******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Kr.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:18355500-18355620 1.0000 120 chr2R:25202606-25202726 1.0000 120 chr2R:25210344-25210464 1.0000 120 chr3L:19152969-19153089 1.0000 120 chr2R:25195204-25195324 1.0000 120 chr3L:22430405-22430525 1.0000 120 chr2L:19204186-19204306 1.0000 120 chrX:7603279-7603399 1.0000 120 chr2R:25192349-25192469 1.0000 120 chr3L:13737462-13737582 1.0000 120 chr2R:15049473-15049593 1.0000 120 chr2R:25207450-25207570 1.0000 120 chrX:15659008-15659128 1.0000 120 chr3L:13082894-13083014 1.0000 120 chr2R:25236933-25237053 1.0000 120 chr3R:30931309-30931429 1.0000 120 chr2R:25243436-25243556 1.0000 120 chr3L:18302144-18302264 1.0000 120 chr2L:5871434-5871554 1.0000 120 chr3R:30920824-30920944 1.0000 120 chr3R:15614073-15614193 1.0000 120 chr2L:6240653-6240773 1.0000 120 chr3L:15758827-15758947 1.0000 120 chr2L:5935457-5935577 1.0000 120 chr3L:16473726-16473846 1.0000 120 chr3L:18291859-18291979 1.0000 120 chr2R:16376734-16376854 1.0000 120 chr2R:25218047-25218167 1.0000 120 chr3L:419870-419990 1.0000 120 chr3L:10771153-10771273 1.0000 120 chrX:10808033-10808153 1.0000 120 chr2R:13568619-13568739 1.0000 120 chr2L:13868521-13868641 1.0000 120 chr3L:18294837-18294957 1.0000 120 chr2R:25208717-25208837 1.0000 120 chr2L:7311933-7312053 1.0000 120 chr2R:25134924-25135044 1.0000 120 chr2L:14273651-14273771 1.0000 120 chr2R:25234213-25234333 1.0000 120 chrX:2399532-2399652 1.0000 120 chr2R:25197039-25197159 1.0000 120 chr3L:18286224-18286344 1.0000 120 chr3R:16728149-16728269 1.0000 120 chr3L:13557258-13557378 1.0000 120 chr2R:7487156-7487276 1.0000 120 chr3L:18278473-18278593 1.0000 120 chrX:15691332-15691452 1.0000 120 chr3L:5983697-5983817 1.0000 120 chr2R:12915090-12915210 1.0000 120 chrX:7190454-7190574 1.0000 120 chr3L:5979588-5979708 1.0000 120 chrX:16203668-16203788 1.0000 120 chr3L:14105134-14105254 1.0000 120 chr3R:22234220-22234340 1.0000 120 chr3L:15200714-15200834 1.0000 120 chr3L:14181377-14181497 1.0000 120 chr3L:20643946-20644066 1.0000 120 chrX:7252274-7252394 1.0000 120 chrX:2983190-2983310 1.0000 120 chr2R:19589948-19590068 1.0000 120 chr3R:21534814-21534934 1.0000 120 chr2L:9486409-9486529 1.0000 120 chr3L:18350807-18350927 1.0000 120 chr2L:11352995-11353115 1.0000 120 chr3L:18851084-18851204 1.0000 120 chr2R:11604400-11604520 1.0000 120 chr2L:7590473-7590593 1.0000 120 chr2L:7624615-7624735 1.0000 120 chr3R:6715551-6715671 1.0000 120 chr3L:5840581-5840701 1.0000 120 chr2L:1412079-1412199 1.0000 120 chr3L:18290150-18290270 1.0000 120 chr2L:19333342-19333462 1.0000 120 chr3L:19025598-19025718 1.0000 120 chrX:18529951-18530071 1.0000 120 chr2R:8244687-8244807 1.0000 120 chr3L:22130822-22130942 1.0000 120 chr2L:15454915-15455035 1.0000 120 chr2L:3599633-3599753 1.0000 120 chr3R:15579811-15579931 1.0000 120 chr2L:13591421-13591541 1.0000 120 chr2R:25242099-25242219 1.0000 120 chr2R:25212734-25212854 1.0000 120 chr2L:6541549-6541669 1.0000 120 chr3L:10770195-10770315 1.0000 120 chrX:15818952-15819072 1.0000 120 chr2R:18315696-18315816 1.0000 120 chr3L:15289397-15289517 1.0000 120 chr2R:25197507-25197627 1.0000 120 chr3L:17463967-17464087 1.0000 120 chr3R:8887235-8887355 1.0000 120 chr2L:14482285-14482405 1.0000 120 chrX:15692339-15692459 1.0000 120 chr3L:12718516-12718636 1.0000 120 chr3L:20696638-20696758 1.0000 120 chr3R:5031081-5031201 1.0000 120 chr3L:10657720-10657840 1.0000 120 chr2R:25244735-25244855 1.0000 120 chr3R:15612392-15612512 1.0000 120 chr2R:25192554-25192674 1.0000 120 chr3R:8701404-8701524 1.0000 120 chr2L:12675607-12675727 1.0000 120 chr2L:15470653-15470773 1.0000 120 chr2R:6588962-6589082 1.0000 120 chrX:3142163-3142283 1.0000 120 chrX:7275405-7275525 1.0000 120 chr2L:5416897-5417017 1.0000 120 chr2R:25204023-25204143 1.0000 120 chr2R:22548923-22549043 1.0000 120 chr2R:25200365-25200485 1.0000 120 chr3L:2880475-2880595 1.0000 120 chr3R:30223112-30223232 1.0000 120 chr3R:18991493-18991613 1.0000 120 chr2R:25171926-25172046 1.0000 120 chr3L:13058968-13059088 1.0000 120 chr3L:10860870-10860990 1.0000 120 chr3R:21864322-21864442 1.0000 120 chr3L:5856035-5856155 1.0000 120 chr3R:9145229-9145349 1.0000 120 chr2L:2453855-2453975 1.0000 120 chr3L:12727178-12727298 1.0000 120 chr2L:7272964-7273084 1.0000 120 chr3L:17362273-17362393 1.0000 120 chr3L:15225067-15225187 1.0000 120 chr2L:14479793-14479913 1.0000 120 chr3R:12256820-12256940 1.0000 120 chr2L:4357701-4357821 1.0000 120 chr3L:2855951-2856071 1.0000 120 chr3L:10999858-10999978 1.0000 120 chr3R:30420384-30420504 1.0000 120 chr2R:11401417-11401537 1.0000 120 chrX:8422525-8422645 1.0000 120 chrX:7272854-7272974 1.0000 120 chrX:7230297-7230417 1.0000 120 chr2L:14477960-14478080 1.0000 120 chr3R:24597407-24597527 1.0000 120 chr3R:25446819-25446939 1.0000 120 chr2L:21854152-21854272 1.0000 120 chr3R:15669633-15669753 1.0000 120 chrX:15689941-15690061 1.0000 120 chrX:19890425-19890545 1.0000 120 chr3R:9395361-9395481 1.0000 120 chr3L:12729383-12729503 1.0000 120 chr3L:20779063-20779183 1.0000 120 chr2L:18888853-18888973 1.0000 120 chr2L:11345014-11345134 1.0000 120 chr4:810493-810613 1.0000 120 chr2R:15913001-15913121 1.0000 120 chrX:17812301-17812421 1.0000 120 chr3R:22712357-22712477 1.0000 120 chr3R:8842619-8842739 1.0000 120 chr2R:25212935-25213055 1.0000 120 chrX:17496053-17496173 1.0000 120 chrX:603566-603686 1.0000 120 chr3R:30247818-30247938 1.0000 120 chrX:2139628-2139748 1.0000 120 chr2R:13562329-13562449 1.0000 120 chrX:12265123-12265243 1.0000 120 chr3L:12650419-12650539 1.0000 120 chr2R:12532046-12532166 1.0000 120 chrX:1106270-1106390 1.0000 120 chr2R:15894369-15894489 1.0000 120 chr2L:14455103-14455223 1.0000 120 chr3L:14166042-14166162 1.0000 120 chr3R:10353782-10353902 1.0000 120 chr2L:14261093-14261213 1.0000 120 chr3L:10323086-10323206 1.0000 120 chr4:507209-507329 1.0000 120 chr3R:12313830-12313950 1.0000 120 chr3R:10657304-10657424 1.0000 120 chr2L:17747934-17748054 1.0000 120 chr3L:12695714-12695834 1.0000 120 chr2L:7625441-7625561 1.0000 120 chr2L:12672585-12672705 1.0000 120 chr3L:22385240-22385360 1.0000 120 chr2L:1709967-1710087 1.0000 120 chr2L:14267821-14267941 1.0000 120 chr2L:9583180-9583300 1.0000 120 chr3L:13394768-13394888 1.0000 120 chr2L:3775558-3775678 1.0000 120 chrX:9759574-9759694 1.0000 120 chr3L:14135684-14135804 1.0000 120 chr2R:25204935-25205055 1.0000 120 chr3R:26884569-26884689 1.0000 120 chr3L:22131024-22131144 1.0000 120 chr2L:585179-585299 1.0000 120 chr3L:18291077-18291197 1.0000 120 chr2L:14481995-14482115 1.0000 120 chr3R:14039980-14040100 1.0000 120 chr2R:15356262-15356382 1.0000 120 chr2L:10003123-10003243 1.0000 120 chrX:17336209-17336329 1.0000 120 chr2L:20995115-20995235 1.0000 120 chrX:17520795-17520915 1.0000 120 chr2L:2167392-2167512 1.0000 120 chr3L:18219141-18219261 1.0000 120 chr3L:7981469-7981589 1.0000 120 chr3L:12651691-12651811 1.0000 120 chr2R:25216580-25216700 1.0000 120 chr2L:15480952-15481072 1.0000 120 chr3R:14005981-14006101 1.0000 120 chr3R:10617974-10618094 1.0000 120 chr3R:30917544-30917664 1.0000 120 chr2R:13568819-13568939 1.0000 120 chr3R:11781022-11781142 1.0000 120 chr3L:9368747-9368867 1.0000 120 chr2L:250048-250168 1.0000 120 chr3L:6945650-6945770 1.0000 120 chr2L:19319866-19319986 1.0000 120 chr3L:18833022-18833142 1.0000 120 chr3L:6216950-6217070 1.0000 120 chrX:2319867-2319987 1.0000 120 chr3L:19036515-19036635 1.0000 120 chr3L:14664555-14664675 1.0000 120 chr3R:13989152-13989272 1.0000 120 chrX:7168266-7168386 1.0000 120 chr3R:27197186-27197306 1.0000 120 chr2R:19893561-19893681 1.0000 120 chr2L:14464146-14464266 1.0000 120 chr3R:12261255-12261375 1.0000 120 chr3R:7139838-7139958 1.0000 120 chr3L:9469195-9469315 1.0000 120 chr3L:10812137-10812257 1.0000 120 chr2R:6579121-6579241 1.0000 120 chr3R:19798669-19798789 1.0000 120 chr3R:19353290-19353410 1.0000 120 chr2L:18927896-18928016 1.0000 120 chr3R:23790669-23790789 1.0000 120 chrX:4560543-4560663 1.0000 120 chr3L:5621073-5621193 1.0000 120 chr2R:21045298-21045418 1.0000 120 chr2L:14464866-14464986 1.0000 120 chr2L:15326004-15326124 1.0000 120 chr2L:19339099-19339219 1.0000 120 chr2R:20044947-20045067 1.0000 120 chr3R:26885496-26885616 1.0000 120 chr3L:1916928-1917048 1.0000 120 chr2L:18983004-18983124 1.0000 120 chr3L:15638621-15638741 1.0000 120 chr2L:14450049-14450169 1.0000 120 chr3L:15678382-15678502 1.0000 120 chr3L:12150883-12151003 1.0000 120 chr2L:6216018-6216138 1.0000 120 chr2L:6241922-6242042 1.0000 120 chr2L:3834032-3834152 1.0000 120 chr2L:5891766-5891886 1.0000 120 chr3R:6977237-6977357 1.0000 120 chr2R:9710603-9710723 1.0000 120 chr2L:3609084-3609204 1.0000 120 chr2R:12017669-12017789 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Kr/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Kr.