******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/MESR4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:14242625-14242745 1.0000 120 chr2R:1264626-1264746 1.0000 120 chr2R:22415324-22415444 1.0000 120 chr2R:18973080-18973200 1.0000 120 chr3R:4641324-4641444 1.0000 120 chr2R:24561664-24561784 1.0000 120 chr4:193516-193636 1.0000 120 chr2R:1072173-1072293 1.0000 120 chrX:6037942-6038062 1.0000 120 chrX:2610176-2610296 1.0000 120 chr3R:27582904-27583024 1.0000 120 chrX:21387744-21387864 1.0000 120 chr2L:1158752-1158872 1.0000 120 chrX:6673757-6673877 1.0000 120 chr2L:10431441-10431561 1.0000 120 chr3L:22071694-22071814 1.0000 120 chr3L:21832052-21832172 1.0000 120 chrX:6224861-6224981 1.0000 120 chr3R:22462585-22462705 1.0000 120 chr2L:21758141-21758261 1.0000 120 chr3L:12750634-12750754 1.0000 120 chrX:16942692-16942812 1.0000 120 chr2L:5327358-5327478 1.0000 120 chrX:1873340-1873460 1.0000 120 chr3L:6955341-6955461 1.0000 120 chr3L:12145846-12145966 1.0000 120 chr2L:22982046-22982166 1.0000 120 chr3R:7186399-7186519 1.0000 120 chr3R:12425664-12425784 1.0000 120 chr3R:4485098-4485218 1.0000 120 chrX:19664626-19664746 1.0000 120 chrX:17703459-17703579 1.0000 120 chr3R:29834883-29835003 1.0000 120 chr2R:11970803-11970923 1.0000 120 chr2R:24775057-24775177 1.0000 120 chrX:14837982-14838102 1.0000 120 chrX:7324292-7324412 1.0000 120 chr2R:19503112-19503232 1.0000 120 chr3L:2587693-2587813 1.0000 120 chr2L:4452889-4453009 1.0000 120 chr2R:22605438-22605558 1.0000 120 chr2L:106550-106670 1.0000 120 chr2R:24137827-24137947 1.0000 120 chr2R:17563719-17563839 1.0000 120 chr2L:10314973-10315093 1.0000 120 chrX:14226357-14226477 1.0000 120 chrX:625013-625133 1.0000 120 chr3L:22287973-22288093 1.0000 120 chrX:19491747-19491867 1.0000 120 chr2L:21162920-21163040 1.0000 120 chr2R:9579572-9579692 1.0000 120 chrX:22444851-22444971 1.0000 120 chr3L:13965304-13965424 1.0000 120 chr2R:22608582-22608702 1.0000 120 chr2R:5307440-5307560 1.0000 120 chr2L:15007895-15008015 1.0000 120 chr3R:4232128-4232248 1.0000 120 chr2R:5980542-5980662 1.0000 120 chr2R:16109792-16109912 1.0000 120 chr4:358237-358357 1.0000 120 chrX:13212401-13212521 1.0000 120 chr2R:11452200-11452320 1.0000 120 chr2L:5279143-5279263 1.0000 120 chr3L:1617888-1618008 1.0000 120 chr3R:25122725-25122845 1.0000 120 chr2L:13164809-13164929 1.0000 120 chrX:17657448-17657568 1.0000 120 chrX:6267866-6267986 1.0000 120 chr3L:18899367-18899487 1.0000 120 chrX:14831849-14831969 1.0000 120 chr2R:8614907-8615027 1.0000 120 chr2L:8123857-8123977 1.0000 120 chrX:20393582-20393702 1.0000 120 chrX:927392-927512 1.0000 120 chr3R:21359554-21359674 1.0000 120 chr3L:211279-211399 1.0000 120 chr2R:15682750-15682870 1.0000 120 chrX:6350179-6350299 1.0000 120 chr2R:15218425-15218545 1.0000 120 chr2R:17573546-17573666 1.0000 120 chr3R:3790023-3790143 1.0000 120 chr2L:15752299-15752419 1.0000 120 chr3L:1864899-1865019 1.0000 120 chr3L:1777381-1777501 1.0000 120 chr3R:8984113-8984233 1.0000 120 chr2L:22129698-22129818 1.0000 120 chrX:18090325-18090445 1.0000 120 chr3R:17540544-17540664 1.0000 120 chr3L:20787974-20788094 1.0000 120 chrX:7728891-7729011 1.0000 120 chr2R:11360780-11360900 1.0000 120 chr3R:6456280-6456400 1.0000 120 chr2R:10897621-10897741 1.0000 120 chr2L:4847850-4847970 1.0000 120 chr3L:2632535-2632655 1.0000 120 chr3L:21635427-21635547 1.0000 120 chr3R:30166283-30166403 1.0000 120 chr3R:22022812-22022932 1.0000 120 chr2R:7516165-7516285 1.0000 120 chr4:1123027-1123147 1.0000 120 chr3R:5649258-5649378 1.0000 120 chr3R:5467833-5467953 1.0000 120 chrX:19642643-19642763 1.0000 120 chr3R:25038846-25038966 1.0000 120 chr3L:25115616-25115736 1.0000 120 chr4:129190-129310 1.0000 120 chr4:663758-663878 1.0000 120 chr3R:5660740-5660860 1.0000 120 chr3L:3159366-3159486 1.0000 120 chr3L:11823108-11823228 1.0000 120 chr2L:16732640-16732760 1.0000 120 chrX:17656653-17656773 