******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Lpt.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:21896335-21896455 1.0000 120 chr3L:21364330-21364450 1.0000 120 chr2L:563454-563574 1.0000 120 chr3R:21831146-21831266 1.0000 120 chr3L:17986516-17986636 1.0000 120 chr2L:121590-121710 1.0000 120 chr2R:12663235-12663355 1.0000 120 chr3L:17979745-17979865 1.0000 120 chr3R:16523477-16523597 1.0000 120 chr3L:13878030-13878150 1.0000 120 chrX:1988829-1988949 1.0000 120 chr3L:17993843-17993963 1.0000 120 chr3L:18005667-18005787 1.0000 120 chr2R:10135055-10135175 1.0000 120 chrX:11492292-11492412 1.0000 120 chr2L:14318740-14318860 1.0000 120 chr2L:7189796-7189916 1.0000 120 chr2R:13023048-13023168 1.0000 120 chr3L:21229939-21230059 1.0000 120 chr3R:31314625-31314745 1.0000 120 chr3L:3656979-3657099 1.0000 120 chr2L:17467102-17467222 1.0000 120 chr3R:6214384-6214504 1.0000 120 chr2R:23761515-23761635 1.0000 120 chr2R:7249978-7250098 1.0000 120 chr3L:6275035-6275155 1.0000 120 chr2R:21926439-21926559 1.0000 120 chr3L:10376801-10376921 1.0000 120 chr3L:21237161-21237281 1.0000 120 chr3L:18082110-18082230 1.0000 120 chr3L:5251509-5251629 1.0000 120 chr2R:19578855-19578975 1.0000 120 chr2L:18468701-18468821 1.0000 120 chr3R:26543526-26543646 1.0000 120 chr3L:741845-741965 1.0000 120 chr3L:21224784-21224904 1.0000 120 chr3L:21893877-21893997 1.0000 120 chrX:16373642-16373762 1.0000 120 chr2L:19307808-19307928 1.0000 120 chrX:3423461-3423581 1.0000 120 chr2L:664403-664523 1.0000 120 chr2L:3149378-3149498 1.0000 120 chr3R:31443630-31443750 1.0000 120 chr2L:244004-244124 1.0000 120 chr3L:19011315-19011435 1.0000 120 chr3L:8319259-8319379 1.0000 120 chr2L:18945962-18946082 1.0000 120 chr2L:18464105-18464225 1.0000 120 chr2L:18460071-18460191 1.0000 120 chr2R:6108675-6108795 1.0000 120 chr3L:21892837-21892957 1.0000 120 chr3L:19329647-19329767 1.0000 120 chr2L:5186723-5186843 1.0000 120 chr3R:23416697-23416817 1.0000 120 chr3L:5950585-5950705 1.0000 120 chrX:1966107-1966227 1.0000 120 chr2R:18346824-18346944 1.0000 120 chr3R:10282192-10282312 1.0000 120 chrX:16765924-16766044 1.0000 120 chrX:5924538-5924658 1.0000 120 chr2L:13246373-13246493 1.0000 120 chr2L:4069175-4069295 1.0000 120 chr3L:21894926-21895046 1.0000 120 chrX:11531419-11531539 1.0000 120 chrX:3189906-3190026 1.0000 120 chr2R:19982133-19982253 1.0000 120 chr2L:20340764-20340884 1.0000 120 chr2L:2478452-2478572 1.0000 120 chr3L:8765609-8765729 1.0000 120 chr2R:18899137-18899257 1.0000 120 chr3L:21644393-21644513 1.0000 120 chr3L:11138953-11139073 1.0000 120 chr3L:11366639-11366759 1.0000 120 chr2R:10847322-10847442 1.0000 120 chr3L:5579948-5580068 1.0000 120 chr2L:5567283-5567403 1.0000 120 chr3L:17500533-17500653 1.0000 120 chr3R:25051597-25051717 1.0000 120 chrX:15156478-15156598 1.0000 120 chr3L:19699811-19699931 1.0000 120 chr3R:8234039-8234159 1.0000 120 chr2R:23020492-23020612 1.0000 120 chr3L:3389123-3389243 1.0000 120 chr2R:6166952-6167072 1.0000 120 chrX:18014747-18014867 1.0000 120 chr3R:22150060-22150180 1.0000 120 chr3R:26500471-26500591 1.0000 120 chr2R:18243966-18244086 1.0000 120 chrX:6632082-6632202 1.0000 120 chr3L:19315014-19315134 1.0000 120 chr3L:3649696-3649816 1.0000 120 chr3L:787737-787857 1.0000 120 chr3L:8041823-8041943 1.0000 120 chrX:17658947-17659067 1.0000 120 chr2R:8646566-8646686 1.0000 120 chr2L:3002064-3002184 1.0000 120 chrX:19359260-19359380 1.0000 120 chr2R:20568439-20568559 1.0000 120 chr2R:14020735-14020855 1.0000 120 chr3L:5626589-5626709 1.0000 120 chrX:6305499-6305619 1.0000 120 chr2R:11315548-11315668 1.0000 120 chr3L:7617736-7617856 1.0000 120 chr2L:16588947-16589067 1.0000 120 chr2L:20477051-20477171 1.0000 120 chrX:1976137-1976257 1.0000 120 chr3R:15112384-15112504 1.0000 120 chr2R:16212929-16213049 1.0000 120 chr3L:16218059-16218179 1.0000 120 chrX:19900021-19900141 1.0000 120 chrX:6708255-6708375 1.0000 120 chrX:5013178-5013298 1.0000 120 chrX:724610-724730 1.0000 120 chr3L:7264238-7264358 1.0000 120 chr3R:30344651-30344771 1.0000 120 chr2R:13032223-13032343 1.0000 120 chr3R:20604224-20604344 1.0000 120 chr3R:24811523-24811643 1.0000 120 chr3R:4187048-4187168 1.0000 120 chr2R:13769569-13769689 1.0000 120 chr3R:12297394-12297514 1.0000 120 chr2R:14326141-14326261 1.0000 120 chr3L:9745541-9745661 