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.268 C 0.232 G 0.222 T 0.277 Background letter frequencies (from file dataset with add-one prior applied): A 0.268 C 0.232 G 0.222 T 0.277 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AACCCTTT MEME-1 width = 8 sites = 103 llr = 844 E-value = 5.8e-062 ******************************************************************************** -------------------------------------------------------------------------------- Motif AACCCTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 9a:::::: pos.-specific C ::89a2:: probability G :::::::: matrix T ::2::8a9 bits 2.2 2.0 * 1.7 * ** * 1.5 * ** * Relative 1.3 ***** ** Entropy 1.1 ******** (11.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AACCCTTT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCCTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9469195-9469315 91 1.91e-05 CTTTTATGGT AACCCTTT GAAATGGGGG chr3R:7139838-7139958 74 1.91e-05 CCCGACAAGC AACCCTTT TCCGTTTATT chr3R:12261255-12261375 52 1.91e-05 CCGGGATGGT AACCCTTT GTGGCATTCA chr3L:18833022-18833142 4 1.91e-05 TTG AACCCTTT TTTGAGCAAA chr2L:19319866-19319986 59 1.91e-05 TGATCAGCTC AACCCTTT TGCTTGGAAA chr3R:11781022-11781142 29 1.91e-05 TTCCTCTGTA AACCCTTT CACCACTTGC chr3L:7981469-7981589 40 1.91e-05 TTGATTCTGT AACCCTTt tgattgtgtt chr2L:12672585-12672705 53 1.91e-05 ATGATATTGA AACCCTTT TTTTTACCCT chr2L:7625441-7625561 58 1.91e-05 TTTGACAATC AACCCTTT ATTTTCTCGA chr3L:10323086-10323206 3 1.91e-05 CT AACCCTTT AAACGTTTGA chr2L:14261093-14261213 103 1.91e-05 AAAAAAGAAA AACCCTTT TATTTCCTTC chrX:2139628-2139748 46 1.91e-05 CAACATATAA AACCCTTT CGAAACTGTA chr2R:15913001-15913121 1 1.91e-05 . AACCCTTT TGGTCCTTAG chr3R:15669633-15669753 105 1.91e-05 AGAAATGGAA AACCCTTT AATTGGTC chr3R:30420384-30420504 23 1.91e-05 ATGTGACCGA AACCCTTT CTCTTTTTTT chrX:3142163-3142283 43 1.91e-05 TCCGAGCAAC AACCCTTT TTGTTTGTGC chr3R:8701404-8701524 105 1.91e-05 CTACTTCCTC AACCCTTT GGCGGACG chr3R:15612392-15612512 29 1.91e-05 TCCAACGTGC AACCCTTT CCGGCGGAGT chr3L:20696638-20696758 62 1.91e-05 CGATGTGCTT AACCCTTT TATGGGCGCG chr3R:8887235-8887355 11 1.91e-05 CCTCGAAATC AACCCTTT CTGAGCCCTT chrX:15818952-15819072 51 1.91e-05 AATGCCGTTC AACCCTTT CCAAATATTC chr2L:6541549-6541669 34 1.91e-05 GTTGCTTGTT AACCCTTT GAGTTGCGCT chrX:18529951-18530071 46 1.91e-05 GCAGCTTGTC AACCCTTT TCGGCCCGAT chr2L:19333342-19333462 65 1.91e-05 TGAAAAACAT AACCCTTT GCTGATGGCT chr2L:1412079-1412199 35 1.91e-05 TTTATACATT AACCCTTT GGGGCATCGT chrX:7252274-7252394 53 1.91e-05 AACAATGCTT AACCCTTT GATGCCCATC chr3L:20643946-20644066 72 1.91e-05 TATCCCAGGG AACCCTTT CTATTTCAGA chr3L:5983697-5983817 51 1.91e-05 GCATCGTTTT AACCCTTT CGTGTTGATG chrX:15691332-15691452 54 1.91e-05 TAACCCGCTT AACCCTTT CCAACCGAAT chr2R:25134924-25135044 55 1.91e-05 AGGGAGTTTC AACCCTTT CGGCGCTATC chr2R:16376734-16376854 86 1.91e-05 GCCAAAGGAC AACCCTTT GTCACATTCT chr3L:16473726-16473846 26 1.91e-05 CGAAGTCCTT AACCCTTT CGACGGGCGA chr3L:15758827-15758947 58 1.91e-05 GCTGCCCTTT AACCCTTT GAGAATACTC chr3R:30920824-30920944 27 1.91e-05 TGGAGTGTTT AACCCTTT GGTGGGCCAG chr3L:18302144-18302264 76 1.91e-05 TTTGCTTTTT AACCCTTT TGGGTGGAGT chrX:7603279-7603399 19 1.91e-05 GAAGCTACCC AACCCTTT GCCCATTTTC chr2L:19204186-19204306 51 1.91e-05 CCGGCCCATT AACCCTTT GACCCCGCAC chr2R:25202606-25202726 100 1.91e-05 CAAATAAAGC AACCCTTT TCTGTTGACC chr2L:3834032-3834152 19 3.50e-05 TCCCATCCTT AACCCCTT CAGAAACACC chr2L:6241922-6242042 57 3.50e-05 CAGGGGCGGA AACCCCTT CTTGCCGGAG chr2L:585179-585299 28 3.50e-05 TTCCGCTTTT AACCCCTT GCTTAACCCC chr2L:14455103-14455223 41 3.50e-05 CGAGCTGGTT AACCCCTT TTAACCCTTA chrX:7272854-7272974 34 3.50e-05 GAAAGTTGTT AACCCCTT CGAGGCCACA chrX:8422525-8422645 12 3.50e-05 GTACACATAC AACCCCTT CTTCTCTTCC chr3L:5856035-5856155 9 3.50e-05 ATTTTCTT AACCCCTT GATGGCCAGC chr3R:30223112-30223232 73 3.50e-05 CTGCTGTCCC AACCCCTT TCGCACCATT chr2L:15454915-15455035 39 3.50e-05 CCGGTAAATT AACCCCTT CGCGGAGTCT chr3L:18290150-18290270 86 3.50e-05 GCATTTTTCT AACCCCTT TTTCCAGCCG chr2L:11352995-11353115 108 3.50e-05 TTAAATTTGA AACCCCTT GATTC chr2L:13868521-13868641 18 3.50e-05 GCATCTCGTC AACCCCTT TTCGAACTGC chr2R:25236933-25237053 4 3.50e-05 GGA AACCCCTT TTAAAAAGTG chr2R:25210344-25210464 38 3.50e-05 TTAACGAAGC AACCCCTT AAAATATAAG chr3L:12150883-12151003 24 5.78e-05 GGGCTACCCA AATCCTTT TTCACTTTTT chr2L:15326004-15326124 112 5.78e-05 CCGACCATCG AATCCTTT T chr3L:5621073-5621193 92 5.78e-05 TTTTTACCGT AATCCTTT CGTTTTGAGC chr2R:25200365-25200485 26 5.78e-05 AGCACTTTTA AATCCTTT TTCCGTACAC chr2L:15470653-15470773 69 5.78e-05 AAGAATGCTC AATCCTTT TACCATTTCC chr2R:11604400-11604520 42 5.78e-05 ACTTTTTCTT AATCCTTT TTTTCGCCGT chr3L:5979588-5979708 54 5.78e-05 GTTCTCTGGT AATCCTTT ATTTTATACA chr2R:25218047-25218167 1 5.78e-05 . AATCCTTT GCAACGTAGC chr3L:13082894-13083014 23 5.78e-05 CTACTACACC AATCCTTT TGGTTAACCA chr2L:13591421-13591541 69 7.68e-05 TTCCCCTTTT AATCCCTT CCCTCCCCAT chr3L:1916928-1917048 43 1.28e-04 TGTTGTCTGC TACCCTTT TGCTCCTTTG chrX:17520795-17520915 21 1.28e-04 CTGCCAGATT TACCCTTT TTGACTTTTC chr2L:10003123-10003243 6 1.28e-04 TTTTT CACCCTTT TGTTTGCCAG chr2L:18888853-18888973 39 1.28e-04 AGGGGCGTTT AACCCTTG ACATATGGTC chr3R:18991493-18991613 2 1.28e-04 T CACCCTTT TCTAGGGATG chr3L:17463967-17464087 88 1.28e-04 gtaagTGCTG AACCCTTG CCCGCTGAAA chrX:16203668-16203788 103 1.28e-04 TCGCCCAATT TACCCTTT CACGGTTTTT chrX:15659008-15659128 102 1.28e-04 GGACACTTAC AACCCTTG CCGGAGTTTT chr3L:18291077-18291197 89 1.63e-04 CCACTTGGCC AACCCTTA ACCACACACA chrX:17812301-17812421 9 1.63e-04 CCACTCTT AACCCTTA ACCCCCCGCG chr3L:2880475-2880595 7 1.63e-04 GGGCAC AACCCTTA Accgacttcg chrX:7275405-7275525 14 1.63e-04 CGCAGCGCAC AACCCTTA ATACCCACAT chr2L:14482285-14482405 68 1.63e-04 GCCGGATGTT ACCCCTTT TCATACCGGC chr2R:25212734-25212854 85 1.63e-04 TATCCATGGC ACCCCTTT TTTGACTCTC chr2L:7624615-7624735 7 1.63e-04 GTAGTC ACCCCTTT TCGCTCACTT chr3R:23790669-23790789 50 1.79e-04 ACATGGGTTT GACCCTTT TGCTGCCGTT chr3R:26884569-26884689 17 1.79e-04 CTCTTCCTGG GACCCTTT TGTGTCCACC chr2L:2453855-2453975 96 2.01e-04 ATTCCAATTT AACCATTT TCGAAAGATC chrX:7190454-7190574 98 2.01e-04 AATTTCAATT AACCATTT AACCAAAAGA chrX:9759574-9759694 11 2.24e-04 GTTCGTTAAC AACTCTTT GAATGGTAAT chr3L:6216950-6217070 9 2.64e-04 GAAATGAA AACCCATT AAAATTGTTT chr3L:10860870-10860990 111 2.64e-04 GGTAAACCTT AACCCATT TG chr2R:25204023-25204143 1 2.64e-04 . AACACTTT TGCGTGTAGG chr2R:25192349-25192469 5 2.64e-04 TGGC AACACTTT TATACCCCTC chr3R:10353782-10353902 29 2.80e-04 GGGATTTATT AACCCTTC ACCCGCACAC chr3L:10771153-10771273 47 2.80e-04 TCTCGAGTTT