******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Jra.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:16179390-16179510 1.0000 120 chrX:1353472-1353592 1.0000 120 chr3R:16280082-16280202 1.0000 120 chr2R:23522565-23522685 1.0000 120 chr3R:6401397-6401517 1.0000 120 chr2R:6563054-6563174 1.0000 120 chr3R:21374052-21374172 1.0000 120 chrX:5621997-5622117 1.0000 120 chrX:8895653-8895773 1.0000 120 chr3L:69468-69588 1.0000 120 chr3R:16626174-16626294 1.0000 120 chrX:15746918-15747038 1.0000 120 chr2R:20603668-20603788 1.0000 120 chr2R:18572911-18573031 1.0000 120 chr2R:25009573-25009693 1.0000 120 chr3R:24039297-24039417 1.0000 120 chr2R:17405110-17405230 1.0000 120 chr3L:8819568-8819688 1.0000 120 chr2R:22399763-22399883 1.0000 120 chr2L:1989414-1989534 1.0000 120 chr3R:28536910-28537030 1.0000 120 chrX:1321173-1321293 1.0000 120 chr2L:7422418-7422538 1.0000 120 chr3L:2493631-2493751 1.0000 120 chr2R:16270757-16270877 1.0000 120 chr2L:9736344-9736464 1.0000 120 chr2R:24685217-24685337 1.0000 120 chr2R:22681092-22681212 1.0000 120 chr3L:22465953-22466073 1.0000 120 chr3L:1321368-1321488 1.0000 120 chr2R:6143581-6143701 1.0000 120 chr3R:4310783-4310903 1.0000 120 chr2L:7418408-7418528 1.0000 120 chr2R:11181926-11182046 1.0000 120 chr3L:4120628-4120748 1.0000 120 chrX:11600926-11601046 1.0000 120 chr3L:14676063-14676183 1.0000 120 chrX:2077285-2077405 1.0000 120 chrX:10364651-10364771 1.0000 120 chr2R:17669361-17669481 1.0000 120 chr2R:21382973-21383093 1.0000 120 chr3R:18924394-18924514 1.0000 120 chr3L:7529363-7529483 1.0000 120 chr3R:16453111-16453231 1.0000 120 chr3R:31743392-31743512 1.0000 120 chrM:161-281 1.0000 120 chr2R:18126287-18126407 1.0000 120 chr3R:17670559-17670679 1.0000 120 chr3L:20404046-20404166 1.0000 120 chrX:8420812-8420932 1.0000 120 chr3L:16613064-16613184 1.0000 120 chr2L:5428948-5429068 1.0000 120 chr3L:9897570-9897690 1.0000 120 chr2L:16889115-16889235 1.0000 120 chr2L:13845288-13845408 1.0000 120 chr2R:10156216-10156336 1.0000 120 chr3R:30809114-30809234 1.0000 120 chr3R:16212334-16212454 1.0000 120 chr2R:10108560-10108680 1.0000 120 chr2R:18411625-18411745 1.0000 120 chr3R:29778813-29778933 1.0000 120 chr2L:7701500-7701620 1.0000 120 chr3R:21741103-21741223 1.0000 120 chrM:12913-13033 1.0000 120 chr3L:5181066-5181186 1.0000 120 chrM:9827-9947 1.0000 120 chr2R:17261896-17262016 1.0000 120 chr3R:11211310-11211430 1.0000 120 chrX:4108980-4109100 1.0000 120 chr2R:10045458-10045578 1.0000 120 chr2R:23981404-23981524 1.0000 120 chr3R:9763015-9763135 1.0000 120 chr2R:5691773-5691893 1.0000 120 chr2R:14182750-14182870 1.0000 120 chr3L:9678312-9678432 1.0000 120 chr2R:11096410-11096530 1.0000 120 chrX:1577230-1577350 1.0000 120 chr3R:5454383-5454503 1.0000 120 chrX:11134027-11134147 1.0000 120 chr2L:8426298-8426418 1.0000 120 chrX:1578423-1578543 1.0000 120 chr2L:1989669-1989789 1.0000 120 chr3R:17684978-17685098 1.0000 120 chr2L:3479744-3479864 1.0000 120 chrX:1622006-1622126 1.0000 120 chr2R:18833976-18834096 1.0000 120 chr2R:12175169-12175289 1.0000 120 chr2R:24981088-24981208 1.0000 120 chr3R:31224220-31224340 1.0000 120 chr2L:5291332-5291452 1.0000 120 chr3L:18683936-18684056 1.0000 120 chr3R:13401783-13401903 1.0000 120 chr3R:5262250-5262370 1.0000 120 chr3L:4107184-4107304 1.0000 120 chr3L:17947362-17947482 1.0000 120 chr3R:4243326-4243446 1.0000 120 chr3L:11218890-11219010 1.0000 120 chr2R:16720084-16720204 1.0000 120 chr3L:174485-174605 1.0000 120 chr2R:9409624-9409744 1.0000 120 chr2L:13641163-13641283 1.0000 120 chr3L:446248-446368 1.0000 120 chr2R:6145738-6145858 1.0000 120 chr3L:17430577-17430697 1.0000 120 chr3L:17614003-17614123 1.0000 120 chrX:8560177-8560297 1.0000 120 chr3R:25518370-25518490 1.0000 120 chr3L:9897309-9897429 1.0000 120 chr3L:18019171-18019291 1.0000 120 chr2R:12917336-12917456 1.0000 120 chrX:10728202-10728322 1.0000 120 chrM:5984-6104 1.0000 120 chr2R:10052178-10052298 1.0000 120 chr3R:14780834-14780954 1.0000 120 chr2R:11595247-11595367 1.0000 120 chr3R:8127345-8127465 1.0000 120 chr3L:11777702-11777822 1.0000 120 chr2L:2873577-2873697 1.0000 120 chr2L:5085013-5085133 1.0000 120 chr3L:20186751-20186871 1.0000 120 chr2L:1117197-1117317 1.0000 120 chrX:17746028-17746148 1.0000 120 chr3R:14481534-14481654 1.0000 120 chr3R:15411136-15411256 1.0000 120 chr3L:16359712-16359832 1.0000 120 chr3R:21112823-21112943 1.0000 120 chr2R:18173682-18173802 1.0000 120 chr2L:7678385-7678505 1.0000 120 chr3L:21011712-21011832 1.0000 120 chrX:12014251-12014371 1.0000 120 chr3L:7154399-7154519 1.0000 120 chr3L:18402430-18402550 1.0000 120 chrM:7084-7204 1.0000 120 chr2R:7013241-7013361 1.0000 120 chr2L:7954726-7954846 1.0000 120 chr3R:27186231-27186351 1.0000 120 chrX:19148301-19148421 1.0000 120 chrX:17879691-17879811 1.0000 120 chr2R:23746138-23746258 1.0000 120 chr3R:22044044-22044164 1.0000 120 chrX:3935143-3935263 1.0000 120 chr3R:23179465-23179585 1.0000 120 chrX:6875830-6875950 1.0000 120 chr2R:8069193-8069313 1.0000 120 chr3R:27129789-27129909 1.0000 120 chrX:1900270-1900390 1.0000 120 chr2L:5904694-5904814 1.0000 120 chr3L:10761045-10761165 1.0000 120 chr3R:18166539-18166659 1.0000 120 chr3L:11627927-11628047 1.0000 120 chrX:7973363-7973483 1.0000 120 chrX:1617014-1617134 1.0000 120 chr3R:16290528-16290648 1.0000 120 chr3R:18914909-18915029 1.0000 120 chrM:2087-2207 1.0000 120 chr2R:9143857-9143977 1.0000 120 chr3R:7089025-7089145 1.0000 120 chr3R:5647776-5647896 1.0000 120 chr2R:12015528-12015648 1.0000 120 chr3L:4411133-4411253 1.0000 120 chrX:17814927-17815047 1.0000 120 chr2L:18981674-18981794 1.0000 120 chr3L:20517463-20517583 1.0000 120 chr3R:10048901-10049021 1.0000 120 chrX:16425276-16425396 1.0000 120 chrX:3718703-3718823 1.0000 120 chr2R:21662076-21662196 1.0000 120 chr2L:1122277-1122397 1.0000 120 chr3L:18013529-18013649 1.0000 120 chrX:1610203-1610323 1.0000 120 chr2R:1522494-1522614 1.0000 120 chr2R:10040595-10040715 1.0000 120 chr2R:6517765-6517885 1.0000 120 chr3R:17404322-17404442 1.0000 120 chr3L:13401155-13401275 1.0000 120 chr2R:14220915-14221035 1.0000 120 chr2R:6023089-6023209 1.0000 120 chr2R:6529989-6530109 1.0000 120 chrX:5904339-5904459 1.0000 120 chr2R:14027197-14027317 1.0000 120 chr2L:18572505-18572625 1.0000 120 chrX:2447859-2447979 1.0000 120 chr3R:29076124-29076244 1.0000 120 chrM:11353-11473 1.0000 120 chr3L:11721640-11721760 1.0000 120 chr3L:3902012-3902132 1.0000 120 chrX:3949850-3949970 1.0000 120 chr3R:5504029-5504149 1.0000 120 chrX:18282450-18282570 1.0000 120 chr3L:8834655-8834775 1.0000 120 chr3R:23993569-23993689 1.0000 120 chr3R:4738804-4738924 1.0000 120 chrX:6544063-6544183 1.0000 120 chr3R:16453315-16453435 1.0000 120 chr2R:9915249-9915369 