******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Lhr.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:2079779-2079899 1.0000 120 chr3R:2411937-2412057 1.0000 120 chr2R:24313227-24313347 1.0000 120 chr2L:20104599-20104719 1.0000 120 chr2L:20115971-20116091 1.0000 120 chr3R:3118106-3118226 1.0000 120 chr2R:1243738-1243858 1.0000 120 chrX:4936207-4936327 1.0000 120 chr3R:3374275-3374395 1.0000 120 chrX:4931186-4931306 1.0000 120 chr2L:21559785-21559905 1.0000 120 chr2R:4730331-4730451 1.0000 120 chr3L:27173156-27173276 1.0000 120 chr2L:21713-21833 1.0000 120 chr3R:3734094-3734214 1.0000 120 chrX:11579006-11579126 1.0000 120 chr2R:1150932-1151052 1.0000 120 chr3L:23015841-23015961 1.0000 120 chr3R:4052955-4053075 1.0000 120 chr2L:22261157-22261277 1.0000 120 chr3L:21773995-21774115 1.0000 120 chr2L:21397385-21397505 1.0000 120 chr2R:5085894-5086014 1.0000 120 chr3R:16656208-16656328 1.0000 120 chr3L:2244147-2244267 1.0000 120 chr4:834991-835111 1.0000 120 chr2R:2856793-2856913 1.0000 120 chr3R:21386236-21386356 1.0000 120 chr3L:27422555-27422675 1.0000 120 chr4:721902-722022 1.0000 120 chr4:1318973-1319093 1.0000 120 chr2R:4270726-4270846 1.0000 120 chr2R:1514253-1514373 1.0000 120 chr2R:1151209-1151329 1.0000 120 chr3L:24231474-24231594 1.0000 120 chr3L:23279175-23279295 1.0000 120 chr4:835847-835967 1.0000 120 chr3L:23344868-23344988 1.0000 120 chr2R:4192478-4192598 1.0000 120 chr3L:24196245-24196365 1.0000 120 chr3R:22094093-22094213 1.0000 120 chr2R:5240184-5240304 1.0000 120 chr2L:6566160-6566280 1.0000 120 chr3L:24536052-24536172 1.0000 120 chrX:19326901-19327021 1.0000 120 chr2R:1243469-1243589 1.0000 120 chr3L:27980050-27980170 1.0000 120 chr2L:1006620-1006740 1.0000 120 chr2R:5537479-5537599 1.0000 120 chr3L:23580713-23580833 1.0000 120 chr4:796715-796835 1.0000 120 chr3L:20541698-20541818 1.0000 120 chr2R:8396769-8396889 1.0000 120 chr3R:2960545-2960665 1.0000 120 chr2R:8665380-8665500 1.0000 120 chr3L:13389995-13390115 1.0000 120 chr3R:30946426-30946546 1.0000 120 chr3L:25675655-25675775 1.0000 120 chrX:21358059-21358179 1.0000 120 chr2L:23176134-23176254 1.0000 120 chr3R:4081878-4081998 1.0000 120 chr2R:4595189-4595309 1.0000 120 chr2R:4730534-4730654 1.0000 120 chr3R:7981505-7981625 1.0000 120 chr3L:24293444-24293564 1.0000 120 chr3R:12691574-12691694 1.0000 120 chr2R:4544677-4544797 1.0000 120 chr3L:23258650-23258770 1.0000 120 chr2R:4272504-4272624 1.0000 120 chr3R:8316503-8316623 1.0000 120 chrX:1289087-1289207 1.0000 120 chr4:89881-90001 1.0000 120 chr3L:710662-710782 1.0000 120 chr2R:5693399-5693519 1.0000 120 chr2R:2565402-2565522 1.0000 120 chr2R:5753362-5753482 1.0000 120 chr2L:16738368-16738488 1.0000 120 chrX:23375384-23375504 1.0000 120 chr3R:864600-864720 1.0000 120 chr3R:3789758-3789878 1.0000 120 chr2L:21558346-21558466 1.0000 120 chr3L:20104034-20104154 1.0000 120 chr3R:31458129-31458249 1.0000 120 chr3R:4905935-4906055 1.0000 120 chr2R:9810769-9810889 1.0000 120 chr2L:14589009-14589129 1.0000 120 chr3L:28012607-28012727 1.0000 120 chr2L:20294051-20294171 1.0000 120 chr2R:954185-954305 1.0000 120 chr2R:4615357-4615477 1.0000 120 chr2R:12201077-12201197 1.0000 120 chr3L:20800296-20800416 1.0000 120 chr3R:9543581-9543701 1.0000 120 chr3R:15485955-15486075 1.0000 120 chr3L:9630008-9630128 1.0000 120 chr3R:3843096-3843216 1.0000 120 chr2R:25285652-25285772 1.0000 120 chr2R:5603008-5603128 1.0000 120 chr3L:1738463-1738583 1.0000 120 chr3L:28091308-28091428 1.0000 120 chr2R:18446493-18446613 1.0000 120 chr2R:12636214-12636334 1.0000 120 chr2R:5339278-5339398 1.0000 120 chr2L:22336211-22336331 1.0000 120 chr3L:24028391-24028511 1.0000 120 chr3L:21131524-21131644 1.0000 120 chr4:1084818-1084938 1.0000 120 chr2R:5260660-5260780 1.0000 120 chr2R:999884-1000004 1.0000 120 chr2R:4701405-4701525 1.0000 120 chr3L:17339277-17339397 1.0000 120 chr2R:13506297-13506417 1.0000 120 chr3R:2858634-2858754 1.0000 120 chrX:17422128-17422248 1.0000 120 chr3R:5733292-5733412 1.0000 120 chr2R:7735741-7735861 1.0000 120 chr3R:6780181-6780301 1.0000 120 chr2R:4728995-4729115 1.0000 120 chr3R:16624866-16624986 1.0000 120 chrX:7678976-7679096 1.0000 120 chr2L:18868-18988 1.0000 120 chr3L:15816893-15817013 1.0000 120 chr4:993651-993771 1.0000 120 chrX:2419624-2419744 1.0000 120 chr4:979949-980069 1.0000 120 chr3L:24205341-24205461 1.0000 120 chr3L:12861652-12861772 1.0000 120 chr2R:15245039-15245159 1.0000 120 chr2R:5013732-5013852 1.0000 120 chr3R:5516725-5516845 1.0000 120 chr3R:10852401-10852521 1.0000 120 chr2R:4130844-4130964 1.0000 120 chr2R:20640871-20640991 1.0000 120 chr3L:23714903-23715023 1.0000 120 chr3L:23241078-23241198 1.0000 120 chrX:2617563-2617683 1.0000 120 chr3L:26012603-26012723 1.0000 120 chr2L:19915358-19915478 1.0000 120 chr2R:8600025-8600145 1.0000 120 chr3L:27323340-27323460 1.0000 120 chr2R:20603309-20603429 1.0000 120 chr2R:12507415-12507535 1.0000 120 chr2L:5724020-5724140 1.0000 120 chr3R:3622999-3623119 1.0000 120 chr3L:18460477-18460597 1.0000 120 chr2L:13813716-13813836 1.0000 120 chr3L:18745626-18745746 1.0000 120 chr2L:22924665-22924785 1.0000 120 chr2R:25283022-25283142 1.0000 120 chr3R:28345420-28345540 1.0000 120 chr2R:22911796-22911916 1.0000 120 chr2L:18714217-18714337 1.0000 120 chr2R:9291701-9291821 1.0000 120 chr2R:1264232-1264352 1.0000 120 chr2R:5317010-5317130 1.0000 120 chr2L:5365970-5366090 1.0000 120 chr2L:20148473-20148593 1.0000 120 chr2R:4782854-4782974 1.0000 120 chr2R:6168979-6169099 1.0000 120 chr2L:22579043-22579163 1.0000 120 chr2R:9972810-9972930 1.0000 120 chr3L:14621590-14621710 1.0000 120 chr2L:20106721-20106841 1.0000 120 chr2L:14288005-14288125 1.0000 120 chr3L:3277006-3277126 1.0000 120 chr2R:5671648-5671768 1.0000 120 chr3R:28545113-28545233 1.0000 120 chr3R:4187322-4187442 1.0000 120 chr3L:14671691-14671811 1.0000 120 chr2R:3581966-3582086 1.0000 120 chr3L:16930648-16930768 1.0000 120 chr2L:21104477-21104597 1.0000 120 chr3R:6170830-6170950 1.0000 120 chrX:18788331-18788451 1.0000 120 chr3L:5749748-5749868 1.0000 120 chrY:3245825-3245945 1.0000 120 chrX:14954021-14954141 1.0000 120 chr2R:4324885-4325005 1.0000 120 chr3R:23159452-23159572 1.0000 120 chrX:11483425-11483545 1.0000 120 chr3R:6708989-6709109 1.0000 120 chr2R:8631919-8632039 1.0000 120 chr3L:20495266-20495386 1.0000 120 chr3L:176203-176323 1.0000 120 chr2L:23174345-23174465 1.0000 120 chr2R:11968968-11969088 1.0000 120 chrX:17249479-17249599 1.0000 120 chr3L:27358873-27358993 1.0000 120 chr3L:8891492-8891612 1.0000 120 chr2R:23746889-23747009 1.0000 120 chr3L:7916360-7916480 1.0000 120 chr2R:4013989-4014109 