1.0000 120 chrX:8521631-8521751 1.0000 120 chr3R:11595668-11595788 1.0000 120 chr2R:9032784-9032904 1.0000 120 chr2R:8358041-8358161 1.0000 120 chrX:9586162-9586282 1.0000 120 chr3L:21052440-21052560 1.0000 120 chr3R:31243213-31243333 1.0000 120 chr2L:18752182-18752302 1.0000 120 chr3R:14280476-14280596 1.0000 120 chr3L:10792701-10792821 1.0000 120 chr3L:10709263-10709383 1.0000 120 chr3R:31709322-31709442 1.0000 120 chr2R:24746511-24746631 1.0000 120 chr2L:20721605-20721725 1.0000 120 chrX:1614520-1614640 1.0000 120 chr2R:21552771-21552891 1.0000 120 chr3R:31768362-31768482 1.0000 120 chr2R:12720651-12720771 1.0000 120 chr2L:7949884-7950004 1.0000 120 chr3L:15824689-15824809 1.0000 120 chr2L:18466033-18466153 1.0000 120 chr2L:20335071-20335191 1.0000 120 chr3L:9056602-9056722 1.0000 120 chr3L:20983441-20983561 1.0000 120 chr3L:6308811-6308931 1.0000 120 chrX:1119346-1119466 1.0000 120 chr3R:29072919-29073039 1.0000 120 chr2L:21246814-21246934 1.0000 120 chr2L:19317935-19318055 1.0000 120 chr2R:21801040-21801160 1.0000 120 chr3L:18013362-18013482 1.0000 120 chr3L:17977969-17978089 1.0000 120 chr3R:16368419-16368539 1.0000 120 chr3R:26019319-26019439 1.0000 120 chr2L:172025-172145 1.0000 120 chr2L:13268333-13268453 1.0000 120 chr3L:18080126-18080246 1.0000 120 chr3R:4130469-4130589 1.0000 120 chr3R:21703507-21703627 1.0000 120 chr2R:11324007-11324127 1.0000 120 chr3R:23395925-23396045 1.0000 120 chr3L:13180424-13180544 1.0000 120 chr2L:14207752-14207872 1.0000 120 chr3R:29281250-29281370 1.0000 120 chr3L:2481569-2481689 1.0000 120 chr3L:9566983-9567103 1.0000 120 chr3R:27181178-27181298 1.0000 120 chr2L:18348690-18348810 1.0000 120 chr3L:3772734-3772854 1.0000 120 chr2L:16498280-16498400 1.0000 120 chr2R:10691977-10692097 1.0000 120 chr2R:17077084-17077204 1.0000 120 chr2R:18343014-18343134 1.0000 120 chr3L:17572187-17572307 1.0000 120 chr2R:15027496-15027616 1.0000 120 chrX:335012-335132 1.0000 120 chrX:20130579-20130699 1.0000 120 chrX:8259974-8260094 1.0000 120 chrX:1970642-1970762 1.0000 120 chr3L:8782167-8782287 1.0000 120 chr2R:6102660-6102780 1.0000 120 chr3R:20785079-20785199 1.0000 120 chr3R:24996627-24996747 1.0000 120 chr2R:23744738-23744858 1.0000 120 chr3L:19326183-19326303 1.0000 120 chr2R:17243766-17243886 1.0000 120 chr3L:16042733-16042853 1.0000 120 chr3R:30005478-30005598 1.0000 120 chr3L:21080578-21080698 1.0000 120 chr3L:12040435-12040555 1.0000 120 chr3L:10315035-10315155 1.0000 120 chr3R:28623676-28623796 1.0000 120 chr3L:17975724-17975844 1.0000 120 chr2L:3012884-3013004 1.0000 120 chr2L:4375214-4375334 1.0000 120 chr3R:7089652-7089772 1.0000 120 chr2R:15233520-15233640 1.0000 120 chr3L:7611374-7611494 1.0000 120 chr3L:17500733-17500853 1.0000 120 chr2L:2162480-2162600 1.0000 120 chr2L:18005680-18005800 1.0000 120 chr3R:8256163-8256283 1.0000 120 chrX:13238631-13238751 1.0000 120 chr3R:30100731-30100851 1.0000 120 chr3L:19234518-19234638 1.0000 120 chr3R:14684112-14684232 1.0000 120 chrX:11653164-11653284 1.0000 120 chr2L:15392451-15392571 1.0000 120 chr3R:27167503-27167623 1.0000 120 chr3R:31680009-31680129 1.0000 120 chr2R:22148206-22148326 1.0000 120 chr2L:7949115-7949235 1.0000 120 chrX:3779104-3779224 1.0000 120 chr2L:14624017-14624137 1.0000 120 chr3R:8922962-8923082 1.0000 120 chr2L:4347178-4347298 1.0000 120 chr2R:23306121-23306241 1.0000 120 chr3R:26496495-26496615 1.0000 120 chr3R:15567090-15567210 1.0000 120 chr3R:21733131-21733251 1.0000 120 chr2L:19036333-19036453 1.0000 120 chr2R:19463384-19463504 1.0000 120 chr3R:24261557-24261677 1.0000 120 chr2L:12013931-12014051 1.0000 120 chrX:4970020-4970140 1.0000 120 chr3R:30164271-30164391 1.0000 120 chr2L:1926115-1926235 1.0000 120 chr3L:18248841-18248961 1.0000 120 chr3R:14292340-14292460 1.0000 120 chr3L:18819523-18819643 1.0000 120 chr3L:12673048-12673168 1.0000 120 chr3L:19295103-19295223 1.0000 120 chr2L:19252543-19252663 1.0000 120 chr2L:7073148-7073268 1.0000 120 chr2L:9231860-9231980 1.0000 120 chr2L:7010013-7010133 1.0000 120 chr3L:18800292-18800412 1.0000 120 chrX:8839476-8839596 1.0000 120 chrX:7179392-7179512 1.0000 120 chr3L:10352230-10352350 1.0000 120 chr3L:779151-779271 1.0000 120 chr3R:4687368-4687488 1.0000 120 chr3R:24261759-24261879 1.0000 120 chr3L:2636481-2636601 1.0000 120 chr3R:31482281-31482401 1.0000 120 chr3L:15252710-15252830 1.0000 120 chr3L:14422285-14422405 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Lpt/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Lpt.