1.0000 120 chr3R:8116117-8116237 1.0000 120 chr3R:17595218-17595338 1.0000 120 chrX:13285620-13285740 1.0000 120 chr2L:8220689-8220809 1.0000 120 chr2R:9839585-9839705 1.0000 120 chr3L:3252021-3252141 1.0000 120 chr2L:7909863-7909983 1.0000 120 chr3R:18243917-18244037 1.0000 120 chrM:335-455 1.0000 120 chr2R:19179254-19179374 1.0000 120 chr3L:6550586-6550706 1.0000 120 chrX:8215192-8215312 1.0000 120 chr3L:16670342-16670462 1.0000 120 chr2L:19548317-19548437 1.0000 120 chr2R:17452266-17452386 1.0000 120 chr3L:14055879-14055999 1.0000 120 chr3R:4403694-4403814 1.0000 120 chrX:2658561-2658681 1.0000 120 chrX:15812313-15812433 1.0000 120 chr3L:20349450-20349570 1.0000 120 chrX:6021567-6021687 1.0000 120 chr3L:13488416-13488536 1.0000 120 chrX:6255495-6255615 1.0000 120 chr2R:9746339-9746459 1.0000 120 chr2R:13941079-13941199 1.0000 120 chrX:16598518-16598638 1.0000 120 chr3L:16037962-16038082 1.0000 120 chr2L:8126941-8127061 1.0000 120 chr2L:3791648-3791768 1.0000 120 chr3R:22424211-22424331 1.0000 120 chr2L:5294632-5294752 1.0000 120 chr3R:22491387-22491507 1.0000 120 chr3R:17059113-17059233 1.0000 120 chr3R:12628673-12628793 1.0000 120 chr3L:8652820-8652940 1.0000 120 chr3L:17577770-17577890 1.0000 120 chr2L:5983303-5983423 1.0000 120 chr2R:10211301-10211421 1.0000 120 chr2R:9133527-9133647 1.0000 120 chr2L:20794017-20794137 1.0000 120 chr3L:17922901-17923021 1.0000 120 chr2R:22179647-22179767 1.0000 120 chrX:12744355-12744475 1.0000 120 chr3R:22462223-22462343 1.0000 120 chr2L:8095277-8095397 1.0000 120 chr2R:22657629-22657749 1.0000 120 chr2L:6643562-6643682 1.0000 120 chr3R:20585754-20585874 1.0000 120 chr2L:634268-634388 1.0000 120 chr2R:6749286-6749406 1.0000 120 chrM:12131-12251 1.0000 120 chr3R:20765798-20765918 1.0000 120 chr2R:18330073-18330193 1.0000 120 chrM:13219-13339 1.0000 120 chr2R:12876574-12876694 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Jra/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Jra.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.279 C 0.217 G 0.219 T 0.285 Background letter frequencies (from file dataset with add-one prior applied): A 0.279 C 0.217 G 0.219 T 0.285 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGASTCAY MEME-1 width = 8 sites = 110 llr = 837 E-value = 5.7e-044 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::91:1a1 pos.-specific C ::13:9:3 probability G :9:5:::1 matrix T a1:2a::5 bits 2.2 2.0 1.8 ** *** 1.5 ** *** Relative 1.3 *** *** Entropy 1.1 *** *** (11.0 bits) 0.9 *** *** 0.7 *** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGAGTCAT consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:7089025-7089145 81 1.88e-05 TCTGGGACGA TGAGTCAT TCCTTTCGGG chr3L:18402430-18402550 57 1.88e-05 ATTCTCGGGA TGAGTCAT ACCGCGAACA chr3R:8127345-8127465 52 1.88e-05 TGACTTATTA TGAGTCAT GTGAATTCGA chr3L:11218890-11219010 43 1.88e-05 GCTGTGGAGC TGAGTCAT CCACAACCAC chr3R:5262250-5262370 66 1.88e-05 CCAATCCGGC TGAGTCAT CATCAACCCC chrX:4108980-4109100 99 1.88e-05 tgcgtgCCTT TGAGTCAT CGTTATCGCC chr3R:29778813-29778933 66 1.88e-05 AAAACGGCGA TGAGTCAT CCGCACTGCG chr2R:10156216-10156336 27 1.88e-05 GTTCGCTCTA TGAGTCAT ATCTTATCTT chr3R:16453111-16453231 1 1.88e-05 . TGAGTCAT AAACACATGC chrX:2077285-2077405 97 1.88e-05 CCAGAGACGA TGAGTCAT CTGTTGATTA chr2L:7418408-7418528 9 1.88e-05 GAGAGTCT TGAGTCAT ACATTTACAT chr2R:22399763-22399883 65 1.88e-05 AGAGCAAGAG TGAGTCAT CTGGGTCCAA chr3R:24039297-24039417 25 1.88e-05 GAATGCTCAA TGAGTCAT CGCCCGCTGT chr2R:18572911-18573031 52 1.88e-05 TTCGACAGGA TGAGTCAT TTCCATATTG chr3R:12628673-12628793 107 3.30e-05 TGTCACGGCT TGAGTCAC GGAAAT chrX:8215192-8215312 77 3.30e-05 ACCTCTGCGT TGAGTCAC GTATCCACAC chr3L:17614003-17614123 29 3.30e-05 TTAATCAAGG TGAGTCAC CTTGGCCTTA chr3R:11211310-11211430 79 3.30e-05 CACCACCGTC TGAGTCAC AGACTTCAGT chr3L:22465953-22466073 43 3.30e-05 CGCGGATTTG TGAGTCAC TGGGCGAGAA chrX:1321173-1321293 84 3.30e-05 GAAACGTGAG TGAGTCAC TCCCCAAAGT chr2R:25009573-25009693 44 3.30e-05 CCCTCGGAGG TGAGTCAC TGAGTCGAAG chr3R:16280082-16280202 53 3.30e-05 CACTGCTGTA TGAGTCAC TCCCTCACTC chr2R:22657629-22657749 88 5.16e-05 ATCAAACAAG TGACTCAT CTGTCGCCTA chr2R:13941079-13941199 63 5.16e-05 CGGTTGTTCG TGACTCAT GAAAAGGAGC chrX:6544063-6544183 65 5.16e-05 CCTGCGATGA TGACTCAT TGGCCATGAA chrX:7973363-7973483 50 5.16e-05 CTGTGCCTGC TGACTCAT GTGTCCCCTT chrX:3935143-3935263 65 5.16e-05 TCGGTTTGGG TGACTCAT TAATTGGGGG chr2L:7678385-7678505 15 5.16e-05 ATCAATCACA TGACTCAT GGGCAGGGTC chr2L:13641163-13641283 78 5.16e-05 TATACAAGAC TGACTCAT TTTCGTTGAT chr2R:16270757-16270877 49 5.16e-05 TTTGCGTGCA TGACTCAT TGGCGCGCGG chr2R:6563054-6563174 78 5.16e-05 AAGCGTAACC TGACTCAT CCGACCAGGC chr3R:22491387-22491507 21 6.58e-05 TTAAACCGCC TGACTCAC TTTAAGACTT chr3R:22424211-22424331 79 6.58e-05 CATATTTCCA TGACTCAC TTTAAAAACA chr3L:14055879-14055999 67 6.58e-05 AGTCACTCGC TGACTCAC TGCTAACGCC chr3R:23993569-23993689 93 6.58e-05 TTGCTCAGAG TGACTCAC CCGATTTGTT chr3L:20517463-20517583 49 6.58e-05 aaTGGCTTTG TGACTCAC GGCACGTAGG chr3R:21112823-21112943 26 6.58e-05 TAAACGGACA TGACTCAC AGCCAATAAC chr2L:2873577-2873697 51 6.58e-05 CTTTTCTTTG TGACTCAC CTCTGCCTGC chr2R:23981404-23981524 11 6.58e-05 GCTTCCCCGA TGACTCAC AGTATTTGTC chr3L:5181066-5181186 30 6.58e-05 ACCTCGACGT TGACTCAC CTTTTTGAAA chr3R:31743392-31743512 57 6.58e-05 GTTTGGGCTC TGACTCAC TGGGCGCTCT chrX:16598518-16598638 113 1.05e-04 GTAACATATT TGATTCAT chr2L:7909863-7909983 19 1.05e-04 CGATTTGCGC TGAGTCAG ACCTTGAAAT chrX:18282450-18282570 51 1.05e-04 ACGCGATATG TGATTCAT ATGAAACAGA chr3L:4411133-4411253 16 1.05e-04 CAACGAACCT TGATTCAT TGGTACAGTG chr3R:18914909-18915029 26 1.05e-04 TGCTCGCAGT TGAGTCAG TTAGTAACAA chr3L:20186751-20186871 83 1.05e-04 GAATGCTTGA TGATTCAT CGCAACAAAC chr2L:3479744-3479864 29 1.05e-04 CACTTCACCT TGAGTCAG TTTCGGTTTA chr2L:7701500-7701620 99 1.05e-04 CGATTCACAC TGAGTCAG TCTTGATTTG chr3R:30809114-30809234 58 1.05e-04 TTAACGCGCG TGATTCAT AAACCCGTCT chr3L:2493631-2493751 79 1.05e-04 ATGGAATGGA TGATTCAT TCCGAGAGGT chr3L:8819568-8819688 94 1.05e-04 GCAGGCGCGG TGATTCAT GCACCATCCA chr3R:16626174-16626294 44 1.05e-04 CTCTCTCAGG TGAGTCAG AAGAAGAAGA chrX:8895653-8895773 89 1.05e-04 ATTCACTCAG TGATTCAT TTGTTGATCT chrX:5621997-5622117 48 1.05e-04 GCTTTATCAA TGATTCAT GCACACCACA chr3L:13488416-13488536 22 1.23e-04 GCTCCAGTCA TGATTCAC GATTGCAACA chrX:19148301-19148421 66 1.23e-04 ATTCGCCACA TGATTCAC TAAAAAAAAA chr3R:15411136-15411256 91 1.23e-04 ACCTCACGCA TGATTCAC TCTTGGGCGC chr3R:17670559-17670679 42 1.23e-04 GCTCCATGGA TGATTCAC TGCCGCCGGC chr2R:11181926-11182046 50 1.23e-04 TGTTGGCCGA TGATTCAC CTGACGGCGT chr3R:6401397-6401517 93 1.23e-04 CAAAGCGGAA TGATTCAC GTTTGCCTGT chr2L:5983303-5983423 