1.0000 120 chr2R:23357394-23357514 1.0000 120 chr2L:6527117-6527237 1.0000 120 chr2R:8394501-8394621 1.0000 120 chr2R:5090515-5090635 1.0000 120 chr2L:17603346-17603466 1.0000 120 chr2R:25190080-25190200 1.0000 120 chr2L:21683562-21683682 1.0000 120 chr3R:11437628-11437748 1.0000 120 chrX:11816698-11816818 1.0000 120 chrX:123918-124038 1.0000 120 chr2L:4345877-4345997 1.0000 120 chr3L:692885-693005 1.0000 120 chrX:11389442-11389562 1.0000 120 chr2L:9790789-9790909 1.0000 120 chr3L:8891288-8891408 1.0000 120 chrX:127360-127480 1.0000 120 chr2R:7454018-7454138 1.0000 120 chr2L:23075516-23075636 1.0000 120 chr3R:4479722-4479842 1.0000 120 chrX:3343864-3343984 1.0000 120 chr3R:12712559-12712679 1.0000 120 chr2L:22239762-22239882 1.0000 120 chr2R:5307164-5307284 1.0000 120 chr3R:25245541-25245661 1.0000 120 chrX:4956097-4956217 1.0000 120 chr2R:15538008-15538128 1.0000 120 chrX:16655145-16655265 1.0000 120 chr3L:7510534-7510654 1.0000 120 chr3R:24279502-24279622 1.0000 120 chr2R:17098563-17098683 1.0000 120 chr3L:27279188-27279308 1.0000 120 chr3L:17465864-17465984 1.0000 120 chr3L:327929-328049 1.0000 120 chrX:8142238-8142358 1.0000 120 chr2L:20066258-20066378 1.0000 120 chr2R:15922448-15922568 1.0000 120 chr2R:8420710-8420830 1.0000 120 chr3L:607054-607174 1.0000 120 chr4:416445-416565 1.0000 120 chr2R:11969170-11969290 1.0000 120 chr2L:22121037-22121157 1.0000 120 chrX:6756328-6756448 1.0000 120 chrX:658204-658324 1.0000 120 chr2R:7735940-7736060 1.0000 120 chr3R:6806833-6806953 1.0000 120 chr2L:7065842-7065962 1.0000 120 chr3R:20252539-20252659 1.0000 120 chrX:18830463-18830583 1.0000 120 chr3L:27136402-27136522 1.0000 120 chr3L:22749287-22749407 1.0000 120 chr4:63442-63562 1.0000 120 chr2L:11989824-11989944 1.0000 120 chr3R:9869140-9869260 1.0000 120 chr2L:9793083-9793203 1.0000 120 chr4:68697-68817 1.0000 120 chr2R:4824303-4824423 1.0000 120 chr3L:1188925-1189045 1.0000 120 chr2R:4546578-4546698 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Lhr/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Lhr.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.307 C 0.194 G 0.194 T 0.306 Background letter frequencies (from file dataset with add-one prior applied): A 0.307 C 0.194 G 0.194 T 0.306 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GYGYKRCC MEME-1 width = 8 sites = 62 llr = 515 E-value = 9.0e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYGYKRCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :2:::4:2 pos.-specific C :3:4::a8 probability G a:a:56:: matrix T :5:65::: bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * * * Relative 1.4 * * ** Entropy 1.2 * * *** (12.0 bits) 0.9 * ****** 0.7 * ****** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel GTGTGGCC consensus C CTA A sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGYKRCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:176203-176323 12 8.16e-06 TTAACGTGCA GTGTGGCC CTTTTTAGTT chr2R:9810769-9810889 87 8.16e-06 AGTAAATTCA GTGTGGCC AGATTACAGT chr3L:2244147-2244267 89 8.16e-06 GAACTGTGCA GTGTGGCC GTATTTTTTG chr2L:22261157-22261277 101 8.16e-06 gccgcccata gtgtggcc gcgtgttgag chrX:11579006-11579126 7 8.16e-06 TCATTA GTGTGGCC AAAACTCGAA chr2L:20115971-20116091 91 8.16e-06 GCCTATATTA GTGTGGCC AGCCTGCTTG chr2L:20294051-20294171 55 1.33e-05 CAGTCTTTTT GTGCGGCC ATTTCGTGTA chr3L:692885-693005 79 2.62e-05 TTTCGAGTCA GCGTTGCC ATACTCATGT chrX:11483425-11483545 58 2.62e-05 CTAACATGCA GCGTTGCC CCATCCCATC chr3L:5749748-5749868 82 2.62e-05 GCCAGGTGGC GTGTTGCC CTCTGGAAGT chr3L:14671691-14671811 12 2.62e-05 CTGTTATATG GCGTTGCC AGAATTGAAA chr4:1084818-1084938 27 2.62e-05 CAATATTTCA GCGTTGCC ATATTTGCAC chr4:835847-835967 68 2.62e-05 AGGACGATTG GCGTTGCC ATCCCAAAAT chr2R:24313227-24313347 6 2.62e-05 AATTA GCGTTGCC AGAACGAACA chr2L:5365970-5366090 68 3.43e-05 CGTTACTCGC GTGCTGCC AGATTATCAA chr3R:28345420-28345540 44 3.43e-05 CAATCTCTTA GTGCTGCC CATACAAAAT chr3L:24205341-24205461 62 3.43e-05 GTTTCATGCA GTGCTGCC ACCTGTGCTA chrX:17422128-17422248 80 3.43e-05 AAAGCACATA GCGCTGCC AGATGAGGAA chr3R:30946426-30946546 80 3.43e-05 AGGACACTGA GTGCTGCC ATTCTGATTC chr2L:1006620-1006740 75 3.43e-05 GGGAAGTGGA GCGCTGCC ATCTTAACCA chr3L:24231474-24231594 103 3.43e-05 GTTTCCTGCA GTGCTGCC ACCTGTGCTA chr2R:1151209-1151329 106 3.43e-05 gctacgtcaa gcgctgcc atcgatg chr3R:16656208-16656328 23 3.43e-05 TTTGACGCTA GTGCTGCC AGATCTTCGA chr2R:8420710-8420830 57 5.54e-05 AGACATAATA GTGTGACC TTAATTCTGT chrX:8142238-8142358 27 5.54e-05 CCCAACAATA GTGTGACC GACTGTGTAG chr2R:15538008-15538128 89 5.54e-05 GTGCGAGAAA GTGTGACC TGCTTATGTA chr2R:23746889-23747009 74 5.54e-05 CTGTTAAGCA GTGTGACC GTTTCGTTTC chrY:3245825-3245945 104 5.54e-05 ctttacattg gtgtgacc aagctgact chr2L:18868-18988 51 5.54e-05 TTTGTGGGCA GTGTGACC ATGTCCAATC chr3L:21131524-21131644 91 5.54e-05 AAGGACTTTA GTGTGACC CTATACAAAC chr3R:15485955-15486075 60 5.54e-05 TCCTTCATCA GTGTGACC GCTTTTAGTA chr3R:864600-864720 32 5.54e-05 ctttacattg gtgtgacc aagctgactg chr2L:16738368-16738488 15 5.54e-05 GCTATCAGCA GTGTGACC GTCTTGATGT chr3L:23279175-23279295 76 5.54e-05 taaagtgtga gcgtgacc gtttcaggcg chr2L:21713-21833 31 5.54e-05 TTTGTGGGCA GTGTGACC ATGTCCAATC chr3L:1188925-1189045 110 6.36e-05 ATGTATGGAT GTGCGACC TGG chr4:68697-68817 30 7.15e-05 TACATATCAT GAGTTGCC ACCTGGCAAC chr3R:28545113-28545233 72 7.15e-05 TAAATGACCA GAGTTGCC ATACTAACTA chr3R:8316503-8316623 49 7.15e-05 GGCAGACAAA GAGTTGCC GGATAGATGA chr2R:23357394-23357514 42 7.65e-05 CTAATGCGCA GAGCTGCC AGATATTCTC chr3L:27358873-27358993 97 1.23e-04 AGTAACAACA GCGTGGCA CAGCCTGGCC chr3R:23159452-23159572 26 1.23e-04 ACGCTAGATG GCGCTACC GATGGTGCAA chrX:14954021-14954141 23 1.23e-04 TTGCACATGT GCGCTACC TGTTGGTCAA chr3L:23580713-23580833 11 1.23e-04 TATAGATCTT GTGTGGCA CCATTGTATT chrX:19326901-19327021 28 1.31e-04 CTTTCGAAAA GCGCGGCA TACAGAACGC chr3R:4479722-4479842 10 1.39e-04 TTCCGGAAA GAGTGACC GAATTTCGAG chr3R:2858634-2858754 87 1.39e-04 GCACCCGCCA GAGTGACC TAGGTTGACT chr2R:9972810-9972930 87 1.64e-04 ATTTGAGAAA GTGTTGCA TACTTTTGAG chrX:18830463-18830583 73 1.77e-04 TTCAGCTTTC GCGCTGCA GTCACACTTT chr2R:1243469-1243589 112 1.77e-04 tatgaaataa gtgctgca t chr3L:8891288-8891408 27 2.11e-04 GAAGAAGTCA GAGTGGCA GCTCCGGACA chr2R:4324885-4325005 78 2.11e-04 TAAATTCATC GAGTGGCA ACGCCGCACT chr3L:21773995-21774115 69 2.11e-04 TATTCCAAGA GAGCTACC AGATCAGGTA chr2L:6566160-6566280 33 2.16e-04 ACCAGGTAGC GAGCGGCA AAATATACCG chr3L:23015841-23015961 9 2.41e-04 TGCCTAGC GCGTGACA ATCATGTTCC chr3L:7510534-7510654 7 2.57e-04 TTTTTA GGGCTGCC AGACAAGAAA chr3R:11437628-11437748 75 2.57e-04 AATACAGACG GCGCGACA TCGATACATA