1.0000 120 chrX:11125252-11125372 1.0000 120 chr2R:12879509-12879629 1.0000 120 chr2R:21143798-21143918 1.0000 120 chr2L:6000297-6000417 1.0000 120 chrX:11128929-11129049 1.0000 120 chr2L:16731941-16732061 1.0000 120 chrX:19865378-19865498 1.0000 120 chr3L:20778837-20778957 1.0000 120 chr2L:869661-869781 1.0000 120 chr2R:21719783-21719903 1.0000 120 chr2R:7445619-7445739 1.0000 120 chr2R:15311631-15311751 1.0000 120 chr2R:6657426-6657546 1.0000 120 chrX:647359-647479 1.0000 120 chrX:1465842-1465962 1.0000 120 chr2L:1129618-1129738 1.0000 120 chr2L:8043532-8043652 1.0000 120 chr3L:6756328-6756448 1.0000 120 chrX:19495676-19495796 1.0000 120 chr3R:24817568-24817688 1.0000 120 chr3R:21133689-21133809 1.0000 120 chr3R:20021853-20021973 1.0000 120 chr2L:4226849-4226969 1.0000 120 chr3R:26717953-26718073 1.0000 120 chrX:15746024-15746144 1.0000 120 chr3L:12118310-12118430 1.0000 120 chr3R:24229841-24229961 1.0000 120 chr3R:25123698-25123818 1.0000 120 chr2L:12172314-12172434 1.0000 120 chr2L:15038700-15038820 1.0000 120 chr3R:4310710-4310830 1.0000 120 chr3L:21027208-21027328 1.0000 120 chr3L:18905483-18905603 1.0000 120 chrX:9272798-9272918 1.0000 120 chr2R:15321957-15322077 1.0000 120 chr3R:17085604-17085724 1.0000 120 chr3L:327596-327716 1.0000 120 chr3L:15159178-15159298 1.0000 120 chr3R:12691863-12691983 1.0000 120 chr3R:15836876-15836996 1.0000 120 chr3R:16647812-16647932 1.0000 120 chr3R:23118503-23118623 1.0000 120 chr2R:9964836-9964956 1.0000 120 chrX:10082322-10082442 1.0000 120 chr2L:294477-294597 1.0000 120 chrX:11573836-11573956 1.0000 120 chrX:15703551-15703671 1.0000 120 chrX:5422308-5422428 1.0000 120 chr2R:8631628-8631748 1.0000 120 chrX:13296469-13296589 1.0000 120 chr3R:18199383-18199503 1.0000 120 chr2R:4470823-4470943 1.0000 120 chrX:2704685-2704805 1.0000 120 chr3L:17529616-17529736 1.0000 120 chrX:22455161-22455281 1.0000 120 chr3L:1351214-1351334 1.0000 120 chr4:610959-611079 1.0000 120 chrX:23096449-23096569 1.0000 120 chr2L:10976188-10976308 1.0000 120 chr3L:17241953-17242073 1.0000 120 chr2R:22885812-22885932 1.0000 120 chr3L:19913487-19913607 1.0000 120 chr3R:17795190-17795310 1.0000 120 chr3L:20028821-20028941 1.0000 120 chr3L:10661545-10661665 1.0000 120 chr2L:6481092-6481212 1.0000 120 chr3L:11074170-11074290 1.0000 120 chrX:8176773-8176893 1.0000 120 chr2L:10226493-10226613 1.0000 120 chr3R:28599086-28599206 1.0000 120 chr3L:15576687-15576807 1.0000 120 chr3L:6495079-6495199 1.0000 120 chr2R:17419433-17419553 1.0000 120 chr2R:23970520-23970640 1.0000 120 chr2R:11359919-11360039 1.0000 120 chr2R:4788431-4788551 1.0000 120 chr2R:22186041-22186161 1.0000 120 chrX:8152077-8152197 1.0000 120 chr2R:12179653-12179773 1.0000 120 chr3L:17513645-17513765 1.0000 120 chrX:15992526-15992646 1.0000 120 chr3R:9762944-9763064 1.0000 120 chr2L:9758660-9758780 1.0000 120 chrX:17579015-17579135 1.0000 120 chrX:7933103-7933223 1.0000 120 chr3L:16113259-16113379 1.0000 120 chr2R:8906789-8906909 1.0000 120 chr2R:4744660-4744780 1.0000 120 chrX:15909463-15909583 1.0000 120 chrX:12018721-12018841 1.0000 120 chr2R:18411320-18411440 1.0000 120 chr3L:7369964-7370084 1.0000 120 chr3R:4645385-4645505 1.0000 120 chr2L:11282139-11282259 1.0000 120 chr3R:24038285-24038405 1.0000 120 chr3R:4399805-4399925 1.0000 120 chrX:15860167-15860287 1.0000 120 chr3R:27681860-27681980 1.0000 120 chrX:21605067-21605187 1.0000 120 chr3L:5603773-5603893 1.0000 120 chr2R:5760900-5761020 1.0000 120 chrX:8592252-8592372 1.0000 120 chr3L:5561387-5561507 1.0000 120 chr2L:22982245-22982365 1.0000 120 chr3R:27922138-27922258 1.0000 120 chrX:15991757-15991877 1.0000 120 chrX:5764647-5764767 1.0000 120 chr3R:5659665-5659785 1.0000 120 chr2R:17019300-17019420 1.0000 120 chr2R:13198936-13199056 1.0000 120 chr2L:3163657-3163777 1.0000 120 chr2L:5071234-5071354 1.0000 120 chr3L:23715162-23715282 1.0000 120 chr2L:15271805-15271925 1.0000 120 