44 1.37e-04 AACAGCACGA TGACTCAG CCGCTGCGCC chr3L:16613064-16613184 88 1.37e-04 TTTTTGCACA TGACTCAG GGGGGAGCTG chr2R:19179254-19179374 98 1.52e-04 TTTTTTATTC TGCGTCAT AATTCGCGAT chr2R:11595247-11595367 70 1.52e-04 GCCTGCCGTC TGCGTCAT CGTCTGGCGC chr3L:20404046-20404166 38 1.52e-04 CGTCATCGGC TGCGTCAT CAATTCGGGA chr2R:9143857-9143977 34 1.63e-04 GTTGTTCGTA TGCGTCAC CCGATACCGA chrX:17879691-17879811 66 1.63e-04 AAGAAACAAA TGCGTCAC TCCTGCCTGC chr3R:18924394-18924514 75 1.63e-04 TGTCGCGCAA TGCGTCAC TGGCTGAGCA chr3L:1321368-1321488 69 1.63e-04 GCACTTGGCA TGCGTCAC AATGGCGGCG chr3L:69468-69588 10 1.63e-04 TGTATTTGG TGCGTCAC TCCTGCCAGC chrX:3718703-3718823 2 2.05e-04 a tgagtCAA CGCGCAAAAT chrX:17746028-17746148 38 2.05e-04 ACATGAATGA TGAATCAT TGCTACCTGC chr2L:8426298-8426418 78 2.05e-04 CAAGTGTCGA TGAATCAT TTGAGGCGCT chr3L:9678312-9678432 86 2.05e-04 GCAATCAAAG TGAATCAT CACTTAACAA chr2R:21382973-21383093 28 2.05e-04 GTTTCGCCGG TGAGTCAA CAACGTCAAC chr2L:7422418-7422538 48 2.05e-04 GGAAGAGAGG TGAGTCAA GGAGTGGACT chr3L:18683936-18684056 84 2.24e-04 AGGATTTGTA TGAATCAC TTCTGTTTGT chr2R:5691773-5691893 89 2.24e-04 CGCGAACAAG TGAATCAC TGAGGCTGGC chr2L:3791648-3791768 42 2.98e-04 GGGTGCCCTA TGAGTAAT CTTACTAGCG chrX:6255495-6255615 59 2.98e-04 AAATATCGCC TGAGTAAT TTAAATACGG chr3L:20349450-20349570 112 2.98e-04 agtgagtgag tgagTAAT C chr3R:14780834-14780954 27 2.98e-04 ACGTTGCGTA TGAGTAAT CAACTGGCAA chr2L:5428948-5429068 36 2.98e-04 AACCATTAAG TTAGTCAT CTTTTTTTTA chr3L:7529363-7529483 55 2.98e-04 GGTCGAGTGA TTAGTCAT AGTGGATCCA chr2R:24685217-24685337 95 2.98e-04 AGGAGGCGTA TGAGTAAT GCGCTTCTTG chrX:1353472-1353592 9 2.98e-04 CAGAGCTA TTAGTCAT ctccgctccg chr2R:10211301-10211421 15 3.71e-04 gatgagtgag tgagtaac ccgactggcg chr3L:17577770-17577890 89 3.71e-04 GACACGATTA TGACTCAA TGCAAGTGTA chr3R:25518370-25518490 108 3.71e-04 tgcgtgtAAG TGACTCAA CTCGA chrX:8560177-8560297 27 3.71e-04 TCATCACATA TGAGTAAC TGGTGAATCA chr2R:17261896-17262016 72 3.71e-04 CGATTCCGAG TGACTCAA CTTGTGCGGC chr2L:6643562-6643682 109 4.20e-04 GCGAAAAAGC TTACTCAT ATCT chr2L:19548317-19548437 21 4.20e-04 TATATTGGCA TTACTCAT CGCTACATTA chr3R:18243917-18244037 58 4.20e-04 TACTCTCGCA TTACTCAT GCTTATGCGC chr2R:6529989-6530109 75 4.20e-04 TGGTCATTAT TTACTCAT CGATTGCCGA chr2R:6023089-6023209 103 4.20e-04 ATAAGGAGGC TTACTCAT CGCAAGCCTC chr3L:4107184-4107304 3 4.20e-04 GA TTACTCAT CCAACTTTTA chrX:11134027-11134147 28 4.20e-04 CCGGGCTATA TTACTCAT GGGGTATACT chr3L:17430577-17430697 20 4.56e-04 GGGCTGATGC TGACTAAC AATTTACCTC chr2R:18411625-18411745 45 4.56e-04 CAATTATATT TGACTAAC ATACAAAACT chrX:2658561-2658681 105 4.86e-04 GTGGTTGGCG TGCGTCAG CGATAATA chr3R:5647776-5647896 111 4.86e-04 TAACAGAAAG TGCGTCAG GC chr2R:6517765-6517885 58 5.01e-04 CGCCTCTGGC TGCTTCAC CCACAATAAA chr2L:634268-634388 106 5.43e-04 TACTTTTGAG TGAATCAG ATATACC chr2R:10108560-10108680 75 5.43e-04 TCAAATCCCA TGAATCAG GAACCATATC chr3R:8116117-8116237 61 6.55e-04 CATTGTGTAC TTATTCAT CAATACCTTC chr2R:9409624-9409744 104 6.55e-04 AATGCTTGGG TGAGTAAG AAGCCGAGG chr2L:16889115-16889235 78 6.55e-04 GTGTATAATT TGATTAAT ACGACTGCCA chr3R:20765798-20765918 71 7.35e-04 TCTCGCTTTA TGCATCAT TTTGTTTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:7089025-7089145 1.9e-05 80_[+1]_32 chr3L:18402430-18402550 1.9e-05 56_[+1]_56 chr3R:8127345-8127465 1.9e-05 51_[+1]_61 chr3L:11218890-11219010 1.9e-05 42_[+1]_70 chr3R:5262250-5262370 1.9e-05 65_[+1]_47 chrX:4108980-4109100 1.9e-05 98_[+1]_14 chr3R:29778813-29778933 1.9e-05 65_[+1]_47 chr2R:10156216-10156336 1.9e-05 26_[+1]_86 chr3R:16453111-16453231 1.9e-05 [+1]_112 chrX:2077285-2077405 1.9e-05 96_[+1]_16 chr2L:7418408-7418528 1.9e-05 8_[+1]_104 chr2R:22399763-22399883 1.9e-05 64_[+1]_48 chr3R:24039297-24039417 1.9e-05 24_[+1]_88 chr2R:18572911-18573031 1.9e-05 51_[+1]_61 chr3R:12628673-12628793 3.3e-05 106_[+1]_6 chrX:8215192-8215312 3.3e-05 76_[+1]_36 chr3L:17614003-17614123 3.3e-05 28_[+1]_84 chr3R:11211310-11211430 3.3e-05 78_[+1]_34 chr3L:22465953-22466073 3.3e-05 42_[+1]_70 chrX:1321173-1321293 3.3e-05 83_[+1]_29 chr2R:25009573-25009693 3.3e-05 43_[+1]_69 chr3R:16280082-16280202 3.3e-05 52_[+1]_60 chr2R:22657629-22657749 5.2e-05 87_[+1]_25 chr2R:13941079-13941199 5.2e-05 62_[+1]_50 chrX:6544063-6544183 5.2e-05 64_[+1]_48 chrX:7973363-7973483 5.2e-05 49_[+1]_63 chrX:3935143-3935263 5.2e-05 64_[+1]_48 chr2L:7678385-7678505 5.2e-05 14_[+1]_98 chr2L:13641163-13641283 5.2e-05 77_[+1]_35 chr2R:16270757-16270877 5.2e-05 48_[+1]_64 chr2R:6563054-6563174 5.2e-05 77_[+1]_35 chr3R:22491387-22491507 6.6e-05 20_[+1]_92 chr3R:22424211-22424331 6.6e-05 78_[+1]_34 chr3L:14055879-14055999 6.6e-05 66_[+1]_46 chr3R:23993569-23993689 6.6e-05 92_[+1]_20 chr3L:20517463-20517583 6.6e-05 48_[+1]_64 chr3R:21112823-21112943 6.6e-05 25_[+1]_87 chr2L:2873577-2873697 6.6e-05 50_[+1]_62 chr2R:23981404-23981524 6.6e-05 10_[+1]_102 chr3L:5181066-5181186 6.6e-05 29_[+1]_83 chr3R:31743392-31743512 6.6e-05 56_[+1]_56 chrX:16598518-16598638 0.0001 112_[+1] chr2L:7909863-7909983 0.0001 18_[+1]_94 chrX:18282450-18282570 0.0001 50_[+1]_62 chr3L:4411133-4411253 0.0001 15_[+1]_97 chr3R:18914909-18915029 0.0001 25_[+1]_87 chr3L:20186751-20186871 0.0001 82_[+1]_30 chr2L:3479744-3479864 0.0001 28_[+1]_84 chr2L:7701500-7701620 0.0001 98_[+1]_14 chr3R:30809114-30809234 0.0001 57_[+1]_55 chr3L:2493631-2493751 0.0001 78_[+1]_34 chr3L:8819568-8819688 0.0001 93_[+1]_19 chr3R:16626174-16626294 0.0001 43_[+1]_69 chrX:8895653-8895773 0.0001 88_[+1]_24 chrX:5621997-5622117 0.0001 47_[+1]_65 chr3L:13488416-13488536 0.00012 21_[+1]_91 chrX:19148301-19148421 0.00012 65_[+1]_47 chr3R:15411136-15411256 0.00012 90_[+1]_22 chr3R:17670559-17670679 0.00012 41_[+1]_71 chr2R:11181926-11182046 0.00012 49_[+1]_63 chr3R:6401397-6401517 0.00012 92_[+1]_20 chr2L:5983303-5983423 0.00014 43_[+1]_69 chr3L:16613064-16613184 0.00014 87_[+1]_25 chr2R:19179254-19179374 0.00015 97_[+1]_15 chr2R:11595247-11595367 0.00015 69_[+1]_43 chr3L:20404046-20404166 0.00015 37_[+1]_75 chr2R:9143857-9143977 0.00016 33_[+1]_79 chrX:17879691-17879811 0.00016 65_[+1]_47 chr3R:18924394-18924514 0.00016 74_[+1]_38 chr3L:1321368-1321488 0.00016 68_[+1]_44 chr3L:69468-69588 0.00016 9_[+1]_103 chrX:3718703-3718823 0.00021 1_[+1]_111 chrX:17746028-17746148 0.00021 37_[+1]_75 chr2L:8426298-8426418 0.00021 77_[+1]_35 chr3L:9678312-9678432 0.00021 85_[+1]_27 chr2R:21382973-21383093 0.00021 27_[+1]_85 chr2L:7422418-7422538 0.00021 47_[+1]_65 chr3L:18683936-18684056 0.00022 83_[+1]_29 chr2R:5691773-5691893 0.00022 88_[+1]_24 chr2L:3791648-3791768 0.0003 41_[+1]_71 chrX:6255495-6255615 0.0003 58_[+1]_54 chr3L:20349450-20349570 0.0003 111_[+1]_1 chr3R:14780834-14780954 0.0003 26_[+1]_86 