chr3L:9630008-9630128 45 2.70e-04 TGTCTACTGC GAGTTGCA GGTGTTTTGC chr2L:5724020-5724140 7 2.78e-04 GGGTCC GAGCTGCA TGCTCCATGA chr2R:18446493-18446613 9 3.30e-04 TATAGATG GCGCTACA TTTGCCATTG chr2L:11989824-11989944 48 3.35e-04 AATAATCTTG GGGTGACC ATTATAAAAT chr3R:5733292-5733412 64 4.00e-04 GCAGAGCTTT GAGTTACA ATATACTGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGYKRCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:176203-176323 8.2e-06 11_[+1]_101 chr2R:9810769-9810889 8.2e-06 86_[+1]_26 chr3L:2244147-2244267 8.2e-06 88_[+1]_24 chr2L:22261157-22261277 8.2e-06 100_[+1]_12 chrX:11579006-11579126 8.2e-06 6_[+1]_106 chr2L:20115971-20116091 8.2e-06 90_[+1]_22 chr2L:20294051-20294171 1.3e-05 54_[+1]_58 chr3L:692885-693005 2.6e-05 78_[+1]_34 chrX:11483425-11483545 2.6e-05 57_[+1]_55 chr3L:5749748-5749868 2.6e-05 81_[+1]_31 chr3L:14671691-14671811 2.6e-05 11_[+1]_101 chr4:1084818-1084938 2.6e-05 26_[+1]_86 chr4:835847-835967 2.6e-05 67_[+1]_45 chr2R:24313227-24313347 2.6e-05 5_[+1]_107 chr2L:5365970-5366090 3.4e-05 67_[+1]_45 chr3R:28345420-28345540 3.4e-05 43_[+1]_69 chr3L:24205341-24205461 3.4e-05 61_[+1]_51 chrX:17422128-17422248 3.4e-05 79_[+1]_33 chr3R:30946426-30946546 3.4e-05 79_[+1]_33 chr2L:1006620-1006740 3.4e-05 74_[+1]_38 chr3L:24231474-24231594 3.4e-05 102_[+1]_10 chr2R:1151209-1151329 3.4e-05 105_[+1]_7 chr3R:16656208-16656328 3.4e-05 22_[+1]_90 chr2R:8420710-8420830 5.5e-05 56_[+1]_56 chrX:8142238-8142358 5.5e-05 26_[+1]_86 chr2R:15538008-15538128 5.5e-05 88_[+1]_24 chr2R:23746889-23747009 5.5e-05 73_[+1]_39 chrY:3245825-3245945 5.5e-05 103_[+1]_9 chr2L:18868-18988 5.5e-05 50_[+1]_62 chr3L:21131524-21131644 5.5e-05 90_[+1]_22 chr3R:15485955-15486075 5.5e-05 59_[+1]_53 chr3R:864600-864720 5.5e-05 31_[+1]_81 chr2L:16738368-16738488 5.5e-05 14_[+1]_98 chr3L:23279175-23279295 5.5e-05 75_[+1]_37 chr2L:21713-21833 5.5e-05 30_[+1]_82 chr3L:1188925-1189045 6.4e-05 109_[+1]_3 chr4:68697-68817 7.2e-05 29_[+1]_83 chr3R:28545113-28545233 7.2e-05 71_[+1]_41 chr3R:8316503-8316623 7.2e-05 48_[+1]_64 chr2R:23357394-23357514 7.7e-05 41_[+1]_71 chr3L:27358873-27358993 0.00012 96_[+1]_16 chr3R:23159452-23159572 0.00012 25_[+1]_87 chrX:14954021-14954141 0.00012 22_[+1]_90 chr3L:23580713-23580833 0.00012 10_[+1]_102 chrX:19326901-19327021 0.00013 27_[+1]_85 chr3R:4479722-4479842 0.00014 9_[+1]_103 chr3R:2858634-2858754 0.00014 86_[+1]_26 chr2R:9972810-9972930 0.00016 86_[+1]_26 chrX:18830463-18830583 0.00018 72_[+1]_40 chr2R:1243469-1243589 0.00018 111_[+1]_1 chr3L:8891288-8891408 0.00021 26_[+1]_86 chr2R:4324885-4325005 0.00021 77_[+1]_35 chr3L:21773995-21774115 0.00021 68_[+1]_44 chr2L:6566160-6566280 0.00022 32_[+1]_80 chr3L:23015841-23015961 0.00024 8_[+1]_104 chr3L:7510534-7510654 0.00026 6_[+1]_106 chr3R:11437628-11437748 0.00026 74_[+1]_38 chr3L:9630008-9630128 0.00027 44_[+1]_68 chr2L:5724020-5724140 0.00028 6_[+1]_106 chr2R:18446493-18446613 0.00033 8_[+1]_104 chr2L:11989824-11989944 0.00034 47_[+1]_65 chr3R:5733292-5733412 0.0004 63_[+1]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGYKRCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYGYKRCC width=8 seqs=62 chr3L:176203-176323 ( 12) GTGTGGCC 1 chr2R:9810769-9810889 ( 87) GTGTGGCC 1 chr3L:2244147-2244267 ( 89) GTGTGGCC 1 chr2L:22261157-22261277 ( 101) GTGTGGCC 1 chrX:11579006-11579126 ( 7) GTGTGGCC 1 chr2L:20115971-20116091 ( 91) GTGTGGCC 1 chr2L:20294051-20294171 ( 55) GTGCGGCC 1 chr3L:692885-693005 ( 79) GCGTTGCC 1 chrX:11483425-11483545 ( 58) GCGTTGCC 1 chr3L:5749748-5749868 ( 82) GTGTTGCC 1 chr3L:14671691-14671811 ( 12) GCGTTGCC 1 chr4:1084818-1084938 ( 27) GCGTTGCC 1 chr4:835847-835967 ( 68) GCGTTGCC 1 chr2R:24313227-24313347 ( 6) GCGTTGCC 1 chr2L:5365970-5366090 ( 68) GTGCTGCC 1 chr3R:28345420-28345540 ( 44) GTGCTGCC 1 chr3L:24205341-24205461 ( 62) GTGCTGCC 1 chrX:17422128-17422248 ( 80) GCGCTGCC 1 chr3R:30946426-30946546 ( 80) GTGCTGCC 1 chr2L:1006620-1006740 ( 75) GCGCTGCC 1 chr3L:24231474-24231594 ( 103) GTGCTGCC 1 chr2R:1151209-1151329 ( 106) GCGCTGCC 1 chr3R:16656208-16656328 ( 23) GTGCTGCC 1 chr2R:8420710-8420830 ( 57) GTGTGACC 1 chrX:8142238-8142358 ( 27) GTGTGACC 1 chr2R:15538008-15538128 ( 89) GTGTGACC 1 chr2R:23746889-23747009 ( 74) GTGTGACC 1 chrY:3245825-3245945 ( 104) GTGTGACC 1 chr2L:18868-18988 ( 51) GTGTGACC 1 chr3L:21131524-21131644 ( 91) GTGTGACC 1 chr3R:15485955-15486075 ( 60) GTGTGACC 1 chr3R:864600-864720 ( 32) GTGTGACC 1 chr2L:16738368-16738488 ( 15) GTGTGACC 1 chr3L:23279175-23279295 ( 76) GCGTGACC 1 chr2L:21713-21833 ( 31) GTGTGACC 1 chr3L:1188925-1189045 ( 110) GTGCGACC 1 chr4:68697-68817 ( 30) GAGTTGCC 1 chr3R:28545113-28545233 ( 72) GAGTTGCC 1 chr3R:8316503-8316623 ( 49) GAGTTGCC 1 chr2R:23357394-23357514 ( 42) GAGCTGCC 1 chr3L:27358873-27358993 ( 97) GCGTGGCA 1 chr3R:23159452-23159572 ( 26) GCGCTACC 1 chrX:14954021-14954141 ( 23) GCGCTACC 1 chr3L:23580713-23580833 ( 11) GTGTGGCA 1 chrX:19326901-19327021 ( 28) GCGCGGCA 1 chr3R:4479722-4479842 ( 10) GAGTGACC 1 chr3R:2858634-2858754 ( 87) GAGTGACC 1 chr2R:9972810-9972930 ( 87) GTGTTGCA 1 chrX:18830463-18830583 ( 73) GCGCTGCA 1 chr2R:1243469-1243589 ( 112) GTGCTGCA 1 chr3L:8891288-8891408 ( 27) GAGTGGCA 1 chr2R:4324885-4325005 ( 78) GAGTGGCA 1 chr3L:21773995-21774115 ( 69) GAGCTACC 1 chr2L:6566160-6566280 ( 33) GAGCGGCA 1 chr3L:23015841-23015961 ( 9) GCGTGACA 1 chr3L:7510534-7510654 ( 7) GGGCTGCC 1 chr3R:11437628-11437748 ( 75) GCGCGACA 1 chr3L:9630008-9630128 ( 45) GAGTTGCA 1 chr2L:5724020-5724140 ( 7) GAGCTGCA 1 chr2R:18446493-18446613 ( 9) GCGCTACA 1 chr2L:11989824-11989944 ( 48) GGGTGACC 1 chr3R:5733292-5733412 ( 64) GAGTTACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGYKRCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5523 E= 9.0e-018 -1260 -1260 237 -1260 -55 58 -258 61 -1260 -1260 237 -1260 -1260 94 -1260 104 -1260 -1260 137 71 27 -1260 170 -1260 -1260 237 -1260 -1260 -34 197 -1260 -1260 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGYKRCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 9.0e-018 0.000000 0.000000 1.000000 0.000000 0.209677 0.290323 0.032258 0.467742 0.000000 0.000000 1.000000 0.000000 0.000000 0.370968 0.000000 0.629032 0.000000 0.000000 0.500000 0.500000 0.370968 0.000000 0.629032 0.000000 0.000000 1.000000 0.000000 0.000000 0.241935 0.758065 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGYKRCC MEME-1 regular expression -------------------------------------------------------------------------------- G[TCA]G[TC][GT][GA]C[CA] -------------------------------------------------------------------------------- Time 7.45 secs. ******************************************************************************** ******************************************************************************** MOTIF GGYMACAC MEME-2 width = 8 sites = 33 llr = 304 E-value = 5.3e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGYMACAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::48:8: pos.