AACCCTTC CGGTGCGAAC chr3R:21534814-21534934 34 3.23e-04 ACAAATTGTT CACCCCTT CTACGCTAGC chr3R:9395361-9395481 58 3.53e-04 TTTAATTTAC ACCCCCTT GCTTTCGTCG chr3R:19798669-19798789 84 3.84e-04 CTACAAACGG AACCACTT AGGGCACACA chr2L:19339099-19339219 7 4.22e-04 AGCCTA AACTCCTT AACTCTTCAA chr3L:9368747-9368867 95 4.22e-04 TACCTAACCT AAGCCTTT TGCTGTGACC chr2R:6588962-6589082 26 4.22e-04 CGCTTCAATG AACTCCTT GTGGCCAAAA chr2L:14464866-14464986 4 4.40e-04 CTC AACCGTTT GTCAACAGCA chr3L:14166042-14166162 71 4.58e-04 CGGGGAGTAG AACACCTT TTCCTCTGGA chr3L:15638621-15638741 61 5.33e-04 CAGCAGGCTG TATCCTTT TCGGCTTTGC chr3R:14039980-14040100 61 5.33e-04 CGACTACGAA CATCCTTT ACAACATACC chr3R:12313830-12313950 52 5.33e-04 GCACACGACA TATCCTTT TCCCTTTCGG chr3L:14181377-14181497 39 5.33e-04 GGCCACTCAT AATCCTTG CTCGATTAGA chr2R:25243436-25243556 113 5.94e-04 GCTTCATTGT GATCCTTT chr3L:18294837-18294957 37 6.20e-04 GCGCTAAATA AATCATTT CTCTTCGATT chr3L:419870-419990 104 6.47e-04 CTGAGTGATA AATTCTTT GATTTGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCCTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9469195-9469315 1.9e-05 90_[+1]_22 chr3R:7139838-7139958 1.9e-05 73_[+1]_39 chr3R:12261255-12261375 1.9e-05 51_[+1]_61 chr3L:18833022-18833142 1.9e-05 3_[+1]_109 chr2L:19319866-19319986 1.9e-05 58_[+1]_54 chr3R:11781022-11781142 1.9e-05 28_[+1]_84 chr3L:7981469-7981589 1.9e-05 39_[+1]_73 chr2L:12672585-12672705 1.9e-05 52_[+1]_60 chr2L:7625441-7625561 1.9e-05 57_[+1]_55 chr3L:10323086-10323206 1.9e-05 2_[+1]_110 chr2L:14261093-14261213 1.9e-05 102_[+1]_10 chrX:2139628-2139748 1.9e-05 45_[+1]_67 chr2R:15913001-15913121 1.9e-05 [+1]_112 chr3R:15669633-15669753 1.9e-05 104_[+1]_8 chr3R:30420384-30420504 1.9e-05 22_[+1]_90 chrX:3142163-3142283 1.9e-05 42_[+1]_70 chr3R:8701404-8701524 1.9e-05 104_[+1]_8 chr3R:15612392-15612512 1.9e-05 28_[+1]_84 chr3L:20696638-20696758 1.9e-05 61_[+1]_51 chr3R:8887235-8887355 1.9e-05 10_[+1]_102 chrX:15818952-15819072 1.9e-05 50_[+1]_62 chr2L:6541549-6541669 1.9e-05 33_[+1]_79 chrX:18529951-18530071 1.9e-05 45_[+1]_67 chr2L:19333342-19333462 1.9e-05 64_[+1]_48 chr2L:1412079-1412199 1.9e-05 34_[+1]_78 chrX:7252274-7252394 1.9e-05 52_[+1]_60 chr3L:20643946-20644066 1.9e-05 71_[+1]_41 chr3L:5983697-5983817 1.9e-05 50_[+1]_62 chrX:15691332-15691452 1.9e-05 53_[+1]_59 chr2R:25134924-25135044 1.9e-05 54_[+1]_58 chr2R:16376734-16376854 1.9e-05 85_[+1]_27 chr3L:16473726-16473846 1.9e-05 25_[+1]_87 chr3L:15758827-15758947 1.9e-05 57_[+1]_55 chr3R:30920824-30920944 1.9e-05 26_[+1]_86 chr3L:18302144-18302264 1.9e-05 75_[+1]_37 chrX:7603279-7603399 1.9e-05 18_[+1]_94 chr2L:19204186-19204306 1.9e-05 50_[+1]_62 chr2R:25202606-25202726 1.9e-05 99_[+1]_13 chr2L:3834032-3834152 3.5e-05 18_[+1]_94 chr2L:6241922-6242042 3.5e-05 56_[+1]_56 chr2L:585179-585299 3.5e-05 27_[+1]_85 chr2L:14455103-14455223 3.5e-05 40_[+1]_72 chrX:7272854-7272974 3.5e-05 33_[+1]_79 chrX:8422525-8422645 3.5e-05 11_[+1]_101 chr3L:5856035-5856155 3.5e-05 8_[+1]_104 chr3R:30223112-30223232 3.5e-05 72_[+1]_40 chr2L:15454915-15455035 3.5e-05 38_[+1]_74 chr3L:18290150-18290270 3.5e-05 85_[+1]_27 chr2L:11352995-11353115 3.5e-05 107_[+1]_5 chr2L:13868521-13868641 3.5e-05 17_[+1]_95 chr2R:25236933-25237053 3.5e-05 3_[+1]_109 chr2R:25210344-25210464 3.5e-05 37_[+1]_75 chr3L:12150883-12151003 5.8e-05 23_[+1]_89 chr2L:15326004-15326124 5.8e-05 111_[+1]_1 chr3L:5621073-5621193 5.8e-05 91_[+1]_21 chr2R:25200365-25200485 5.8e-05 25_[+1]_87 chr2L:15470653-15470773 5.8e-05 68_[+1]_44 chr2R:11604400-11604520 5.8e-05 41_[+1]_71 chr3L:5979588-5979708 5.8e-05 53_[+1]_59 chr2R:25218047-25218167 5.8e-05 [+1]_112 chr3L:13082894-13083014 5.8e-05 22_[+1]_90 chr2L:13591421-13591541 7.7e-05 68_[+1]_44 chr3L:1916928-1917048 0.00013 42_[+1]_70 chrX:17520795-17520915 0.00013 20_[+1]_92 chr2L:10003123-10003243 0.00013 5_[+1]_107 chr2L:18888853-18888973 0.00013 38_[+1]_74 chr3R:18991493-18991613 0.00013 1_[+1]_111 chr3L:17463967-17464087 0.00013 87_[+1]_25 chrX:16203668-16203788 0.00013 102_[+1]_10 chrX:15659008-15659128 0.00013 101_[+1]_11 chr3L:18291077-18291197 0.00016 88_[+1]_24 chrX:17812301-17812421 0.00016 8_[+1]_104 chr3L:2880475-2880595 0.00016 6_[+1]_106 chrX:7275405-7275525 0.00016 13_[+1]_99 chr2L:14482285-14482405 0.00016 67_[+1]_45 chr2R:25212734-25212854 0.00016 84_[+1]_28 chr2L:7624615-7624735 0.00016 6_[+1]_106 chr3R:23790669-23790789 0.00018 49_[+1]_63 chr3R:26884569-26884689 0.00018 16_[+1]_96 chr2L:2453855-2453975 0.0002 95_[+1]_17 chrX:7190454-7190574 0.0002 97_[+1]_15 chrX:9759574-9759694 0.00022 10_[+1]_102 chr3L:6216950-6217070 0.00026 8_[+1]_104 chr3L:10860870-10860990 0.00026 110_[+1]_2 chr2R:25204023-25204143 0.00026 [+1]_112 chr2R:25192349-25192469 0.00026 4_[+1]_108 chr3R:10353782-10353902 0.00028 28_[+1]_84 chr3L:10771153-10771273 0.00028 46_[+1]_66 chr3R:21534814-21534934 0.00032 33_[+1]_79 chr3R:9395361-9395481 0.00035 57_[+1]_55 chr3R:19798669-19798789 0.00038 83_[+1]_29 chr2L:19339099-19339219 0.00042 6_[+1]_106 chr3L:9368747-9368867 0.00042 94_[+1]_18 chr2R:6588962-6589082 0.00042 25_[+1]_87 chr2L:14464866-14464986 0.00044 3_[+1]_109 chr3L:14166042-14166162 0.00046 70_[+1]_42 chr3L:15638621-15638741 0.00053 60_[+1]_52 chr3R:14039980-14040100 0.00053 60_[+1]_52 chr3R:12313830-12313950 0.00053 51_[+1]_61 chr3L:14181377-14181497 0.00053 38_[+1]_74 chr2R:25243436-25243556 0.00059 112_[+1] chr3L:18294837-18294957 0.00062 36_[+1]_76 chr3L:419870-419990 0.00065 103_[+1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCCTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AACCCTTT width=8 seqs=103 chr3L:9469195-9469315 ( 91) AACCCTTT 1 chr3R:7139838-7139958 ( 74) AACCCTTT 1 chr3R:12261255-12261375 ( 52) AACCCTTT 1 chr3L:18833022-18833142 ( 4) AACCCTTT 1 chr2L:19319866-19319986 ( 59) AACCCTTT 1 chr3R:11781022-11781142 ( 29) AACCCTTT 1 chr3L:7981469-7981589 ( 40) AACCCTTT 1 chr2L:12672585-12672705 ( 53) AACCCTTT 1 chr2L:7625441-7625561 ( 58) AACCCTTT 1 chr3L:10323086-10323206 ( 3) AACCCTTT 1 chr2L:14261093-14261213 ( 103) AACCCTTT 1 chrX:2139628-2139748 ( 46) AACCCTTT 1 chr2R:15913001-15913121 ( 1) AACCCTTT 1 chr3R:15669633-15669753 ( 105) AACCCTTT 1 chr3R:30420384-30420504 ( 23) AACCCTTT 1 chrX:3142163-3142283 ( 43) AACCCTTT 1 chr3R:8701404-8701524 ( 105) AACCCTTT 1 chr3R:15612392-15612512 ( 29) AACCCTTT 1 chr3L:20696638-20696758 ( 62) AACCCTTT 1 chr3R:8887235-8887355 ( 11) AACCCTTT 1 chrX:15818952-15819072 ( 51) AACCCTTT 1 chr2L:6541549-6541669 ( 34) AACCCTTT 1 chrX:18529951-18530071 ( 46) AACCCTTT 1 chr2L:19333342-19333462 ( 65) AACCCTTT 1 chr2L:1412079-1412199 ( 35) AACCCTTT 1 chrX:7252274-7252394 ( 53) AACCCTTT 1 chr3L:20643946-20644066 ( 72) AACCCTTT 1 chr3L:5983697-5983817 ( 51) AACCCTTT 1 chrX:15691332-15691452 ( 54) AACCCTTT 1 chr2R:25134924-25135044 ( 55) AACCCTTT 1 chr2R:16376734-16376854 ( 86) AACCCTTT 1 chr3L:16473726-16473846 ( 26) AACCCTTT 1 chr3L:15758827-15758947 ( 58) AACCCTTT 1 chr3R:30920824-30920944 ( 27) AACCCTTT 1 chr3L:18302144-18302264 ( 76) AACCCTTT 1 chrX:7603279-7603399 ( 19) AACCCTTT 1 chr2L:19204186-19204306 ( 51) AACCCTTT 1 chr2R:25202606-25202726 ( 100) AACCCTTT 1 chr2L:3834032-3834152 ( 19) AACCCCTT 1 chr2L:6241922-6242042 ( 57) AACCCCTT 1 chr2L:585179-585299 ( 28) AACCCCTT 1 chr2L:14455103-14455223 ( 41) AACCCCTT 1 chrX:7272854-7272974 ( 34) AACCCCTT 1 chrX:8422525-8422645 ( 12) AACCCCTT 1 chr3L:5856035-5856155 ( 9) AACCCCTT 1 chr3R:30223112-30223232 ( 73) AACCCCTT 1 chr2L:15454915-15455035 ( 39) AACCCCTT 1 chr3L:18290150-18290270 ( 86) AACCCCTT 1 chr2L:11352995-11353115 ( 108) AACCCCTT 1 chr2L:13868521-13868641 ( 18) AACCCCTT 1 chr2R:25236933-25237053 ( 4) AACCCCTT 1 chr2R:25210344-25210464 ( 38) AACCCCTT 1 chr3L:12150883-12151003 ( 24) AATCCTTT 1 chr2L:15326004-15326124 ( 112) AATCCTTT 1 chr3L:5621073-5621193 ( 92) AATCCTTT 1 chr2R:25200365-25200485 ( 26) AATCCTTT 1 chr2L:15470653-15470773 ( 69) AATCCTTT 1 chr2R:11604400-11604520 ( 42) AATCCTTT 1 chr3L:5979588-5979708 ( 54) AATCCTTT 1 chr2R:25218047-25218167 ( 1) AATCCTTT 1 chr3L:13082894-13083014 ( 23) AATCCTTT 1 chr2L:13591421-13591541 ( 69) AATCCCTT 1 chr3L:1916928-1917048 ( 43) TACCCTTT 1 chrX:17520795-17520915 ( 21) TACCCTTT 1 chr2L:10003123-10003243 ( 6) CACCCTTT 1 chr2L:18888853-18888973 ( 39) AACCCTTG 1 chr3R:18991493-18991613 ( 2) CACCCTTT 1 chr3L:17463967-17464087 ( 88) AACCCTTG 1 chrX:16203668-16203788 ( 103) TACCCTTT 1 chrX:15659008-15659128 ( 102) AACCCTTG 1 chr3L:18291077-18291197 ( 89) AACCCTTA 1 chrX:17812301-17812421 ( 9) AACCCTTA 1 chr3L:2880475-2880595 ( 7) AACCCTTA 1 chrX:7275405-7275525 ( 14) AACCCTTA 1 chr2L:14482285-14482405 ( 68) ACCCCTTT 1 chr2R:25212734-25212854 ( 85) ACCCCTTT 1 chr2L:7624615-7624735 ( 7) ACCCCTTT 1 chr3R:23790669-23790789 ( 50) GACCCTTT 1 chr3R:26884569-26884689 ( 17) GACCCTTT 1 chr2L:2453855-2453975 ( 96) AACCATTT 1 chrX:7190454-7190574 ( 98) AACCATTT 1 chrX:9759574-9759694 ( 11) AACTCTTT 1 chr3L:6216950-6217070 ( 9) AACCCATT 1 chr3L:10860870-10860990 ( 111) AACCCATT 1 chr2R:25204023-25204143 ( 1) AACACTTT 1 chr2R:25192349-25192469 ( 5) AACACTTT 1 chr3R:10353782-10353902 ( 29) AACCCTTC 1 chr3L:10771153-10771273 ( 47) AACCCTTC 1 chr3R:21534814-21534934 ( 34) CACCCCTT 1 chr3R:9395361-9395481 ( 58) ACCCCCTT 1 chr3R:19798669-19798789 ( 84) AACCACTT 1 chr2L:19339099-19339219 ( 7) AACTCCTT 1 chr3L:9368747-9368867 ( 95) AAGCCTTT 1 chr2R:6588962-6589082 ( 26) AACTCCTT 1 chr2L:14464866-14464986 ( 4) AACCGTTT 1 chr3L:14166042-14166162 ( 71) AACACCTT 1 chr3L:15638621-15638741 ( 61) TATCCTTT 1 chr3R:14039980-14040100 ( 61) CATCCTTT 1 chr3R:12313830-12313950 ( 52) TATCCTTT 1 chr3L:14181377-14181497 ( 39) AATCCTTG 1 chr2R:25243436-25243556 ( 113) GATCCTTT 1 chr3L:18294837-18294957 ( 37) AATCATTT 1 chr3L:419870-419990 ( 104) AATTCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCCTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 7.83715 E= 5.8e-062 172 -258 -293 -251 184 -258 -1333 -1333 -1333 183 -451 -75 -320 200 -1333 -284 -279 203 -451 -1333 -379 -19 -1333 148 -1333 -1333 -1333 185 -279 -358 -252 170 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCCTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 103 E= 5.8e-062 0.883495 0.038835 0.029126 0.048544 0.961165 0.038835 0.000000 0.000000 0.000000 0.825243 0.009709 0.165049 0.029126 0.932039 0.000000 0.038835 0.038835 0.951456 0.009709 0.000000 0.019417 0.203883 0.000000 0.776699 0.000000 0.000000 0.000000 1.000000 0.038835 0.019417 0.038835 0.902913 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCCTTT MEME-1 regular expression -------------------------------------------------------------------------------- AACCC[TC]TT -------------------------------------------------------------------------------- Time 7.41 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAGGGTT MEME-2 width = 8 sites = 69 llr = 649 E-value = 1.2e-059 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAGGGTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 9a9::::: pos.-specific C :::::::: probability G 1:1aaa2: matrix T ::::::8a bits 2.2 * 2.0 *** 1.7 * *** 1.5 ****** * Relative 1.3 ****** * Entropy 1.1 ******** (13.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAGGGTT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGGTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:5891766-5891886 67 1.62e-05 AGCAGCGAGA AAAGGGTT CGATCCTCCG chr2R:20044947-20045067 47 1.62e-05 GCTGCAAACA AAAGGGTT GCGTATAAAT chrX:4560543-4560663 73 1.62e-05 GGACCGGCGA AAAGGGTT GCGGACCAGG chr3L:6945650-6945770 47 1.62e-05 tctgtgGGCA AAAGGGTT AAAGCTAAAA chr2L:14481995-14482115 43 1.62e-05 TGAAGTTGGA AAAGGGTT AAACTATGCA chrX:9759574-9759694 101 1.62e-05 GGAAGTTTCG AAAGGGTT GAGTTCCCAG chr2L:3775558-3775678 1 1.62e-05 . AAAGGGTT TTCAGATTAA chr2R:13562329-13562449 49 1.62e-05 TTCTCAAATC AAAGGGTT AGGATGCTCG chrX:2139628-2139748 100 1.62e-05 AAACTGCGAT AAAGGGTT GATTCCTGTG chrX:603566-603686 51 1.62e-05 GAAGTCATTG AAAGGGTT GCCTCAAAAC chrX:15689941-15690061 11 1.62e-05 TAGACAAAGA AAAGGGTT AGAAAATGTA chrX:7230297-7230417 110 1.62e-05 TCACTGCCCG AAAGGGTT AAT chr3L:10999858-10999978 27 1.62e-05 ACAGCATTCG AAAGGGTT TTCGGATGTT chr3L:12727178-12727298 39 1.62e-05 GGATGTGTTG AAAGGGTT CGAGGTGCCA chr3R:9145229-9145349 45 1.62e-05 GAAGGCCCAG AAAGGGTT AGAAACCGAC chr2R:25171926-25172046 45 1.62e-05 CAATGCTTTC AAAGGGTT AAAATTTGTG chr2L:5416897-5417017 58 1.62e-05 TCTGCCCCTA AAAGGGTT GCATGCCATC chr2R:25244735-25244855 15 1.62e-05 AGGTTGGATA AAAGGGTT AAATTAAAAC chr3L:10657720-10657840 13 1.62e-05 TCGCTGCACC AAAGGGTT AAATGCCCCA chr3L:20696638-20696758 90 1.62e-05 CATTGTACCA AAAGGGTT GTTCAGACCC chr3L:12718516-12718636 101 1.62e-05 CCGGAAAAGC AAAGGGTT AGACCATATT chr2R:18315696-18315816 85 1.62e-05 ACCGGCTACT AAAGGGTT TATGCAAATT chr3L:19025598-19025718 54 1.62e-05 GGAAAAGAGA AAAGGGTT GCATTAGTCA chr3L:5840581-5840701 108 1.62e-05 GGAGCTCCGA AAAGGGTT GGGTC chr3R:6715551-6715671 98 1.62e-05 AGCGGACATG AAAGGGTT GAAGGGTGGG chr3L:18851084-18851204 92 1.62e-05 CGAATTTACA AAAGGGTT AGTTCCTAAG chr3L:15200714-15200834 75 1.62e-05 GTGACCGGCG AAAGGGTT CAAATGCCTG chr2R:12915090-12915210 61 1.62e-05 TGGGGAGGGA AAAGGGTT GTAGATGACT chr2R:7487156-7487276 37 1.62e-05 TTAAGGTGGA AAAGGGTT ATTGAATGTC chr3R:16728149-16728269 43 1.62e-05 CGTAGCCACC AAAGGGTT AATGGAGGGG chr3L:18286224-18286344 86 1.62e-05 GGACATCCCG AAAGGGTT AGATTCCGTT chrX:2399532-2399652 72 1.62e-05 GTTCGGAAAA AAAGGGTT AGATCAGGTT chr3L:18291859-18291979 98 1.62e-05 CACATTTAAA AAAGGGTT GATTTCTTAT chr2L:6240653-6240773 88 1.62e-05 AACAATGAGC AAAGGGTT GGCTGGCAGC chr3R:15614073-15614193 25 1.62e-05 GACAAGCGTG AAAGGGTT TCGAGTCGAG chr3R:30931309-30931429 67 1.62e-05 CTGCGGCGTC AAAGGGTT AATAAGTTGC chr2R:25236933-25237053 25 1.62e-05 AAAAGTGCAT AAAGGGTT GTCGCTATCC chr2L:14464146-14464266 6 2.91e-05 AAACG AAAGGGGT TGCGGCATTA chr3L:13394768-13394888 47 2.91e-05 GTTATGCGGA AAAGGGGT TAATAAACCG chr2L:1709967-1710087 24 2.91e-05 GGTGTGGAAG AAAGGGGT AAGTCGGAGG chrX:19890425-19890545 25 2.91e-05 TGCAACAGGT AAAGGGGT GTGTTTGTGG chr2L:14477960-14478080 90 2.91e-05 TCGGTCCTTG AAAGGGGT TGCAATCTAC chr3L:2855951-2856071 73 2.91e-05 ATGAGTGATA AAAGGGGT AAAGCACAAC chr2R:6588962-6589082 47 2.91e-05 GCCAAAACAC AAAGGGGT GGCTCATACC chr3L:17463967-17464087 31 2.91e-05 ATGAGACTGC Aaaggggt aaggttaagg chr2R:25197507-25197627 98 2.91e-05 TTGATGCCCA AAAGGGGT GGACATTATG chr3L:10771153-10771273 106 2.91e-05 GGCAAGAAGA AAAGGGGT GATAAAA chr3L:22430405-22430525 63 2.91e-05 GTAGCCAGCT AAAGGGGT TAGCCGATCT chr3R:27197186-27197306 90 4.25e-05 GGGGTTAAGG GAAGGGTT GTGGCAAGGA chr2R:15356262-15356382 16 4.25e-05 TGACCTTTTG GAAGGGTT TGTTGCGTGA chr3R:21534814-21534934 61 4.25e-05 CAGCAGCAGA GAAGGGTT GGAAAAATCC chr3L:18294837-18294957 95 4.25e-05 TGTCCCGACT GAAGGGTT TACTTTGAAT chr2L:18983004-18983124 65 5.59e-05 CAGTCCAGTC AAGGGGTT ATGCCCGAGT chr2L:21854152-21854272 94 5.59e-05 ATCTAACCAG AAGGGGTT ACATTTACAG chr3R:12256820-12256940 63 5.59e-05 CTGGCAGGAG AAGGGGTT AAGACGGTGC chr2R:13568619-13568739 83 5.59e-05 GATTTTCGTT AAGGGGTT AAATATTCTT chr3R:19798669-19798789 37 6.94e-05 GCGAGCCTAG AAAGGGTC AACCTGTTGG chr2R:6579121-6579241 41 6.94e-05 GAAAGCAGTG AAAGGGTC TGCAAGGGTG chr3R:14005981-14006101 77 6.94e-05 ACCGATTAAT AAAGGGTC ACAAGGGGGA chrX:17336209-17336329 97 8.01e-05 GGGTCAATTG GAAGGGGT AACAGCAGGG chr2R:25212935-25213055 18 8.01e-05 ATGCAATAAT GAAGGGGT CACAAGCGCA chr3L:10770195-10770315 90 8.01e-05 GGAGTAGAGT GAAGGGGT ATTCTCGATG chr2L:14479793-14479913 