chr2L:5428948-5429068 0.0003 35_[+1]_77 chr3L:7529363-7529483 0.0003 54_[+1]_58 chr2R:24685217-24685337 0.0003 94_[+1]_18 chrX:1353472-1353592 0.0003 8_[+1]_104 chr2R:10211301-10211421 0.00037 14_[+1]_98 chr3L:17577770-17577890 0.00037 88_[+1]_24 chr3R:25518370-25518490 0.00037 107_[+1]_5 chrX:8560177-8560297 0.00037 26_[+1]_86 chr2R:17261896-17262016 0.00037 71_[+1]_41 chr2L:6643562-6643682 0.00042 108_[+1]_4 chr2L:19548317-19548437 0.00042 20_[+1]_92 chr3R:18243917-18244037 0.00042 57_[+1]_55 chr2R:6529989-6530109 0.00042 74_[+1]_38 chr2R:6023089-6023209 0.00042 102_[+1]_10 chr3L:4107184-4107304 0.00042 2_[+1]_110 chrX:11134027-11134147 0.00042 27_[+1]_85 chr3L:17430577-17430697 0.00046 19_[+1]_93 chr2R:18411625-18411745 0.00046 44_[+1]_68 chrX:2658561-2658681 0.00049 104_[+1]_8 chr3R:5647776-5647896 0.00049 110_[+1]_2 chr2R:6517765-6517885 0.0005 57_[+1]_55 chr2L:634268-634388 0.00054 105_[+1]_7 chr2R:10108560-10108680 0.00054 74_[+1]_38 chr3R:8116117-8116237 0.00065 60_[+1]_52 chr2R:9409624-9409744 0.00065 103_[+1]_9 chr2L:16889115-16889235 0.00065 77_[+1]_35 chr3R:20765798-20765918 0.00074 70_[+1]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGASTCAY width=8 seqs=110 chr3R:7089025-7089145 ( 81) TGAGTCAT 1 chr3L:18402430-18402550 ( 57) TGAGTCAT 1 chr3R:8127345-8127465 ( 52) TGAGTCAT 1 chr3L:11218890-11219010 ( 43) TGAGTCAT 1 chr3R:5262250-5262370 ( 66) TGAGTCAT 1 chrX:4108980-4109100 ( 99) TGAGTCAT 1 chr3R:29778813-29778933 ( 66) TGAGTCAT 1 chr2R:10156216-10156336 ( 27) TGAGTCAT 1 chr3R:16453111-16453231 ( 1) TGAGTCAT 1 chrX:2077285-2077405 ( 97) TGAGTCAT 1 chr2L:7418408-7418528 ( 9) TGAGTCAT 1 chr2R:22399763-22399883 ( 65) TGAGTCAT 1 chr3R:24039297-24039417 ( 25) TGAGTCAT 1 chr2R:18572911-18573031 ( 52) TGAGTCAT 1 chr3R:12628673-12628793 ( 107) TGAGTCAC 1 chrX:8215192-8215312 ( 77) TGAGTCAC 1 chr3L:17614003-17614123 ( 29) TGAGTCAC 1 chr3R:11211310-11211430 ( 79) TGAGTCAC 1 chr3L:22465953-22466073 ( 43) TGAGTCAC 1 chrX:1321173-1321293 ( 84) TGAGTCAC 1 chr2R:25009573-25009693 ( 44) TGAGTCAC 1 chr3R:16280082-16280202 ( 53) TGAGTCAC 1 chr2R:22657629-22657749 ( 88) TGACTCAT 1 chr2R:13941079-13941199 ( 63) TGACTCAT 1 chrX:6544063-6544183 ( 65) TGACTCAT 1 chrX:7973363-7973483 ( 50) TGACTCAT 1 chrX:3935143-3935263 ( 65) TGACTCAT 1 chr2L:7678385-7678505 ( 15) TGACTCAT 1 chr2L:13641163-13641283 ( 78) TGACTCAT 1 chr2R:16270757-16270877 ( 49) TGACTCAT 1 chr2R:6563054-6563174 ( 78) TGACTCAT 1 chr3R:22491387-22491507 ( 21) TGACTCAC 1 chr3R:22424211-22424331 ( 79) TGACTCAC 1 chr3L:14055879-14055999 ( 67) TGACTCAC 1 chr3R:23993569-23993689 ( 93) TGACTCAC 1 chr3L:20517463-20517583 ( 49) TGACTCAC 1 chr3R:21112823-21112943 ( 26) TGACTCAC 1 chr2L:2873577-2873697 ( 51) TGACTCAC 1 chr2R:23981404-23981524 ( 11) TGACTCAC 1 chr3L:5181066-5181186 ( 30) TGACTCAC 1 chr3R:31743392-31743512 ( 57) TGACTCAC 1 chrX:16598518-16598638 ( 113) TGATTCAT 1 chr2L:7909863-7909983 ( 19) TGAGTCAG 1 chrX:18282450-18282570 ( 51) TGATTCAT 1 chr3L:4411133-4411253 ( 16) TGATTCAT 1 chr3R:18914909-18915029 ( 26) TGAGTCAG 1 chr3L:20186751-20186871 ( 83) TGATTCAT 1 chr2L:3479744-3479864 ( 29) TGAGTCAG 1 chr2L:7701500-7701620 ( 99) TGAGTCAG 1 chr3R:30809114-30809234 ( 58) TGATTCAT 1 chr3L:2493631-2493751 ( 79) TGATTCAT 1 chr3L:8819568-8819688 ( 94) TGATTCAT 1 chr3R:16626174-16626294 ( 44) TGAGTCAG 1 chrX:8895653-8895773 ( 89) TGATTCAT 1 chrX:5621997-5622117 ( 48) TGATTCAT 1 chr3L:13488416-13488536 ( 22) TGATTCAC 1 chrX:19148301-19148421 ( 66) TGATTCAC 1 chr3R:15411136-15411256 ( 91) TGATTCAC 1 chr3R:17670559-17670679 ( 42) TGATTCAC 1 chr2R:11181926-11182046 ( 50) TGATTCAC 1 chr3R:6401397-6401517 ( 93) TGATTCAC 1 chr2L:5983303-5983423 ( 44) TGACTCAG 1 chr3L:16613064-16613184 ( 88) TGACTCAG 1 chr2R:19179254-19179374 ( 98) TGCGTCAT 1 chr2R:11595247-11595367 ( 70) TGCGTCAT 1 chr3L:20404046-20404166 ( 38) TGCGTCAT 1 chr2R:9143857-9143977 ( 34) TGCGTCAC 1 chrX:17879691-17879811 ( 66) TGCGTCAC 1 chr3R:18924394-18924514 ( 75) TGCGTCAC 1 chr3L:1321368-1321488 ( 69) TGCGTCAC 1 chr3L:69468-69588 ( 10) TGCGTCAC 1 chrX:3718703-3718823 ( 2) TGAGTCAA 1 chrX:17746028-17746148 ( 38) TGAATCAT 1 chr2L:8426298-8426418 ( 78) TGAATCAT 1 chr3L:9678312-9678432 ( 86) TGAATCAT 1 chr2R:21382973-21383093 ( 28) TGAGTCAA 1 chr2L:7422418-7422538 ( 48) TGAGTCAA 1 chr3L:18683936-18684056 ( 84) TGAATCAC 1 chr2R:5691773-5691893 ( 89) TGAATCAC 1 chr2L:3791648-3791768 ( 42) TGAGTAAT 1 chrX:6255495-6255615 ( 59) TGAGTAAT 1 chr3L:20349450-20349570 ( 112) TGAGTAAT 1 chr3R:14780834-14780954 ( 27) TGAGTAAT 1 chr2L:5428948-5429068 ( 36) TTAGTCAT 1 chr3L:7529363-7529483 ( 55) TTAGTCAT 1 chr2R:24685217-24685337 ( 95) TGAGTAAT 1 chrX:1353472-1353592 ( 9) TTAGTCAT 1 chr2R:10211301-10211421 ( 15) TGAGTAAC 1 chr3L:17577770-17577890 ( 89) TGACTCAA 1 chr3R:25518370-25518490 ( 108) TGACTCAA 1 chrX:8560177-8560297 ( 27) TGAGTAAC 1 chr2R:17261896-17262016 ( 72) TGACTCAA 1 chr2L:6643562-6643682 ( 109) TTACTCAT 1 chr2L:19548317-19548437 ( 21) TTACTCAT 1 chr3R:18243917-18244037 ( 58) TTACTCAT 1 chr2R:6529989-6530109 ( 75) TTACTCAT 1 chr2R:6023089-6023209 ( 103) TTACTCAT 1 chr3L:4107184-4107304 ( 3) TTACTCAT 1 chrX:11134027-11134147 ( 28) TTACTCAT 1 chr3L:17430577-17430697 ( 20) TGACTAAC 1 chr2R:18411625-18411745 ( 45) TGACTAAC 1 chrX:2658561-2658681 ( 105) TGCGTCAG 1 chr3R:5647776-5647896 ( 111) TGCGTCAG 1 chr2R:6517765-6517885 ( 58) TGCTTCAC 1 chr2L:634268-634388 ( 106) TGAATCAG 1 chr2R:10108560-10108680 ( 75) TGAATCAG 1 chr3R:8116117-8116237 ( 61) TTATTCAT 1 chr2R:9409624-9409744 ( 104) TGAGTAAG 1 chr2L:16889115-16889235 ( 78) TGATTAAT 1 chr3R:20765798-20765918 ( 71) TGCATCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.21064 E= 5.7e-044 -1343 -1343 -1343 181 -1343 -1343 204 -151 167 -99 -1343 -1343 -194 47 108 -80 -1343 -1343 -1343 181 -148 205 -1343 -1343 184 -1343 -1343 -1343 -235 59 -100 84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 110 E= 5.7e-044 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.100000 0.890909 0.109091 0.000000 0.000000 0.072727 0.300000 0.463636 0.163636 0.000000 0.000000 0.000000 1.000000 0.100000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.054545 0.327273 0.109091 0.509091 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 regular expression -------------------------------------------------------------------------------- TGA[GC]TCA[TC] -------------------------------------------------------------------------------- Time 7.37 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACA MEME-2 width = 8 sites = 36 llr = 310 E-value = 1.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :8:9:927 pos.