-specific C 1:56:a:a probability G 9a1:2::: matrix T ::4:::2: bits 2.4 * * * 2.1 ** * * 1.9 ** * * 1.7 ** * * Relative 1.4 ** * * Entropy 1.2 ** ***** (13.3 bits) 0.9 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCCACAC consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYMACAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:22749287-22749407 111 5.02e-06 GCCCAATCGT GGCCACAC TA chr2L:20148473-20148593 46 5.02e-06 CAAGCTGGCT GGCCACAC TAATACAGGC chr3L:24293444-24293564 63 5.02e-06 TTTTCGATAT GGCCACAC TGATCCATGG chr4:979949-980069 68 1.30e-05 AGTGCGTAAT GGCAACAC CCAATATGTG chr3R:15485955-15486075 33 1.30e-05 TCCAAAGTGT GGCAACAC CAGCAAGTTT chr3L:20800296-20800416 98 1.30e-05 CCAACGATCT GGCAACAC CGTCTGCCAT chr2L:21559785-21559905 70 1.30e-05 TTAAAAACTA GGCAACAC TAATATCGAT chr2L:11989824-11989944 98 2.09e-05 AGTAGCTACC GGTCACAC TGTTGCTCAG chr2L:20066258-20066378 110 2.09e-05 GCTTGCAAGC GGTCACAC AGT chr3L:17465864-17465984 77 2.09e-05 ATAACTAACT GGTCACAC TAAAGCGGCA chr3L:20495266-20495386 108 2.09e-05 GCTACGCCAC GGTCACAC TGTCG chr2R:4324885-4325005 49 2.09e-05 CAATATTAGG GGTCACAC TTCAAAAATA chr3L:27980050-27980170 30 2.09e-05 GTTAAGAGAG GGTCACAC TGACCAAAAA chrX:11579006-11579126 70 2.09e-05 TTCGCGGCCT GGTCACAC TAAGCTAGGG chr2L:20104599-20104719 100 2.09e-05 CGAGATATGC GGTCACAC CAGGCCAAGC chr2R:22911796-22911916 113 2.41e-05 CCGAGCTTAG GGCCGCAC chrX:1289087-1289207 39 3.66e-05 TGTACCAGCT GGTAACAC TTCCTAATCA chr2R:4544677-4544797 87 3.66e-05 cactgccacg ggtaacac acaatttgaa chrX:11483425-11483545 107 4.66e-05 TTGGCCATCT GGCAGCAC TGGTCA chr3L:12861652-12861772 20 4.66e-05 TCACGAGGGT GGCAGCAC CGTCGTCATT chr3L:23580713-23580833 39 4.66e-05 GATTTTGTTT GGCAGCAC TGTTGCGATC chr3R:2411937-2412057 36 4.66e-05 cgACCGGTCT GGCAgcac tgcaccgtcc chr2R:23357394-23357514 25 5.67e-05 GTATAGAAAC GGGCACAC TAATGCGCAG chr3L:14671691-14671811 79 5.67e-05 GAACGCTAGA GGTCGCAC ATGTGCCAAT chr2L:14288005-14288125 89 5.67e-05 CTCAAAGCCG GGGCACAC ACCAGCCAAG chr2R:5085894-5086014 38 5.67e-05 AAAGTACGTC GGGCACAC TAATGTGGCC chr4:68697-68817 42 6.46e-05 GTTGCCACCT GGCAACTC CCACATCACG chr2R:17098563-17098683 22 6.46e-05 TTAACATTCT GGCAACTC TTTGCATGGT chr3L:20541698-20541818 56 6.46e-05 TGTCTGATCT GGCAACTC TGAGCATGGC chr3L:23015841-23015961 53 6.46e-05 GCGACCTTCT GGCAACTC TACTCGGCCT chr3L:692885-693005 58 8.84e-05 TTTAAGTCGT GGTCACTC TGATTTCGAG chr3L:9630008-9630128 69 9.66e-05 TTGCCGTTAT CGCCACAC AGTCACACTG chr2L:20294051-20294171 33 9.66e-05 TATTTTGTGG CGCCACAC AATCCAGTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYMACAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:22749287-22749407 5e-06 110_[+2]_2 chr2L:20148473-20148593 5e-06 45_[+2]_67 chr3L:24293444-24293564 5e-06 62_[+2]_50 chr4:979949-980069 1.3e-05 67_[+2]_45 chr3R:15485955-15486075 1.3e-05 32_[+2]_80 chr3L:20800296-20800416 1.3e-05 97_[+2]_15 chr2L:21559785-21559905 1.3e-05 69_[+2]_43 chr2L:11989824-11989944 2.1e-05 97_[+2]_15 chr2L:20066258-20066378 2.1e-05 109_[+2]_3 chr3L:17465864-17465984 2.1e-05 76_[+2]_36 chr3L:20495266-20495386 2.1e-05 107_[+2]_5 chr2R:4324885-4325005 2.1e-05 48_[+2]_64 chr3L:27980050-27980170 2.1e-05 29_[+2]_83 chrX:11579006-11579126 2.1e-05 69_[+2]_43 chr2L:20104599-20104719 2.1e-05 99_[+2]_13 chr2R:22911796-22911916 2.4e-05 112_[+2] chrX:1289087-1289207 3.7e-05 38_[+2]_74 chr2R:4544677-4544797 3.7e-05 86_[+2]_26 chrX:11483425-11483545 4.7e-05 106_[+2]_6 chr3L:12861652-12861772 4.7e-05 19_[+2]_93 chr3L:23580713-23580833 4.7e-05 38_[+2]_74 chr3R:2411937-2412057 4.7e-05 35_[+2]_77 chr2R:23357394-23357514 5.7e-05 24_[+2]_88 chr3L:14671691-14671811 5.7e-05 78_[+2]_34 chr2L:14288005-14288125 5.7e-05 88_[+2]_24 chr2R:5085894-5086014 5.7e-05 37_[+2]_75 chr4:68697-68817 6.5e-05 41_[+2]_71 chr2R:17098563-17098683 6.5e-05 21_[+2]_91 chr3L:20541698-20541818 6.5e-05 55_[+2]_57 chr3L:23015841-23015961 6.5e-05 52_[+2]_60 chr3L:692885-693005 8.8e-05 57_[+2]_55 chr3L:9630008-9630128 9.7e-05 68_[+2]_44 chr2L:20294051-20294171 9.7e-05 32_[+2]_80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYMACAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGYMACAC width=8 seqs=33 chr3L:22749287-22749407 ( 111) GGCCACAC 1 chr2L:20148473-20148593 ( 46) GGCCACAC 1 chr3L:24293444-24293564 ( 63) GGCCACAC 1 chr4:979949-980069 ( 68) GGCAACAC 1 chr3R:15485955-15486075 ( 33) GGCAACAC 1 chr3L:20800296-20800416 ( 98) GGCAACAC 1 chr2L:21559785-21559905 ( 70) GGCAACAC 1 chr2L:11989824-11989944 ( 98) GGTCACAC 1 chr2L:20066258-20066378 ( 110) GGTCACAC 1 chr3L:17465864-17465984 ( 77) GGTCACAC 1 chr3L:20495266-20495386 ( 108) GGTCACAC 1 chr2R:4324885-4325005 ( 49) GGTCACAC 1 chr3L:27980050-27980170 ( 30) GGTCACAC 1 chrX:11579006-11579126 ( 70) GGTCACAC 1 chr2L:20104599-20104719 ( 100) GGTCACAC 1 chr2R:22911796-22911916 ( 113) GGCCGCAC 1 chrX:1289087-1289207 ( 39) GGTAACAC 1 chr2R:4544677-4544797 ( 87) GGTAACAC 1 chrX:11483425-11483545 ( 107) GGCAGCAC 1 chr3L:12861652-12861772 ( 20) GGCAGCAC 1 chr3L:23580713-23580833 ( 39) GGCAGCAC 1 chr3R:2411937-2412057 ( 36) GGCAGCAC 1 chr2R:23357394-23357514 ( 25) GGGCACAC 1 chr3L:14671691-14671811 ( 79) GGTCGCAC 1 chr2L:14288005-14288125 ( 89) GGGCACAC 1 chr2R:5085894-5086014 ( 38) GGGCACAC 1 chr4:68697-68817 ( 42) GGCAACTC 1 chr2R:17098563-17098683 ( 22) GGCAACTC 1 chr3L:20541698-20541818 ( 56) GGCAACTC 1 chr3L:23015841-23015961 ( 53) GGCAACTC 1 chr3L:692885-693005 ( 58) GGTCACTC 1 chr3L:9630008-9630128 ( 69) CGCCACAC 1 chr2L:20294051-20294171 ( 33) CGCCACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYMACAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0849 E= 5.3e-007 -1169 -168 228 -1169 -1169 -1169 237 -1169 -1169 149 -109 25 47 157 -1169 -1169 142 -1169 -9 -1169 -1169 237 -1169 -1169 147 -1169 -1169 -101 -1169 237 -1169 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYMACAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 5.3e-007 0.000000 0.060606 0.939394 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.545455 0.090909 0.363636 0.424242 0.575758 0.000000 0.000000 0.818182 0.000000 0.181818 0.000000 0.000000 1.000000 0.000000 0.000000 0.848485 0.000000 0.000000 0.151515 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYMACAC MEME-2 regular expression -------------------------------------------------------------------------------- GG[CT][CA]ACAC -------------------------------------------------------------------------------- Time 13.66 secs. ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-3 width = 8 sites = 37 llr = 325 E-value = 3.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1a:::a29 pos.-specific C 3::a:::: probability G 1:::a::: matrix T 6:a:::81 bits 2.4 ** 2.1 ** 1.9 ** 1.7 ***** Relative 1.4 ***** Entropy 1.2 ******* (12.7 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:63442-63562 26 3.12e-05 TTATAAGAAG TATCGATA GGTGTGTAGG chr2R:7735940-7736060 77 3.12e-05 TTTTACATAG TATCGATA TGTATAATAA chr3L:327929-328049 104 3.12e-05 GAAGAATAGG TATCGATA ATCTCTACA chr3R:4479722-4479842 39 3.12e-05 ATTCGGTACT TATCGATA TTATCGGAAC chr3L:24205341-24205461 44 3.12e-05 CTCCTGATCC TATCGATA GTTTCATGCA chr3L:15816893-15817013 42 3.12e-05 CTCTGCATTG TATCGATA AATTAAACAT chr2R:4701405-4701525 8 3.12e-05 tctagga tatcgata gatgttgggg chr4:1084818-1084938 88 3.12e-05 ATATCGATGC TATCGATA TATGCTTCCT chr3L:24293444-24293564 14 3.12e-05 TCGATATTCT TATCGATA CGGCAACGCT chr3L:24196245-24196365 41 3.12e-05 CGTGTGTGGT TATCGATA ACTTAAGATT chr3L:23279175-23279295 20 3.12e-05 ttttctggga tatcgata gatatcgggg chr3L:24231474-24231594 85 3.12e-05 CTCCTGATCC TATCGATA GTTTCCTGCA chr2R:2856793-2856913 112 3.12e-05 TAGTTCGATA TATCGATA A chr3L:23015841-23015961 98 3.12e-05 CTGGCTCTCT TATCGATA AGTCTAAGTT chr3R:3734094-3734214 100 3.12e-05 CTCCTCATCC TATCGATA GTTTCTGCAG chr2R:4730331-4730451 82 3.12e-05 TCGATGGAAC TATCGATA CTATCGATGG chr2L:21559785-21559905 81 3.12e-05 GCAACACTAA TATCGATA GAATTCTCTG chrX:127360-127480 43 5.10e-05 TTCGAGCACA CATCGATA CTGGCGATAG chr2R:5339278-5339398 58 5.10e-05 ATCCTAAAAT CATCGATA GTCTAAATTA chr3L:24536052-24536172 43 5.10e-05 CTTAAAAAAC CATCGATA GTGCCGACCA chr2L:22261157-22261277 28 5.10e-05 atgatcgtgt catcgata tcggtgagcg chrX:4931186-4931306 58 5.10e-05 CGATGCCAAA CATCGATA TTTTCAAAAA chrX:4936207-4936327 8 5.10e-05 TGCCAAA CATCGATA TTTTCAAAAA chr2L:22121037-22121157 26 8.23e-05 ATTTAGGATA TATCGAAA AGAATGAATA chr2L:22239762-22239882 43 8.23e-05 TATCGAGAAT TATCGAAA AATGACTTCG chr3R:3118106-3118226 69 8.23e-05 ataattcggt tatcgaaa aagtatggtt chr2R:4013989-4014109 102 1.53e-04 AGTTTTACAT TATCGATT GCGGCTGTTA chr2R:4324885-4325005 1 1.53e-04 . GATCGATA GGATCGGCCA chr3R:3843096-3843216 2 1.53e-04 a catcgaaa gatgcaaccc chr3R:4905935-4906055 105 1.53e-04 TCGCTAAATA CATCGAAA ATCGCATG chr2L:21558346-21558466 34 1.53e-04 CATCGGGATA TATCGATT GTTATTCCGA chr3R:864600-864720 59 1.53e-04 gcaagcccac tatcgatt attcatcgag chr2R:2565402-2565522 54 1.53e-04 GAATATGGAA CATCGAAA AAAGAATCGA chr3R:16656208-16656328 73 1.53e-04 ATCTTTTTCA GATCGATA TTCATTTCCA chrX:18830463-18830583 113 2.04e-04 ACTTGCGGTC AATCGATA chr3R:11437628-11437748 106 2.04e-04 CGACATCATA CATCGATT GCAGAAT chr2R:4272504-4272624 63 2.04e-04 ctcgataaat aatcgata gggggcttac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:63442-63562 3.1e-05 25_[+3]_87 chr2R:7735940-7736060 3.1e-05 76_[+3]_36 chr3L:327929-328049 3.1e-05 103_[+3]_9 chr3R:4479722-4479842 3.1e-05 38_[+3]_74 chr3L:24205341-24205461 3.1e-05 43_[+3]_69 chr3L:15816893-15817013 3.1e-05 41_[+3]_71 chr2R:4701405-4701525 3.1e-05 7_[+3]_105 chr4:1084818-1084938 3.1e-05 87_[+3]_25 chr3L:24293444-24293564 3.1e-05 13_[+3]_99 chr3L:24196245-24196365 3.1e-05 40_[+3]_72 chr3L:23279175-23279295 3.1e-05 19_[+3]_93 chr3L:24231474-24231594 3.1e-05 84_[+3]_28 chr2R:2856793-2856913 3.1e-05 111_[+3]_1 chr3L:23015841-23015961 3.1e-05 97_[+3]_15 chr3R:3734094-3734214 3.1e-05 99_[+3]_13 chr2R:4730331-4730451 3.1e-05 81_[+3]_31 chr2L:21559785-21559905 3.1e-05 80_[+3]_32 chrX:127360-127480 5.1e-05 42_[+3]_70 chr2R:5339278-5339398 5.1e-05 57_[+3]_55 chr3L:24536052-24536172 5.1e-05 42_[+3]_70 chr2L:22261157-22261277 5.1e-05 27_[+3]_85 chrX:4931186-4931306 5.1e-05 57_[+3]_55 chrX:4936207-4936327 5.1e-05 7_[+3]_105 chr2L:22121037-22121157 8.2e-05 25_[+3]_87 chr2L:22239762-22239882 8.2e-05 42_[+3]_70 chr3R:3118106-3118226 8.2e-05 68_[+3]_44 chr2R:4013989-4014109 0.00015 101_[+3]_11 chr2R:4324885-4325005 0.00015 [+3]_112 chr3R:3843096-3843216 0.00015 1_[+3]_111 chr3R:4905935-4906055 0.00015 104_[+3]_8 chr2L:21558346-21558466 0.00015 33_[+3]_79 chr3R:864600-864720 0.00015 58_[+3]_54 chr2R:2565402-2565522 0.00015 53_[+3]_59 chr3R:16656208-16656328 0.00015 72_[+3]_40 chrX:18830463-18830583 0.0002 112_[+3] chr3R:11437628-11437748 0.0002 105_[+3]_7 chr2R:4272504-4272624 0.0002 62_[+3]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=37 chr4:63442-63562 ( 26) TATCGATA 1 chr2R:7735940-7736060 ( 77) TATCGATA 1 chr3L:327929-328049 ( 104) TATCGATA 1 chr3R:4479722-4479842 ( 39) TATCGATA 1 chr3L:24205341-24205461 ( 44) TATCGATA 1 chr3L:15816893-15817013 ( 42) TATCGATA 1 chr2R:4701405-4701525 ( 8) TATCGATA 1 chr4:1084818-1084938 ( 88) TATCGATA 1 chr3L:24293444-24293564 ( 14) TATCGATA 1 chr3L:24196245-24196365 ( 41) TATCGATA 1 chr3L:23279175-23279295 ( 20) TATCGATA 1 chr3L:24231474-24231594 ( 85) TATCGATA 1 chr2R:2856793-2856913 ( 112) TATCGATA 1 chr3L:23015841-23015961 ( 98) TATCGATA 1 chr3R:3734094-3734214 ( 100) TATCGATA 1 chr2R:4730331-4730451 ( 82) TATCGATA 1 chr2L:21559785-21559905 ( 81) TATCGATA 1 chrX:127360-127480 ( 43) CATCGATA 1 chr2R:5339278-5339398 ( 58) CATCGATA 1 chr3L:24536052-24536172 ( 43) CATCGATA 1 chr2L:22261157-22261277 ( 28) CATCGATA 1 chrX:4931186-4931306 ( 58) CATCGATA 1 chrX:4936207-4936327 ( 8) CATCGATA 1 chr2L:22121037-22121157 ( 26) TATCGAAA 1 chr2L:22239762-22239882 ( 43) TATCGAAA 1 chr3R:3118106-3118226 ( 69) TATCGAAA 1 chr2R:4013989-4014109 ( 102) TATCGATT 1 chr2R:4324885-4325005 ( 1) GATCGATA 1 chr3R:3843096-3843216 ( 2) CATCGAAA 1 chr3R:4905935-4906055 ( 105) CATCGAAA 1 chr2L:21558346-21558466 ( 34) TATCGATT 1 chr3R:864600-864720 ( 59) TATCGATT 1 chr2R:2565402-2565522 ( 54) CATCGAAA 1 chr3R:16656208-16656328 ( 73) GATCGATA 1 chrX:18830463-18830583 ( 113) AATCGATA 1 chr3R:11437628-11437748 ( 106) CATCGATT 1 chr2R:4272504-4272624 ( 63) AATCGATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4486 E= 3.3e-003 -250 48 -184 102 171 -1185 -1185 -1185 -1185 -1185 -1185 171 -1185 237 -1185 -1185 -1185 -1185 237 -1185 171 -1185 -1185 -1185 -92 -1185 -1185 145 154 -1185 -1185 -150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 3.3e-003 0.054054 0.270270 0.054054 0.621622 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.162162 0.000000 0.000000 0.837838 0.891892 0.000000 0.000000 0.108108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 regular expression -------------------------------------------------------------------------------- [TC]ATCGATA -------------------------------------------------------------------------------- Time 19.83 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTGGCGS MEME-4 width = 8 sites = 22 llr = 206 E-value = 7.