:6603133-6603253 ( 107) CACAAATA 1 chr2L:20016569-20016689 ( 88) CACAAATA 1 chr3R:28552358-28552478 ( 94) CACAAATA 1 chr2R:24074906-24075026 ( 73) CACAAATA 1 chr3L:8525895-8526015 ( 25) CACACACA 1 chr2L:12076099-12076219 ( 5) GGCAAACA 1 chr2L:20935498-20935618 ( 79) CACACACA 1 chrX:16836371-16836491 ( 66) CACACACA 1 chr2R:6811784-6811904 ( 43) CACACACA 1 chrX:12276701-12276821 ( 5) CACACACA 1 chr3L:8379317-8379437 ( 59) GGCAAACA 1 chr3R:12369895-12370015 ( 76) GGCAAACA 1 chr2R:11646060-11646180 ( 19) GGCAAACA 1 chr2R:14486467-14486587 ( 55) CACACACA 1 chr3L:16911263-16911383 ( 85) CACACACA 1 chr2L:16530925-16531045 ( 1) CACACACA 1 chr3R:25280115-25280235 ( 29) GGCAAACA 1 chr3L:9423289-9423409 ( 21) CACACACA 1 chr2R:14488420-14488540 ( 101) CGCAAATA 1 chr2R:21640421-21640541 ( 74) CGCAAATA 1 chr2R:14487733-14487853 ( 74) AACAAATA 1 chr3R:20273686-20273806 ( 113) AACAAATA 1 chr3R:9219501-9219621 ( 112) AACAAATA 1 chr3L:6140281-6140401 ( 56) AACAAATA 1 chr2L:7407429-7407549 ( 3) AACAAATA 1 chr3R:6765012-6765132 ( 59) AACACACA 1 chrX:3024669-3024789 ( 111) AGCAAATA 1 chr3R:14284454-14284574 ( 108) AGCAAATA 1 chrX:12947794-12947914 ( 24) AGCAAATA 1 chr3L:8077348-8077468 ( 99) GACAAATA 1 chr2L:7133940-7134060 ( 65) GACACACA 1 chr2L:22036956-22037076 ( 103) GGCAAATA 1 chr3L:960737-960857 ( 64) GGCAAATA 1 chr3L:14274822-14274942 ( 41) GGCAAATA 1 chr3R:9891694-9891814 ( 14) GGCACACA 1 chr2R:8272876-8272996 ( 111) AGCACATA 1 chr3L:2090059-2090179 ( 105) GGCACATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRCAAAYA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6151 E= 1.0e-004 33 92 -1 -1250 109 -1250 87 -1250 -1250 214 -1250 -1250 186 -1250 -1250 -1250 147 9 -1250 -1250 186 -1250 -1250 -1250 -1250 149 -1250 41 186 -1250 -1250 -1250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRCAAAYA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 1.0e-004 0.344828 0.431034 0.224138 0.000000 0.586207 0.000000 0.413793 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.758621 0.241379 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.637931 0.000000 0.362069 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRCAAAYA MEME-4 regular expression -------------------------------------------------------------------------------- [CAG][AG]CA[AC]A[CT]A -------------------------------------------------------------------------------- Time 25.44 secs. ******************************************************************************** ******************************************************************************** MOTIF RTAAAYAW MEME-5 width = 8 sites = 33 llr = 283 E-value = 8.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTAAAYAW MEME-5 Description -------------------------------------------------------------------------------- Simplified A 4:aaa:a6 pos.