-specific C a:a:a:7: probability G :2:1:1:: matrix T ::::::13 bits 2.2 * * * 2.0 * * * 1.8 * * * 1.5 * * ** Relative 1.3 * **** Entropy 1.1 ****** (12.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10211301-10211421 109 1.34e-05 caccagcaca cacacaca caca chr3R:17059113-17059233 70 1.34e-05 GGCACACAGA CACACACA CTAATGCACT chr2R:17452266-17452386 49 1.34e-05 AGTGACTGGA CACACACA CATGTGCGAA chrX:8215192-8215312 92 1.34e-05 CACGTATCCA CACACACA CACCTGTAAG chr3R:5647776-5647896 24 1.34e-05 TTCGAAAGAG CACACACA CCCACACACT chr3L:10761045-10761165 5 1.34e-05 caca cacacaca cacaaacaca chrX:1577230-1577350 30 1.34e-05 CTCTGACACA CACACACA TGGGCACAAA chr2R:10108560-10108680 19 1.34e-05 tacacacagt cacacaca gacaGGGCTG chr2L:7422418-7422538 98 1.34e-05 GCAAAAAGTG CACACACA CCAAGAAGCC chr3R:23993569-23993689 70 2.72e-05 GTCCAGCGAT CACACACT GCGGATTGCT chr2L:2873577-2873697 31 2.72e-05 TGTGCACACC CACACACT CTCTTTTCTT chrX:4108980-4109100 39 2.72e-05 CTGATAGGAA CACACACT AGCATGACTC chr3R:16453315-16453435 43 3.77e-05 gacacgaaca cgcacaca tctcgaagtc chrX:16425276-16425396 111 3.77e-05 GGCATACACA CGCACACA GC chrX:1617014-1617134 10 3.77e-05 TTGGAAATT CGCACACA CGAGGCGATC chr3R:5262250-5262370 6 3.77e-05 TGAAC CGCACACA TCGGAGCACA chr2R:17261896-17262016 93 4.83e-05 GTGCGGCACC CACGCACA TAGTTATATT chr3R:16453111-16453231 24 4.83e-05 CATGCACAAG CACGCACA CTCGCTCGTT chr2L:5294632-5294752 22 6.55e-05 ACCGCTGTTG CACACAAA GTTCAAGTCT chr2L:3791648-3791768 70 6.55e-05 AGATAAGCTC CACACAAA AGCTTCGTAC chrX:5621997-5622117 62 6.55e-05 TCATGCACAC CACACAAA TGTACGTGCC chr2R:10040595-10040715 52 8.32e-05 TAGCCGTGTA CACACATA CCTTCTCCGC chr2R:18173682-18173802 89 8.32e-05 AGAATAGAGC CACACATA TTCAAAGCTC chr2R:16720084-16720204 33 8.32e-05 ATTCATTATA CACACATA TACTTTGTTA chr3R:22044044-22044164 105 9.39e-05 CTTCGCGGAG CGCACACT ACTTACAC chrX:1353472-1353592 35 9.39e-05 cgcttcgcac cgcacact ccgctccacc chr2R:18126287-18126407 95 1.04e-04 AGAGAGCAAG CACACGCA GTTCCGCGAT chr2R:20603668-20603788 79 1.04e-04 TTGTCTGGAG CACACGCA ACGAGTTTTG chr2R:6023089-6023209 2 1.15e-04 T CACGCACT GCGCTGTAGT chr3L:18013529-18013649 36 1.33e-04 TCGCAGTCAA CACACAAT TTGCAACACG chrX:11134027-11134147 108 1.33e-04 TCCCGACAGC CACACAAT ACATA chr2L:5428948-5429068 58 1.59e-04 TTTTTATCTG CACACATT TTGCAACTGA chrX:8420812-8420932 36 1.59e-04 TCCTTCCCTT CACACATT GCAGAGTGAG chr3R:24039297-24039417 88 1.59e-04 AGGCAAAACG CGCGCACA ATGGATGCCC chr3L:2493631-2493751 105 1.97e-04 GTTCGTATGA CACACGCT GAAATTCA chr3R:21374052-21374172 61 2.11e-04 ACAAAATCAG CACGCAAA AAGTAAAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10211301-10211421 1.3e-05 108_[+2]_4 chr3R:17059113-17059233 1.3e-05 69_[+2]_43 chr2R:17452266-17452386 1.3e-05 48_[+2]_64 chrX:8215192-8215312 1.3e-05 91_[+2]_21 chr3R:5647776-5647896 1.3e-05 23_[+2]_89 chr3L:10761045-10761165 1.3e-05 4_[+2]_108 chrX:1577230-1577350 1.3e-05 29_[+2]_83 chr2R:10108560-10108680 1.3e-05 18_[+2]_94 chr2L:7422418-7422538 1.3e-05 97_[+2]_15 chr3R:23993569-23993689 2.7e-05 69_[+2]_43 chr2L:2873577-2873697 2.7e-05 30_[+2]_82 chrX:4108980-4109100 2.7e-05 38_[+2]_74 chr3R:16453315-16453435 3.8e-05 42_[+2]_70 chrX:16425276-16425396 3.8e-05 110_[+2]_2 chrX:1617014-1617134 3.8e-05 9_[+2]_103 chr3R:5262250-5262370 3.8e-05 5_[+2]_107 chr2R:17261896-17262016 4.8e-05 92_[+2]_20 chr3R:16453111-16453231 4.8e-05 23_[+2]_89 chr2L:5294632-5294752 6.6e-05 21_[+2]_91 chr2L:3791648-3791768 6.6e-05 69_[+2]_43 chrX:5621997-5622117 6.6e-05 61_[+2]_51 chr2R:10040595-10040715 8.3e-05 51_[+2]_61 chr2R:18173682-18173802 8.3e-05 88_[+2]_24 chr2R:16720084-16720204 8.3e-05 32_[+2]_80 chr3R:22044044-22044164 9.4e-05 104_[+2]_8 chrX:1353472-1353592 9.4e-05 34_[+2]_78 chr2R:18126287-18126407 0.0001 94_[+2]_18 chr2R:20603668-20603788 0.0001 78_[+2]_34 chr2R:6023089-6023209 0.00012 1_[+2]_111 chr3L:18013529-18013649 0.00013 35_[+2]_77 chrX:11134027-11134147 0.00013 107_[+2]_5 chr2L:5428948-5429068 0.00016 57_[+2]_55 chrX:8420812-8420932 0.00016 35_[+2]_77 chr3R:24039297-24039417 0.00016 87_[+2]_25 chr3L:2493631-2493751 0.0002 104_[+2]_8 chr3R:21374052-21374172 0.00021 60_[+2]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACA width=8 seqs=36 chr2R:10211301-10211421 ( 109) CACACACA 1 chr3R:17059113-17059233 ( 70) CACACACA 1 chr2R:17452266-17452386 ( 49) CACACACA 1 chrX:8215192-8215312 ( 92) CACACACA 1 chr3R:5647776-5647896 ( 24) CACACACA 1 chr3L:10761045-10761165 ( 5) CACACACA 1 chrX:1577230-1577350 ( 30) CACACACA 1 chr2R:10108560-10108680 ( 19) CACACACA 1 chr2L:7422418-7422538 ( 98) CACACACA 1 chr3R:23993569-23993689 ( 70) CACACACT 1 chr2L:2873577-2873697 ( 31) CACACACT 1 chrX:4108980-4109100 ( 39) CACACACT 1 chr3R:16453315-16453435 ( 43) CGCACACA 1 chrX:16425276-16425396 ( 111) CGCACACA 1 chrX:1617014-1617134 ( 10) CGCACACA 1 chr3R:5262250-5262370 ( 6) CGCACACA 1 chr2R:17261896-17262016 ( 93) CACGCACA 1 chr3R:16453111-16453231 ( 24) CACGCACA 1 chr2L:5294632-5294752 ( 22) CACACAAA 1 chr2L:3791648-3791768 ( 70) CACACAAA 1 chrX:5621997-5622117 ( 62) CACACAAA 1 chr2R:10040595-10040715 ( 52) CACACATA 1 chr2R:18173682-18173802 ( 89) CACACATA 1 chr2R:16720084-16720204 ( 33) CACACATA 1 chr3R:22044044-22044164 ( 105) CGCACACT 1 chrX:1353472-1353592 ( 35) CGCACACT 1 chr2R:18126287-18126407 ( 95) CACACGCA 1 chr2R:20603668-20603788 ( 79) CACACGCA 1 chr2R:6023089-6023209 ( 2) CACGCACT 1 chr3L:18013529-18013649 ( 36) CACACAAT 1 chrX:11134027-11134147 ( 108) CACACAAT 1 chr2L:5428948-5429068 ( 58) CACACATT 1 chrX:8420812-8420932 ( 36) CACACATT 1 chr3R:24039297-24039417 ( 88) CGCGCACA 1 chr3L:2493631-2493751 ( 105) CACACGCT 1 chr3R:21374052-21374172 ( 61) CACGCAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4069 E= 1.6e+000 -1181 220 -1181 -1181 153 -1181 -17 -1181 -1181 220 -1181 -1181 163 -1181 -66 -1181 -1181 220 -1181 -1181 172 -1181 -139 -1181 -74 168 -1181 -104 132 -1181 -1181 10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.6e+000 0.000000 1.000000 0.000000 0.000000 0.805556 0.000000 0.194444 0.000000 0.000000 1.000000 0.000000 0.000000 0.861111 0.000000 0.138889 0.000000 0.000000 1.000000 0.000000 0.000000 0.916667 0.000000 0.083333 0.000000 0.166667 0.694444 0.000000 0.138889 0.694444 0.000000 0.000000 0.305556 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 regular expression -------------------------------------------------------------------------------- CACACAC[AT] -------------------------------------------------------------------------------- Time 13.46 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGTGT MEME-3 width = 8 sites = 29 llr = 260 E-value = 1.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 121::1:: pos.-specific C :::::::: probability G 8:9:a:a: matrix T 18:a:9:a bits 2.2 * 2.0 * * 1.8 * * ** 1.5 *** ** Relative 1.3 * ****** Entropy 1.1 ******** (12.