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTGGCGS MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1:::21: pos.-specific C :::::6:6 probability G a9:aa:74 matrix T ::a::12: bits 2.4 * ** 2.1 * ** 1.9 ** ** 1.7 ** ** Relative 1.4 ***** * Entropy 1.2 ***** * (13.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTGGCGC consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3343864-3343984 69 3.16e-06 TTCAGCGATA GGTGGCGC TTTATGCATG chrX:14954021-14954141 66 3.16e-06 ACAACATCCA GGTGGCGC TGTTTTTGTT chr2R:15245039-15245159 63 3.16e-06 TTTTACATTT GGTGGCGC CATCTAGGTT chr2R:9810769-9810889 50 3.16e-06 CCCACATGTA GGTGGCGC TATTTGCGCT chr3R:28345420-28345540 113 6.33e-06 TGAGTCGCTA GGTGGCGG chr3R:10852401-10852521 42 1.13e-05 AATCCACCAC GGTGGAGC GGTGACAACT chrX:23375384-23375504 20 1.13e-05 tctaccaata ggtggagc tttaccacca chr2R:1150932-1151052 78 1.13e-05 actaccaata ggtggagc tctaccacca chr2R:4546578-4546698 70 1.63e-05 GGTATAAGCT GGTGGCTC ATGCTCTTTA chr2R:25283022-25283142 72 2.13e-05 gggtttgcat ggtggagg ctgatgtcaa chr2L:20294051-20294171 111 2.63e-05 ACCAACGACA GGTGGTGC CT chr2L:17603346-17603466 86 3.13e-05 AGACATCGAT GGTGGCTG TCTTGGATGC chr3L:2244147-2244267 9 3.13e-05 CTGCAGCA GGTGGCTG GTCGAAATTT chr3L:1188925-1189045 45 3.63e-05 TTCCACACAT GGTGGTGG AACAGGGAAA chrX:4931186-4931306 32 3.63e-05 ATCGACTAGA GGTGGTGG AGAAACATCG chr3R:8316503-8316623 83 4.13e-05 AATATGATCC GGTGGCAC TGCTGCATTT chr3L:27358873-27358993 8 4.33e-05 CCATGCA GGGGGCGC TAATCTGATG chr2R:1151209-1151329 14 4.65e-05 aggcgaaact ggtggccc tggcctcgaa chr3L:21773995-21774115 2 5.15e-05 T GATGGCGC CAGAATTCAA chr2L:19915358-19915478 70 5.65e-05 TACAAATCAG GGTGGCAG CGCGTGATAT chrX:7678976-7679096 32 6.67e-05 TTTTGAGATA GATGGCGG TTTCAAAAAG chr4:1318973-1319093 99 8.25e-05 atgtgtgtga ggtggatg gaggagaagg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3343864-3343984 3.2e-06 68_[+4]_44 chrX:14954021-14954141 3.2e-06 65_[+4]_47 chr2R:15245039-15245159 3.2e-06 62_[+4]_50 chr2R:9810769-9810889 3.2e-06 49_[+4]_63 chr3R:28345420-28345540 6.3e-06 112_[+4] chr3R:10852401-10852521 1.1e-05 41_[+4]_71 chrX:23375384-23375504 1.1e-05 19_[+4]_93 chr2R:1150932-1151052 1.1e-05 77_[+4]_35 chr2R:4546578-4546698 1.6e-05 69_[+4]_43 chr2R:25283022-25283142 2.1e-05 71_[+4]_41 chr2L:20294051-20294171 2.6e-05 110_[+4]_2 chr2L:17603346-17603466 3.1e-05 85_[+4]_27 chr3L:2244147-2244267 3.1e-05 8_[+4]_104 chr3L:1188925-1189045 3.6e-05 44_[+4]_68 chrX:4931186-4931306 3.6e-05 31_[+4]_81 chr3R:8316503-8316623 4.1e-05 82_[+4]_30 chr3L:27358873-27358993 4.3e-05 7_[+4]_105 chr2R:1151209-1151329 4.6e-05 13_[+4]_99 chr3L:21773995-21774115 5.1e-05 1_[+4]_111 chr2L:19915358-19915478 5.7e-05 69_[+4]_43 chrX:7678976-7679096 6.7e-05 31_[+4]_81 chr4:1318973-1319093 8.2e-05 98_[+4]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTGGCGS width=8 seqs=22 chrX:3343864-3343984 ( 69) GGTGGCGC 1 chrX:14954021-14954141 ( 66) GGTGGCGC 1 chr2R:15245039-15245159 ( 63) GGTGGCGC 1 chr2R:9810769-9810889 ( 50) GGTGGCGC 1 chr3R:28345420-28345540 ( 113) GGTGGCGG 1 chr3R:10852401-10852521 ( 42) GGTGGAGC 1 chrX:23375384-23375504 ( 20) GGTGGAGC 1 chr2R:1150932-1151052 ( 78) GGTGGAGC 1 chr2R:4546578-4546698 ( 70) GGTGGCTC 1 chr2R:25283022-25283142 ( 72) GGTGGAGG 1 chr2L:20294051-20294171 ( 111) GGTGGTGC 1 chr2L:17603346-17603466 ( 86) GGTGGCTG 1 chr3L:2244147-2244267 ( 9) GGTGGCTG 1 chr3L:1188925-1189045 ( 45) GGTGGTGG 1 chrX:4931186-4931306 ( 32) GGTGGTGG 1 chr3R:8316503-8316623 ( 83) GGTGGCAC 1 chr3L:27358873-27358993 ( 8) GGGGGCGC 1 chr2R:1151209-1151329 ( 14) GGTGGCCC 1 chr3L:21773995-21774115 ( 2) GATGGCGC 1 chr2L:19915358-19915478 ( 70) GGTGGCAG 1 chrX:7678976-7679096 ( 32) GATGGCGG 1 chr4:1318973-1319093 ( 99) GGTGGATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2007 E= 7.5e+001 -1110 -1110 237 -1110 -175 -1110 223 -1110 -1110 -1110 -209 164 -1110 -1110 237 -1110 -1110 -1110 237 -1110 -43 171 -1110 -116 -175 -209 182 -75 -1110 161 108 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 7.5e+001 0.000000 0.000000 1.000000 0.000000 0.090909 0.000000 0.909091 0.000000 0.000000 0.000000 0.045455 0.954545 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.227273 0.636364 0.000000 0.136364 0.090909 0.045455 0.681818 0.181818 0.000000 0.590909 0.409091 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGS MEME-4 regular expression -------------------------------------------------------------------------------- GGTGG[CA]G[CG] -------------------------------------------------------------------------------- Time 25.89 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCCATC MEME-5 width = 8 sites = 11 llr = 115 E-value = 1.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCCATC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1::::a2: pos.-specific C 9::8a::a probability G ::a2:::: matrix T :a::::8: bits 2.4 * * * 2.1 * * * 1.9 * * * * 1.7 ****** * Relative 1.4 ****** * Entropy 1.2 ****** * (15.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGCCATC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCATC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:21104477-21104597 57 7.90e-06 ATCGGAGCGA CTGCCATC CCTGGCGGAT chr3L:24205341-24205461 85 7.90e-06 TGCTATCGCG CTGCCATC ACTATCATTA chr3R:8316503-8316623 23 7.90e-06 TGTCAAAGGG CTGCCATC CGGGTAAAGG chr3R:30946426-30946546 52 7.90e-06 ATATCGGATG CTGCCATC CTAATTTATA chr2L:1006620-1006740 47 7.90e-06 ATGTTAGGAG CTGCCATC CTGATGTCTG chr2L:22261157-22261277 72 7.90e-06 cattccgacg ctgccatc ttgtgtcgat chr3L:692885-693005 105 1.58e-05 GTAAAAAACA CTGCCAAC TTCAAGGA chr2R:20640871-20640991 66 1.58e-05 TTTTGTCTAT CTGCCAAC TCTATGCAAT chr3L:1738463-1738583 70 2.37e-05 ATCGTCCAGT CTGGCATC GCCTGAGCAG chr2R:5240184-5240304 9 2.37e-05 CCTCCGAT CTGGCATC TCCGGCAGCG chr2R:4013989-4014109 6 3.62e-05 TCCAT ATGCCATC GTCGCTAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCATC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:21104477-21104597 7.9e-06 56_[+5]_56 chr3L:24205341-24205461 7.9e-06 84_[+5]_28 chr3R:8316503-8316623 7.9e-06 22_[+5]_90 chr3R:30946426-30946546 7.9e-06 51_[+5]_61 chr2L:1006620-1006740 7.9e-06 46_[+5]_66 chr2L:22261157-22261277 7.9e-06 71_[+5]_41 chr3L:692885-693005 1.6e-05 104_[+5]_8 chr2R:20640871-20640991 1.6e-05 65_[+5]_47 chr3L:1738463-1738583 2.4e-05 69_[+5]_43 chr2R:5240184-5240304 2.4e-05 8_[+5]_104 chr2R:4013989-4014109 