******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Jarid2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:714864-714984 1.0000 120 chrX:1134786-1134906 1.0000 120 chr3L:2163737-2163857 1.0000 120 chr3R:21719536-21719656 1.0000 120 chr2L:20017173-20017293 1.0000 120 chr3L:7094823-7094943 1.0000 120 chrX:18634786-18634906 1.0000 120 chrX:9067872-9067992 1.0000 120 chrX:7065954-7066074 1.0000 120 chr2L:1555142-1555262 1.0000 120 chr2R:15482696-15482816 1.0000 120 chr2L:16794158-16794278 1.0000 120 chr2R:22478416-22478536 1.0000 120 chr3L:4073841-4073961 1.0000 120 chr3L:7605040-7605160 1.0000 120 chr2R:22372975-22373095 1.0000 120 chr2L:10544874-10544994 1.0000 120 chrX:6600063-6600183 1.0000 120 chr3L:16976312-16976432 1.0000 120 chr2L:4614190-4614310 1.0000 120 chr3R:14799013-14799133 1.0000 120 chr2R:15011410-15011530 1.0000 120 chr2L:20399275-20399395 1.0000 120 chrX:2410792-2410912 1.0000 120 chrX:836409-836529 1.0000 120 chr2L:4594891-4595011 1.0000 120 chr2L:14263020-14263140 1.0000 120 chrX:17301808-17301928 1.0000 120 chr2L:8463880-8464000 1.0000 120 chr2L:11581975-11582095 1.0000 120 chr3R:21740111-21740231 1.0000 120 chr3L:16916260-16916380 1.0000 120 chr3L:17764033-17764153 1.0000 120 chr2L:7855163-7855283 1.0000 120 chr2L:3422843-3422963 1.0000 120 chr3L:6998829-6998949 1.0000 120 chr2R:23683384-23683504 1.0000 120 chr3R:27437383-27437503 1.0000 120 chr2R:19067182-19067302 1.0000 120 chr3R:15077052-15077172 1.0000 120 chr2L:6411214-6411334 1.0000 120 chr3L:2879005-2879125 1.0000 120 chr2L:3656833-3656953 1.0000 120 chr3L:13666646-13666766 1.0000 120 chr3R:16502768-16502888 1.0000 120 chrX:2973725-2973845 1.0000 120 chr2R:21612951-21613071 1.0000 120 chr3L:21706247-21706367 1.0000 120 chr2L:3730501-3730621 1.0000 120 chr2L:20859152-20859272 1.0000 120 chr2L:14300986-14301106 1.0000 120 chrX:16695045-16695165 1.0000 120 chr2R:11106697-11106817 1.0000 120 chr2L:21618643-21618763 1.0000 120 chr3R:20204802-20204922 1.0000 120 chr2R:16386514-16386634 1.0000 120 chr3R:28891894-28892014 1.0000 120 chr3L:18304319-18304439 1.0000 120 chr3L:2255861-2255981 1.0000 120 chr3L:11136033-11136153 1.0000 120 chr2R:9658111-9658231 1.0000 120 chr2L:20223049-20223169 1.0000 120 chr3R:22899274-22899394 1.0000 120 chr2L:13977230-13977350 1.0000 120 chr2R:11790336-11790456 1.0000 120 chr2R:7187255-7187375 1.0000 120 chr2L:14334183-14334303 1.0000 120 chrX:18773914-18774034 1.0000 120 chr3L:14536157-14536277 1.0000 120 chr2R:10313889-10314009 1.0000 120 chr3R:17425760-17425880 1.0000 120 chr3L:14805110-14805230 1.0000 120 chr3R:6593213-6593333 1.0000 120 chrX:16783313-16783433 1.0000 120 chrX:6908280-6908400 1.0000 120 chr3L:18890357-18890477 1.0000 120 chrX:3836087-3836207 1.0000 120 chr3R:29377604-29377724 1.0000 120 chr2R:17265718-17265838 1.0000 120 chrX:22657261-22657381 1.0000 120 chr2R:20698489-20698609 1.0000 