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGTGT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17922901-17923021 65 1.52e-05 gtgtgcgtgt gtgtgtgt gtgtgtgCCT chr3R:12628673-12628793 8 1.52e-05 tgtgtgt gtgtgtgt gtgtgtgtgA chr3R:18243917-18244037 90 1.52e-05 atgcatgcgt gtgtgtgt gtgtttgtac chr2R:21662076-21662196 25 1.52e-05 ATATCCAATT GTGTGTGT TGTTTTTGTA chr3L:4411133-4411253 63 1.52e-05 CTTTCTAAAT GTGTGTGT TGGTGTCGCT chr3R:25518370-25518490 91 1.52e-05 taacgtactg gtgtgtgt gcgtgtAAGT chr3L:17614003-17614123 106 1.52e-05 gcgcgcgtga gtgtgtgt atgtCTC chr2R:6145738-6145858 55 1.52e-05 GCGAACGCGA GTGTGTGT GTGCTCGATC chrX:4108980-4109100 74 1.52e-05 CTGCGCCtgt gtgtgtgt gagtgtgtgc chr3R:29778813-29778933 103 1.52e-05 atgtgtgtgt gtgtgtgt gtgtAGAATC chr2R:16179390-16179510 105 1.52e-05 gcgcgagtgt gtgtgtgt gtgcgagt chr3R:4403694-4403814 106 3.00e-05 GTGTGCGTGC GAGTGTGT GCGTGTC chr3L:3902012-3902132 9 3.00e-05 CGTGTTGC GAGTGTGT GCATGTATGT chr3L:11777702-11777822 29 3.00e-05 TGATTGTAGA GAGTGTGT AAGTTGGGGA chr2R:11181926-11182046 80 3.00e-05 GCGTTTGTGC GAGTGTGT TTCTATCAAG chr2L:7422418-7422538 74 3.00e-05 CTGTGTGTGC GAGTGTGT GGCAACGCAA chr2R:10211301-10211421 35 4.49e-05 gactggcgtt gtgtgagt gagtgactga chr3L:13401155-13401275 109 4.49e-05 TTGTGGCACT GTGTGAGT GCGG chr2R:12917336-12917456 65 6.42e-05 TTTTCGGTGC ATGTGTGT TGGTGTTGTT chr2L:16889115-16889235 64 6.42e-05 GGGCATACAT ATGTGTGT ATAATTTGAT chr2R:16270757-16270877 102 6.42e-05 GCTACCGTCA ATGTGTGT ATGTGTTTGT chrX:15812313-15812433 110 8.40e-05 TGCCTCGTTG TTGTGTGT GGT chrX:12014251-12014371 113 8.40e-05 TTTGGCGAGA TTGTGTGT chr3R:16453111-16453231 57 1.03e-04 TGCGCTTTGT GTATGTGT GCGAGAGCTC chr2R:6143581-6143701 92 1.03e-04 CAGCTTATTT GTATGTGT TATTTTTTTG chr3L:20349450-20349570 101 1.18e-04 agagaggagt gagtgagt gagtgagTAA chrX:8420812-8420932 47 1.18e-04 ACACATTGCA GAGTGAGT GTTGTTCTCG chr3L:9678312-9678432 59 1.29e-04 gagaTGACGA GTGCGTGT GGATGGCCGG chr3L:17577770-17577890 102 1.68e-04 CTCAATGCAA GTGTATGT AAGCACTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17922901-17923021 1.5e-05 64_[+3]_48 chr3R:12628673-12628793 1.5e-05 7_[+3]_105 chr3R:18243917-18244037 1.5e-05 89_[+3]_23 chr2R:21662076-21662196 1.5e-05 24_[+3]_88 chr3L:4411133-4411253 1.5e-05 62_[+3]_50 chr3R:25518370-25518490 1.5e-05 90_[+3]_22 chr3L:17614003-17614123 1.5e-05 105_[+3]_7 chr2R:6145738-6145858 1.5e-05 54_[+3]_58 chrX:4108980-4109100 1.5e-05 73_[+3]_39 chr3R:29778813-29778933 1.5e-05 102_[+3]_10 chr2R:16179390-16179510 1.5e-05 104_[+3]_8 chr3R:4403694-4403814 3e-05 105_[+3]_7 chr3L:3902012-3902132 3e-05 8_[+3]_104 chr3L:11777702-11777822 3e-05 28_[+3]_84 chr2R:11181926-11182046 3e-05 79_[+3]_33 chr2L:7422418-7422538 3e-05 73_[+3]_39 chr2R:10211301-10211421 4.5e-05 34_[+3]_78 chr3L:13401155-13401275 4.5e-05 108_[+3]_4 chr2R:12917336-12917456 6.4e-05 64_[+3]_48 chr2L:16889115-16889235 6.4e-05 63_[+3]_49 chr2R:16270757-16270877 6.4e-05 101_[+3]_11 chrX:15812313-15812433 8.4e-05 109_[+3]_3 chrX:12014251-12014371 8.4e-05 112_[+3] chr3R:16453111-16453231 0.0001 56_[+3]_56 chr2R:6143581-6143701 0.0001 91_[+3]_21 chr3L:20349450-20349570 0.00012 100_[+3]_12 chrX:8420812-8420932 0.00012 46_[+3]_66 chr3L:9678312-9678432 0.00013 58_[+3]_54 chr3L:17577770-17577890 0.00017 101_[+3]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGTGT width=8 seqs=29 chr3L:17922901-17923021 ( 65) GTGTGTGT 1 chr3R:12628673-12628793 ( 8) GTGTGTGT 1 chr3R:18243917-18244037 ( 90) GTGTGTGT 1 chr2R:21662076-21662196 ( 25) GTGTGTGT 1 chr3L:4411133-4411253 ( 63) GTGTGTGT 1 chr3R:25518370-25518490 ( 91) GTGTGTGT 1 chr3L:17614003-17614123 ( 106) GTGTGTGT 1 chr2R:6145738-6145858 ( 55) GTGTGTGT 1 chrX:4108980-4109100 ( 74) GTGTGTGT 1 chr3R:29778813-29778933 ( 103) GTGTGTGT 1 chr2R:16179390-16179510 ( 105) GTGTGTGT 1 chr3R:4403694-4403814 ( 106) GAGTGTGT 1 chr3L:3902012-3902132 ( 9) GAGTGTGT 1 chr3L:11777702-11777822 ( 29) GAGTGTGT 1 chr2R:11181926-11182046 ( 80) GAGTGTGT 1 chr2L:7422418-7422538 ( 74) GAGTGTGT 1 chr2R:10211301-10211421 ( 35) GTGTGAGT 1 chr3L:13401155-13401275 ( 109) GTGTGAGT 1 chr2R:12917336-12917456 ( 65) ATGTGTGT 1 chr2L:16889115-16889235 ( 64) ATGTGTGT 1 chr2R:16270757-16270877 ( 102) ATGTGTGT 1 chrX:15812313-15812433 ( 110) TTGTGTGT 1 chrX:12014251-12014371 ( 113) TTGTGTGT 1 chr3R:16453111-16453231 ( 57) GTATGTGT 1 chr2R:6143581-6143701 ( 92) GTATGTGT 1 chr3L:20349450-20349570 ( 101) GAGTGAGT 1 chrX:8420812-8420932 ( 47) GAGTGAGT 1 chr3L:9678312-9678432 ( 59) GTGCGTGT 1 chr3L:17577770-17577890 ( 102) GTGTATGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1765 E= 1.6e+001 -143 -1150 192 -204 -21 -1150 -1150 141 -201 -1150 209 -1150 -1150 -265 -1150 176 -301 -1150 214 -1150 -102 -1150 -1150 160 -1150 -1150 219 -1150 -1150 -1150 -1150 181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 1.6e+001 0.103448 0.000000 0.827586 0.068966 0.241379 0.000000 0.000000 0.758621 0.068966 0.000000 0.931034 0.000000 0.000000 0.034483 0.000000 0.965517 0.034483 0.000000 0.965517 0.000000 0.137931 0.000000 0.000000 0.862069 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-3 regular expression -------------------------------------------------------------------------------- G[TA]GTGTGT -------------------------------------------------------------------------------- Time 19.46 secs. ******************************************************************************** ******************************************************************************** MOTIF CACGCCCC MEME-4 width = 8 sites = 7 llr = 77 E-value = 1.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACGCCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :9:::::: pos.-specific C a:a:aa7a probability G :1:a::3: matrix T :::::::: bits 2.2 * **** * 2.0 * **** * 1.8 * **** * 1.5 * **** * Relative 1.3 ******** Entropy 1.1 ******** (15.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACGCCCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6529989-6530109 25 6.38e-06 CCTTGCGGGC CACGCCCC CTCCTGCTCG chr2L:1117197-1117317 74 6.38e-06 ACCACCAACT CACGCCCC TTCGTATTCC chr2R:24981088-24981208 32 6.38e-06 GCTCTGCGTT CACGCCCC ACTGGGCTGC chr3L:16613064-16613184 106 6.38e-06 GGGGGAGCTG CACGCCCC CTGAGAA chr3R:20765798-20765918 50 1.28e-05 ATCCTCGAAA CACGCCGC ACCTCTCGCT chrX:12744355-12744475 25 1.28e-05 ACTTGCATGA CACGCCGC ATCATACAGC chr3L:8652820-8652940 19 1.78e-05 ATGGCGATCA CGCGCCCC CTTTGAAATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6529989-6530109 6.4e-06 24_[+4]_88 chr2L:1117197-1117317 6.4e-06 73_[+4]_39 chr2R:24981088-24981208 6.4e-06 31_[+4]_81 chr3L:16613064-16613184 6.4e-06 105_[+4]_7 chr3R:20765798-20765918 1.3e-05 49_[+4]_63 chrX:12744355-12744475 1.3e-05 24_[+4]_88 chr3L:8652820-8652940 1.8e-05 18_[+4]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACGCCCC width=8 seqs=7 chr2R:6529989-6530109 ( 25) CACGCCCC 1 chr2L:1117197-1117317 ( 74) CACGCCCC 1 chr2R:24981088-24981208 ( 32) CACGCCCC 1 chr3L:16613064-16613184 ( 106) CACGCCCC 1 chr3R:20765798-20765918 ( 50) CACGCCGC 1 chrX:12744355-12744475 ( 25) CACGCCGC 1 chr3L:8652820-8652940 ( 19) CGCGCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 1.7e+004 -945 220 -945 -945 162 -945 -61 -945 -945 220 -945 -945 -945 -945 219 -945 -945 220 -945 -945 -945 220 -945 -945 -945 172 38 -945 -945 220 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.7e+004 0.000000 1.