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.316 C 0.192 G 0.188 T 0.304 Background letter frequencies (from file dataset with add-one prior applied): A 0.316 C 0.192 G 0.188 T 0.304 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGGGGCRG MEME-1 width = 8 sites = 20 llr = 195 E-value = 6.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGGCRG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::36: pos.-specific C 211:17:3 probability G 89aaa:47 matrix T :::::::: bits 2.4 * 2.2 *** 1.9 **** 1.7 ***** Relative 1.4 ***** * Entropy 1.2 ****** * (14.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGCAG consensus C AGC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCRG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10135055-10135175 75 1.59e-06 GGAAATCATG GGGGGCGG CGAAAGACGC chr3R:24261557-24261677 81 4.27e-06 GCCGTTTATG GGGGGCAG AAGAACTGGC chr3R:21733131-21733251 101 4.27e-06 GCATCGCCTG GGGGGCAG CGTATGATGC chr2R:21552771-21552891 110 4.27e-06 CGACGGCAGC GGGGGCAG CGG chr3R:30100731-30100851 80 5.90e-06 AAGCAGAAGA GGGGGCGC GGCAGGGGGA chr3L:17572187-17572307 84 5.90e-06 ggcattcgga gggggcgC TCTTTTTCAC chr3L:12040435-12040555 95 8.64e-06 TTCCGACGAC GGGGGCAC ATGAAGTCAT chr2L:121590-121710 31 8.64e-06 TAGAGCGATA GGGGGCAC TTACTCCACT chr2R:19578855-19578975 7 1.13e-05 TTGCGC GGGGGAGG AGGGTGTGCC chr2R:12663235-12663355 13 1.73e-05 GATGTGGAAG GGGGGAAG GGGATGTGCA chr3R:30005478-30005598 86 2.00e-05 TTCCGGCCGG CGGGGCAG GGACCGGTTT chr3R:24996627-24996747 78 2.00e-05 ATGAATAAAA CGGGGCAG ATGTACGATG chr2L:2162480-2162600 22 2.43e-05 AGGGGCAAAA GGGGGAGC GGCCGAGTCG chr2R:6102660-6102780 41 2.43e-05 CACTGCCACT GCGGGCGG CGCAGTCGTC chr2L:20477051-20477171 19 2.43e-05 AGGAGATCCA GGGGGAGC CGTGGAGGGG chr2R:10847322-10847442 68 2.43e-05 GGGAAAAGTG GCGGGCGG TTGATGGAGC chr2R:19463384-19463504 87 4.65e-05 AAGAGTGACA CGGGGAAG CGTAGAGAGC chrX:19900021-19900141 9 4.65e-05 GGAGAAGG CGGGGAAG ATGCAGCATG chrX:1976137-1976257 89 5.36e-05 ttgttgCGAT GGCGGCAG ATAGCGCACA chr3L:21644393-21644513 108 5.36e-05 TTGCGATTCG GGGGCCAG CGTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCRG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10135055-10135175 1.6e-06 74_[+1]_38 chr3R:24261557-24261677 4.3e-06 80_[+1]_32 chr3R:21733131-21733251 4.3e-06 100_[+1]_12 chr2R:21552771-21552891 4.3e-06 109_[+1]_3 chr3R:30100731-30100851 5.9e-06 79_[+1]_33 chr3L:17572187-17572307 5.9e-06 83_[+1]_29 chr3L:12040435-12040555 8.6e-06 94_[+1]_18 chr2L:121590-121710 8.6e-06 30_[+1]_82 chr2R:19578855-19578975 1.1e-05 6_[+1]_106 chr2R:12663235-12663355 1.7e-05 12_[+1]_100 chr3R:30005478-30005598 2e-05 85_[+1]_27 chr3R:24996627-24996747 2e-05 77_[+1]_35 chr2L:2162480-2162600 2.4e-05 21_[+1]_91 chr2R:6102660-6102780 2.4e-05 40_[+1]_72 chr2L:20477051-20477171 2.4e-05 18_[+1]_94 chr2R:10847322-10847442 2.4e-05 67_[+1]_45 chr2R:19463384-19463504 4.6e-05 86_[+1]_26 chrX:19900021-19900141 4.6e-05 8_[+1]_104 chrX:1976137-1976257 5.4e-05 88_[+1]_24 chr3L:21644393-21644513 5.4e-05 107_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCRG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGGCRG width=8 seqs=20 chr2R:10135055-10135175 ( 75) GGGGGCGG 1 chr3R:24261557-24261677 ( 81) GGGGGCAG 1 chr3R:21733131-21733251 ( 101) GGGGGCAG 1 chr2R:21552771-21552891 ( 110) GGGGGCAG 1 chr3R:30100731-30100851 ( 80) GGGGGCGC 1 chr3L:17572187-17572307 ( 84) GGGGGCGC 1 chr3L:12040435-12040555 ( 95) GGGGGCAC 1 chr2L:121590-121710 ( 31) GGGGGCAC 1 chr2R:19578855-19578975 ( 7) GGGGGAGG 1 chr2R:12663235-12663355 ( 13) GGGGGAAG 1 chr3R:30005478-30005598 ( 86) CGGGGCAG 1 chr3R:24996627-24996747 ( 78) CGGGGCAG 1 chr2L:2162480-2162600 ( 22) GGGGGAGC 1 chr2R:6102660-6102780 ( 41) GCGGGCGG 1 chr2L:20477051-20477171 ( 19) GGGGGAGC 1 chr2R:10847322-10847442 ( 68) GCGGGCGG 1 chr2R:19463384-19463504 ( 87) CGGGGAAG 1 chrX:19900021-19900141 ( 9) CGGGGAAG 1 chrX:1976137-1976257 ( 89) GGCGGCAG 1 chr3L:21644393-21644513 ( 108) GGGGCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCRG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9376 E= 6.0e-002 -1097 6 209 -1097 -1097 -94 226 -1097 -1097 -194 