61 9.37e-05 AATACGAACA AAAGGGCT GGAAAACAAA chr2R:25210344-25210464 63 9.37e-05 AAGAAACCTT AAAGGGCT CACATCCCTT chr3L:15638621-15638741 36 1.45e-04 TGCTAAACGG AAATGGTT AGGCTGACAG chr2L:7272964-7273084 15 1.45e-04 TGGGCTGGCA AAATGGTT TAGGCAGGTG chr3R:30223112-30223232 26 1.45e-04 CCAGCCAGAG AAAGTGTT TTCCCCGGTT chr2R:25218047-25218167 74 1.45e-04 GCGGCTAGAG AAAGTGTT TGTTTCCCAC chr2R:21045298-21045418 53 1.69e-04 TTGACGGAGG AGAGGGTT GATTCCCTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGGTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:5891766-5891886 1.6e-05 66_[+2]_46 chr2R:20044947-20045067 1.6e-05 46_[+2]_66 chrX:4560543-4560663 1.6e-05 72_[+2]_40 chr3L:6945650-6945770 1.6e-05 46_[+2]_66 chr2L:14481995-14482115 1.6e-05 42_[+2]_70 chrX:9759574-9759694 1.6e-05 100_[+2]_12 chr2L:3775558-3775678 1.6e-05 [+2]_112 chr2R:13562329-13562449 1.6e-05 48_[+2]_64 chrX:2139628-2139748 1.6e-05 99_[+2]_13 chrX:603566-603686 1.6e-05 50_[+2]_62 chrX:15689941-15690061 1.6e-05 10_[+2]_102 chrX:7230297-7230417 1.6e-05 109_[+2]_3 chr3L:10999858-10999978 1.6e-05 26_[+2]_86 chr3L:12727178-12727298 1.6e-05 38_[+2]_74 chr3R:9145229-9145349 1.6e-05 44_[+2]_68 chr2R:25171926-25172046 1.6e-05 44_[+2]_68 chr2L:5416897-5417017 1.6e-05 57_[+2]_55 chr2R:25244735-25244855 1.6e-05 14_[+2]_98 chr3L:10657720-10657840 1.6e-05 12_[+2]_100 chr3L:20696638-20696758 1.6e-05 89_[+2]_23 chr3L:12718516-12718636 1.6e-05 100_[+2]_12 chr2R:18315696-18315816 1.6e-05 84_[+2]_28 chr3L:19025598-19025718 1.6e-05 53_[+2]_59 chr3L:5840581-5840701 1.6e-05 107_[+2]_5 chr3R:6715551-6715671 1.6e-05 97_[+2]_15 chr3L:18851084-18851204 1.6e-05 91_[+2]_21 chr3L:15200714-15200834 1.6e-05 74_[+2]_38 chr2R:12915090-12915210 1.6e-05 60_[+2]_52 chr2R:7487156-7487276 1.6e-05 36_[+2]_76 chr3R:16728149-16728269 1.6e-05 42_[+2]_70 chr3L:18286224-18286344 1.6e-05 85_[+2]_27 chrX:2399532-2399652 1.6e-05 71_[+2]_41 chr3L:18291859-18291979 1.6e-05 97_[+2]_15 chr2L:6240653-6240773 1.6e-05 87_[+2]_25 chr3R:15614073-15614193 1.6e-05 24_[+2]_88 chr3R:30931309-30931429 1.6e-05 66_[+2]_46 chr2R:25236933-25237053 1.6e-05 24_[+2]_88 chr2L:14464146-14464266 2.9e-05 5_[+2]_107 chr3L:13394768-13394888 2.9e-05 46_[+2]_66 chr2L:1709967-1710087 2.9e-05 23_[+2]_89 chrX:19890425-19890545 2.9e-05 24_[+2]_88 chr2L:14477960-14478080 2.9e-05 89_[+2]_23 chr3L:2855951-2856071 2.9e-05 72_[+2]_40 chr2R:6588962-6589082 2.9e-05 46_[+2]_66 chr3L:17463967-17464087 2.9e-05 30_[+2]_82 chr2R:25197507-25197627 2.9e-05 97_[+2]_15 chr3L:10771153-10771273 2.9e-05 105_[+2]_7 chr3L:22430405-22430525 2.9e-05 62_[+2]_50 chr3R:27197186-27197306 4.2e-05 89_[+2]_23 chr2R:15356262-15356382 4.2e-05 15_[+2]_97 chr3R:21534814-21534934 4.2e-05 60_[+2]_52 chr3L:18294837-18294957 4.2e-05 94_[+2]_18 chr2L:18983004-18983124 5.6e-05 64_[+2]_48 chr2L:21854152-21854272 5.6e-05 93_[+2]_19 chr3R:12256820-12256940 5.6e-05 62_[+2]_50 chr2R:13568619-13568739 5.6e-05 82_[+2]_30 chr3R:19798669-19798789 6.9e-05 36_[+2]_76 chr2R:6579121-6579241 6.9e-05 40_[+2]_72 chr3R:14005981-14006101 6.9e-05 76_[+2]_36 chrX:17336209-17336329 8e-05 96_[+2]_16 chr2R:25212935-25213055 8e-05 17_[+2]_95 chr3L:10770195-10770315 8e-05 89_[+2]_23 chr2L:14479793-14479913 9.4e-05 60_[+2]_52 chr2R:25210344-25210464 9.4e-05 62_[+2]_50 chr3L:15638621-15638741 0.00014 35_[+2]_77 chr2L:7272964-7273084 0.00014 14_[+2]_98 chr3R:30223112-30223232 0.00014 25_[+2]_87 chr2R:25218047-25218167 0.00014 73_[+2]_39 chr2R:21045298-21045418 0.00017 52_[+2]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGGTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAGGGTT width=8 seqs=69 chr2L:5891766-5891886 ( 67) AAAGGGTT 1 chr2R:20044947-20045067 ( 47) AAAGGGTT 1 chrX:4560543-4560663 ( 73) AAAGGGTT 1 chr3L:6945650-6945770 ( 47) AAAGGGTT 1 chr2L:14481995-14482115 ( 43) AAAGGGTT 1 chrX:9759574-9759694 ( 101) AAAGGGTT 1 chr2L:3775558-3775678 ( 1) AAAGGGTT 1 chr2R:13562329-13562449 ( 49) AAAGGGTT 1 chrX:2139628-2139748 ( 100) AAAGGGTT 1 chrX:603566-603686 ( 51) AAAGGGTT 1 chrX:15689941-15690061 ( 11) AAAGGGTT 1 chrX:7230297-7230417 ( 110) AAAGGGTT 1 chr3L:10999858-10999978 ( 27) AAAGGGTT 1 chr3L:12727178-12727298 ( 39) AAAGGGTT 1 chr3R:9145229-9145349 ( 45) AAAGGGTT 1 chr2R:25171926-25172046 ( 45) AAAGGGTT 1 chr2L:5416897-5417017 ( 58) AAAGGGTT 1 chr2R:25244735-25244855 ( 15) AAAGGGTT 1 chr3L:10657720-10657840 ( 13) AAAGGGTT 1 chr3L:20696638-20696758 ( 90) AAAGGGTT 1 chr3L:12718516-12718636 ( 101) AAAGGGTT 1 chr2R:18315696-18315816 ( 85) AAAGGGTT 1 chr3L:19025598-19025718 ( 54) AAAGGGTT 1 chr3L:5840581-5840701 ( 108) AAAGGGTT 1 chr3R:6715551-6715671 ( 98) AAAGGGTT 1 chr3L:18851084-18851204 ( 92) AAAGGGTT 1 chr3L:15200714-15200834 ( 75) AAAGGGTT 1 chr2R:12915090-12915210 ( 61) AAAGGGTT 1 chr2R:7487156-7487276 ( 37) AAAGGGTT 1 chr3R:16728149-16728269 ( 43) AAAGGGTT 1 chr3L:18286224-18286344 ( 86) AAAGGGTT 1 chrX:2399532-2399652 ( 72) AAAGGGTT 1 chr3L:18291859-18291979 ( 98) AAAGGGTT 1 chr2L:6240653-6240773 ( 88) AAAGGGTT 1 chr3R:15614073-15614193 ( 25) AAAGGGTT 1 chr3R:30931309-30931429 ( 67) AAAGGGTT 1 chr2R:25236933-25237053 ( 25) AAAGGGTT 1 chr2L:14464146-14464266 ( 6) AAAGGGGT 1 chr3L:13394768-13394888 ( 47) AAAGGGGT 1 chr2L:1709967-1710087 ( 24) AAAGGGGT 1 chrX:19890425-19890545 ( 25) AAAGGGGT 1 chr2L:14477960-14478080 ( 90) AAAGGGGT 1 chr3L:2855951-2856071 ( 73) AAAGGGGT 1 chr2R:6588962-6589082 ( 47) AAAGGGGT 1 chr3L:17463967-17464087 ( 31) AAAGGGGT 1 chr2R:25197507-25197627 ( 98) AAAGGGGT 1 chr3L:10771153-10771273 ( 106) AAAGGGGT 1 chr3L:22430405-22430525 ( 63) AAAGGGGT 1 chr3R:27197186-27197306 ( 90) GAAGGGTT 1 chr2R:15356262-15356382 ( 16) GAAGGGTT 1 chr3R:21534814-21534934 ( 61) GAAGGGTT 1 chr3L:18294837-18294957 ( 95) GAAGGGTT 1 chr2L:18983004-18983124 ( 65) AAGGGGTT 1 chr2L:21854152-21854272 ( 94) AAGGGGTT 1 chr3R:12256820-12256940 ( 63) AAGGGGTT 1 chr2R:13568619-13568739 ( 83) AAGGGGTT 1 chr3R:19798669-19798789 ( 37) AAAGGGTC 1 chr2R:6579121-6579241 ( 41) AAAGGGTC 1 chr3R:14005981-14006101 ( 77) AAAGGGTC 1 chrX:17336209-17336329 ( 97) GAAGGGGT 1 chr2R:25212935-25213055 ( 18) GAAGGGGT 1 chr3L:10770195-10770315 ( 90) GAAGGGGT 1 chr2L:14479793-14479913 ( 61) AAAGGGCT 1 chr2R:25210344-25210464 ( 63) AAAGGGCT 1 chr3L:15638621-15638741 ( 36) AAATGGTT 1 chr2L:7272964-7273084 ( 15) AAATGGTT 1 chr3R:30223112-30223232 ( 26) AAAGTGTT 1 chr2R:25218047-25218167 ( 74) AAAGTGTT 1 chr2R:21045298-21045418 ( 53) AGAGGGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGGTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.48383 E= 1.2e-059 174 -1275 -113 -1275 188 -1275 -394 -1275 181 -1275 -194 -1275 -1275 -1275 213 -326 -1275 -1275 213 -326 -1275 -1275 217 -1275 -1275 -300 -13 147 -1275 -242 -1275 179 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGGTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 1.2e-059 0.898551 0.000000 0.101449 0.000000 0.985507 0.000000 0.014493 0.000000 0.942029 0.000000 0.057971 0.000000 0.000000 0.000000 0.971014 0.028986 0.000000 0.000000 0.971014 0.028986 0.000000 0.000000 1.000000 0.000000 0.000000 0.028986 0.202899 0.768116 0.000000 0.043478 0.000000 0.956522 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGGTT MEME-2 regular expression -------------------------------------------------------------------------------- AAAGGG[TG]T -------------------------------------------------------------------------------- Time 13.54 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACA MEME-3 width = 8 sites = 30 llr = 259 E-value = 1.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :8292a:a pos.-specific C a17:8:a: probability G :1:::::: matrix T ::11:::: bits 2.2 * 2.0 * ** 1.7 * *** 1.5 * * *** Relative 1.3 * ***** Entropy 1.1 ** ***** (12.