120 chr2L:20382188-20382308 1.0000 120 chr3R:14369874-14369994 1.0000 120 chr2R:24642119-24642239 1.0000 120 chr2R:14713505-14713625 1.0000 120 chr2R:17076031-17076151 1.0000 120 chr3L:7156964-7157084 1.0000 120 chr2R:10420979-10421099 1.0000 120 chr3R:21782411-21782531 1.0000 120 chr3L:21640-21760 1.0000 120 chr2R:22039447-22039567 1.0000 120 chr3R:11542831-11542951 1.0000 120 chrX:1338150-1338270 1.0000 120 chrX:15162922-15163042 1.0000 120 chr3R:20818794-20818914 1.0000 120 chrX:14923351-14923471 1.0000 120 chr3L:10186016-10186136 1.0000 120 chr3R:30277936-30278056 1.0000 120 chr3L:1969931-1970051 1.0000 120 chr3R:23557415-23557535 1.0000 120 chr3L:21770430-21770550 1.0000 120 chr3R:12595577-12595697 1.0000 120 chr2R:14361993-14362113 1.0000 120 chr3L:19695136-19695256 1.0000 120 chrX:3099520-3099640 1.0000 120 chr2R:6195911-6196031 1.0000 120 chr2R:12229200-12229320 1.0000 120 chr2L:10198972-10199092 1.0000 120 chr3R:11172553-11172673 1.0000 120 chr3R:8250508-8250628 1.0000 120 chr3L:1208405-1208525 1.0000 120 chr2L:2677735-2677855 1.0000 120 chr2R:22896174-22896294 1.0000 120 chrX:16835375-16835495 1.0000 120 chr2L:18782578-18782698 1.0000 120 chr2L:17131014-17131134 1.0000 120 chr3L:5902357-5902477 1.0000 120 chr3R:27157943-27158063 1.0000 120 chr3R:23346030-23346150 1.0000 120 chr2L:19820247-19820367 1.0000 120 chr3L:2400499-2400619 1.0000 120 chr2L:7157571-7157691 1.0000 120 chrX:10319385-10319505 1.0000 120 chr3R:30278137-30278257 1.0000 120 chr3L:180283-180403 1.0000 120 chr3R:24549026-24549146 1.0000 120 chr3R:11499977-11500097 1.0000 120 chr2L:15074776-15074896 1.0000 120 chr2R:23798261-23798381 1.0000 120 chr3R:4450722-4450842 1.0000 120 chrX:7226447-7226567 1.0000 120 chr2R:24334176-24334296 1.0000 120 chr2L:15035488-15035608 1.0000 120 chr3R:10972390-10972510 1.0000 120 chrX:13305542-13305662 1.0000 120 chr3L:5691401-5691521 1.0000 120 chr3L:21099977-21100097 1.0000 120 chr2R:19155221-19155341 1.0000 120 chr2R:16604103-16604223 1.0000 120 chr3L:4532051-4532171 1.0000 120 chr2R:7282527-7282647 1.0000 120 chr2L:3163647-3163767 1.0000 120 chr3R:7750006-7750126 1.0000 120 chr3L:10481428-10481548 1.0000 120 chr3R:23174015-23174135 1.0000 120 chr2R:16398937-16399057 1.0000 120 chr2R:5804704-5804824 1.0000 120 chr2L:15552662-15552782 1.0000 120 chr2R:18878405-18878525 1.0000 120 chr2L:3108037-3108157 1.0000 120 chr2L:2415209-2415329 1.0000 120 chr2L:10180200-10180320 1.0000 120 chrX:12003822-12003942 1.0000 120 chr2L:310240-310360 1.0000 120 chr2R:7106664-7106784 1.0000 120 chr2L:18503855-18503975 1.0000 120 chr2R:21234767-21234887 1.0000 120 chrX:15633342-15633462 1.0000 120 chr2L:20341848-20341968 1.0000 120 chrX:17506970-17507090 1.0000 120 chr3R:12090526-12090646 1.0000 120 chr2R:8676276-8676396 1.0000 120 chrX:20924917-20925037 1.0000 120 chr2L:12448448-12448568 1.0000 120 chr2R:15847236-15847356 