233 -1097 -1097 -1097 241 -1097 -1097 -194 233 -1097 -8 187 -1097 -1097 92 -1097 109 -1097 -1097 65 189 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCRG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 6.0e-002 0.000000 0.200000 0.800000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.050000 0.950000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.050000 0.950000 0.000000 0.300000 0.700000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 0.300000 0.700000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCRG MEME-1 regular expression -------------------------------------------------------------------------------- [GC]GGGG[CA][AG][GC] -------------------------------------------------------------------------------- Time 7.50 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGCWGY MEME-2 width = 8 sites = 33 llr = 295 E-value = 6.7e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGCWGY MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::2::4:: pos.-specific C :a::9137 probability G a:1a::7: matrix T ::8:15:3 bits 2.4 ** * 2.2 ** * 1.9 ** ** 1.7 ** ** Relative 1.4 ** ** * Entropy 1.2 ** ** ** (12.9 bits) 1.0 ** ** ** 0.7 ***** ** 0.5 ***** ** 0.2 ******** 0.0 -------- Multilevel GCTGCTGC consensus ACT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCWGY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:10352230-10352350 26 4.35e-06 TTGCCTtgct gctgctgc ttctgcttta chr2L:12013931-12014051 91 4.35e-06 tgctgcgttt gctgctgc tCCCAGCAGG chr3R:27181178-27181298 20 4.35e-06 GTTTTTTCGT GCTGCTGC GGTCTTGGGA chrX:6632082-6632202 35 4.35e-06 gttgtttttt gctgctgC TTTACGGATT chr3L:5950585-5950705 17 4.35e-06 ctgcgatgtt gctgctgc tactCCGACG chr2L:2162480-2162600 90 8.86e-06 CTCGTATCTT GCTGCAGC AGCAAACGGA chr2L:121590-121710 2 8.86e-06 C GCTGCAGC GGGTGTATCG chr3L:21896335-21896455 4 8.86e-06 CTG GCTGCAGC CAGCGCTTCC chr2L:14624017-14624137 4 1.79e-05 AGA GCTGCACC CAGAGAAAAT chr3L:17500733-17500853 18 1.79e-05 TTGCTTGCCC GCTGcacc acaaacacac chrX:19900021-19900141 64 2.75e-05 TGCACGACCT GCTGCTGT GGGCAGCAGC chr2L:4069175-4069295 72 2.75e-05 CATAAATGCC GCTGCTGT TGCAAAAAAA chr2L:18460071-18460191 66 2.75e-05 GCCATCATCT GCTGCTGT CTCTTTCGCT chr3L:6275035-6275155 111 2.75e-05 ATCATAGACC GCTGCTGT CG chr3L:3389123-3389243 71 3.47e-05 AGTTTGCCAC GCTGCAGT TAAGCCGCAC chr3L:9056602-9056722 73 4.19e-05 CGAATCGTCA GCGGCTGC CAGACCGTGA chr3L:17977969-17978089 6 4.94e-05 cagca gcagcagc agcagcagca chr3L:21894926-21895046 24 4.94e-05 agcggcagca gcagcagc agccgcagaa chr2R:6108675-6108795 77 4.94e-05 accagcagca gcagcagc agTAGGCTGC chr2L:4375214-4375334 3 5.92e-05 CA GCTGCTCT GCTCCGCTTT chr3R:20785079-20785199 98 5.92e-05 GTACTTCCGC GCTGCCCC CAAAAGAGGC chrX:1970642-1970762 11 5.92e-05 GTTCTGCTTA GCTGCTCT ATGGCCATCT chr3L:18013362-18013482 109 5.92e-05 ATGCCGATCC GCTGCTCT GCAA chr3L:11366639-11366759 40 5.92e-05 GACCCACAGT GCTGCCCC CGACCACCCA chr3L:2481569-2481689 27 6.92e-05 GTTTCATATG GCTGCACT GGCAAAAAAA chr3L:17500533-17500653 24 6.92e-05 AGTTCTTATT GCTGCGGC TGGGACTATT chr3R:20604224-20604344 40 9.55e-05 AGTGGGTTGC GCGGCACC GATCCGAACC chr3R:31482281-31482401 39 1.19e-04 GAAGTAATAA GCTGTAGC TGAGACTCTG chr2L:15392451-15392571 37 1.19e-04 ATATTATTAA GCTGTAGC AGTTTTATGT chr3L:19234518-19234638 108 1.19e-04 CTTTTCTTTT GCAGCTGT GTGAG chr3R:16368419-16368539 113 1.19e-04 TTGGAATTTA GCAGCCGC chrX:19359260-19359380 4 1.19e-04 GAA GCTGTAGC TGGCGCGTTG chrX:11531419-11531539 13 1.19e-04 TCAATGCTTG GCGGCTGT AAGCTAAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCWGY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:10352230-10352350 4.3e-06 25_[+2]_87 chr2L:12013931-12014051 4.3e-06 90_[+2]_22 chr3R:27181178-27181298 4.3e-06 19_[+2]_93 chrX:6632082-6632202 4.3e-06 34_[+2]_78 chr3L:5950585-5950705 4.3e-06 16_[+2]_96 chr2L:2162480-2162600 8.9e-06 89_[+2]_23 chr2L:121590-121710 8.9e-06 1_[+2]_111 chr3L:21896335-21896455 8.9e-06 3_[+2]_109 chr2L:14624017-14624137 1.8e-05 3_[+2]_109 chr3L:17500733-17500853 1.8e-05 17_[+2]_95 chrX:19900021-19900141 2.8e-05 63_[+2]_49 chr2L:4069175-4069295 2.8e-05 71_[+2]_41 chr2L:18460071-18460191 2.8e-05 65_[+2]_47 chr3L:6275035-6275155 2.8e-05 110_[+2]_2 chr3L:3389123-3389243 3.5e-05 70_[+2]_42 chr3L:9056602-9056722 4.2e-05 72_[+2]_40 chr3L:17977969-17978089 4.9e-05 5_[+2]_107 