chrX:10213058-10213178 1.0000 120 chrX:1865850-1865970 1.0000 120 chr3R:29131272-29131392 1.0000 120 chr3L:11062550-11062670 1.0000 120 chr2L:3452506-3452626 1.0000 120 chr3R:13683058-13683178 1.0000 120 chr3R:21660232-21660352 1.0000 120 chr3R:25065426-25065546 1.0000 120 chrX:18137382-18137502 1.0000 120 chr3L:11609260-11609380 1.0000 120 chr2R:9131727-9131847 1.0000 120 chr3L:6173638-6173758 1.0000 120 chr2R:7962547-7962667 1.0000 120 chr2L:10977109-10977229 1.0000 120 chr2L:2874285-2874405 1.0000 120 chr3L:199521-199641 1.0000 120 chr2R:14164431-14164551 1.0000 120 chr3R:27947807-27947927 1.0000 120 chr3L:12471867-12471987 1.0000 120 chr2R:16001792-16001912 1.0000 120 chr4:1060537-1060657 1.0000 120 chr2L:10206762-10206882 1.0000 120 chr2R:21616720-21616840 1.0000 120 chr3L:16348140-16348260 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_MESR4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/MESR4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.249 C 0.243 G 0.247 T 0.261 Background letter frequencies (from file dataset with add-one prior applied): A 0.249 C 0.243 G 0.247 T 0.261 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGCTGCTG MEME-1 width = 8 sites = 27 llr = 245 E-value = 1.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCTGCTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::1:::: pos.-specific C 11a11a:: probability G :9::9:1a matrix T 9::8::9: bits 2.0 * * * 1.8 * * * 1.6 * * * 1.4 *** **** Relative 1.2 *** **** Entropy 1.0 ******** (13.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCTGCTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGCTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:10206762-10206882 67 1.58e-05 AAGTGCATCC TGCTGCTG TGCATTGGCA chr3R:27947807-27947927 32 1.58e-05 GCGGCTAAGC TGCTGCTG CTGGAGTGGC chr2L:10977109-10977229 78 1.58e-05 ACTTGGGTGC TGCTGCTG CTGCGGTTCA chr3L:17513645-17513765 23 1.58e-05 ATGTTGTTGT TGCTGCTG CCCCAGACGC chr2R:11359919-11360039 36 1.58e-05 GGCctgctgc tgctgctg cagtggctgt chr2R:17419433-17419553 42 1.58e-05 CCATCGCTGC TGCTGCTG ATGATCCGCG chr3L:17529616-17529736 36 1.58e-05 CTCTTCTTCC TGCTGCTG CACCGCCGTT chr3R:12425664-12425784 59 1.58e-05 GGTGCACTAG TGCTGCTG TTGGGTGTCG chr3R:7186399-7186519 65 1.58e-05 cagcagcagc tgctgcTG GCTGGGCCGA chrX:14242625-14242745 15 1.58e-05 ctgctgctgc tgctgctg ctgctactgc chr3R:4399805-4399925 52 3.06e-05 GACACCGCAC TGCCGCTG GCTATTGGAC chr3R:25123698-25123818 26 3.06e-05 AGCCACAGAT TGCCGCTG TAGTCGCGGC chrX:1465842-1465962 5 3.06e-05 CAGG TGCCGCTG CTTCCCCGGG chr3L:5603773-5603893 13 6.03e-05 GTTTGCGTGG CGCTGCTG CCCATTGTGT chr3R:28599086-28599206 63 6.03e-05 GGCACCTCTC TGCTGCGG ATCTCCTTGA chr2R:9964836-9964956 35 6.03e-05 GTCTTGAGGA TGCTGCGG CGTTTGTAAA chr2L:4226849-4226969 7 6.03e-05 ACCCTC TGCTGCGG GCTGATCTTC chr3L:20787974-20788094 17 6.03e-05 GTGCTACTGG CGCTGCTG GAACTCCCTT chr2R:11452200-11452320 39 6.03e-05 AAACGTGTCC CGCTGCTG AAGAACGATT chr3L:5561387-5561507 65 9.14e-05 GGTGGGCAGG TGCTCCTG GGAATCCTCG chr3R:23118503-23118623 99 9.14e-05 TCACCATATC TCCTGCTG CCCGCAATTA chrX:19642643-19642763 35 9.14e-05 GGCGGGTGAC TGCTCCTG GTTCGAGGAC chrX:7728891-7729011 31 9.14e-05 ACAAAGGAGA TCCTGCTG CACACAGTCG chr2R:9579572-9579692 52 9.14e-05 CGGCAGAATG TGCTCCTG CGAGCTGGTG chr2R:24775057-24775177 47 9.14e-05 GTCGGCGGAG TCCTGCTG CCTAGCACCT chr3R:30166283-30166403 27 1.06e-04 ATGGATGCAC TGCAGCTG CCGATTATCA chr2L:106550-106670 60 1.06e-04 ACAGTAAGAG TGCAGCTG CACTATAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGCTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10206762-10206882 1.6e-05 66_[+1]_46 chr3R:27947807-27947927 1.6e-05 31_[+1]_81 chr2L:10977109-10977229 1.6e-05 77_[+1]_35 chr3L:17513645-17513765 1.6e-05 22_[+1]_90 chr2R:11359919-11360039 1.6e-05 35_[+1]_77 chr2R:17419433-17419553 1.6e-05 41_[+1]_71 chr3L:17529616-17529736 1.6e-05 35_[+1]_77 chr3R:12425664-12425784 1.6e-05 58_[+1]_54 