1.0000 120 chr3L:3825499-3825619 1.0000 120 chr3L:12497066-12497186 1.0000 120 chr3R:26170811-26170931 1.0000 120 chr3R:18849188-18849308 1.0000 120 chrX:11807004-11807124 1.0000 120 chr3R:12477370-12477490 1.0000 120 chr3R:15476142-15476262 1.0000 120 chrX:4840859-4840979 1.0000 120 chrX:16216637-16216757 1.0000 120 chrX:5048260-5048380 1.0000 120 chrX:10930849-10930969 1.0000 120 chr3L:11197438-11197558 1.0000 120 chr2L:8898798-8898918 1.0000 120 chrX:2366266-2366386 1.0000 120 chr3L:9974619-9974739 1.0000 120 chr3L:4692768-4692888 1.0000 120 chr3L:17238075-17238195 1.0000 120 chr3L:19086214-19086334 1.0000 120 chrX:12784843-12784963 1.0000 120 chr3L:7014070-7014190 1.0000 120 chr3R:22080347-22080467 1.0000 120 chr2L:22019332-22019452 1.0000 120 chr3L:20620475-20620595 1.0000 120 chr2R:15252871-15252991 1.0000 120 chr2R:17108864-17108984 1.0000 120 chr2L:18732453-18732573 1.0000 120 chr3L:13919842-13919962 1.0000 120 chrX:7196390-7196510 1.0000 120 chr2L:18733173-18733293 1.0000 120 chr3L:14219819-14219939 1.0000 120 chr2L:7084514-7084634 1.0000 120 chr3R:28682303-28682423 1.0000 120 chr3L:17415649-17415769 1.0000 120 chr3L:19235230-19235350 1.0000 120 chr2L:13290927-13291047 1.0000 120 chr3L:1628271-1628391 1.0000 120 chr3L:18185537-18185657 1.0000 120 chr3R:26262671-26262791 1.0000 120 chr2L:2855193-2855313 1.0000 120 chr2R:18232762-18232882 1.0000 120 chr3R:16305785-16305905 1.0000 120 chr3L:16543283-16543403 1.0000 120 chr3R:26318331-26318451 1.0000 120 chr3R:22042414-22042534 1.0000 120 chr3R:20714496-20714616 1.0000 120 chr3L:2896760-2896880 1.0000 120 chr2L:8012730-8012850 1.0000 120 chr3R:13401702-13401822 1.0000 120 chr3R:26017360-26017480 1.0000 120 chr2R:18947335-18947455 1.0000 120 chr2R:13623014-13623134 1.0000 120 chr2L:5146371-5146491 1.0000 120 chrX:2036387-2036507 1.0000 120 chr3L:21048055-21048175 1.0000 120 chr2R:7098527-7098647 1.0000 120 chr3R:25329195-25329315 1.0000 120 chr3R:10686951-10687071 1.0000 120 chr3L:20695289-20695409 1.0000 120 chr2R:14435895-14436015 1.0000 120 chrX:14322163-14322283 1.0000 120 chr3R:13258675-13258795 1.0000 120 chr2L:17752432-17752552 1.0000 120 chrX:5340195-5340315 1.0000 120 chr2R:24631063-24631183 1.0000 120 chr4:1088804-1088924 1.0000 120 chr3R:25308291-25308411 1.0000 120 chr2L:5658530-5658650 1.0000 120 chr2R:21214859-21214979 1.0000 120 chr2R:13079467-13079587 1.0000 120 chr2R:17087495-17087615 1.0000 120 chr2R:17479163-17479283 1.0000 120 chrX:18930330-18930450 1.0000 120 chr3L:18139396-18139516 1.0000 120 chr2R:19356417-19356537 1.0000 120 chr2L:10457690-10457810 1.0000 120 chr3R:20978184-20978304 1.0000 120 chr2L:11582189-11582309 1.0000 120 chr3R:15537188-15537308 1.0000 120 chr3R:22042205-22042325 1.0000 120 chr3R:27988264-27988384 1.0000 120 chr3L:16572260-16572380 1.0000 120 chr2L:21107799-21107919 1.0000 120 chr3L:16957452-16957572 1.0000 120 