chr3L:21894926-21895046 4.9e-05 23_[+2]_89 chr2R:6108675-6108795 4.9e-05 76_[+2]_36 chr2L:4375214-4375334 5.9e-05 2_[+2]_110 chr3R:20785079-20785199 5.9e-05 97_[+2]_15 chrX:1970642-1970762 5.9e-05 10_[+2]_102 chr3L:18013362-18013482 5.9e-05 108_[+2]_4 chr3L:11366639-11366759 5.9e-05 39_[+2]_73 chr3L:2481569-2481689 6.9e-05 26_[+2]_86 chr3L:17500533-17500653 6.9e-05 23_[+2]_89 chr3R:20604224-20604344 9.5e-05 39_[+2]_73 chr3R:31482281-31482401 0.00012 38_[+2]_74 chr2L:15392451-15392571 0.00012 36_[+2]_76 chr3L:19234518-19234638 0.00012 107_[+2]_5 chr3R:16368419-16368539 0.00012 112_[+2] chrX:19359260-19359380 0.00012 3_[+2]_109 chrX:11531419-11531539 0.00012 12_[+2]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCWGY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGCWGY width=8 seqs=33 chr3L:10352230-10352350 ( 26) GCTGCTGC 1 chr2L:12013931-12014051 ( 91) GCTGCTGC 1 chr3R:27181178-27181298 ( 20) GCTGCTGC 1 chrX:6632082-6632202 ( 35) GCTGCTGC 1 chr3L:5950585-5950705 ( 17) GCTGCTGC 1 chr2L:2162480-2162600 ( 90) GCTGCAGC 1 chr2L:121590-121710 ( 2) GCTGCAGC 1 chr3L:21896335-21896455 ( 4) GCTGCAGC 1 chr2L:14624017-14624137 ( 4) GCTGCACC 1 chr3L:17500733-17500853 ( 18) GCTGCACC 1 chrX:19900021-19900141 ( 64) GCTGCTGT 1 chr2L:4069175-4069295 ( 72) GCTGCTGT 1 chr2L:18460071-18460191 ( 66) GCTGCTGT 1 chr3L:6275035-6275155 ( 111) GCTGCTGT 1 chr3L:3389123-3389243 ( 71) GCTGCAGT 1 chr3L:9056602-9056722 ( 73) GCGGCTGC 1 chr3L:17977969-17978089 ( 6) GCAGCAGC 1 chr3L:21894926-21895046 ( 24) GCAGCAGC 1 chr2R:6108675-6108795 ( 77) GCAGCAGC 1 chr2L:4375214-4375334 ( 3) GCTGCTCT 1 chr3R:20785079-20785199 ( 98) GCTGCCCC 1 chrX:1970642-1970762 ( 11) GCTGCTCT 1 chr3L:18013362-18013482 ( 109) GCTGCTCT 1 chr3L:11366639-11366759 ( 40) GCTGCCCC 1 chr3L:2481569-2481689 ( 27) GCTGCACT 1 chr3L:17500533-17500653 ( 24) GCTGCGGC 1 chr3R:20604224-20604344 ( 40) GCGGCACC 1 chr3R:31482281-31482401 ( 39) GCTGTAGC 1 chr2L:15392451-15392571 ( 37) GCTGTAGC 1 chr3L:19234518-19234638 ( 108) GCAGCTGT 1 chr3R:16368419-16368539 ( 113) GCAGCCGC 1 chrX:19359260-19359380 ( 4) GCTGTAGC 1 chrX:11531419-11531539 ( 13) GCGGCTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCWGY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 6.7e-004 -1169 -1169 241 -1169 -1169 238 -1169 -1169 -106 -1169 -105 132 -1169 -1169 241 -1169 -1169 225 -1169 -174 42 -108 -263 58 -1169 51 195 -1169 -1169 180 -1169 13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCWGY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 6.7e-004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.151515 0.000000 0.090909 0.757576 0.000000 0.000000 1.000000 0.000000 0.000000 0.909091 0.000000 0.090909 0.424242 0.090909 0.030303 0.454545 0.000000 0.272727 0.727273 0.000000 0.000000 0.666667 0.000000 0.333333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCWGY MEME-2 regular expression -------------------------------------------------------------------------------- GCTGC[TA][GC][CT] -------------------------------------------------------------------------------- Time 13.83 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGGGCT MEME-3 width = 8 sites = 2 llr = 26 E-value = 2.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGGGCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::::a: probability G aaaaaa:: matrix T :::::::a bits 2.4 ******* 2.2 ******* 1.9 ******* 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGGCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:30100731-30100851 46 2.58e-06 TGCTATTTTA GGGGGGCT GTTCAAGCAA chr2L:18468701-18468821 24 2.58e-06 GGGCGAAAAA GGGGGGCT TGTTGCAGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30100731-30100851 2.6e-06 45_[+3]_67 chr2L:18468701-18468821 2.6e-06 23_[+3]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGGGCT width=8 seqs=2 chr3R:30100731-30100851 ( 46) GGGGGGCT 1 chr2L:18468701-18468821 ( 24) GGGGGGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.0e+004 -765 -765 240 -765 -765 -765 240 -765 -765 -765 240 -765 -765 -765 240 -765 -765 -765 240 -765 -765 -765 240 -765 -765 238 -765 -765 -765 -765 -765 171 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGCT MEME-3 regular expression -------------------------------------------------------------------------------- GGGGGGCT -------------------------------------------------------------------------------- Time 20.09 secs. ******************************************************************************** ******************************************************************************** MOTIF GCDGDGGG MEME-4 width = 8 sites = 9 llr = 95 E-value = 2.