-specific C :::::4:: probability G 6::::::: matrix T :a:::6:4 bits 2.1 1.9 **** * 1.7 **** * 1.5 **** * Relative 1.3 **** * Entropy 1.1 ******* (12.4 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTAAATAA consensus A C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTAAAYAW MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2861558-2861678 67 2.58e-05 CTCGGTACGT GTAAATAA AACACGACAA chr3L:12835657-12835777 66 2.58e-05 AAGTAAACAA GTAAATAA AATAATATGT chr3R:9891694-9891814 81 2.58e-05 TGTTCTCACT GTAAATAA ATAAGGGCCC chr3R:14284454-14284574 44 2.58e-05 AAAACGCACT GTAAATAA AGGTGTAAAT chr3R:6765012-6765132 80 2.58e-05 ATATGCTTAA GTAAATAA CGTTCTCTGA chr3R:21825282-21825402 41 2.58e-05 TATTTGACTT GTAAATAA ATAAACAAGG chr2L:19998312-19998432 106 4.74e-05 TGCGTATACG GTAAACAA TTTGAAA chr2R:6464945-6465065 58 4.74e-05 ctgtacaaat gtaaacaa cagcataaaa chr2R:9266577-9266697 38 4.74e-05 ATTCGGAAAT GTAAACAA ACCAAACGTA chr2R:6811784-6811904 4 4.74e-05 ATT GTAAACAA CCCACGCCTA chrX:12889287-12889407 47 4.74e-05 AAGGGGAGAA GTAAACAA AGGCGACGAT chr3R:31608189-31608309 43 4.74e-05 CTTTTTACAT GTAAACAA GTGTGGAGAG chr3L:8834614-8834734 73 4.74e-05 GAGCTGAAGT GTAAACAA GAATGGAAGT chr2L:20935498-20935618 56 7.30e-05 GAGTAATAAG GTAAATAT ATGCTCAGCT chr2R:21082664-21082784 105 7.30e-05 GAACAAGAAA GTAAATAT CTACAAAA chr3R:17759956-17760076 70 7.30e-05 CGTCTGATGT GTAAATAT TGGCCCGGCC chrX:3354506-3354626 73 7.30e-05 AGCTGCCACT GTAAATAT TTACATGTGC chr2L:7166005-7166125 104 7.30e-05 AAAATTGCCT GTAAATAT TTGAGTCAG chr3R:12701333-12701453 84 7.30e-05 AATTGGAATA GTAAATAT ACATATGTAT chr2L:3228857-3228977 11 1.04e-04 GCTATTGACA ATAAATAA TTAGTAACGT chr3L:11003045-11003165 95 1.04e-04 ATATTGATCC ATAAATAA CAGATCCCCC chr2R:14488420-14488540 12 1.04e-04 CGAGAAATAA ATAAATAA TGAAAACTGT chr3R:9390274-9390394 66 1.04e-04 GACACGGCTC ATAAATAA ACACTTCTAT chrX:11858997-11859117 108 1.04e-04 TAATTGAACG ATAAATAA TGATA chr3R:30102795-30102915 50 1.04e-04 ACTGGAAATT ATAAATAA TACtgttcgg chr2L:16680464-16680584 97 1.26e-04 AAATAACGGA GTAAACAT TCAGTCTCAG chr3R:30198962-30199082 51 1.26e-04 TTTTCTTACT GTAAACAT CTTCTGTTGT chr2R:19269754-19269874 45 1.52e-04 CGCTTCACAG ATAAACAA GCGGCCAACT chr2R:7755051-7755171 12 1.52e-04 CCCTGTCGAA ATAAACAA AATGAGTTGA chr2L:8289927-8290047 29 1.83e-04 ATGTATGTAC ATAAATAT GTATGTATAC chr3L:20494021-20494141 76 1.83e-04 CAATGCCATA ATAAATAT TATAAATACA chr2L:14395184-14395304 69 1.83e-04 GATTTAGTTT ATAAATAT TTCCCAACCC chr2R:23415320-23415440 38 2.09e-04 CGAAACGTTG ATAAACAT TTGCACAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTAAAYAW MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2861558-2861678 2.6e-05 66_[+5]_46 chr3L:12835657-12835777 2.6e-05 65_[+5]_47 chr3R:9891694-9891814 2.6e-05 80_[+5]_32 chr3R:14284454-14284574 2.6e-05 43_[+5]_69 chr3R:6765012-6765132 2.6e-05 79_[+5]_33 chr3R:21825282-21825402 2.6e-05 40_[+5]_72 chr2L:19998312-19998432 4.7e-05 105_[+5]_7 chr2R:6464945-6465065 4.7e-05 57_[+5]_55 chr2R:9266577-9266697 4.7e-05 37_[+5]_75 chr2R:6811784-6811904 4.7e-05 3_[+5]_109 chrX:12889287-12889407 4.7e-05 46_[+5]_66 chr3R:31608189-31608309 4.7e-05 42_[+5]_70 chr3L:8834614-8834734 4.7e-05 72_[+5]_40 