chr3R:7186399-7186519 1.6e-05 64_[+1]_48 chrX:14242625-14242745 1.6e-05 14_[+1]_98 chr3R:4399805-4399925 3.1e-05 51_[+1]_61 chr3R:25123698-25123818 3.1e-05 25_[+1]_87 chrX:1465842-1465962 3.1e-05 4_[+1]_108 chr3L:5603773-5603893 6e-05 12_[+1]_100 chr3R:28599086-28599206 6e-05 62_[+1]_50 chr2R:9964836-9964956 6e-05 34_[+1]_78 chr2L:4226849-4226969 6e-05 6_[+1]_106 chr3L:20787974-20788094 6e-05 16_[+1]_96 chr2R:11452200-11452320 6e-05 38_[+1]_74 chr3L:5561387-5561507 9.1e-05 64_[+1]_48 chr3R:23118503-23118623 9.1e-05 98_[+1]_14 chrX:19642643-19642763 9.1e-05 34_[+1]_78 chrX:7728891-7729011 9.1e-05 30_[+1]_82 chr2R:9579572-9579692 9.1e-05 51_[+1]_61 chr2R:24775057-24775177 9.1e-05 46_[+1]_66 chr3R:30166283-30166403 0.00011 26_[+1]_86 chr2L:106550-106670 0.00011 59_[+1]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGCTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCTGCTG width=8 seqs=27 chr2L:10206762-10206882 ( 67) TGCTGCTG 1 chr3R:27947807-27947927 ( 32) TGCTGCTG 1 chr2L:10977109-10977229 ( 78) TGCTGCTG 1 chr3L:17513645-17513765 ( 23) TGCTGCTG 1 chr2R:11359919-11360039 ( 36) TGCTGCTG 1 chr2R:17419433-17419553 ( 42) TGCTGCTG 1 chr3L:17529616-17529736 ( 36) TGCTGCTG 1 chr3R:12425664-12425784 ( 59) TGCTGCTG 1 chr3R:7186399-7186519 ( 65) TGCTGCTG 1 chrX:14242625-14242745 ( 15) TGCTGCTG 1 chr3R:4399805-4399925 ( 52) TGCCGCTG 1 chr3R:25123698-25123818 ( 26) TGCCGCTG 1 chrX:1465842-1465962 ( 5) TGCCGCTG 1 chr3L:5603773-5603893 ( 13) CGCTGCTG 1 chr3R:28599086-28599206 ( 63) TGCTGCGG 1 chr2R:9964836-9964956 ( 35) TGCTGCGG 1 chr2L:4226849-4226969 ( 7) TGCTGCGG 1 chr3L:20787974-20788094 ( 17) CGCTGCTG 1 chr2R:11452200-11452320 ( 39) CGCTGCTG 1 chr3L:5561387-5561507 ( 65) TGCTCCTG 1 chr3R:23118503-23118623 ( 99) TCCTGCTG 1 chrX:19642643-19642763 ( 35) TGCTCCTG 1 chrX:7728891-7729011 ( 31) TCCTGCTG 1 chr2R:9579572-9579692 ( 52) TGCTCCTG 1 chr2R:24775057-24775177 ( 47) TCCTGCTG 1 chr3R:30166283-30166403 ( 27) TGCAGCTG 1 chr2L:106550-106670 ( 60) TGCAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGCTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9783 E= 1.3e+000 -1140 -113 -1140 177 -1140 -113 185 -1140 -1140 204 -1140 -1140 -175 -113 -1140 164 -1140 -113 185 -1140 -1140 204 -1140 -1140 -1140 -1140 -115 177 -1140 -1140 202 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGCTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.3e+000 0.000000 0.111111 0.000000 0.888889 0.000000 0.111111 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.074074 0.111111 0.000000 0.814815 0.000000 0.111111 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGCTG MEME-1 regular expression -------------------------------------------------------------------------------- TGCTGCTG -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCACGCC MEME-2 width = 8 sites = 5 llr = 56 E-value = 2.0e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCACGCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C :aa:a:aa probability G a::::a:: matrix T :::::::: bits 2.0 ******** 1.8 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCACGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCACGCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15991757-15991877 6 1.29e-05 TGAAA GCCACGCC ATTTAAACTT chr3R:4310710-4310830 56 1.29e-05 AAAAATCACT GCCACGCC TCTGCGTCGT chr3R:17540544-17540664 87 1.29e-05 AAGCATGAGC GCCACGCC GCCGGACCTA chrX:927392-927512 21 1.29e-05 TTCCGTGGAT GCCACGCC AACGCCTCCG chr2R:1264626-1264746 105 1.29e-05 ACAAGTACAT GCCACGCC TTGCTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCACGCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15991757-15991877 1.3e-05 5_[+2]_107 chr3R:4310710-4310830 1.3e-05 55_[+2]_57 chr3R:17540544-17540664 1.3e-05 86_[+2]_26 chrX:927392-927512 1.3e-05 20_[+2]_92 chr2R:1264626-1264746 1.3e-05 104_[+2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCACGCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCACGCC width=8 seqs=5 chrX:15991757-15991877 ( 6) GCCACGCC 1 chr3R:4310710-4310830 ( 56) GCCACGCC 1 chr3R:17540544-17540664 ( 87) GCCACGCC 1 chrX:927392-927512 ( 21) GCCACGCC 1 chr2R:1264626-1264746 ( 105) GCCACGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCACGCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 2.0e+005 -897 -897 201 -897 -897 204 -897 -897 -897 204 -897 -897 200 -897 -897 -897 -897 204 -897 -897 -897 -897 201 -897 -897 204 -897 -897 -897 204 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCACGCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.0e+005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCACGCC MEME-2 regular expression -------------------------------------------------------------------------------- GCCACGCC -------------------------------------------------------------------------------- Time 13.68 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCGCCGC MEME-3 width = 8 sites = 2 llr = 22 E-value = 3.5e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCGCCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :aa:aa:a probability G :::a::a: matrix T a::::::: bits 2.0 ******* 1.8 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCCGCCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCGCCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:16731941-16732061 40 1.35e-05 GTGGGTGGTG TCCGCCGC CAGCATCACG chr2L:6000297-6000417 37 1.35e-05 GTGCGCAAGT TCCGCCGC GAGACCAGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCGCCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:16731941-16732061 1.3e-05 39_[+3]_73 chr2L:6000297-6000417 1.3e-05 36_[+3]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCGCCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCGCCGC width=8 seqs=2 chr2L:16731941-16732061 ( 40) TCCGCCGC 1 chr2L:6000297-6000417 ( 37) TCCGCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCGCCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 3.5e+005 -765 -765 -765 193 -765 204 -765 -765 -765 204 -765 -765 -765 -765 201 -765 -765 204 -765 -765 -765 204 -765 -765 -765 -765 201 -765 -765 204 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCGCCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.5e+005 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCGCCGC MEME-3 regular expression -------------------------------------------------------------------------------- TCCGCCGC -------------------------------------------------------------------------------- Time 19.94 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACACAC MEME-4 width = 8 sites = 2 llr = 22 E-value = 7.6e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A a:a:a:a: pos.-specific C :a:a:a:a probability G :::::::: matrix T :::::::: bits 2.0 ******** 1.8 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACACACAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:199521-199641 78 1.34e-05 GCCGCCGCAG ACACACAC GCCAAGCACT chr3R:5659665-5659785 32 1.34e-05 TGCGACACAG ACACACAC TTTTCTCTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:199521-199641 1.3e-05 77_[+4]_35 chr3R:5659665-5659785 1.3e-05 31_[+4]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACACAC width=8 seqs=2 chr3L:199521-199641 ( 78) ACACACAC 1 chr3R:5659665-5659785 ( 32) ACACACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 7.6e+005 200 -765 -765 -765 -765 204 -765 -765 200 -765 -765 -765 -765 204 -765 -765 200 -765 -765 -765 -765 204 -765 -765 200 -765 -765 -765 -765 204 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 7.6e+005 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 regular expression -------------------------------------------------------------------------------- ACACACAC -------------------------------------------------------------------------------- Time 26.16 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCAGCT MEME-5 width = 8 sites = 2 llr = 22 E-value = 1.2e+006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCAGCT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a::a::: pos.