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCDGDGGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::2:4::: pos.-specific C :a:::::: probability G a:4a3aaa matrix T ::3:2::: bits 2.4 ** * *** 2.2 ** * *** 1.9 ** * *** 1.7 ** * *** Relative 1.4 ** * *** Entropy 1.2 ** * *** (15.3 bits) 1.0 ** * *** 0.7 ** * *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGGAGGG consensus T G sequence A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGDGGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:19036333-19036453 113 4.27e-06 GTGTGCGAGT GCGGAGGG chr3L:21892837-21892957 32 4.27e-06 GAGAGGCGGA GCGGAGGG CTTAGTGCGT chrX:1614520-1614640 90 6.85e-06 gccagGAGGG GCTGGGGG TGTGGGGAAC chr2R:7249978-7250098 19 6.85e-06 GAAACCAGTT GCTGGGGG TTGATGGCCC chr3L:17572187-17572307 65 9.43e-06 Tgggtggcgg gcggtggg cggcattcgg chr3L:9056602-9056722 93 9.43e-06 GACCGTGACA GCGGTGGG CCAAACAAGT chr3L:17977969-17978089 96 1.38e-05 GGCTAGGCTG GCTGAGGG AGAGAGACGG chr3R:30100731-30100851 89 1.64e-05 AGGGGGCGCG GCAGGGGG ACACCCGTTA chrX:3423461-3423581 30 2.09e-05 ATCGATATTC GCAGAGGG TATTTTGACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGDGGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:19036333-19036453 4.3e-06 112_[+4] chr3L:21892837-21892957 4.3e-06 31_[+4]_81 chrX:1614520-1614640 6.8e-06 89_[+4]_23 chr2R:7249978-7250098 6.8e-06 18_[+4]_94 chr3L:17572187-17572307 9.4e-06 64_[+4]_48 chr3L:9056602-9056722 9.4e-06 92_[+4]_20 chr3L:17977969-17978089 1.4e-05 95_[+4]_17 chr3R:30100731-30100851 1.6e-05 88_[+4]_24 chrX:3423461-3423581 2.1e-05 29_[+4]_83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGDGGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCDGDGGG width=8 seqs=9 chr2L:19036333-19036453 ( 113) GCGGAGGG 1 chr3L:21892837-21892957 ( 32) GCGGAGGG 1 chrX:1614520-1614640 ( 90) GCTGGGGG 1 chr2R:7249978-7250098 ( 19) GCTGGGGG 1 chr3L:17572187-17572307 ( 65) GCGGTGGG 1 chr3L:9056602-9056722 ( 93) GCGGTGGG 1 chr3L:17977969-17978089 ( 96) GCTGAGGG 1 chr3R:30100731-30100851 ( 89) GCAGGGGG 1 chrX:3423461-3423581 ( 30) GCAGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGDGGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.0203 E= 2.3e+004 -982 -982 241 -982 -982 238 -982 -982 -51 -982 124 13 -982 -982 241 -982 49 -982 82 -45 -982 -982 241 -982 -982 -982 241 -982 -982 -982 241 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGDGGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.3e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.222222 0.000000 0.444444 0.333333 0.000000 0.000000 1.000000 0.000000 0.444444 0.000000 0.333333 0.222222 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGDGGG MEME-4 regular expression -------------------------------------------------------------------------------- GC[GTA]G[AGT]GGG -------------------------------------------------------------------------------- Time 26.33 secs. ******************************************************************************** ******************************************************************************** MOTIF CCACCCMY MEME-5 width = 8 sites = 19 llr = 186 E-value = 3.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACCCMY MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::7:::4: pos.-specific C aa2aa955 probability G ::1::11: matrix T :::::::5 bits 2.4 ** ** 2.2 ** *** 1.9 ** *** 1.7 ** *** Relative 1.4 ** *** Entropy 1.2 ** *** (14.1 bits) 1.0 ** *** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCACCCCT consensus C AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCMY MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11531419-11531539 91 3.04e-06 TCAATCTACC CCACCCCC ATTTTCGATG chr3R:26543526-26543646 104 3.04e-06 CCATTCACCA CCACCCCC TTTTTGGCC chr2L:18466033-18466153 112 7.85e-06 CGTCTCGCTC CCACCCCT T chrX:17658947-17659067 53 7.85e-06 TGTGCAGTTT CCACCCCT CTATCCCTTG chr3L:17500533-17500653 58 7.85e-06 GTAAAATGTA CCACCCCT AGGTGGCGTA chr3L:11138953-11139073 103 7.85e-06 ccccctcctt ccacccct ccACGCTCCG