chr3L:14205402-14205522 1.0000 120 chr3R:24894527-24894647 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Jarid2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Jarid2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.262 C 0.243 G 0.245 T 0.25 Background letter frequencies (from file dataset with add-one prior applied): A 0.262 C 0.243 G 0.245 T 0.25 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAAMHRAA MEME-1 width = 8 sites = 116 llr = 784 E-value = 3.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAMHRAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5aa234aa pos.-specific C 3::44::: probability G 2::1:6:: matrix T :::23::: bits 2.0 1.8 ** ** 1.6 ** ** 1.4 ** ** Relative 1.2 ** ** Entropy 1.0 ** *** (9.7 bits) 0.8 ** *** 0.6 *** *** 0.4 *** **** 0.2 ******** 0.0 -------- Multilevel AAACCGAA consensus C AAA sequence G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMHRAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:30277936-30278056 97 1.79e-05 AGAACTAGCA AAACCGAA TAAATCGAAG chr2R:16386514-16386634 93 1.79e-05 GCGCAGTCAG AAACCGAA ACCCAGCTAA chr3R:13258675-13258795 95 5.55e-05 GTCTCTAGCT AAACTGAA GCTAAAAGGC chr2L:8012730-8012850 10 5.55e-05 ACACACACG AAACTGAA ACTTATGGCA chr3R:16305785-16305905 28 5.55e-05 TCTAGAAAAA AAACAGAA ACCTACCTAA chrX:4840859-4840979 57 5.55e-05 CCCAGGACAC AAACAGAA GCCAACCGAT chrX:15633342-15633462 104 5.55e-05 GATCTTTGAC AAACTGAA GTTTTCAGC chr2R:18878405-18878525 93 5.55e-05 GCGCTTTAGA AAACTGAA AACCCAAAGA chr2L:18782578-18782698 6 5.55e-05 AGCAG AAACAGAA TTGTGTGGCA chr3L:10186016-10186136 85 5.55e-05 TGTCGCGCTG AAACTGAA ACAGAAACTG chrX:17301808-17301928 106 5.55e-05 GTTTAACAAC AAACAGAA AACTAAA chrX:2410792-2410912 103 5.55e-05 TCTCGCTGAC AAACTGAA GCGGTACGGG chr2L:4614190-4614310 113 5.55e-05 GTTCGCAGCC AAACTGAA chr3L:7605040-7605160 103 5.55e-05 ATAGAGTAGT AAACAGAA GTGACCAAGT chr2R:14435895-14436015 75 7.46e-05 GTGACACAAA AAACCAAA ACAAATCGCT chr2R:17108864-17108984 112 7.46e-05 GCTGTGAAAA AAACCAAA T chrX:20924917-20925037 40 7.46e-05 GAATGTGGGA AAACCAAA TCAAAACGCA chr2R:10313889-10314009 78 7.46e-05 TAGGaagcag aaaccaaa agtaaagcag chr2L:18503855-18503975 55 9.12e-05 CGCCAAGAAC CAACCGAA TTTCCCGCTT chr3L:2255861-2255981 113 9.12e-05 CCCGTTAATA CAACCGAA chr2L:6411214-6411334 80 9.12e-05 AGACTAACGA CAACCGAA CGAAACGACA chr3R:29377604-29377724 27 1.10e-04 TATTTGCGCA AAAACGAA GCGGCTCAGT chr2L:14334183-14334303 112 1.10e-04 GCGATCATCG AAAACGAA A chrX:7196390-7196510 111 1.67e-04 aaaacataca aaacaaaa gc chr2R:21234767-21234887 18 1.67e-04 gaatcgaacc gaaccgaa TCCACGTTAC chrX:12003822-12003942 17 1.67e-04 TGCAACGGCG AAACAAAA AACCGCCGCT chr3L:21099977-21100097 80 1.67e-04 tgcgagttgc gaaccgaa tcgtaccgaa chrX:10319385-10319505 35 1.67e-04 GGTTCTCCAG AAACTAAA ATGCGTATCA chrX:3836087-3836207 86 1.67e-04 GTTTAACAAC AAACAAAA CATTTTTTTC chr3L:11136033-11136153 67 1.67e-04 