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9469195-9469315 63 1.49e-05 gaaacacact cacacaca gacaGAGAGG chr2R:19893561-19893681 27 1.49e-05 AAAAATTGCA CACACACA AAATGCTCAG chr3L:18291077-18291197 99 1.49e-05 AACCCTTAAC CACACACA GAGGCACATC chr3L:10323086-10323206 54 1.49e-05 CTGGcactca cacacaca cgcacacaGC chr3L:15225067-15225187 11 1.49e-05 GTTAAacaca cacacaca cgcacacGGC chr3L:5856035-5856155 76 1.49e-05 cgcacacaca cacacaca cacacacaca chr2R:6588962-6589082 95 1.49e-05 CACTTACCCT CACACACA GGCACTGGGG chr3L:15200714-15200834 48 1.49e-05 AAATTAGACG CACACACA TGTGACCATG chr2L:5935457-5935577 61 1.49e-05 cacacacgca cacacaca caTGGTTTGT chr3L:13737462-13737582 51 1.49e-05 ctcacacaca cacacaca cccccacaca chr3L:14664555-14664675 9 6.24e-05 GTTCTGCC CCCACACA GAATAGAACC chr3L:12650419-12650539 110 6.24e-05 GGAAAACAAA CAAACACA TGT chr3L:13058968-13059088 21 6.24e-05 CCAACCGCAA CAAACACA GGAAGCGGGA chr2R:22548923-22549043 87 6.24e-05 TTAACTAATG CACAAACA ACTAGGGGAG chr3R:8887235-8887355 59 6.24e-05 ATTACAAGTA CAAACACA AGCCAAGAAC chr3L:22130822-22130942 37 6.24e-05 TGATTGGCCA CACAAACA CGCAACTACT chr2R:25218047-25218167 87 6.24e-05 GTGTTTGTTT CCCACACA TGAAAAATGA chr2R:25202606-25202726 80 6.24e-05 CAGCATCAGG CACAAACA ATCAAATAAA chr3L:6945650-6945770 73 8.03e-05 AAAAGTATAG CATACACA AAGGCGCCAT chr2L:250048-250168 19 8.03e-05 GGCACAAATA CATACACA AAATGTATGC chr3R:24597407-24597527 43 9.26e-05 ACTCACAAAT CGCACACA ATGTAATTCA chr2L:3599633-3599753 56 9.26e-05 TTGCGTGCGG CGCACACA ACAAATAAAC chr2L:15326004-15326124 16 1.08e-04 GAACCACGCC CACTCACA GCCCTCGAAA chr3L:18294837-18294957 77 1.08e-04 GACATGTGCA CACTCACA TGTCCCGACT chr3L:22385240-22385360 51 1.71e-04 ATCAATCATA CAAAAACA TTCTACATAT chr3L:14166042-14166162 13 1.71e-04 CGAGCGTAAA CAAAAACA ATATCAAACA chr4:810493-810613 106 1.71e-04 ACAACATACG CCCAAACA TCAACAA chr2L:15470653-15470773 41 1.71e-04 ATATCCCGGA CACACCCA ATAAATTTCG chrX:2983190-2983310 94 1.88e-04 TGGTTGTTGC AACACACA CCTAGCGAAA chr2R:25244735-25244855 80 2.24e-04 AGAAAACAAC CCTACACA AATTATATGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9469195-9469315 1.5e-05 62_[+3]_50 chr2R:19893561-19893681 1.5e-05 26_[+3]_86 chr3L:18291077-18291197 1.5e-05 98_[+3]_14 chr3L:10323086-10323206 1.5e-05 53_[+3]_59 chr3L:15225067-15225187 1.5e-05 10_[+3]_102 chr3L:5856035-5856155 1.5e-05 75_[+3]_37 chr2R:6588962-6589082 1.5e-05 94_[+3]_18 chr3L:15200714-15200834 1.5e-05 47_[+3]_65 chr2L:5935457-5935577 1.5e-05 60_[+3]_52 chr3L:13737462-13737582 1.5e-05 50_[+3]_62 chr3L:14664555-14664675 6.2e-05 8_[+3]_104 chr3L:12650419-12650539 6.2e-05 109_[+3]_3 chr3L:13058968-13059088 6.2e-05 20_[+3]_92 chr2R:22548923-22549043 6.2e-05 86_[+3]_26 chr3R:8887235-8887355 6.2e-05 58_[+3]_54 chr3L:22130822-22130942 6.2e-05 36_[+3]_76 chr2R:25218047-25218167 6.2e-05 86_[+3]_26 chr2R:25202606-25202726 6.2e-05 79_[+3]_33 chr3L:6945650-6945770 8e-05 72_[+3]_40 chr2L:250048-250168 8e-05 18_[+3]_94 chr3R:24597407-24597527 9.3e-05 42_[+3]_70 chr2L:3599633-3599753 9.3e-05 55_[+3]_57 chr2L:15326004-15326124 0.00011 15_[+3]_97 chr3L:18294837-18294957 0.00011 76_[+3]_36 chr3L:22385240-22385360 0.00017 50_[+3]_62 chr3L:14166042-14166162 0.00017 12_[+3]_100 chr4:810493-810613 0.00017 105_[+3]_7 chr2L:15470653-15470773 0.00017 40_[+3]_72 chrX:2983190-2983310 0.00019 93_[+3]_19 chr2R:25244735-25244855 0.00022 79_[+3]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACA width=8 seqs=30 chr3L:9469195-9469315 ( 63) CACACACA 1 chr2R:19893561-19893681 ( 27) CACACACA 1 chr3L:18291077-18291197 ( 99) CACACACA 1 chr3L:10323086-10323206 ( 54) CACACACA 1 chr3L:15225067-15225187 ( 11) CACACACA 1 chr3L:5856035-5856155 ( 76) CACACACA 1 chr2R:6588962-6589082 ( 95) CACACACA 1 chr3L:15200714-15200834 ( 48) CACACACA 1 chr2L:5935457-5935577 ( 61) CACACACA 1 chr3L:13737462-13737582 ( 51) CACACACA 1 chr3L:14664555-14664675 ( 9) CCCACACA 1 chr3L:12650419-12650539 ( 110) CAAACACA 1 chr3L:13058968-13059088 ( 21) CAAACACA 1 chr2R:22548923-22549043 ( 87) CACAAACA 1 chr3R:8887235-8887355 ( 59) CAAACACA 1 chr3L:22130822-22130942 ( 37) CACAAACA 1 chr2R:25218047-25218167 ( 87) CCCACACA 1 chr2R:25202606-25202726 ( 80) CACAAACA 1 chr3L:6945650-6945770 ( 73) CATACACA 1 chr2L:250048-250168 ( 19) CATACACA 1 chr3R:24597407-24597527 ( 43) CGCACACA 1 chr2L:3599633-3599753 ( 56) CGCACACA 1 chr2L:15326004-15326124 ( 16) CACTCACA 1 chr3L:18294837-18294957 ( 77) CACTCACA 1 chr3L:22385240-22385360 ( 51) CAAAAACA 1 chr3L:14166042-14166162 ( 13) CAAAAACA 1 chr4:810493-810613 ( 106) CCCAAACA 1 chr2L:15470653-15470773 ( 41) CACACCCA 1 chrX:2983190-2983310 ( 94) AACACACA 1 chr2R:25244735-25244855 ( 80) CCTACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1531 E= 1.8e+004 -300 206 -1155 -1155 158 -80 -174 -1155 -69 166 -1155 -147 180 -1155 -1155 -206 -42 178 -1155 -1155 185 -280 -1155 -1155 -1155 211 -1155 -1155 190 -1155 -1155 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 1.8e+004 0.033333 0.966667 0.000000 0.000000 0.800000 0.133333 0.066667 0.000000 0.166667 0.733333 0.000000 0.100000 0.933333 0.000000 0.000000 0.066667 0.200000 0.800000 0.000000 0.000000 0.966667 0.033333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-3 regular expression -------------------------------------------------------------------------------- CACA[CA]ACA -------------------------------------------------------------------------------- Time 19.52 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCCARM MEME-4 width = 8 sites = 16 llr = 154 E-value = 2.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCCARM MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::a45 pos.-specific C :::aa::3 probability G :aa:::62 matrix T a::::::: bits 2.2 **** 2.0 ****** 1.7 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ******* (13.9 bits) 0.9 ******* 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGCCAGA consensus AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCARM MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:19798669-19798789 52 1.17e-05 GTCAACCTGT TGGCCAGA TTACACTGGG chr3L:14135684-14135804 98 1.17e-05 ATGAATCgaa tggccaga atggtcagaa chr3L:10999858-10999978 92 1.17e-05 TGTCTGTGGG TGGCCAGA CAGCACCACC chr2L:1709967-1710087 97 2.19e-05 ATTTTTGTGT TGGCCAGC AGCGGACGCT chr2L:7272964-7273084 39 2.19e-05 GGTGTGGAAG TGGCCAGC TCAATGGGGA chr3L:5856035-5856155 19 2.19e-05 AACCCCTTGA TGGCCAGC CGAAGAACGG chr3L:10770195-10770315 33 2.19e-05 CATAAAAATG TGGCCAGC GGCACTCGAG chr2L:3609084-3609204 92 3.60e-05 TGTCAACACA TGGCCAAA AGGATTAGCC chr2L:15480952-15481072 56 3.60e-05 CGCGGCACAA TGGCCAAA TACAGTGGAG chr2R:15894369-15894489 105 3.60e-05 GAAGTCAGCG TGGCCAAA GTCAAACA chr2R:6588962-6589082 35 3.60e-05 GAACTCCTTG TGGCCAAA ACACAAAGGG chr2L:5871434-5871554 6 3.60e-05 TGGAA TGGCCAAA GTTCGGAGGT chr3L:13058968-13059088 8 5.80e-05 TGTTCCA TGGCCAAC CGCAACAAAC chrX:15692339-15692459 54 5.80e-05 CAATCCCCGC TGGCCAGG AGCAAACCAC chr2R:19589948-19590068 21 5.80e-05 CATTGACAAG TGGCCAGG AGGTGTCACA chr4:810493-810613 28 6.97e-05 AGTAAGCGGA TGGCCAAG GGTATTTGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCARM MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:19798669-19798789 1.2e-05 51_[+4]_61 chr3L:14135684-14135804 1.2e-05 97_[+4]_15 chr3L:10999858-10999978 1.2e-05 91_[+4]_21 chr2L:1709967-1710087 2.2e-05 96_[+4]_16 chr2L:7272964-7273084 2.2e-05 38_[+4]_74 chr3L:5856035-5856155 2.2e-05 18_[+4]_94 chr3L:10770195-10770315 2.2e-05 32_[+4]_80 chr2L:3609084-3609204 3.6e-05 91_[+4]_21 chr2L:15480952-15481072 3.6e-05 55_[+4]_57 chr2R:15894369-15894489 3.6e-05 104_[+4]_8 chr2R:6588962-6589082 3.6e-05 34_[+4]_78 chr2L:5871434-5871554 3.6e-05 5_[+4]_107 chr3L:13058968-13059088 5.8e-05 7_[+4]_105 chrX:15692339-15692459 5.8e-05 53_[+4]_59 