chr3L:2636481-2636601 106 9.70e-06 ACCATAACTC CCCCCCCC GTTTCTG chr3L:11366639-11366759 51 1.47e-05 CTGCCCCCGA CCACCCAC CGCACACCTT chr2R:19982133-19982253 45 1.47e-05 TTGAGAAAGT CCACCCAC TAAGAAACCA chrX:16765924-16766044 72 1.47e-05 TAATAGTTTT CCACCCAC AGTACAACAG chr2L:18460071-18460191 46 1.76e-05 TTCCCCAGCA CCCCCCCT TTGCCATCAT chr3R:20785079-20785199 33 2.55e-05 CCCTTATACC CCACCCAT GTGCGCATAA chr2R:6102660-6102780 78 2.55e-05 CGCCACCACC CCACCCAT CTACGTGTGC chr3L:21224784-21224904 84 3.34e-05 CTCCCCTTTT CCACCCGC CCATCTTTAA chr3L:21052440-21052560 106 3.62e-05 TCCCCACCAA CCGCCCCT CACCCGG chr2L:12013931-12014051 2 4.10e-05 C CCCCCCAT TCCATACAGA chr3R:10282192-10282312 5 4.87e-05 GACT CCGCCCAC ACTCTGATTT chr3L:12040435-12040555 21 5.81e-05 TGTGCCCGTA CCCCCCGT TGTCTTCTTG chrX:18014747-18014867 25 6.29e-05 TTCACATTTT CCACCGCC CCGCGCGGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCMY MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11531419-11531539 3e-06 90_[+5]_22 chr3R:26543526-26543646 3e-06 103_[+5]_9 chr2L:18466033-18466153 7.9e-06 111_[+5]_1 chrX:17658947-17659067 7.9e-06 52_[+5]_60 chr3L:17500533-17500653 7.9e-06 57_[+5]_55 chr3L:11138953-11139073 7.9e-06 102_[+5]_10 chr3L:2636481-2636601 9.7e-06 105_[+5]_7 chr3L:11366639-11366759 1.5e-05 50_[+5]_62 chr2R:19982133-19982253 1.5e-05 44_[+5]_68 chrX:16765924-16766044 1.5e-05 71_[+5]_41 chr2L:18460071-18460191 1.8e-05 45_[+5]_67 chr3R:20785079-20785199 2.6e-05 32_[+5]_80 chr2R:6102660-6102780 2.6e-05 77_[+5]_35 chr3L:21224784-21224904 3.3e-05 83_[+5]_29 chr3L:21052440-21052560 3.6e-05 105_[+5]_7 chr2L:12013931-12014051 4.1e-05 1_[+5]_111 chr3R:10282192-10282312 4.9e-05 4_[+5]_108 chr3L:12040435-12040555 5.8e-05 20_[+5]_92 chrX:18014747-18014867 6.3e-05 24_[+5]_88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCMY MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACCCMY width=8 seqs=19 chrX:11531419-11531539 ( 91) CCACCCCC 1 chr3R:26543526-26543646 ( 104) CCACCCCC 1 chr2L:18466033-18466153 ( 112) CCACCCCT 1 chrX:17658947-17659067 ( 53) CCACCCCT 1 chr3L:17500533-17500653 ( 58) CCACCCCT 1 chr3L:11138953-11139073 ( 103) CCACCCCT 1 chr3L:2636481-2636601 ( 106) CCCCCCCC 1 chr3L:11366639-11366759 ( 51) CCACCCAC 1 chr2R:19982133-19982253 ( 45) CCACCCAC 1 chrX:16765924-16766044 ( 72) CCACCCAC 1 chr2L:18460071-18460191 ( 46) CCCCCCCT 1 chr3R:20785079-20785199 ( 33) CCACCCAT 1 chr2R:6102660-6102780 ( 78) CCACCCAT 1 chr3L:21224784-21224904 ( 84) CCACCCGC 1 chr3L:21052440-21052560 ( 106) CCGCCCCT 1 chr2L:12013931-12014051 ( 2) CCCCCCAT 1 chr3R:10282192-10282312 ( 5) CCGCCCAC 1 chr3L:12040435-12040555 ( 21) CCCCCCGT 1 chrX:18014747-18014867 ( 25) CCACCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCMY MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9783 E= 3.1e+001 -1089 238 -1089 -1089 -1089 238 -1089 -1089 111 14 -84 -1089 -1089 238 -1089 -1089 -1089 238 -1089 -1089 -1089 230 -184 -1089 22 146 -84 -1089 -1089 130 -1089 79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCMY MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 3.1e+001 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.684211 0.210526 0.105263 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.947368 0.052632 0.000000 0.368421 0.526316 0.105263 0.000000 0.000000 0.473684 0.000000 0.526316 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCMY MEME-5 regular expression -------------------------------------------------------------------------------- CC[AC]CCC[CA][TC] -------------------------------------------------------------------------------- Time 32.54 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:21896335-21896455 1.20e-02 3_[+2(8.86e-06)]_109 chr3L:21364330-21364450 6.86e-02 120 chr2L:563454-563574 4.00e-01 120 chr3R:21831146-21831266 1.49e-01 120 chr3L:17986516-17986636 1.44e-01 120 chr2L:121590-121710 1.13e-06 1_[+2(8.86e-06)]_21_[+1(8.64e-06)]_\ 24_[+2(2.75e-05)]_50 chr2R:12663235-12663355 1.15e-04 12_[+1(1.73e-05)]_100 chr3L:17979745-17979865 1.00e-01 120 chr3R:16523477-16523597 9.66e-01 120 chr3L:13878030-13878150 9.95e-01 120 chrX:1988829-1988949 1.12e-01 120 chr3L:17993843-17993963 5.49e-01 120 chr3L:18005667-18005787 1.90e-02 120 chr2R:10135055-10135175 6.22e-06 74_[+1(1.59e-06)]_38 chrX:11492292-11492412 7.78e-01 120 chr2L:14318740-14318860 