3.6e-05 5_[+5]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCATC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCCATC width=8 seqs=11 chr2L:21104477-21104597 ( 57) CTGCCATC 1 chr3L:24205341-24205461 ( 85) CTGCCATC 1 chr3R:8316503-8316623 ( 23) CTGCCATC 1 chr3R:30946426-30946546 ( 52) CTGCCATC 1 chr2L:1006620-1006740 ( 47) CTGCCATC 1 chr2L:22261157-22261277 ( 72) CTGCCATC 1 chr3L:692885-693005 ( 105) CTGCCAAC 1 chr2R:20640871-20640991 ( 66) CTGCCAAC 1 chr3L:1738463-1738583 ( 70) CTGGCATC 1 chr2R:5240184-5240304 ( 9) CTGGCATC 1 chr2R:4013989-4014109 ( 6) ATGCCATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCATC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6812 E= 1.7e+004 -175 223 -1010 -1010 -1010 -1010 -1010 171 -1010 -1010 237 -1010 -1010 208 -9 -1010 -1010 237 -1010 -1010 170 -1010 -1010 -1010 -75 -1010 -1010 142 -1010 237 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCATC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.7e+004 0.090909 0.909091 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.818182 0.181818 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.181818 0.000000 0.000000 0.818182 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCATC MEME-5 regular expression -------------------------------------------------------------------------------- CTGCCATC -------------------------------------------------------------------------------- Time 31.92 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:2079779-2079899 4.98e-01 120 chr3R:2411937-2412057 2.95e-03 35_[+2(4.66e-05)]_77 chr2R:24313227-24313347 1.09e-01 5_[+1(2.62e-05)]_107 chr2L:20104599-20104719 8.27e-02 37_[+2(8.84e-05)]_17_[+2(5.67e-05)]_\ 29_[+2(2.09e-05)]_13 chr2L:20115971-20116091 9.25e-03 90_[+1(8.16e-06)]_22 chr3R:3118106-3118226 7.67e-02 68_[+3(8.23e-05)]_44 chr2R:1243738-1243858 9.02e-01 120 chrX:4936207-4936327 2.12e-01 7_[+3(5.10e-05)]_105 chr3R:3374275-3374395 7.36e-01 120 chrX:4931186-4931306 2.29e-03 31_[+4(3.63e-05)]_18_[+3(5.10e-05)]_\ 55 chr2L:21559785-21559905 3.98e-03 69_[+2(1.30e-05)]_3_[+3(3.12e-05)]_\ 32 chr2R:4730331-4730451 6.41e-03 81_[+3(3.12e-05)]_31 chr3L:27173156-27173276 7.96e-01 120 chr2L:21713-21833 1.69e-01 30_[+1(5.54e-05)]_82 chr3R:3734094-3734214 3.29e-02 99_[+3(3.12e-05)]_13 chrX:11579006-11579126 6.61e-04 6_[+1(8.16e-06)]_55_[+2(2.09e-05)]_\ 43 chr2R:1150932-1151052 8.45e-03 77_[+4(1.13e-05)]_35 chr3L:23015841-23015961 2.08e-05 50_[+5(4.41e-05)]_39_[+3(3.12e-05)]_\ 15 chr3R:4052955-4053075 1.00e+00 120 chr2L:22261157-22261277 2.57e-06 27_[+3(5.10e-05)]_10_[+1(2.62e-05)]_\ 18_[+5(7.90e-06)]_21_[+1(8.16e-06)]_12 chr3L:21773995-21774115 2.18e-02 1_[+4(5.15e-05)]_111 chr2L:21397385-21397505 4.82e-01 120 chr2R:5085894-5086014 4.55e-02 37_[+2(5.67e-05)]_29_[+2(5.67e-05)]_\ 38 chr3R:16656208-16656328 1.08e-02 22_[+1(3.43e-05)]_90 chr3L:2244147-2244267 2.05e-04 8_[+4(3.13e-05)]_72_[+1(8.16e-06)]_\ 24 chr4:834991-835111 1.41e-01 120 chr2R:2856793-2856913 2.19e-01 111_[+3(3.12e-05)]_1 chr3R:21386236-21386356 1.00e+00 120 chr3L:27422555-27422675 9.58e-01 120 chr4:721902-722022 8.59e-01 120 chr4:1318973-1319093 2.65e-01 98_[+4(8.25e-05)]_14 chr2R:4270726-4270846 2.37e-01 120 chr2R:1514253-1514373 7.31e-01 120 chr2R:1151209-1151329 7.33e-06 13_[+4(4.65e-05)]_87_[+5(7.90e-06)]_\ 4 chr3L:24231474-24231594 3.71e-04 84_[+3(3.12e-05)]_10_[+1(3.43e-05)]_\ 10 chr3L:23279175-23279295 3.22e-03 19_[+3(3.12e-05)]_48_[+1(5.54e-05)]_\ 37 chr4:835847-835967 1.74e-02 67_[+1(2.62e-05)]_45 chr3L:23344868-23344988 1.09e-01 120 chr2R:4192478-4192598 1.82e-01 120 chr3L:24196245-24196365 2.36e-01 40_[+3(3.12e-05)]_72 chr3R:22094093-22094213 8.41e-01 120 chr2R:5240184-5240304 4.79e-03 8_[+5(2.37e-05)]_104 chr2L:6566160-6566280 4.22e-01 120 chr3L:24536052-24536172 4.22e-02 42_[+3(5.10e-05)]_70 chrX:19326901-19327021 2.59e-02 120 chr2R:1243469-1243589 4.83e-01 120 chr3L:27980050-27980170 3.69e-02 29_[+2(2.09e-05)]_17_[+2(5.67e-05)]_\ 58 chr2L:1006620-1006740 4.27e-04 12_[+1(7.65e-05)]_26_[+5(7.90e-06)]_\ 23_[+5(7.90e-06)]_35 chr2R:5537479-5537599 2.14e-01 120 chr3L:23580713-23580833 8.86e-04 38_[+2(4.66e-05)]_74 chr4:796715-796835 2.54e-01 120 chr3L:20541698-20541818 2.82e-03 53_[+5(4.41e-05)]_59 chr2R:8396769-8396889 1.33e-01 120 chr3R:2960545-2960665 6.72e-01 120 chr2R:8665380-8665500 9.78e-01 120 chr3L:13389995-13390115 3.56e-01 120 chr3R:30946426-30946546 6.98e-04 20_[+5(9.17e-05)]_23_[+5(7.90e-06)]_\ 20_[+1(3.43e-05)]_33 chr3L:25675655-25675775 4.86e-02 120 chrX:21358059-21358179 9.92e-01 120 chr2L:23176134-23176254 6.22e-01 120 chr3R:4081878-4081998 8.68e-01 120 chr2R:4595189-4595309 3.50e-01 120 chr2R:4730534-4730654 2.98e-01 120 chr3R:7981505-7981625 4.66e-01 120 chr3L:24293444-24293564 1.57e-04 1_[+3(3.12e-05)]_4_[+3(3.12e-05)]_\ 41_[+2(5.02e-06)]_50 chr3R:12691574-12691694 9.19e-01 120 chr2R:4544677-4544797 1.06e-01 86_[+2(3.66e-05)]_26 chr3L:23258650-23258770 1.83e-01 120 chr2R:4272504-4272624 3.69e-02 120 chr3R:8316503-8316623 1.67e-05 22_[+5(7.90e-06)]_18_[+1(7.15e-05)]_\ 26_[+4(4.13e-05)]_30 chrX:1289087-1289207 3.59e-03 38_[+2(3.66e-05)]_74 chr4:89881-90001 8.05e-01 120 chr3L:710662-710782 6.52e-01 120 chr2R:5693399-5693519 1.63e-01 120 chr2R:2565402-2565522 3.42e-01 120 chr2R:5753362-5753482 1.00e+00 120 chr2L:16738368-16738488 6.27e-02 14_[+1(5.54e-05)]_98 chrX:23375384-23375504 1.23e-02 19_[+4(1.13e-05)]_93 chr3R:864600-864720 1.37e-02 31_[+1(5.54e-05)]_81 chr3R:3789758-3789878 5.93e-01 120 chr2L:21558346-21558466 1.63e-01 120 chr3L:20104034-20104154 5.77e-01 120 chr3R:31458129-31458249 3.60e-01 120 chr3R:4905935-4906055 6.60e-02 120 chr2R:9810769-9810889 5.55e-05 49_[+4(3.16e-06)]_29_[+1(8.16e-06)]_\ 26 chr2L:14589009-14589129 3.98e-01 120 chr3L:28012607-28012727 8.62e-01 120 chr2L:20294051-20294171 4.95e-05 32_[+2(9.66e-05)]_14_[+1(1.33e-05)]_\ 48_[+4(2.63e-05)]_2 chr2R:954185-954305 6.14e-02 120 chr2R:4615357-4615477 9.07e-01 120 chr2R:12201077-12201197 9.62e-01 120 chr3L:20800296-20800416 2.50e-03 97_[+2(1.30e-05)]_15 chr3R:9543581-9543701 6.54e-01 120 chr3R:15485955-15486075 3.03e-05 32_[+2(1.30e-05)]_19_[+1(5.54e-05)]_\ 53 chr3L:9630008-9630128 3.09e-02 68_[+2(9.66e-05)]_44 chr3R:3843096-3843216 6.86e-02 120 chr2R:25285652-25285772 1.87e-01 22_[+4(8.25e-05)]_90 chr2R:5603008-5603128 3.82e-01 120 chr3L:1738463-1738583 4.17e-03 69_[+5(2.37e-05)]_43 chr3L:28091308-28091428 9.93e-01 120 chr2R:18446493-18446613 8.01e-03 4_[+4(5.15e-05)]_108 chr2R:12636214-12636334 2.47e-01 120 chr2R:5339278-5339398 2.67e-01 57_[+3(5.10e-05)]_55 chr2L:22336211-22336331 4.36e-01 120 chr3L:24028391-24028511 8.37e-01 120 