chr2L:20935498-20935618 7.3e-05 55_[+5]_57 chr2R:21082664-21082784 7.3e-05 104_[+5]_8 chr3R:17759956-17760076 7.3e-05 69_[+5]_43 chrX:3354506-3354626 7.3e-05 72_[+5]_40 chr2L:7166005-7166125 7.3e-05 103_[+5]_9 chr3R:12701333-12701453 7.3e-05 83_[+5]_29 chr2L:3228857-3228977 0.0001 10_[+5]_102 chr3L:11003045-11003165 0.0001 94_[+5]_18 chr2R:14488420-14488540 0.0001 11_[+5]_101 chr3R:9390274-9390394 0.0001 65_[+5]_47 chrX:11858997-11859117 0.0001 107_[+5]_5 chr3R:30102795-30102915 0.0001 49_[+5]_63 chr2L:16680464-16680584 0.00013 96_[+5]_16 chr3R:30198962-30199082 0.00013 50_[+5]_62 chr2R:19269754-19269874 0.00015 44_[+5]_68 chr2R:7755051-7755171 0.00015 11_[+5]_101 chr2L:8289927-8290047 0.00018 28_[+5]_84 chr3L:20494021-20494141 0.00018 75_[+5]_37 chr2L:14395184-14395304 0.00018 68_[+5]_44 chr2R:23415320-23415440 0.00021 37_[+5]_75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTAAAYAW MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTAAAYAW width=8 seqs=33 chr2L:2861558-2861678 ( 67) GTAAATAA 1 chr3L:12835657-12835777 ( 66) GTAAATAA 1 chr3R:9891694-9891814 ( 81) GTAAATAA 1 chr3R:14284454-14284574 ( 44) GTAAATAA 1 chr3R:6765012-6765132 ( 80) GTAAATAA 1 chr3R:21825282-21825402 ( 41) GTAAATAA 1 chr2L:19998312-19998432 ( 106) GTAAACAA 1 chr2R:6464945-6465065 ( 58) GTAAACAA 1 chr2R:9266577-9266697 ( 38) GTAAACAA 1 chr2R:6811784-6811904 ( 4) GTAAACAA 1 chrX:12889287-12889407 ( 47) GTAAACAA 1 chr3R:31608189-31608309 ( 43) GTAAACAA 1 chr3L:8834614-8834734 ( 73) GTAAACAA 1 chr2L:20935498-20935618 ( 56) GTAAATAT 1 chr2R:21082664-21082784 ( 105) GTAAATAT 1 chr3R:17759956-17760076 ( 70) GTAAATAT 1 chrX:3354506-3354626 ( 73) GTAAATAT 1 chr2L:7166005-7166125 ( 104) GTAAATAT 1 chr3R:12701333-12701453 ( 84) GTAAATAT 1 chr2L:3228857-3228977 ( 11) ATAAATAA 1 chr3L:11003045-11003165 ( 95) ATAAATAA 1 chr2R:14488420-14488540 ( 12) ATAAATAA 1 chr3R:9390274-9390394 ( 66) ATAAATAA 1 chrX:11858997-11859117 ( 108) ATAAATAA 1 chr3R:30102795-30102915 ( 50) ATAAATAA 1 chr2L:16680464-16680584 ( 97) GTAAACAT 1 chr3R:30198962-30199082 ( 51) GTAAACAT 1 chr2R:19269754-19269874 ( 45) ATAAACAA 1 chr2R:7755051-7755171 ( 12) ATAAACAA 1 chr2L:8289927-8290047 ( 29) ATAAATAT 1 chr3L:20494021-20494141 ( 76) ATAAATAT 1 chr2L:14395184-14395304 ( 69) ATAAATAT 1 chr2R:23415320-23415440 ( 38) ATAAACAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTAAAYAW MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0849 E= 8.2e+002 41 -1169 149 -1169 -1169 -1169 -1169 188 186 -1169 -1169 -1169 186 -1169 -1169 -1169 186 -1169 -1169 -1169 -1169 68 -1169 123 186 -1169 -1169 -1169 121 -1169 -1169 42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTAAAYAW MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 8.2e+002 0.363636 0.000000 0.636364 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.363636 0.000000 0.636364 1.000000 0.000000 0.000000 0.000000 0.636364 0.000000 0.000000 0.363636 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTAAAYAW MEME-5 regular expression -------------------------------------------------------------------------------- [GA]TAAA[TC]A[AT] -------------------------------------------------------------------------------- Time 31.22 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16910605-16910725 5.15e-03 59_[+2(3.84e-05)]_53 chr3R:7116668-7116788 9.35e-03 64_[+1(1.22e-05)]_48 chr3R:7117729-7117849 6.21e-03 41_[+1(1.22e-05)]_71 chr4:725224-725344 4.57e-02 86_[+2(3.84e-05)]_26 chr2L:19406565-19406685 9.34e-02 74_[+2(3.84e-05)]_38 chr2R:24074906-24075026 4.74e-04 62_[+2(3.84e-05)]_50 chr3L:2090059-2090179 1.47e-02 68_[+1(1.22e-05)]_44 chr2L:19404896-19405016 1.35e-02 40_[+2(9.74e-05)]_12_[+1(2.23e-05)]_\ 52 chr3R:8316867-8316987 3.28e-02 10_[+1(2.23e-05)]_51_[+1(1.22e-05)]_\ 13_[+1(2.23e-05)]_22 chr3R:20534735-20534855 1.02e-01 55_[+2(3.84e-05)]_57 chr2L:15248272-15248392 1.44e-02 31_[+1(3.46e-05)]_81 chr2R:20672632-20672752 1.04e-01 84_[+2(3.84e-05)]_28 chr2R:15802954-15803074 8.39e-03 120 chr2R:6654654-6654774 1.35e-02 56_[+2(3.84e-05)]_56 chr2R:12302056-12302176 5.36e-01 120 chr3R:30389272-30389392 6.65e-02 97_[+3(1.72e-05)]_15 chr3L:3309003-3309123 7.03e-04 34_[+1(2.23e-05)]_78 chr3R:30387792-30387912 2.05e-01 120 chr2L:7407429-7407549 4.46e-02 120 chr3L:23250407-23250527 2.46e-01 69_[+2(3.84e-05)]_43 chr2R:23611942-23612062 2.67e-02 120 chr3R:30391153-30391273 3.42e-02 72_[+1(1.22e-05)]_40 chr3R:20360162-20360282 4.87e-04 46_[+1(2.23e-05)]_66 chr3L:9423289-9423409 2.36e-03 77_[+2(3.84e-05)]_35 chr3L:15823955-15824075 5.63e-02 66_[+1(3.46e-05)]_46 chr2R:6574691-6574811 3.88e-03 99_[+5(4.74e-05)]_13 chr2R:21640421-21640541 1.73e-02 120 chr2L:15247751-15247871 9.68e-02 120 chrX:19631678-19631798 3.04e-01 120 chr2L:20478699-20478819 3.96e-01 120 chrX:7930541-7930661 1.48e-02 58_[+1(1.22e-05)]_54 chr3R:9784452-9784572 5.38e-02 32_[+2(3.84e-05)]_80 chr2L:19407869-19407989 2.32e-01 39_[+2(3.84e-05)]_73 chr3R:22042147-22042267 4.77e-02 68_[+1(2.23e-05)]_44 chr2L:19918065-19918185 5.05e-01 120 chr2R:24603575-24603695 2.83e-01 120 chr3L:3810081-3810201 2.03e-02 120 chr3R:22755403-22755523 4.65e-02 88_[+2(1.44e-05)]_24 chr3R:21199647-21199767 7.05e-04 42_[+3(5.52e-05)]_70 chr3L:5096761-5096881 5.09e-01 120 chr3R:21825282-21825402 5.76e-02 40_[+5(2.58e-05)]_72 chr3R:25280115-25280235 7.66e-03 120 chrX:18363542-18363662 2.30e-01 120 chr2L:5101474-5101594 1.53e-01 120 chrX:3832380-3832500 2.27e-03 28_[+1(1.22e-05)]_21_[+4(5.48e-05)]_\ 12_[+4(5.48e-05)]_18_[+4(5.48e-05)]_9 chr3R:30386953-30387073 1.63e-02 91_[+2(3.84e-05)]_21 chr2R:7779478-7779598 4.41e-02 101_[+3(1.72e-05)]_11 chr3R:30102795-30102915 3.78e-04 20_[+3(1.72e-05)]_92 chrX:2024984-2025104 7.82e-01 120 chr3R:9783648-9783768 9.88e-01 120 chr3L:2762500-2762620 7.84e-01 120 chr3L:15824728-15824848 7.20e-03 56_[+1(1.22e-05)]_56 chr2L:16530925-16531045 5.69e-04 120 chrX:13332764-13332884 2.40e-03 46_[+1(2.23e-05)]_66 chr3R:29868824-29868944 5.79e-02 120 chrX:11858997-11859117 5.56e-03 