-specific C a::a::a: probability G ::a::a:: matrix T :::::::a bits 2.0 ******* 1.8 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCAGCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGCT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12879509-12879629 32 1.42e-05 AATACATACA CAGCAGCT CGGTGTAGGA chr3L:2632535-2632655 76 1.42e-05 CACACACCCG CAGCAGCT AGCCGACGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGCT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12879509-12879629 1.4e-05 31_[+5]_81 chr3L:2632535-2632655 1.4e-05 75_[+5]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGCT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCAGCT width=8 seqs=2 chr2R:12879509-12879629 ( 32) CAGCAGCT 1 chr3L:2632535-2632655 ( 76) CAGCAGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGCT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 1.2e+006 -765 204 -765 -765 200 -765 -765 -765 -765 -765 201 -765 -765 204 -765 -765 200 -765 -765 -765 -765 -765 201 -765 -765 204 -765 -765 -765 -765 -765 193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGCT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.2e+006 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGCT MEME-5 regular expression -------------------------------------------------------------------------------- CAGCAGCT -------------------------------------------------------------------------------- Time 32.36 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14242625-14242745 6.58e-02 2_[+1(1.58e-05)]_1_[+1(1.58e-05)]_\ 101 chr2R:1264626-1264746 5.48e-02 104_[+2(1.29e-05)]_8 chr2R:22415324-22415444 9.44e-01 120 chr2R:18973080-18973200 8.38e-01 120 chr3R:4641324-4641444 8.01e-01 120 chr2R:24561664-24561784 8.29e-01 120 chr4:193516-193636 9.94e-01 120 chr2R:1072173-1072293 8.95e-01 120 chrX:6037942-6038062 1.00e+00 120 chrX:2610176-2610296 9.18e-01 120 chr3R:27582904-27583024 2.54e-01 120 chrX:21387744-21387864 6.46e-01 120 chr2L:1158752-1158872 7.83e-01 120 chrX:6673757-6673877 8.65e-01 120 chr2L:10431441-10431561 1.52e-01 120 chr3L:22071694-22071814 7.69e-01 120 chr3L:21832052-21832172 7.53e-01 120 chrX:6224861-6224981 7.57e-03 43_[+4(1.34e-05)]_69 chr3R:22462585-22462705 7.02e-01 120 chr2L:21758141-21758261 9.62e-01 120 chr3L:12750634-12750754 3.57e-01 120 chrX:16942692-16942812 9.77e-01 120 chr2L:5327358-5327478 6.46e-01 120 chrX:1873340-1873460 4.76e-01 120 chr3L:6955341-6955461 7.46e-01 120 chr3L:12145846-12145966 9.60e-01 120 chr2L:22982046-22982166 9.84e-01 120 chr3R:7186399-7186519 1.57e-03 54_[+5(5.43e-05)]_2_[+1(1.58e-05)]_\ 48 chr3R:12425664-12425784 1.97e-01 58_[+1(1.58e-05)]_54 chr3R:4485098-4485218 8.46e-01 120 chrX:19664626-19664746 9.17e-01 120 chrX:17703459-17703579 6.25e-01 120 chr3R:29834883-29835003 9.50e-01 120 chr2R:11970803-11970923 1.38e-01 120 chr2R:24775057-24775177 1.99e-01 46_[+1(9.14e-05)]_66 chrX:14837982-14838102 9.18e-03 25_[+3(1.35e-05)]_87 chrX:7324292-7324412 9.98e-01 120 chr2R:19503112-19503232 1.54e-01 120 chr3L:2587693-2587813 2.85e-01 1_[+3(5.17e-05)]_111 chr2L:4452889-4453009 5.01e-01 120 chr2R:22605438-22605558 1.20e-01 47_[+5(1.42e-05)]_65 chr2L:106550-106670 1.07e-01 120 chr2R:24137827-24137947 3.67e-01 120 chr2R:17563719-17563839 1.03e-01 83_[+5(5.43e-05)]_29 chr2L:10314973-10315093 9.39e-01 120 chrX:14226357-14226477 2.89e-01 120 chrX:625013-625133 7.59e-01 120 chr3L:22287973-22288093 9.86e-01 120 chrX:19491747-19491867 1.85e-01 120 chr2L:21162920-21163040 5.29e-01 120 chr2R:9579572-9579692 1.20e-01 51_[+1(9.14e-05)]_61 chrX:22444851-22444971 1.95e-02 16_[+5(1.42e-05)]_96 chr3L:13965304-13965424 8.29e-01 120 chr2R:22608582-22608702 7.65e-01 120 chr2R:5307440-5307560 5.15e-01 120 chr2L:15007895-15008015 2.24e-01 120 chr3R:4232128-4232248 