ATTCTAAACA AAACAAAA AAAAAACCCG chr2R:22478416-22478536 1 1.67e-04 . AAACAAAA AACACAATGT chr2L:714864-714984 7 1.67e-04 TGTTGC GAACCGAA ATCCAAATTC chr3R:24894527-24894647 12 2.21e-04 CGCCAGAAAA AAATCGAA TCGACGCGAA chr2L:21107799-21107919 102 2.21e-04 TTAAATATGC AAATCGAA CCGAAGCAAG chrX:18930330-18930450 5 2.21e-04 ATTC AAATCGAA TTTGGACTTC chr2R:13623014-13623134 112 2.21e-04 ATTTGGTGGA AAATCGAA T chr2L:2855193-2855313 110 2.21e-04 AGTTGGCGTC CAACTGAA AAA chr3L:12497066-12497186 99 2.21e-04 ATGAGTTCCG CAACTGAA CTGGCGACGA chr3R:12090526-12090646 108 2.21e-04 ACTTGGATTA CAACTGAA GCGGC chr2L:3108037-3108157 101 2.21e-04 AACCCGCCGT CAACTGAA GAGACAGCAG chr3R:23346030-23346150 75 2.21e-04 TAATTCATTC AAATCGAA TTTACCGTAG chrX:15162922-15163042 93 2.21e-04 TTCTGCAGGG CAACTGAA GCTATTTGAA chr2R:10420979-10421099 80 2.21e-04 TGATAATTGA CAACTGAA TTCCGAGTGA chr2L:20382188-20382308 101 2.21e-04 CTGTGCGGCA CAACTGAA TCAGCGGGCC chr3R:6593213-6593333 99 2.21e-04 GCGGTAAGCA CAACTGAA GCCCACGACA chr3R:20204802-20204922 26 2.21e-04 GTCGTGGACA CAACTGAA AACGTTCTGC chr2R:23683384-23683504 75 2.21e-04 AGGACTGGGG AAATCGAA AGCTTTTTTA chr2L:7855163-7855283 111 2.21e-04 ATTACAATGG CAACTGAA GT chr2L:10544874-10544994 56 2.21e-04 CGGATGCCCA AAATCGAA ATTGGTCGCG chrX:7065954-7066074 110 2.21e-04 CGTCAGAAAC CAACTGAA TTC chr3L:18185537-18185657 91 2.79e-04 TCCGCGGCTA AAAATGAA CTGTTCGCAC chr2L:20341848-20341968 82 2.79e-04 GGGCTAAGTG AAAATGAA ATCGAAAGCG chr2L:15035488-15035608 73 2.79e-04 TGAAAAATCC AAAATGAA CCCACTAGGA chr3R:30278137-30278257 31 2.79e-04 ATAAACGCAG AAAGCGAA GCAAAATGTG chr3L:21770430-21770550 105 2.79e-04 GATTCAGTAT AAAAAGAA ATAAATGT chr3L:18890357-18890477 72 2.79e-04 GAATACCGAA AAAGCGAA TGCCGGAAAA chr3R:17425760-17425880 58 2.79e-04 TGCAGGCGGA AAAAAGAA AAAGAAATCG chr3R:28891894-28892014 18 2.79e-04 CGACAACTCG AAAGCGAA TGGAGGTGCT chrX:836409-836529 23 2.79e-04 GACACGGCAA AAAAAGAA AATAGATTAT chr2L:20017173-20017293 63 2.79e-04 GCCTGGCCAA AAAATGAA TTCAAAAATC chr3R:20978184-20978304 96 3.32e-04 acgaaagaag caaccaaa acaataacaa chr3R:20714496-20714616 75 3.32e-04 TTTTCAACAC GAACTGAA TTTTCAGCGC chr3L:1628271-1628391 38 4.65e-04 TGAAATCGGG AAAGAGAA AACACGCAGA chrX:16216637-16216757 26 4.65e-04 TGCGGAGTGG CAAACGAA GTAGCGACGA chrX:13305542-13305662 45 4.65e-04 gccagagcca gaaccaaa gtagcagcta chr3L:14536157-14536277 104 4.65e-04 AACGCGCTAC GAACCAAA CTCAAACTG chr3R:22899274-22899394 18 4.65e-04 GTTTCAGTTG AAAGTGAA CCCTTCGACG chr3R:27437383-27437503 78 4.65e-04 CCCGCACGAC GAACCAAA CGCTGTGAGC chr3L:17764033-17764153 14 4.65e-04 TGTACATAAT CAAACGAA ACTTTACCAC chr2L:4594891-4595011 67 4.65e-04 ACCTTAGCCA CAAACGAA ACGCAACCGA chr3L:4073841-4073961 49 4.65e-04 GCGAATCAAT AAAGTGAA GCAGAGAAGC chr2L:10457690-10457810 104 5.22e-04 tgcaagtgaa aaatcaaa agttgaatg chrX:3099520-3099640 75 5.22e-04 ACGCTCGcag caacaaaa agccacaaat chr2R:14361993-14362113 40 5.22e-04 