chr2R:19589948-19590068 5.8e-05 20_[+4]_92 chr4:810493-810613 7e-05 27_[+4]_85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCARM MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCCARM width=8 seqs=16 chr3R:19798669-19798789 ( 52) TGGCCAGA 1 chr3L:14135684-14135804 ( 98) TGGCCAGA 1 chr3L:10999858-10999978 ( 92) TGGCCAGA 1 chr2L:1709967-1710087 ( 97) TGGCCAGC 1 chr2L:7272964-7273084 ( 39) TGGCCAGC 1 chr3L:5856035-5856155 ( 19) TGGCCAGC 1 chr3L:10770195-10770315 ( 33) TGGCCAGC 1 chr2L:3609084-3609204 ( 92) TGGCCAAA 1 chr2L:15480952-15481072 ( 56) TGGCCAAA 1 chr2R:15894369-15894489 ( 105) TGGCCAAA 1 chr2R:6588962-6589082 ( 35) TGGCCAAA 1 chr2L:5871434-5871554 ( 6) TGGCCAAA 1 chr3L:13058968-13059088 ( 8) TGGCCAAC 1 chrX:15692339-15692459 ( 54) TGGCCAGG 1 chr2R:19589948-19590068 ( 21) TGGCCAGG 1 chr4:810493-810613 ( 28) TGGCCAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCARM MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7851 E= 2.4e+004 -1064 -1064 -1064 185 -1064 -1064 217 -1064 -1064 -1064 217 -1064 -1064 211 -1064 -1064 -1064 211 -1064 -1064 190 -1064 -1064 -1064 71 -1064 134 -1064 90 43 -24 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCARM MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.4e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.437500 0.000000 0.562500 0.000000 0.500000 0.312500 0.187500 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCARM MEME-4 regular expression -------------------------------------------------------------------------------- TGGCCA[GA][AC] -------------------------------------------------------------------------------- Time 25.44 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGAGGG MEME-5 width = 8 sites = 2 llr = 24 E-value = 5.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C :::::::: probability G aaaa:aaa matrix T :::::::: bits 2.2 **** *** 2.0 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGGAGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14005981-14006101 90 7.12e-06 GGGTCACAAG GGGGAGGG GATAAACGCG chr2L:12675607-12675727 74 7.12e-06 TTTTGTCTTC GGGGAGGG TGAGAAAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14005981-14006101 7.1e-06 89_[+5]_23 chr2L:12675607-12675727 7.1e-06 73_[+5]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGAGGG width=8 seqs=2 chr3R:14005981-14006101 ( 90) GGGGAGGG 1 chr2L:12675607-12675727 ( 74) GGGGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 5.8e+004 -765 -765 216 -765 -765 -765 216 -765 -765 -765 216 -765 -765 -765 216 -765 189 -765 -765 -765 -765 -765 216 -765 -765 -765 216 -765 -765 -765 216 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.8e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 regular expression -------------------------------------------------------------------------------- GGGGAGGG -------------------------------------------------------------------------------- Time 31.33 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18355500-18355620 4.35e-01 120 chr2R:25202606-25202726 8.46e-03 28_[+1(1.91e-05)]_43_[+3(6.24e-05)]_\ 12_[+1(1.91e-05)]_13 chr2R:25210344-25210464 1.83e-02 37_[+1(3.50e-05)]_17_[+2(9.37e-05)]_\ 50 chr3L:19152969-19153089 5.17e-01 120 chr2R:25195204-25195324 8.14e-01 120 chr3L:22430405-22430525 1.41e-02 62_[+2(2.91e-05)]_50 chr2L:19204186-19204306 4.94e-02 50_[+1(1.91e-05)]_62 chrX:7603279-7603399 1.67e-01 18_[+1(1.91e-05)]_40_[+1(3.50e-05)]_\ 46 chr2R:25192349-25192469 7.96e-02 120 chr3L:13737462-13737582 1.15e-01 42_[+3(1.49e-05)]_[+3(1.49e-05)]_4_\ [+3(1.49e-05)]_[+3(1.49e-05)]_42 chr2R:15049473-15049593 1.90e-01 120 chr2R:25207450-25207570 2.49e-01 120 chrX:15659008-15659128 6.03e-03 120 chr3L:13082894-13083014 3.72e-02 22_[+1(5.78e-05)]_90 chr2R:25236933-25237053 4.89e-04 3_[+1(3.50e-05)]_13_[+2(1.62e-05)]_\ 88 chr3R:30931309-30931429 2.86e-02 66_[+2(1.62e-05)]_46 chr2R:25243436-25243556 5.33e-01 120 chr3L:18302144-18302264 2.45e-02 75_[+1(1.91e-05)]_37 chr2L:5871434-5871554 7.09e-02 5_[+4(3.60e-05)]_107 chr3R:30920824-30920944 2.64e-03 26_[+1(1.91e-05)]_86 chr3R:15614073-15614193 9.34e-03 24_[+2(1.62e-05)]_88 chr2L:6240653-6240773 5.47e-02 87_[+2(1.62e-05)]_25 chr3L:15758827-15758947 3.63e-02 57_[+1(1.91e-05)]_55 chr2L:5935457-5935577 3.48e-02 58_[+3(1.49e-05)]_54 chr3L:16473726-16473846 1.37e-01 25_[+1(1.91e-05)]_87 chr3L:18291859-18291979 1.37e-01 97_[+2(1.62e-05)]_15 chr2R:16376734-16376854 1.19e-03 85_[+1(1.91e-05)]_27 chr2R:25218047-25218167 5.04e-04 [+1(5.78e-05)]_78_[+3(6.24e-05)]_26 chr3L:419870-419990 2.02e-01 120 chr3L:10771153-10771273 1.04e-02 105_[+2(2.91e-05)]_7 chrX:10808033-10808153 9.81e-01 120 chr2R:13568619-13568739 1.18e-01 82_[+2(5.59e-05)]_30 chr2L:13868521-13868641 1.13e-01 17_[+1(3.50e-05)]_95 chr3L:18294837-18294957 2.41e-03 94_[+2(4.25e-05)]_18 chr2R:25208717-25208837 9.09e-01 120 chr2L:7311933-7312053 3.58e-01 120 chr2R:25134924-25135044 1.69e-02 54_[+1(1.91e-05)]_32_[+1(7.68e-05)]_\ 18 chr2L:14273651-14273771 2.15e-01 120 chr2R:25234213-25234333 3.70e-02 120 chrX:2399532-2399652 1.62e-02 71_[+2(1.62e-05)]_21_[+2(2.91e-05)]_\ 12 chr2R:25197039-25197159 9.19e-01 120 chr3L:18286224-18286344 2.16e-02 85_[+2(1.62e-05)]_27 chr3R:16728149-16728269 2.00e-02 42_[+2(1.62e-05)]_70 chr3L:13557258-13557378 1.33e-01 120 chr2R:7487156-7487276 1.05e-01 36_[+2(1.62e-05)]_76 chr3L:18278473-18278593 8.24e-01 120 chrX:15691332-15691452 1.11e-01 53_[+1(1.91e-05)]_59 chr3L:5983697-5983817 1.86e-01 50_[+1(1.91e-05)]_62 chr2R:12915090-12915210 1.28e-03 51_[+5(7.12e-06)]_1_[+2(1.62e-05)]_\ 52 chrX:7190454-7190574 2.05e-01 120 chr3L:5979588-5979708 2.07e-02 53_[+1(5.78e-05)]_59 chrX:16203668-16203788 4.58e-01 120 chr3L:14105134-14105254 5.98e-01 120 chr3R:22234220-22234340 2.10e-01 120 chr3L:15200714-15200834 1.36e-04 47_[+3(1.49e-05)]_19_[+2(1.62e-05)]_\ 38 chr3L:14181377-14181497 1.86e-01 120 chr3L:20643946-20644066 3.25e-02 71_[+1(1.91e-05)]_41 chrX:7252274-7252394 7.89e-02 52_[+1(1.91e-05)]_60 chrX:2983190-2983310 1.52e-01 120 chr2R:19589948-19590068 8.38e-02 20_[+4(5.80e-05)]_92 chr3R:21534814-21534934 5.25e-03 60_[+2(4.25e-05)]_52 chr2L:9486409-9486529 5.84e-01 120 chr3L:18350807-18350927 6.76e-01 120 chr2L:11352995-11353115 5.38e-02 107_[+1(3.50e-05)]_5 chr3L:18851084-18851204 6.33e-02 91_[+2(1.62e-05)]_21 chr2R:11604400-11604520 2.72e-02 41_[+1(5.78e-05)]_71 chr2L:7590473-7590593 6.08e-01 120 chr2L:7624615-7624735 2.96e-01 120 chr3R:6715551-6715671 1.05e-02 97_[+2(1.62e-05)]_15 chr3L:5840581-5840701 7.30e-04 107_[+2(1.62e-05)]_5 chr2L:1412079-1412199 1.73e-01 34_[+1(1.91e-05)]_78 chr3L:18290150-18290270 1.54e-02 85_[+1(3.50e-05)]_27 chr2L:19333342-19333462 2.14e-02 64_[+1(1.91e-05)]_48 chr3L:19025598-19025718 2.04e-02 53_[+2(1.62e-05)]_59 chrX:18529951-18530071 9.98e-02 45_[+1(1.91e-05)]_67 chr2R:8244687-8244807 3.06e-01 120 chr3L:22130822-22130942 1.28e-03 36_[+3(6.24e-05)]_76 chr2L:15454915-15455035 5.58e-02 38_[+1(3.50e-05)]_74 chr2L:3599633-3599753 2.76e-01 55_[+3(9.26e-05)]_57 chr3R:15579811-15579931 8.08e-01 120 chr2L:13591421-13591541 1.54e-01 68_[+1(7.68e-05)]_44 chr2R:25242099-25242219 2.82e-01 120 chr2R:25212734-25212854 1.50e-01 120 chr2L:6541549-6541669 1.25e-01 33_[+1(1.91e-05)]_12_[+1(1.91e-05)]_\ 59 chr3L:10770195-10770315 4.12e-03 32_[+4(2.19e-05)]_49_[+2(8.01e-05)]_\ 23 chrX:15818952-15819072 1.65e-02 50_[+1(1.91e-05)]_62 chr2R:18315696-18315816 3.65e-02 84_[+2(1.62e-05)]_28 chr3L:15289397-15289517 5.47e-01 120 chr2R:25197507-25197627 7.92e-03 97_[+2(2.91e-05)]_15 chr3L:17463967-17464087 7.10e-03 30_[+2(2.91e-05)]_82 chr3R:8887235-8887355 1.18e-02 10_[+1(1.91e-05)]_40_[+3(6.24e-05)]_\ 54 chr2L:14482285-14482405 3.31e-01 120 chrX:15692339-15692459 2.26e-01 53_[+4(5.80e-05)]_59 