57_[+1(1.22e-05)]_55 chr2R:24243212-24243332 1.25e-03 32_[+1(2.23e-05)]_80 chr2L:19402064-19402184 3.56e-02 20_[+1(2.23e-05)]_92 chr2L:8697904-8698024 8.83e-03 105_[+1(1.22e-05)]_7 chr3R:16558859-16558979 2.07e-01 5_[+2(9.74e-05)]_107 chrX:362239-362359 3.22e-02 101_[+4(5.48e-05)]_11 chr3L:16957423-16957543 5.71e-02 120 chr3R:25027270-25027390 7.25e-02 52_[+1(8.90e-05)]_60 chr3L:3417847-3417967 1.52e-01 120 chr3L:14274822-14274942 3.54e-02 120 chr3L:13403597-13403717 9.11e-01 120 chr2L:14395184-14395304 1.13e-02 120 chr3R:30352812-30352932 4.77e-02 73_[+3(1.72e-05)]_39 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chr2L:20016569-20016689 1.03e-01 120 chrX:16836371-16836491 1.68e-05 30_[+3(1.72e-05)]_19_[+1(1.22e-05)]_\ 55 chr2L:3121883-3122003 1.78e-01 120 chr3L:11003045-11003165 3.04e-02 120 chr3L:12223157-12223277 3.25e-01 120 chr2R:21082664-21082784 8.79e-02 104_[+5(7.30e-05)]_8 chr2R:6603133-6603253 6.08e-02 120 chr3L:6217939-6218059 9.77e-01 120 chr3R:10093701-10093821 9.37e-01 120 chr2R:16159117-16159237 2.08e-04 4_[+3(5.52e-05)]_88_[+1(4.93e-05)]_\ 12 chr3L:19907433-19907553 1.33e-03 49_[+3(1.72e-05)]_63 chr2L:7133940-7134060 6.30e-02 120 chr3L:3134193-3134313 7.69e-01 120 chr2R:6023217-6023337 5.63e-01 120 chr2L:1654430-1654550 1.33e-01 120 chr3R:31945772-31945892 2.19e-02 71_[+4(1.81e-05)]_41 chr2L:19998312-19998432 5.38e-02 58_[+5(7.30e-05)]_39_[+5(4.74e-05)]_\ 7 chr2R:14487733-14487853 2.17e-03 120 chr3L:960737-960857 3.17e-03 52_[+2(9.74e-05)]_60 chrX:11817860-11817980 1.23e-03 30_[+3(1.72e-05)]_59_[+3(1.72e-05)]_\ 15 chr3R:17078174-17078294 3.84e-04 37_[+2(1.44e-05)]_75 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9.08e-01 120 chr2L:425624-425744 1.44e-02 120 chr2R:9861916-9862036 9.99e-01 120 chrX:8409245-8409365 3.87e-01 120 chr3L:15530855-15530975 7.26e-01 120 chr2L:18572223-18572343 7.89e-01 120 chr2R:22200013-22200133 5.00e-02 120 chr3L:11355798-11355918 1.97e-01 120 chr2L:12076099-12076219 7.50e-02 120 chr3R:23181118-23181238 9.55e-05 38_[+5(4.74e-05)]_74 chr3R:7107868-7107988 3.50e-04 12_[+4(3.30e-05)]_2_[+4(3.30e-05)]_\ 57_[+3(1.72e-05)]_25 chr3R:19096946-19097066 1.04e-01 9_[+1(7.42e-05)]_103 chr2L:22036956-22037076 2.31e-02 120 chr2R:11582059-11582179 3.54e-01 74_[+3(9.67e-05)]_38 chr3L:14354790-14354910 5.07e-02 120 chr3L:8347521-8347641 1.84e-02 40_[+1(4.93e-05)]_72 chr3R:30198962-30199082 1.75e-04 14_[+4(7.28e-05)]_98 chr3R:23297231-23297351 4.79e-01 120 chr2L:19363756-19363876 6.69e-03 102_[+4(3.30e-05)]_10 chr2L:2906253-2906373 5.28e-03 53_[+4(3.30e-05)]_59 chr2L:16680464-16680584 2.00e-01 120 chrX:1026606-1026726 1.26e-01 120 chr3R:6665452-6665572 2.31e-01 120 chr3L:8525895-8526015 1.21e-04 40_[+1(1.22e-05)]_72 chr3L:17937447-17937567 1.28e-01 120 chr2R:15675851-15675971 1.01e-03 9_[+1(7.42e-05)]_103 chr3R:21263294-21263414 3.50e-02 97_[+1(4.93e-05)]_15 chr3R:4975296-4975416 3.45e-02 120 chr2L:6252360-6252480 4.24e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************