AAGAAACCGG CAACAAAA TGACGCAGAT chr2R:17265718-17265838 44 5.22e-04 GTCAAAAATA CAACTAAA AAAACAACAA chr3L:21048055-21048175 49 6.20e-04 TATTTATGCC AAAAAAAA AAAAATGTCT chr2L:8898798-8898918 62 6.20e-04 AGTTCGTTAT AAAGCAAA TATTAATGTG chrX:5048260-5048380 85 6.20e-04 CCCAAAGACC AAAGCAAA CCATTAAACT chr2R:16398937-16399057 47 6.20e-04 agcggaaacg gaaacgaa tgcgtcgcaa chr3L:1969931-1970051 61 6.20e-04 ATAATGACTA AAAAAAAA ACGTAGTTTC chrX:14923351-14923471 99 6.20e-04 CGGAGCTTCA AAAAAAAA CGACCTCGCG chr3R:14369874-14369994 11 6.20e-04 TTCCACGCCG AAAAAAAA GCGCAAAAAA chr2L:20223049-20223169 63 6.20e-04 AACTTCCGTC AAAGCAAA GAAGATTTCT chr2L:20859152-20859272 70 6.20e-04 TGACTTTAAA AAAAAAAA TCGTTTTCGA chr3L:6998829-6998949 107 6.20e-04 GCTCCCCTGC GAAACGAA AAACAT chrX:9067872-9067992 102 6.20e-04 TCCAGCGCTC AAAGCAAA CTGAGCTGCA chr3L:2163737-2163857 16 6.20e-04 TCAGTATTTC GAAACGAA TTCAGTTCTT chr2R:22039447-22039567 57 7.12e-04 GTGACAATCC GAACAAAA GCCACCACGA chr3L:16916260-16916380 39 7.12e-04 GCCGCGGATA CAAAAGAA TTTGCTTAGA chr3L:14219819-14219939 106 7.70e-04 CAAAATAGCC AAATTAAA AAAGGTT chr2R:23798261-23798381 46 7.70e-04 TCTCGAATTC GAATCGAA ATCAATGTCC chr2L:15074776-15074896 67 7.70e-04 ACATATTTCC AAATAAAA GGAAAAAGCT chr3R:24549026-24549146 55 7.70e-04 AGCATTTCGA AAATTAAA TATACTGAAG chr3L:16572260-16572380 47 9.21e-04 ACTTGGTAAA CAATTGAA GTTGGGCAGT chr3R:26318331-26318451 80 9.21e-04 AACGCTTGAG CAAACAAA GCCGAGAACC chr2L:18733173-18733293 77 9.21e-04 GGGTGCACCT AAAGAAAA AGAGATTACT chr3L:19086214-19086334 96 9.21e-04 GAATATTTCC CAAACAAA TAGGTAATTA chr2R:6195911-6196031 19 9.21e-04 GGATCGAAAA GAAAAGAA ACGGATGCGA chr3L:14805110-14805230 113 9.21e-04 TCAGAGAGCG AAAGAAAA chrX:2973725-2973845 76 9.21e-04 CCGCCGCTAC GAAGCGAA CGGTACGAGC chr2L:8463880-8464000 106 9.21e-04 AGTCCGCGGG CAATTGAA AAAGCTC chr2R:18947335-18947455 71 1.03e-03 ATAGTTCGCA GAATAGAA CACCCAGCAA chr3R:12477370-12477490 110 1.03e-03 TTGCTTGTTT GAATTGAA TTG chr3L:13666646-13666766 33 1.03e-03 ATGCGTTTCT GAATTGAA GAACAAATGT chr3R:25308291-25308411 85 1.12e-03 TTTCTAACGA CAAGCAAA TACTGAACTC chr3R:10686951-10687071 50 1.12e-03 AGTGGAACCC CAAAAAAA GATCCCTGGA chrX:2036387-2036507 33 1.12e-03 TGTCGCTTGC GAAGAGAA AGACCCGCTC chr2R:15847236-15847356 5 1.12e-03 TCAC CAAAAAAA GATGTCGTGA chr2L:17131014-17131134 54 1.12e-03 TTTCAACTTT GAAGTGAA CGCACGTCAT chrX:16783313-16783433 33 1.14e-03 ACGCGAATTT GAATCAAA ACTGGCGCCC chr2L:3163647-3163767 7 1.24e-03 GCAGTT GAAAAAAA TCGCAGCAGG chr3R:22042205-22042325 89 1.31e-03 TCCCCGACTC GAATAAAA TCCATATACA chr3R:21719536-21719656 61 1.31e-03 GTTTTGGTTC GAATAAAA AATAGCTACT chr2L:10198972-10199092 98 1.35e-03 ATCTTCGCGA GAAGAAAA GGCCAACCGA chr3L:17238075-17238195 54 1.40e-03 AGTAATATAG AAACTGCA ACGGTTAGTG chrX:6908280-6908400 74 1.40e-03 CTCGGGCGgc aaacagca atagcaactt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMHRAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30277936-30278056 