9.99e-01 120 chr2L:7189796-7189916 6.25e-01 120 chr2R:13023048-13023168 6.77e-02 120 chr3L:21229939-21230059 9.54e-01 120 chr3R:31314625-31314745 4.11e-01 120 chr3L:3656979-3657099 8.68e-01 120 chr2L:17467102-17467222 1.00e+00 120 chr3R:6214384-6214504 7.76e-01 120 chr2R:23761515-23761635 9.75e-01 120 chr2R:7249978-7250098 2.27e-04 18_[+4(6.85e-06)]_66_[+5(9.54e-05)]_\ 20 chr3L:6275035-6275155 9.83e-02 110_[+2(2.75e-05)]_2 chr2R:21926439-21926559 9.41e-02 120 chr3L:10376801-10376921 1.00e+00 120 chr3L:21237161-21237281 8.32e-01 120 chr3L:18082110-18082230 6.79e-04 25_[+1(6.80e-05)]_87 chr3L:5251509-5251629 4.59e-01 120 chr2R:19578855-19578975 6.78e-04 6_[+1(1.13e-05)]_106 chr2L:18468701-18468821 1.25e-03 23_[+3(2.58e-06)]_89 chr3R:26543526-26543646 3.98e-02 103_[+5(3.04e-06)]_9 chr3L:741845-741965 8.37e-01 120 chr3L:21224784-21224904 1.82e-01 83_[+5(3.34e-05)]_29 chr3L:21893877-21893997 3.70e-01 120 chrX:16373642-16373762 9.68e-01 120 chr2L:19307808-19307928 9.98e-01 120 chrX:3423461-3423581 1.34e-02 29_[+4(2.09e-05)]_83 chr2L:664403-664523 1.00e+00 120 chr2L:3149378-3149498 5.50e-01 120 chr3R:31443630-31443750 1.00e+00 120 chr2L:244004-244124 4.23e-01 120 chr3L:19011315-19011435 9.21e-01 120 chr3L:8319259-8319379 1.00e+00 120 chr2L:18945962-18946082 3.12e-02 44_[+4(8.18e-05)]_68 chr2L:18464105-18464225 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6_[+5(2.55e-05)]_35 chr3R:20785079-20785199 7.10e-03 32_[+5(2.55e-05)]_57_[+2(5.92e-05)]_\ 15 chr3R:24996627-24996747 3.55e-02 77_[+1(2.00e-05)]_35 chr2R:23744738-23744858 9.94e-01 120 chr3L:19326183-19326303 9.87e-01 120 chr2R:17243766-17243886 1.00e+00 120 chr3L:16042733-16042853 5.14e-02 120 chr3R:30005478-30005598 1.49e-03 85_[+1(2.00e-05)]_27 chr3L:21080578-21080698 7.07e-01 120 chr3L:12040435-12040555 6.81e-05 20_[+5(5.81e-05)]_66_[+1(8.64e-06)]_\ 18 chr3L:10315035-10315155 9.47e-01 120 chr3R:28623676-28623796 3.97e-01 120 chr3L:17975724-17975844 4.14e-02 120 chr2L:3012884-3013004 9.97e-01 120 chr2L:4375214-4375334 8.93e-02 2_[+2(5.92e-05)]_110 chr3R:7089652-7089772 1.33e-02 120 chr2R:15233520-15233640 9.56e-01 120 chr3L:7611374-7611494 1.00e+00 120 chr3L:17500733-17500853 5.03e-02 17_[+2(1.79e-05)]_95 chr2L:2162480-2162600 2.29e-06 8_[+4(8.18e-05)]_5_[+1(2.43e-05)]_\ 60_[+2(8.86e-06)]_23 chr2L:18005680-18005800 9.58e-01 120 chr3R:8256163-8256283 1.00e+00 120 chrX:13238631-13238751 1.00e+00 120 chr3R:30100731-30100851 1.30e-07 45_[+3(2.58e-06)]_26_[+1(5.90e-06)]_\ 1_[+4(1.64e-05)]_24 chr3L:19234518-19234638 1.56e-01 120 chr3R:14684112-14684232 9.52e-01 120 chrX:11653164-11653284 9.19e-01 120 chr2L:15392451-15392571 4.57e-01 120 chr3R:27167503-27167623 8.53e-01 120 chr3R:31680009-31680129 2.03e-01 120 chr2R:22148206-22148326 7.11e-01 120 chr2L:7949115-7949235 9.34e-01 120 chrX:3779104-3779224 4.85e-01 120 chr2L:14624017-14624137 6.43e-02 3_[+2(1.79e-05)]_109 chr3R:8922962-8923082 7.11e-01 120 chr2L:4347178-4347298 6.38e-01 120 chr2R:23306121-23306241 2.83e-01 120 chr3R:26496495-26496615 9.97e-01 120 chr3R:15567090-15567210 1.00e+00 120 chr3R:21733131-21733251 5.26e-06 100_[+1(4.27e-06)]_12 chr2L:19036333-19036453 3.11e-03 112_[+4(4.27e-06)] chr2R:19463384-19463504 3.53e-02 86_[+1(4.65e-05)]_26 chr3R:24261557-24261677 3.91e-05 80_[+1(4.27e-06)]_32 chr2L:12013931-12014051 5.61e-04 1_[+5(4.10e-05)]_61_[+2(2.75e-05)]_\ [+2(4.35e-06)]_4_[+2(4.35e-06)]_22 chrX:4970020-4970140 1.00e+00 120 chr3R:30164271-30164391 3.95e-01 120 chr2L:1926115-1926235 5.95e-01 120 chr3L:18248841-18248961 6.78e-01 120 chr3R:14292340-14292460 9.86e-01 120 chr3L:18819523-18819643 8.12e-01 120 chr3L:12673048-12673168 8.63e-01 120 chr3L:19295103-19295223 2.28e-01 120 chr2L:19252543-19252663 9.69e-01 120 chr2L:7073148-7073268 9.94e-01 120 chr2L:9231860-9231980 9.74e-01 120 chr2L:7010013-7010133 1.37e-01 120 chr3L:18800292-18800412 6.02e-01 120 chrX:8839476-8839596 1.00e+00 120 chrX:7179392-7179512 9.90e-01 120 chr3L:10352230-10352350 9.63e-02 22_[+2(4.35e-06)]_90 chr3L:779151-779271 9.94e-01 120 chr3R:4687368-4687488 9.99e-01 120 chr3R:24261759-24261879 1.00e+00 120 chr3L:2636481-2636601 1.71e-01 104_[+5(9.70e-06)]_8 chr3R:31482281-31482401 2.03e-01 120 chr3L:15252710-15252830 9.86e-01 120 chr3L:14422285-14422405 9.90e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************