chr3L:12718516-12718636 4.16e-02 100_[+2(1.62e-05)]_12 chr3L:20696638-20696758 7.04e-04 31_[+1(1.91e-05)]_22_[+1(1.91e-05)]_\ 20_[+2(1.62e-05)]_23 chr3R:5031081-5031201 4.69e-01 120 chr3L:10657720-10657840 7.75e-02 12_[+2(1.62e-05)]_100 chr2R:25244735-25244855 1.88e-02 14_[+2(1.62e-05)]_98 chr3R:15612392-15612512 1.47e-03 28_[+1(1.91e-05)]_84 chr2R:25192554-25192674 9.18e-01 120 chr3R:8701404-8701524 4.59e-02 104_[+1(1.91e-05)]_8 chr2L:12675607-12675727 1.69e-02 73_[+5(7.12e-06)]_39 chr2L:15470653-15470773 1.87e-02 68_[+1(5.78e-05)]_44 chr2R:6588962-6589082 1.13e-06 34_[+4(3.60e-05)]_4_[+2(2.91e-05)]_\ 40_[+3(1.49e-05)]_18 chrX:3142163-3142283 1.02e-01 42_[+1(1.91e-05)]_70 chrX:7275405-7275525 1.09e-01 120 chr2L:5416897-5417017 1.51e-01 57_[+2(1.62e-05)]_55 chr2R:25204023-25204143 4.16e-01 120 chr2R:22548923-22549043 7.48e-03 86_[+3(6.24e-05)]_26 chr2R:25200365-25200485 3.74e-02 25_[+1(5.78e-05)]_87 chr3L:2880475-2880595 1.63e-01 120 chr3R:30223112-30223232 4.91e-03 72_[+1(3.50e-05)]_40 chr3R:18991493-18991613 1.92e-02 120 chr2R:25171926-25172046 6.19e-02 44_[+2(1.62e-05)]_68 chr3L:13058968-13059088 2.69e-03 7_[+4(5.80e-05)]_5_[+3(6.24e-05)]_\ 92 chr3L:10860870-10860990 3.28e-01 120 chr3R:21864322-21864442 4.54e-01 120 chr3L:5856035-5856155 6.83e-05 8_[+1(3.50e-05)]_2_[+4(2.19e-05)]_\ 41_[+3(1.49e-05)]_[+3(1.49e-05)]_[+3(1.49e-05)]_29 chr3R:9145229-9145349 8.64e-02 44_[+2(1.62e-05)]_68 chr2L:2453855-2453975 5.25e-01 120 chr3L:12727178-12727298 8.19e-02 38_[+2(1.62e-05)]_74 chr2L:7272964-7273084 8.13e-03 38_[+4(2.19e-05)]_74 chr3L:17362273-17362393 4.08e-01 120 chr3L:15225067-15225187 9.72e-03 6_[+3(1.49e-05)]_106 chr2L:14479793-14479913 6.73e-02 60_[+2(9.37e-05)]_52 chr3R:12256820-12256940 5.49e-02 62_[+2(5.59e-05)]_50 chr2L:4357701-4357821 1.73e-01 120 chr3L:2855951-2856071 4.01e-02 72_[+2(2.91e-05)]_40 chr3L:10999858-10999978 1.30e-03 26_[+2(1.62e-05)]_57_[+4(1.17e-05)]_\ 21 chr3R:30420384-30420504 1.14e-01 22_[+1(1.91e-05)]_90 chr2R:11401417-11401537 7.00e-01 120 chrX:8422525-8422645 3.43e-02 11_[+1(3.50e-05)]_101 chrX:7272854-7272974 3.38e-02 33_[+1(3.50e-05)]_79 chrX:7230297-7230417 2.64e-02 109_[+2(1.62e-05)]_3 chr2L:14477960-14478080 1.54e-01 89_[+2(2.91e-05)]_23 chr3R:24597407-24597527 2.89e-01 42_[+3(9.26e-05)]_70 chr3R:25446819-25446939 2.17e-01 120 chr2L:21854152-21854272 1.01e-01 93_[+2(5.59e-05)]_19 chr3R:15669633-15669753 5.18e-02 104_[+1(1.91e-05)]_8 chrX:15689941-15690061 1.40e-01 10_[+2(1.62e-05)]_102 chrX:19890425-19890545 3.56e-02 24_[+2(2.91e-05)]_88 chr3R:9395361-9395481 3.47e-01 120 chr3L:12729383-12729503 9.37e-01 120 chr3L:20779063-20779183 4.92e-01 120 chr2L:18888853-18888973 1.33e-01 120 chr2L:11345014-11345134 5.41e-02 120 chr4:810493-810613 1.52e-02 27_[+4(6.97e-05)]_85 chr2R:15913001-15913121 1.43e-01 [+1(1.91e-05)]_112 chrX:17812301-17812421 2.59e-01 120 chr3R:22712357-22712477 4.43e-01 120 chr3R:8842619-8842739 4.69e-01 120 chr2R:25212935-25213055 2.64e-01 17_[+2(8.01e-05)]_95 chrX:17496053-17496173 5.11e-01 120 chrX:603566-603686 4.62e-02 50_[+2(1.62e-05)]_62 chr3R:30247818-30247938 8.28e-01 120 chrX:2139628-2139748 3.49e-04 45_[+1(1.91e-05)]_46_[+2(1.62e-05)]_\ 13 chr2R:13562329-13562449 1.30e-01 48_[+2(1.62e-05)]_64 chrX:12265123-12265243 9.90e-02 120 chr3L:12650419-12650539 9.44e-02 109_[+3(6.24e-05)]_3 chr2R:12532046-12532166 3.89e-01 120 chrX:1106270-1106390 1.48e-02 120 chr2R:15894369-15894489 9.48e-03 104_[+4(3.60e-05)]_8 chr2L:14455103-14455223 7.85e-02 40_[+1(3.50e-05)]_72 chr3L:14166042-14166162 4.35e-02 120 chr3R:10353782-10353902 4.50e-02 120 chr2L:14261093-14261213 1.26e-01 102_[+1(1.91e-05)]_10 chr3L:10323086-10323206 1.65e-03 2_[+1(1.91e-05)]_41_[+3(1.49e-05)]_\ 2_[+3(9.26e-05)]_51 chr4:507209-507329 9.38e-01 120 chr3R:12313830-12313950 5.36e-01 120 chr3R:10657304-10657424 8.21e-01 120 chr2L:17747934-17748054 2.48e-01 120 chr3L:12695714-12695834 4.48e-01 120 chr2L:7625441-7625561 1.02e-01 57_[+1(1.91e-05)]_55 chr2L:12672585-12672705 1.23e-02 52_[+1(1.91e-05)]_60 chr3L:22385240-22385360 7.49e-02 120 chr2L:1709967-1710087 1.33e-03 23_[+2(2.91e-05)]_65_[+4(2.19e-05)]_\ 16 chr2L:14267821-14267941 6.34e-01 120 chr2L:9583180-9583300 2.59e-01 120 chr3L:13394768-13394888 2.43e-01 46_[+2(2.91e-05)]_66 chr2L:3775558-3775678 2.09e-01 [+2(1.62e-05)]_112 chrX:9759574-9759694 3.15e-03 100_[+2(1.62e-05)]_12 chr3L:14135684-14135804 1.44e-03 97_[+4(1.17e-05)]_15 chr2R:25204935-25205055 5.66e-01 120 chr3R:26884569-26884689 1.78e-02 120 chr3L:22131024-22131144 4.91e-01 120 chr2L:585179-585299 8.41e-02 27_[+1(3.50e-05)]_4_[+1(3.50e-05)]_\ 73 chr3L:18291077-18291197 5.98e-05 83_[+4(5.80e-05)]_7_[+3(1.49e-05)]_\ 14 chr2L:14481995-14482115 3.21e-03 42_[+2(1.62e-05)]_70 chr3R:14039980-14040100 4.19e-01 120 chr2R:15356262-15356382 2.43e-02 15_[+2(4.25e-05)]_97 chr2L:10003123-10003243 5.72e-03 120 chrX:17336209-17336329 8.04e-02 96_[+2(8.01e-05)]_16 chr2L:20995115-20995235 2.31e-01 120 chrX:17520795-17520915 7.88e-02 120 chr2L:2167392-2167512 5.30e-01 120 chr3L:18219141-18219261 8.55e-01 120 chr3L:7981469-7981589 1.04e-01 39_[+1(1.91e-05)]_73 chr3L:12651691-12651811 2.57e-01 120 chr2R:25216580-25216700 8.54e-01 120 chr2L:15480952-15481072 4.25e-02 55_[+4(3.60e-05)]_57 chr3R:14005981-14006101 1.52e-03 76_[+2(6.94e-05)]_5_[+5(7.12e-06)]_\ 23 chr3R:10617974-10618094 9.23e-01 120 chr3R:30917544-30917664 9.63e-01 120 chr2R:13568819-13568939 9.11e-01 120 chr3R:11781022-11781142 1.07e-01 12_[+1(1.91e-05)]_8_[+1(1.91e-05)]_\ 84 chr3L:9368747-9368867 6.50e-01 120 chr2L:250048-250168 1.59e-01 18_[+3(8.03e-05)]_94 chr3L:6945650-6945770 2.62e-03 46_[+2(1.62e-05)]_18_[+3(8.03e-05)]_\ 40 chr2L:19319866-19319986 6.93e-02 58_[+1(1.91e-05)]_54 chr3L:18833022-18833142 2.84e-03 3_[+1(1.91e-05)]_109 chr3L:6216950-6217070 8.20e-02 120 chrX:2319867-2319987 5.01e-01 120 chr3L:19036515-19036635 4.08e-01 120 chr3L:14664555-14664675 1.71e-01 8_[+3(6.24e-05)]_104 chr3R:13989152-13989272 6.41e-01 120 chrX:7168266-7168386 5.73e-02 120 chr3R:27197186-27197306 5.80e-03 77_[+2(5.59e-05)]_4_[+2(4.25e-05)]_\ 23 chr2R:19893561-19893681 2.82e-02 24_[+3(1.49e-05)]_88 chr2L:14464146-14464266 7.64e-02 5_[+2(2.91e-05)]_107 chr3R:12261255-12261375 6.07e-02 15_[+1(5.78e-05)]_28_[+1(1.91e-05)]_\ 61 chr3R:7139838-7139958 5.88e-03 73_[+1(1.91e-05)]_39 chr3L:9469195-9469315 2.94e-04 21_[+3(1.49e-05)]_15_[+3(6.24e-05)]_\ 10_[+3(1.49e-05)]_20_[+1(1.91e-05)]_22 chr3L:10812137-10812257 8.15e-01 120 chr2R:6579121-6579241 2.08e-02 40_[+2(6.94e-05)]_72 chr3R:19798669-19798789 4.33e-04 36_[+2(6.94e-05)]_7_[+4(1.17e-05)]_\ 61 chr3R:19353290-19353410 9.14e-01 120 chr2L:18927896-18928016 8.25e-01 120 chr3R:23790669-23790789 4.54e-01 120 chrX:4560543-4560663 1.36e-02 72_[+2(1.62e-05)]_40 chr3L:5621073-5621193 1.37e-02 91_[+1(5.78e-05)]_21 chr2R:21045298-21045418 7.94e-02 120 chr2L:14464866-14464986 1.34e-01 120 chr2L:15326004-15326124 3.14e-03 111_[+1(5.78e-05)]_1 chr2L:19339099-19339219 4.62e-01 120 chr2R:20044947-20045067 2.08e-02 46_[+2(1.62e-05)]_66 chr3R:26885496-26885616 6.40e-01 120 chr3L:1916928-1917048 1.85e-01 120 chr2L:18983004-18983124 1.01e-01 64_[+2(5.59e-05)]_48 chr3L:15638621-15638741 9.90e-02 120 chr2L:14450049-14450169 5.12e-01 120 chr3L:15678382-15678502 6.05e-01 120 chr3L:12150883-12151003 5.26e-03 23_[+1(5.78e-05)]_89 chr2L:6216018-6216138 9.93e-01 120 chr2L:6241922-6242042 3.59e-03 56_[+1(3.50e-05)]_56 chr2L:3834032-3834152 3.75e-02 18_[+1(3.50e-05)]_94 chr2L:5891766-5891886 7.70e-02 66_[+2(1.62e-05)]_46 chr3R:6977237-6977357 3.18e-04 71_[+5(2.65e-05)]_41 chr2R:9710603-9710723 5.27e-01 120 chr2L:3609084-3609204 4.14e-02 91_[+4(3.60e-05)]_21 chr2R:12017669-12017789 8.59e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************