1.8e-05 96_[+1]_16 chr2R:16386514-16386634 1.8e-05 92_[+1]_20 chr3R:13258675-13258795 5.5e-05 94_[+1]_18 chr2L:8012730-8012850 5.5e-05 9_[+1]_103 chr3R:16305785-16305905 5.5e-05 27_[+1]_85 chrX:4840859-4840979 5.5e-05 56_[+1]_56 chrX:15633342-15633462 5.5e-05 103_[+1]_9 chr2R:18878405-18878525 5.5e-05 92_[+1]_20 chr2L:18782578-18782698 5.5e-05 5_[+1]_107 chr3L:10186016-10186136 5.5e-05 84_[+1]_28 chrX:17301808-17301928 5.5e-05 105_[+1]_7 chrX:2410792-2410912 5.5e-05 102_[+1]_10 chr2L:4614190-4614310 5.5e-05 112_[+1] chr3L:7605040-7605160 5.5e-05 102_[+1]_10 chr2R:14435895-14436015 7.5e-05 74_[+1]_38 chr2R:17108864-17108984 7.5e-05 111_[+1]_1 chrX:20924917-20925037 7.5e-05 39_[+1]_73 chr2R:10313889-10314009 7.5e-05 77_[+1]_35 chr2L:18503855-18503975 9.1e-05 54_[+1]_58 chr3L:2255861-2255981 9.1e-05 112_[+1] chr2L:6411214-6411334 9.1e-05 79_[+1]_33 chr3R:29377604-29377724 0.00011 26_[+1]_86 chr2L:14334183-14334303 0.00011 111_[+1]_1 chrX:7196390-7196510 0.00017 110_[+1]_2 chr2R:21234767-21234887 0.00017 17_[+1]_95 chrX:12003822-12003942 0.00017 16_[+1]_96 chr3L:21099977-21100097 0.00017 79_[+1]_33 chrX:10319385-10319505 0.00017 34_[+1]_78 chrX:3836087-3836207 0.00017 85_[+1]_27 chr3L:11136033-11136153 0.00017 66_[+1]_46 chr2R:22478416-22478536 0.00017 [+1]_112 chr2L:714864-714984 0.00017 6_[+1]_106 chr3R:24894527-24894647 0.00022 11_[+1]_101 chr2L:21107799-21107919 0.00022 101_[+1]_11 chrX:18930330-18930450 0.00022 4_[+1]_108 chr2R:13623014-13623134 0.00022 111_[+1]_1 chr2L:2855193-2855313 0.00022 109_[+1]_3 chr3L:12497066-12497186 0.00022 98_[+1]_14 chr3R:12090526-12090646 0.00022 107_[+1]_5 chr2L:3108037-3108157 0.00022 100_[+1]_12 chr3R:23346030-23346150 0.00022 74_[+1]_38 chrX:15162922-15163042 0.00022 92_[+1]_20 chr2R:10420979-10421099 0.00022 79_[+1]_33 chr2L:20382188-20382308 0.00022 100_[+1]_12 chr3R:6593213-6593333 0.00022 98_[+1]_14 chr3R:20204802-20204922 0.00022 25_[+1]_87 chr2R:23683384-23683504 0.00022 74_[+1]_38 chr2L:7855163-7855283 0.00022 110_[+1]_2 chr2L:10544874-10544994 0.00022 55_[+1]_57 chrX:7065954-7066074 0.00022 109_[+1]_3 chr3L:18185537-18185657 0.00028 90_[+1]_22 chr2L:20341848-20341968 0.00028 81_[+1]_31 chr2L:15035488-15035608 0.00028 72_[+1]_40 chr3R:30278137-30278257 0.00028 30_[+1]_82 chr3L:21770430-21770550 0.00028 104_[+1]_8 chr3L:18890357-18890477 0.00028 71_[+1]_41 chr3R:17425760-17425880 0.00028 57_[+1]_55 chr3R:28891894-28892014 0.00028 17_[+1]_95 chrX:836409-836529 0.00028 22_[+1]_90 chr2L:20017173-20017293 0.00028 62_[+1]_50 chr3R:20978184-20978304 0.00033 95_[+1]_17 chr3R:20714496-20714616 0.00033 74_[+1]_38 chr3L:1628271-1628391 0.00047 37_[+1]_75 chrX:16216637-16216757 0.00047 25_[+1]_87 chrX:13305542-13305662 0.00047 44_[+1]_68 chr3L:14536157-14536277 0.00047 103_[+1]_9 chr3R:22899274-22899394 0.00047 17_[+1]_95 chr3R:27437383-27437503 