1.99e-01 120 chr2R:5980542-5980662 8.96e-01 120 chr2R:16109792-16109912 7.25e-01 120 chr4:358237-358357 7.44e-01 120 chrX:13212401-13212521 4.39e-01 120 chr2R:11452200-11452320 5.03e-02 38_[+1(6.03e-05)]_74 chr2L:5279143-5279263 9.80e-01 120 chr3L:1617888-1618008 3.78e-01 120 chr3R:25122725-25122845 1.00e+00 120 chr2L:13164809-13164929 8.54e-01 120 chrX:17657448-17657568 6.72e-01 120 chrX:6267866-6267986 9.09e-01 120 chr3L:18899367-18899487 4.51e-02 97_[+3(1.35e-05)]_15 chrX:14831849-14831969 3.37e-01 120 chr2R:8614907-8615027 9.98e-01 120 chr2L:8123857-8123977 7.70e-01 120 chrX:20393582-20393702 4.41e-01 120 chrX:927392-927512 1.44e-03 20_[+2(1.29e-05)]_92 chr3R:21359554-21359674 8.92e-02 120 chr3L:211279-211399 7.23e-01 120 chr2R:15682750-15682870 1.57e-01 120 chrX:6350179-6350299 3.09e-01 120 chr2R:15218425-15218545 9.99e-01 120 chr2R:17573546-17573666 3.32e-01 120 chr3R:3790023-3790143 1.00e+00 120 chr2L:15752299-15752419 3.70e-01 120 chr3L:1864899-1865019 8.89e-01 120 chr3L:1777381-1777501 5.05e-01 120 chr3R:8984113-8984233 6.43e-01 120 chr2L:22129698-22129818 5.85e-01 120 chrX:18090325-18090445 5.52e-01 120 chr3R:17540544-17540664 1.44e-02 86_[+2(1.29e-05)]_26 chr3L:20787974-20788094 3.71e-01 16_[+1(6.03e-05)]_96 chrX:7728891-7729011 1.74e-01 30_[+1(9.14e-05)]_82 chr2R:11360780-11360900 4.36e-01 120 chr3R:6456280-6456400 9.78e-01 120 chr2R:10897621-10897741 4.54e-01 120 chr2L:4847850-4847970 5.72e-01 120 chr3L:2632535-2632655 1.01e-04 62_[+4(1.34e-05)]_5_[+5(1.42e-05)]_\ 37 chr3L:21635427-21635547 5.33e-01 120 chr3R:30166283-30166403 3.33e-02 120 chr3R:22022812-22022932 9.80e-01 120 chr2R:7516165-7516285 4.95e-01 120 chr4:1123027-1123147 1.00e+00 120 chr3R:5649258-5649378 9.92e-01 120 chr3R:5467833-5467953 7.56e-01 120 chrX:19642643-19642763 2.46e-02 34_[+1(9.14e-05)]_78 chr3R:25038846-25038966 4.36e-01 120 chr3L:25115616-25115736 9.90e-01 120 chr4:129190-129310 9.32e-01 120 chr4:663758-663878 1.00e+00 120 chr3R:5660740-5660860 1.93e-01 120 chr3L:3159366-3159486 9.97e-01 120 chr3L:11823108-11823228 1.00e+00 120 chr2L:16732640-16732760 6.27e-01 120 chrX:17656653-17656773 5.84e-01 120 chrX:11125252-11125372 8.79e-01 120 chr2R:12879509-12879629 2.62e-02 31_[+5(1.42e-05)]_81 chr2R:21143798-21143918 6.09e-02 120 chr2L:6000297-6000417 2.98e-03 36_[+3(1.35e-05)]_76 chrX:11128929-11129049 3.10e-01 120 chr2L:16731941-16732061 6.53e-02 39_[+3(1.35e-05)]_73 chrX:19865378-19865498 6.56e-02 120 chr3L:20778837-20778957 5.06e-01 120 chr2L:869661-869781 5.62e-02 120 chr2R:21719783-21719903 9.95e-01 120 chr2R:7445619-7445739 1.27e-01 120 chr2R:15311631-15311751 1.00e+00 120 chr2R:6657426-6657546 1.79e-01 120 chrX:647359-647479 1.00e+00 120 chrX:1465842-1465962 7.10e-03 4_[+1(3.06e-05)]_108 chr2L:1129618-1129738 1.63e-02 33_[+5(1.42e-05)]_55_[+5(1.42e-05)]_\ 16 chr2L:8043532-8043652 9.09e-02 19_[+5(5.43e-05)]_51_[+5(5.43e-05)]_\ 34 chr3L:6756328-6756448 7.01e-01 120 chrX:19495676-19495796 9.50e-01 120 chr3R:24817568-24817688 9.98e-01 120 chr3R:21133689-21133809 5.15e-01 120 chr3R:20021853-20021973 3.64e-01 120 chr2L:4226849-4226969 1.37e-01 6_[+1(6.03e-05)]_106 chr3R:26717953-26718073 9.89e-01 120 chrX:15746024-15746144 9.11e-02 120 chr3L:12118310-12118430 2.41e-01 120 chr3R:24229841-24229961 4.16e-01 120 chr3R:25123698-25123818 8.01e-02 25_[+1(3.06e-05)]_87 chr2L:12172314-12172434 5.03e-01 120 chr2L:15038700-15038820 8.34e-01 120 chr3R:4310710-4310830 5.58e-02 55_[+2(1.29e-05)]_57 chr3L:21027208-21027328 1.00e+00 120 chr3L:18905483-18905603 9.41e-01 120 chrX:9272798-9272918 4.57e-01 120 chr2R:15321957-15322077 8.40e-01 120 chr3R:17085604-17085724 4.79e-01 120 chr3L:327596-327716 9.41e-01 120 chr3L:15159178-15159298 9.96e-01 120 chr3R:12691863-12691983 9.81e-01 120 chr3R:15836876-15836996 6.44e-01 120 chr3R:16647812-16647932 2.09e-01 95_[+5(5.43e-05)]_17 chr3R:23118503-23118623 3.98e-01 98_[+1(9.14e-05)]_14 