chr3L:21131524-21131644 5.02e-02 90_[+1(5.54e-05)]_22 chr4:1084818-1084938 1.77e-03 26_[+1(2.62e-05)]_53_[+3(3.12e-05)]_\ 25 chr2R:5260660-5260780 9.04e-01 120 chr2R:999884-1000004 2.35e-01 120 chr2R:4701405-4701525 7.56e-02 7_[+3(3.12e-05)]_105 chr3L:17339277-17339397 7.06e-01 120 chr2R:13506297-13506417 8.58e-01 120 chr3R:2858634-2858754 1.21e-01 120 chrX:17422128-17422248 1.34e-02 79_[+1(3.43e-05)]_33 chr3R:5733292-5733412 2.48e-01 120 chr2R:7735741-7735861 8.87e-01 120 chr3R:6780181-6780301 7.93e-01 120 chr2R:4728995-4729115 3.97e-01 120 chr3R:16624866-16624986 6.46e-01 120 chrX:7678976-7679096 2.15e-01 31_[+4(6.67e-05)]_81 chr2L:18868-18988 9.52e-02 50_[+1(5.54e-05)]_62 chr3L:15816893-15817013 3.88e-02 41_[+3(3.12e-05)]_11_[+3(3.12e-05)]_\ 52 chr4:993651-993771 6.62e-01 120 chrX:2419624-2419744 3.46e-01 120 chr4:979949-980069 1.66e-03 67_[+2(1.30e-05)]_21_[+5(8.17e-05)]_\ 16 chr3L:24205341-24205461 3.71e-05 43_[+3(3.12e-05)]_10_[+1(3.43e-05)]_\ 15_[+5(7.90e-06)]_28 chr3L:12861652-12861772 2.33e-04 19_[+2(4.66e-05)]_93 chr2R:15245039-15245159 7.57e-03 62_[+4(3.16e-06)]_50 chr2R:5013732-5013852 8.88e-01 120 chr3R:5516725-5516845 5.77e-01 120 chr3R:10852401-10852521 6.50e-03 41_[+4(1.13e-05)]_71 chr2R:4130844-4130964 9.94e-01 120 chr2R:20640871-20640991 2.75e-02 65_[+5(1.58e-05)]_23_[+5(8.17e-05)]_\ 16 chr3L:23714903-23715023 9.76e-01 120 chr3L:23241078-23241198 8.86e-01 120 chrX:2617563-2617683 3.77e-01 83_[+5(5.67e-05)]_29 chr3L:26012603-26012723 1.56e-01 120 chr2L:19915358-19915478 6.82e-03 69_[+4(5.65e-05)]_43 chr2R:8600025-8600145 9.62e-01 120 chr3L:27323340-27323460 1.58e-01 120 chr2R:20603309-20603429 2.60e-01 120 chr2R:12507415-12507535 7.67e-01 120 chr2L:5724020-5724140 1.29e-01 120 chr3R:3622999-3623119 9.28e-01 120 chr3L:18460477-18460597 9.59e-01 120 chr2L:13813716-13813836 3.12e-01 120 chr3L:18745626-18745746 9.86e-01 120 chr2L:22924665-22924785 3.08e-01 120 chr2R:25283022-25283142 1.37e-02 71_[+4(2.13e-05)]_41 chr3R:28345420-28345540 1.31e-03 43_[+1(3.43e-05)]_61_[+4(6.33e-06)] chr2R:22911796-22911916 1.24e-01 112_[+2(2.41e-05)] chr2L:18714217-18714337 9.98e-01 120 chr2R:9291701-9291821 1.13e-01 120 chr2R:1264232-1264352 2.23e-01 120 chr2R:5317010-5317130 4.54e-01 120 chr2L:5365970-5366090 3.38e-02 67_[+1(3.43e-05)]_45 chr2L:20148473-20148593 3.44e-03 22_[+2(2.09e-05)]_15_[+2(5.02e-06)]_\ 28_[+2(5.67e-05)]_31 chr2R:4782854-4782974 6.96e-01 120 chr2R:6168979-6169099 5.79e-01 120 chr2L:22579043-22579163 9.54e-01 120 chr2R:9972810-9972930 2.41e-01 120 chr3L:14621590-14621710 9.22e-01 120 chr2L:20106721-20106841 1.66e-01 120 chr2L:14288005-14288125 6.43e-02 88_[+2(5.67e-05)]_24 chr3L:3277006-3277126 7.61e-01 120 chr2R:5671648-5671768 9.06e-01 120 chr3R:28545113-28545233 6.05e-03 71_[+1(7.15e-05)]_41 chr3R:4187322-4187442 7.12e-01 120 chr3L:14671691-14671811 1.55e-03 11_[+1(2.62e-05)]_59_[+2(5.67e-05)]_\ 34 chr2R:3581966-3582086 3.41e-01 120 chr3L:16930648-16930768 8.27e-02 120 chr2L:21104477-21104597 9.81e-04 56_[+5(7.90e-06)]_56 chr3R:6170830-6170950 2.25e-01 120 chrX:18788331-18788451 6.95e-01 120 chr3L:5749748-5749868 2.41e-03 81_[+1(2.62e-05)]_31 chrY:3245825-3245945 4.58e-03 103_[+1(5.54e-05)]_9 chrX:14954021-14954141 1.34e-03 65_[+4(3.16e-06)]_47 chr2R:4324885-4325005 1.76e-04 48_[+2(2.09e-05)]_64 chr3R:23159452-23159572 4.62e-04 21_[+4(5.15e-05)]_91 chrX:11483425-11483545 3.70e-04 57_[+1(2.62e-05)]_41_[+2(4.66e-05)]_\ 6 chr3R:6708989-6709109 7.86e-01 120 chr2R:8631919-8632039 4.66e-01 120 chr3L:20495266-20495386 8.04e-03 107_[+2(2.09e-05)]_5 chr3L:176203-176323 2.04e-02 11_[+1(8.16e-06)]_101 chr2L:23174345-23174465 6.20e-01 120 chr2R:11968968-11969088 6.07e-01 120 chrX:17249479-17249599 1.33e-01 120 chr3L:27358873-27358993 3.09e-03 7_[+4(4.33e-05)]_105 chr3L:8891492-8891612 5.87e-01 120 chr2R:23746889-23747009 8.32e-03 73_[+1(5.54e-05)]_39 chr3L:7916360-7916480 6.16e-01 120 chr2R:4013989-4014109 9.86e-04 5_[+5(3.62e-05)]_107 chr2R:23357394-23357514 3.86e-03 24_[+2(5.67e-05)]_9_[+1(7.65e-05)]_\ 71 chr2L:6527117-6527237 6.94e-01 120 chr2R:8394501-8394621 3.80e-03 19_[+5(5.67e-05)]_93 chr2R:5090515-5090635 7.85e-01 120 chr2L:17603346-17603466 4.74e-02 85_[+4(3.13e-05)]_27 chr2R:25190080-25190200 9.82e-01 120 chr2L:21683562-21683682 9.83e-01 120 chr3R:11437628-11437748 1.05e-02 80_[+3(5.10e-05)]_32 chrX:11816698-11816818 9.60e-01 120 chrX:123918-124038 4.81e-01 120 chr2L:4345877-4345997 1.20e-01 120 chr3L:692885-693005 8.18e-05 57_[+2(8.84e-05)]_13_[+1(2.62e-05)]_\ 18_[+5(1.58e-05)]_8 chrX:11389442-11389562 4.71e-01 120 chr2L:9790789-9790909 9.31e-01 120 chr3L:8891288-8891408 2.46e-03 120 chrX:127360-127480 2.22e-02 42_[+3(5.10e-05)]_70 chr2R:7454018-7454138 7.89e-02 120 chr2L:23075516-23075636 9.91e-01 120 chr3R:4479722-4479842 5.33e-03 38_[+3(3.12e-05)]_74 chrX:3343864-3343984 2.69e-03 68_[+4(3.16e-06)]_44 chr3R:12712559-12712679 4.95e-01 120 chr2L:22239762-22239882 6.60e-02 42_[+3(8.23e-05)]_70 chr2R:5307164-5307284 7.87e-01 120 chr3R:25245541-25245661 1.84e-02 29_[+5(6.92e-05)]_83 chrX:4956097-4956217 3.70e-01 120 chr2R:15538008-15538128 3.22e-01 88_[+1(5.54e-05)]_24 chrX:16655145-16655265 9.33e-01 120 chr3L:7510534-7510654 1.50e-01 120 chr3R:24279502-24279622 9.55e-01 120 chr2R:17098563-17098683 1.56e-03 19_[+5(4.41e-05)]_93 chr3L:27279188-27279308 9.45e-01 120 chr3L:17465864-17465984 2.21e-02 76_[+2(2.09e-05)]_36 chr3L:327929-328049 2.28e-01 103_[+3(3.12e-05)]_9 chrX:8142238-8142358 5.67e-02 26_[+1(5.54e-05)]_9_[+1(5.54e-05)]_\ 69 chr2L:20066258-20066378 1.57e-01 109_[+2(2.09e-05)]_3 chr2R:15922448-15922568 6.59e-01 120 chr2R:8420710-8420830 2.17e-01 56_[+1(5.54e-05)]_56 chr3L:607054-607174 3.63e-01 120 chr4:416445-416565 9.43e-01 120 chr2R:11969170-11969290 9.55e-01 120 chr2L:22121037-22121157 4.25e-03 25_[+3(8.23e-05)]_87 chrX:6756328-6756448 6.28e-01 120 chrX:658204-658324 8.36e-01 120 chr2R:7735940-7736060 1.86e-01 76_[+3(3.12e-05)]_36 chr3R:6806833-6806953 7.30e-01 120 chr2L:7065842-7065962 7.36e-01 120 chr3R:20252539-20252659 2.19e-01 120 chrX:18830463-18830583 8.79e-03 120 chr3L:27136402-27136522 4.39e-01 120 chr3L:22749287-22749407 6.06e-03 110_[+2(5.02e-06)]_2 chr4:63442-63562 1.69e-01 25_[+3(3.12e-05)]_87 chr2L:11989824-11989944 5.09e-03 97_[+2(2.09e-05)]_15 chr3R:9869140-9869260 9.48e-01 120 chr2L:9793083-9793203 2.61e-01 120 chr4:68697-68817 1.07e-04 29_[+1(7.15e-05)]_2_[+5(4.41e-05)]_\ 73 chr2R:4824303-4824423 3.28e-01 120 chr3L:1188925-1189045 1.18e-03 44_[+4(3.63e-05)]_57_[+1(6.36e-05)]_\ 3 chr2R:4546578-4546698 9.51e-02 69_[+4(1.63e-05)]_43 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************