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.714286 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCCCC MEME-4 regular expression -------------------------------------------------------------------------------- CACGCC[CG]C -------------------------------------------------------------------------------- Time 25.38 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCGCCC MEME-5 width = 8 sites = 2 llr = 24 E-value = 1.2e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aaaa:aaa probability G ::::a::: matrix T :::::::: bits 2.2 ******** 2.0 ******** 1.8 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCGCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16290528-16290648 5 4.96e-06 CCGA CCCCGCCC CTTCGGCCGT chr2L:1117197-1117317 21 4.96e-06 AGTCGCCATT CCCCGCCC GATAAGATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16290528-16290648 5e-06 4_[+5]_108 chr2L:1117197-1117317 5e-06 20_[+5]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCGCCC width=8 seqs=2 chr3R:16290528-16290648 ( 5) CCCCGCCC 1 chr2L:1117197-1117317 ( 21) CCCCGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.2e+005 -765 220 -765 -765 -765 220 -765 -765 -765 220 -765 -765 -765 220 -765 -765 -765 -765 219 -765 -765 220 -765 -765 -765 220 -765 -765 -765 220 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.2e+005 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-5 regular expression -------------------------------------------------------------------------------- CCCCGCCC -------------------------------------------------------------------------------- Time 31.31 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16179390-16179510 1.11e-01 100_[+3(1.52e-05)]_12 chrX:1353472-1353592 4.05e-03 34_[+2(9.39e-05)]_78 chr3R:16280082-16280202 4.65e-04 52_[+1(3.30e-05)]_60 chr2R:23522565-23522685 6.50e-01 120 chr3R:6401397-6401517 4.84e-03 120 chr2R:6563054-6563174 1.12e-01 77_[+1(5.16e-05)]_35 chr3R:21374052-21374172 4.14e-01 120 chrX:5621997-5622117 3.33e-03 61_[+2(6.55e-05)]_51 chrX:8895653-8895773 5.22e-02 120 chr3L:69468-69588 1.31e-01 120 chr3R:16626174-16626294 2.24e-01 120 chrX:15746918-15747038 7.18e-01 120 chr2R:20603668-20603788 1.85e-01 120 chr2R:18572911-18573031 8.63e-02 51_[+1(1.88e-05)]_61 chr2R:25009573-25009693 5.03e-02 43_[+1(3.30e-05)]_69 chr3R:24039297-24039417 8.99e-04 24_[+1(1.88e-05)]_88 chr2R:17405110-17405230 9.74e-01 120 chr3L:8819568-8819688 2.13e-01 120 chr2R:22399763-22399883 3.07e-03 64_[+1(1.88e-05)]_48 chr2L:1989414-1989534 9.73e-01 120 chr3R:28536910-28537030 9.30e-01 120 chrX:1321173-1321293 8.68e-04 47_[+1(3.30e-05)]_28_[+1(3.30e-05)]_\ 29 chr2L:7422418-7422538 1.38e-04 73_[+3(3.00e-05)]_16_[+2(1.34e-05)]_\ 15 chr3L:2493631-2493751 2.95e-02 120 chr2R:16270757-16270877 8.24e-03 48_[+1(5.16e-05)]_45_[+3(6.42e-05)]_\ 11 chr2L:9736344-9736464 9.96e-01 120 chr2R:24685217-24685337 1.21e-04 57_[+4(1.78e-05)]_55 chr2R:22681092-22681212 9.31e-01 120 chr3L:22465953-22466073 6.02e-03 42_[+1(3.30e-05)]_70 chr3L:1321368-1321488 6.96e-02 120 chr2R:6143581-6143701 9.07e-02 120 chr3R:4310783-4310903 3.60e-01 120 chr2L:7418408-7418528 1.38e-01 8_[+1(1.88e-05)]_104 chr2R:11181926-11182046 8.55e-04 79_[+3(3.00e-05)]_33 chr3L:4120628-4120748 4.46e-01 120 chrX:11600926-11601046 4.75e-01 120 chr3L:14676063-14676183 2.21e-01 120 chrX:2077285-2077405 1.39e-02 96_[+1(1.88e-05)]_16 chrX:10364651-10364771 8.09e-01 120 chr2R:17669361-17669481 9.30e-01 120 chr2R:21382973-21383093 1.24e-01 120 chr3R:18924394-18924514 1.57e-02 120 chr3L:7529363-7529483 5.34e-01 120 chr3R:16453111-16453231 1.30e-04 [+1(1.88e-05)]_15_[+2(4.83e-05)]_89 chr3R:31743392-31743512 2.56e-01 56_[+1(6.58e-05)]_56 chrM:161-281 7.74e-01 120 chr2R:18126287-18126407 2.75e-01 120 chr3R:17670559-17670679 3.04e-02 120 chr3L:20404046-20404166 1.08e-01 120 chrX:8420812-8420932 5.25e-02 120 chr3L:16613064-16613184 1.27e-04 105_[+4(6.38e-06)]_7 chr2L:5428948-5429068 8.31e-02 120 chr3L:9897570-9897690 9.93e-01 120 chr2L:16889115-16889235 3.80e-02 63_[+3(6.42e-05)]_49 chr2L:13845288-13845408 9.53e-01 120 chr2R:10156216-10156336 1.49e-02 26_[+1(1.88e-05)]_86 chr3R:30809114-30809234 2.54e-01 120 chr3R:16212334-16212454 3.68e-01 120 chr2R:10108560-10108680 2.32e-02 18_[+2(1.34e-05)]_94 chr2R:18411625-18411745 4.05e-01 120 chr3R:29778813-29778933 2.74e-04 65_[+1(1.88e-05)]_21_[+3(1.52e-05)]_\ [+3(1.52e-05)]_10 chr2L:7701500-7701620 1.37e-01 120 chr3R:21741103-21741223 5.91e-01 120 chrM:12913-13033 8.73e-01 120 chr3L:5181066-5181186 5.60e-02 29_[+1(6.58e-05)]_83 chrM:9827-9947 9.65e-01 120 chr2R:17261896-17262016 5.25e-03 92_[+2(4.83e-05)]_20 chr3R:11211310-11211430 1.22e-03 78_[+1(3.30e-05)]_34 chrX:4108980-4109100 8.08e-06 38_[+2(2.72e-05)]_25_[+3(1.52e-05)]_\ 2_[+3(3.00e-05)]_9_[+1(1.88e-05)]_14 chr2R:10045458-10045578 9.94e-01 120 chr2R:23981404-23981524 6.17e-02 10_[+1(6.58e-05)]_102 chr3R:9763015-9763135 2.14e-01 120 chr2R:5691773-5691893 5.95e-02 120 chr2R:14182750-14182870 7.99e-01 120 chr3L:9678312-9678432 8.97e-02 120 chr2R:11096410-11096530 9.73e-01 120 chrX:1577230-1577350 1.06e-01 25_[+2(1.34e-05)]_87 chr3R:5454383-5454503 9.42e-01 120 chrX:11134027-11134147 8.02e-02 120 chr2L:8426298-8426418 3.25e-01 120 chrX:1578423-1578543 5.84e-01 120 chr2L:1989669-1989789 9.75e-01 120 chr3R:17684978-17685098 9.60e-01 120 chr2L:3479744-3479864 3.01e-01 120 chrX:1622006-1622126 5.31e-01 120 chr2R:18833976-18834096 8.85e-01 120 chr2R:12175169-12175289 9.04e-01 120 chr2R:24981088-24981208 2.89e-02 31_[+4(6.38e-06)]_81 chr3R:31224220-31224340 6.38e-01 120 chr2L:5291332-5291452 7.33e-01 120 chr3L:18683936-18684056 5.13e-01 120 chr3R:13401783-13401903 9.85e-01 120 chr3R:5262250-5262370 1.06e-03 5_[+2(3.77e-05)]_52_[+1(1.88e-05)]_\ 47 chr3L:4107184-4107304 2.53e-01 120 chr3L:17947362-17947482 3.69e-01 120 chr3R:4243326-4243446 7.86e-01 120 chr3L:11218890-11219010 1.95e-02 42_[+1(1.88e-05)]_70 chr2R:16720084-16720204 2.74e-01 32_[+2(8.32e-05)]_80 chr3L:174485-174605 9.99e-01 120 chr2R:9409624-9409744 5.75e-01 120 