chr2R:9964836-9964956 3.25e-01 34_[+1(6.03e-05)]_78 chrX:10082322-10082442 7.40e-01 120 chr2L:294477-294597 4.97e-01 120 chrX:11573836-11573956 9.17e-01 120 chrX:15703551-15703671 5.85e-01 120 chrX:5422308-5422428 9.86e-01 120 chr2R:8631628-8631748 9.73e-01 120 chrX:13296469-13296589 8.20e-01 120 chr3R:18199383-18199503 9.96e-01 120 chr2R:4470823-4470943 7.87e-01 120 chrX:2704685-2704805 3.15e-02 120 chr3L:17529616-17529736 1.06e-02 35_[+1(1.58e-05)]_77 chrX:22455161-22455281 3.39e-01 120 chr3L:1351214-1351334 5.47e-01 120 chr4:610959-611079 7.35e-01 120 chrX:23096449-23096569 1.51e-01 120 chr2L:10976188-10976308 5.78e-01 120 chr3L:17241953-17242073 2.88e-02 120 chr2R:22885812-22885932 9.22e-01 120 chr3L:19913487-19913607 6.66e-01 120 chr3R:17795190-17795310 6.31e-01 120 chr3L:20028821-20028941 2.21e-01 120 chr3L:10661545-10661665 5.09e-01 120 chr2L:6481092-6481212 9.87e-01 120 chr3L:11074170-11074290 2.16e-01 120 chrX:8176773-8176893 9.32e-01 120 chr2L:10226493-10226613 9.99e-01 120 chr3R:28599086-28599206 2.31e-01 62_[+1(6.03e-05)]_50 chr3L:15576687-15576807 7.07e-01 120 chr3L:6495079-6495199 1.89e-01 120 chr2R:17419433-17419553 2.16e-02 38_[+1(1.58e-05)]_74 chr2R:23970520-23970640 6.76e-02 120 chr2R:11359919-11360039 1.22e-01 29_[+1(1.58e-05)]_22_[+1(1.58e-05)]_\ 53 chr2R:4788431-4788551 9.73e-01 120 chr2R:22186041-22186161 8.57e-01 120 chrX:8152077-8152197 2.09e-01 49_[+3(5.17e-05)]_63 chr2R:12179653-12179773 8.86e-01 120 chr3L:17513645-17513765 2.06e-02 22_[+1(1.58e-05)]_90 chrX:15992526-15992646 9.82e-01 120 chr3R:9762944-9763064 7.37e-01 120 chr2L:9758660-9758780 6.23e-01 120 chrX:17579015-17579135 8.61e-01 120 chrX:7933103-7933223 4.29e-01 120 chr3L:16113259-16113379 8.68e-01 120 chr2R:8906789-8906909 2.24e-01 120 chr2R:4744660-4744780 9.93e-01 120 chrX:15909463-15909583 9.31e-01 120 chrX:12018721-12018841 8.62e-01 120 chr2R:18411320-18411440 6.92e-01 120 chr3L:7369964-7370084 9.73e-01 120 chr3R:4645385-4645505 9.96e-01 120 chr2L:11282139-11282259 3.29e-01 120 chr3R:24038285-24038405 1.76e-01 120 chr3R:4399805-4399925 5.92e-02 51_[+1(3.06e-05)]_61 chrX:15860167-15860287 1.00e+00 120 chr3R:27681860-27681980 2.65e-01 120 chrX:21605067-21605187 6.69e-01 120 chr3L:5603773-5603893 2.37e-01 12_[+1(6.03e-05)]_100 chr2R:5760900-5761020 6.50e-01 120 chrX:8592252-8592372 8.69e-01 120 chr3L:5561387-5561507 3.27e-01 64_[+1(9.14e-05)]_48 chr2L:22982245-22982365 9.71e-01 120 chr3R:27922138-27922258 9.70e-01 120 chrX:15991757-15991877 1.15e-01 5_[+2(1.29e-05)]_107 chrX:5764647-5764767 7.23e-01 120 chr3R:5659665-5659785 6.86e-03 31_[+4(1.34e-05)]_55_[+5(5.43e-05)]_\ 18 chr2R:17019300-17019420 9.42e-01 120 chr2R:13198936-13199056 8.08e-01 120 chr2L:3163657-3163777 5.55e-01 120 chr2L:5071234-5071354 6.35e-01 120 chr3L:23715162-23715282 1.00e+00 120 chr2L:15271805-15271925 9.22e-01 120 chrX:10213058-10213178 9.04e-01 120 chrX:1865850-1865970 9.84e-01 120 chr3R:29131272-29131392 9.98e-01 120 chr3L:11062550-11062670 9.44e-01 120 chr2L:3452506-3452626 9.83e-01 120 chr3R:13683058-13683178 7.50e-01 120 chr3R:21660232-21660352 8.56e-01 120 chr3R:25065426-25065546 9.97e-01 120 chrX:18137382-18137502 7.14e-02 26_[+4(1.34e-05)]_86 chr3L:11609260-11609380 9.67e-01 120 chr2R:9131727-9131847 8.65e-01 120 chr3L:6173638-6173758 8.73e-01 120 chr2R:7962547-7962667 9.93e-01 120 chr2L:10977109-10977229 4.12e-02 74_[+1(1.58e-05)]_1_[+1(6.03e-05)]_\ 29 chr2L:2874285-2874405 1.00e+00 120 chr3L:199521-199641 7.43e-04 67_[+3(5.17e-05)]_2_[+4(1.34e-05)]_\ 35 chr2R:14164431-14164551 6.79e-01 120 chr3R:27947807-27947927 1.18e-01 31_[+1(1.58e-05)]_81 chr3L:12471867-12471987 3.65e-01 120 chr2R:16001792-16001912 2.52e-04 96_[+4(1.34e-05)]_16 chr4:1060537-1060657 8.91e-01 120 chr2L:10206762-10206882 1.14e-01 66_[+1(1.58e-05)]_46 chr2R:21616720-21616840 6.14e-01 120 chr3L:16348140-16348260 7.33e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************