chr2L:13641163-13641283 7.71e-03 77_[+1(5.16e-05)]_35 chr3L:446248-446368 5.93e-01 120 chr2R:6145738-6145858 1.48e-01 54_[+3(1.52e-05)]_58 chr3L:17430577-17430697 3.27e-02 120 chr3L:17614003-17614123 4.32e-04 28_[+1(3.30e-05)]_69_[+3(1.52e-05)]_\ 7 chrX:8560177-8560297 2.76e-01 120 chr3R:25518370-25518490 6.58e-03 61_[+3(1.52e-05)]_2_[+3(1.52e-05)]_\ 11_[+3(1.52e-05)]_22 chr3L:9897309-9897429 5.70e-01 120 chr3L:18019171-18019291 4.52e-01 120 chr2R:12917336-12917456 5.78e-02 64_[+3(6.42e-05)]_48 chrX:10728202-10728322 9.40e-01 120 chrM:5984-6104 9.28e-01 120 chr2R:10052178-10052298 6.94e-01 120 chr3R:14780834-14780954 1.49e-02 120 chr2R:11595247-11595367 3.44e-02 120 chr3R:8127345-8127465 3.99e-02 51_[+1(1.88e-05)]_61 chr3L:11777702-11777822 1.60e-01 28_[+3(3.00e-05)]_84 chr2L:2873577-2873697 3.65e-03 30_[+2(2.72e-05)]_12_[+1(6.58e-05)]_\ 62 chr2L:5085013-5085133 7.14e-01 120 chr3L:20186751-20186871 2.26e-02 120 chr2L:1117197-1117317 5.85e-05 20_[+5(4.96e-06)]_45_[+4(6.38e-06)]_\ 39 chrX:17746028-17746148 6.33e-02 120 chr3R:14481534-14481654 1.37e-01 120 chr3R:15411136-15411256 1.98e-01 120 chr3L:16359712-16359832 9.23e-01 120 chr3R:21112823-21112943 1.42e-01 25_[+1(6.58e-05)]_87 chr2R:18173682-18173802 4.22e-01 88_[+2(8.32e-05)]_24 chr2L:7678385-7678505 1.88e-01 14_[+1(5.16e-05)]_98 chr3L:21011712-21011832 9.35e-01 120 chrX:12014251-12014371 1.47e-01 112_[+3(8.40e-05)] chr3L:7154399-7154519 5.52e-01 120 chr3L:18402430-18402550 7.77e-03 56_[+1(1.88e-05)]_56 chrM:7084-7204 2.01e-01 120 chr2R:7013241-7013361 4.08e-01 120 chr2L:7954726-7954846 7.40e-01 120 chr3R:27186231-27186351 2.33e-02 120 chrX:19148301-19148421 1.24e-02 120 chrX:17879691-17879811 3.28e-01 120 chr2R:23746138-23746258 2.01e-01 120 chr3R:22044044-22044164 1.41e-01 104_[+2(9.39e-05)]_8 chrX:3935143-3935263 6.15e-02 64_[+1(5.16e-05)]_48 chr3R:23179465-23179585 7.73e-01 120 chrX:6875830-6875950 7.40e-01 120 chr2R:8069193-8069313 3.53e-02 120 chr3R:27129789-27129909 1.50e-02 120 chrX:1900270-1900390 9.99e-01 120 chr2L:5904694-5904814 9.73e-01 120 chr3L:10761045-10761165 1.07e-01 [+2(1.34e-05)]_[+2(1.34e-05)]_2_\ [+2(1.34e-05)]_94 chr3R:18166539-18166659 6.41e-01 120 chr3L:11627927-11628047 9.93e-01 120 chrX:7973363-7973483 2.80e-01 49_[+1(5.16e-05)]_63 chrX:1617014-1617134 1.79e-01 9_[+2(3.77e-05)]_103 chr3R:16290528-16290648 2.13e-03 4_[+5(4.96e-06)]_108 chr3R:18914909-18915029 1.71e-01 120 chrM:2087-2207 9.31e-01 120 chr2R:9143857-9143977 2.14e-01 120 chr3R:7089025-7089145 6.43e-02 80_[+1(1.88e-05)]_32 chr3R:5647776-5647896 2.58e-03 23_[+2(1.34e-05)]_2_[+2(2.72e-05)]_\ 79 chr2R:12015528-12015648 7.94e-01 120 chr3L:4411133-4411253 1.31e-03 62_[+3(1.52e-05)]_50 chrX:17814927-17815047 9.83e-01 120 chr2L:18981674-18981794 3.66e-01 120 chr3L:20517463-20517583 7.68e-02 48_[+1(6.58e-05)]_64 chr3R:10048901-10049021 8.89e-01 120 chrX:16425276-16425396 1.52e-01 110_[+2(3.77e-05)]_2 chrX:3718703-3718823 3.77e-03 120 chr2R:21662076-21662196 1.73e-01 24_[+3(1.52e-05)]_88 chr2L:1122277-1122397 2.91e-01 120 chr3L:18013529-18013649 2.64e-01 120 chrX:1610203-1610323 3.57e-01 120 chr2R:1522494-1522614 6.10e-01 120 chr2R:10040595-10040715 8.01e-02 51_[+2(8.32e-05)]_61 chr2R:6517765-6517885 7.20e-02 120 chr3R:17404322-17404442 6.77e-01 120 chr3L:13401155-13401275 1.96e-01 108_[+3(4.49e-05)]_4 chr2R:14220915-14221035 9.52e-01 120 chr2R:6023089-6023209 3.54e-02 120 chr2R:6529989-6530109 9.86e-04 24_[+4(6.38e-06)]_6_[+4(3.44e-05)]_\ 74 chrX:5904339-5904459 4.69e-01 120 chr2R:14027197-14027317 9.80e-01 120 chr2L:18572505-18572625 9.78e-01 120 chrX:2447859-2447979 8.23e-01 120 chr3R:29076124-29076244 8.83e-01 120 chrM:11353-11473 9.64e-01 120 chr3L:11721640-11721760 9.71e-01 120 chr3L:3902012-3902132 7.71e-02 8_[+3(3.00e-05)]_43_[+3(8.40e-05)]_\ 53 chrX:3949850-3949970 8.32e-01 120 chr3R:5504029-5504149 7.23e-01 120 chrX:18282450-18282570 2.10e-01 120 chr3L:8834655-8834775 6.67e-01 120 chr3R:23993569-23993689 4.72e-04 69_[+2(2.72e-05)]_15_[+1(6.58e-05)]_\ 20 chr3R:4738804-4738924 8.29e-01 120 chrX:6544063-6544183 3.18e-02 64_[+1(5.16e-05)]_48 chr3R:16453315-16453435 5.30e-02 14_[+2(6.55e-05)]_20_[+2(3.77e-05)]_\ 70 chr2R:9915249-9915369 6.99e-01 120 chr3R:8116117-8116237 6.12e-02 120 chr3R:17595218-17595338 7.33e-01 120 chrX:13285620-13285740 9.97e-01 120 chr2L:8220689-8220809 3.57e-01 120 chr2R:9839585-9839705 9.99e-01 120 chr3L:3252021-3252141 6.42e-01 120 chr2L:7909863-7909983 1.45e-01 120 chr3R:18243917-18244037 2.46e-02 87_[+3(1.52e-05)]_25 chrM:335-455 1.00e+00 120 chr2R:19179254-19179374 2.20e-01 120 chr3L:6550586-6550706 7.49e-01 120 chrX:8215192-8215312 2.21e-03 76_[+1(3.30e-05)]_5_[+2(1.34e-05)]_\ 23 chr3L:16670342-16670462 1.98e-01 120 chr2L:19548317-19548437 7.61e-01 120 chr2R:17452266-17452386 1.76e-02 48_[+2(1.34e-05)]_64 chr3L:14055879-14055999 5.93e-02 66_[+1(6.58e-05)]_46 chr3R:4403694-4403814 2.26e-02 105_[+3(3.00e-05)]_7 chrX:2658561-2658681 5.82e-03 120 chrX:15812313-15812433 2.27e-01 109_[+3(8.40e-05)]_3 chr3L:20349450-20349570 8.04e-02 120 chrX:6021567-6021687 5.26e-01 120 chr3L:13488416-13488536 3.38e-01 120 chrX:6255495-6255615 6.15e-01 120 chr2R:9746339-9746459 9.34e-01 120 chr2R:13941079-13941199 5.68e-02 62_[+1(5.16e-05)]_50 chrX:16598518-16598638 1.94e-01 120 chr3L:16037962-16038082 8.58e-01 120 chr2L:8126941-8127061 7.53e-01 120 chr2L:3791648-3791768 2.52e-02 69_[+2(6.55e-05)]_43 chr3R:22424211-22424331 3.02e-01 78_[+1(6.58e-05)]_34 chr2L:5294632-5294752 1.33e-01 21_[+2(6.55e-05)]_91 chr3R:22491387-22491507 8.49e-02 20_[+1(6.58e-05)]_92 chr3R:17059113-17059233 1.54e-02 69_[+2(1.34e-05)]_43 chr3R:12628673-12628793 2.06e-03 1_[+3(1.52e-05)]_[+3(1.52e-05)]_2_\ [+3(4.49e-05)]_79_[+1(3.30e-05)]_6 chr3L:8652820-8652940 3.41e-02 18_[+4(1.78e-05)]_94 chr3L:17577770-17577890 6.16e-02 120 chr2L:5983303-5983423 2.26e-01 120 chr2R:10211301-10211421 1.49e-04 34_[+3(4.49e-05)]_62_[+2(1.34e-05)]_\ [+2(1.34e-05)] chr2R:9133527-9133647 2.22e-01 120 chr2L:20794017-20794137 2.34e-01 120 chr3L:17922901-17923021 1.37e-01 48_[+3(1.52e-05)]_4_[+3(1.52e-05)]_\ [+3(1.52e-05)]_32_[+3(4.49e-05)]_4 chr2R:22179647-22179767 9.38e-01 120 chrX:12744355-12744475 1.77e-02 24_[+4(1.28e-05)]_88 chr3R:22462223-22462343 9.82e-01 120 chr2L:8095277-8095397 5.94e-01 120 chr2R:22657629-22657749 1.56e-01 87_[+1(5.16e-05)]_25 chr2L:6643562-6643682 4.83e-03 120 chr3R:20585754-20585874 3.60e-01 120 chr2L:634268-634388 2.40e-01 120 chr2R:6749286-6749406 3.12e-01 120 chrM:12131-12251 9.50e-01 120 chr3R:20765798-20765918 6.63e-03 49_[+4(1.28e-05)]_63 chr2R:18330073-18330193 3.20e-01 120 chrM:13219-13339 9.90e-01 120 chr2R:12876574-12876694 9.93e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************