0.00047 77_[+1]_35 chr3L:17764033-17764153 0.00047 13_[+1]_99 chr2L:4594891-4595011 0.00047 66_[+1]_46 chr3L:4073841-4073961 0.00047 48_[+1]_64 chr2L:10457690-10457810 0.00052 103_[+1]_9 chrX:3099520-3099640 0.00052 74_[+1]_38 chr2R:14361993-14362113 0.00052 39_[+1]_73 chr2R:17265718-17265838 0.00052 43_[+1]_69 chr3L:21048055-21048175 0.00062 48_[+1]_64 chr2L:8898798-8898918 0.00062 61_[+1]_51 chrX:5048260-5048380 0.00062 84_[+1]_28 chr2R:16398937-16399057 0.00062 46_[+1]_66 chr3L:1969931-1970051 0.00062 60_[+1]_52 chrX:14923351-14923471 0.00062 98_[+1]_14 chr3R:14369874-14369994 0.00062 10_[+1]_102 chr2L:20223049-20223169 0.00062 62_[+1]_50 chr2L:20859152-20859272 0.00062 69_[+1]_43 chr3L:6998829-6998949 0.00062 106_[+1]_6 chrX:9067872-9067992 0.00062 101_[+1]_11 chr3L:2163737-2163857 0.00062 15_[+1]_97 chr2R:22039447-22039567 0.00071 56_[+1]_56 chr3L:16916260-16916380 0.00071 38_[+1]_74 chr3L:14219819-14219939 0.00077 105_[+1]_7 chr2R:23798261-23798381 0.00077 45_[+1]_67 chr2L:15074776-15074896 0.00077 66_[+1]_46 chr3R:24549026-24549146 0.00077 54_[+1]_58 chr3L:16572260-16572380 0.00092 46_[+1]_66 chr3R:26318331-26318451 0.00092 79_[+1]_33 chr2L:18733173-18733293 0.00092 76_[+1]_36 chr3L:19086214-19086334 0.00092 95_[+1]_17 chr2R:6195911-6196031 0.00092 18_[+1]_94 chr3L:14805110-14805230 0.00092 112_[+1] chrX:2973725-2973845 0.00092 75_[+1]_37 chr2L:8463880-8464000 0.00092 105_[+1]_7 chr2R:18947335-18947455 0.001 70_[+1]_42 chr3R:12477370-12477490 0.001 109_[+1]_3 chr3L:13666646-13666766 0.001 32_[+1]_80 chr3R:25308291-25308411 0.0011 84_[+1]_28 chr3R:10686951-10687071 0.0011 49_[+1]_63 chrX:2036387-2036507 0.0011 32_[+1]_80 chr2R:15847236-15847356 0.0011 4_[+1]_108 chr2L:17131014-17131134 0.0011 53_[+1]_59 chrX:16783313-16783433 0.0011 32_[+1]_80 chr2L:3163647-3163767 0.0012 6_[+1]_106 chr3R:22042205-22042325 0.0013 88_[+1]_24 chr3R:21719536-21719656 0.0013 60_[+1]_52 chr2L:10198972-10199092 0.0014 97_[+1]_15 chr3L:17238075-17238195 0.0014 53_[+1]_59 chrX:6908280-6908400 0.0014 73_[+1]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMHRAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAMHRAA width=8 seqs=116 chr3R:30277936-30278056 ( 97) AAACCGAA 1 chr2R:16386514-16386634 ( 93) AAACCGAA 1 chr3R:13258675-13258795 ( 95) AAACTGAA 1 chr2L:8012730-8012850 ( 10) AAACTGAA 1 chr3R:16305785-16305905 ( 28) AAACAGAA 1 chrX:4840859-4840979 ( 57) AAACAGAA 1 chrX:15633342-15633462 ( 104) AAACTGAA 1 chr2R:18878405-18878525 ( 93) AAACTGAA 1 chr2L:18782578-18782698 ( 6) AAACAGAA 1 chr3L:10186016-10186136 ( 85) AAACTGAA 1 chrX:17301808-17301928 ( 106) AAACAGAA 1 chrX:2410792-2410912 ( 103) AAACTGAA 1 chr2L:4614190-4614310 ( 113) AAACTGAA 1 chr3L:7605040-7605160 ( 103) AAACAGAA 1 chr2R:14435895-14436015 ( 75) AAACCAAA 1 chr2R:17108864-17108984 ( 112) AAACCAAA 1 chrX:20924917-20925037 ( 40) AAACCAAA 1 chr2R:10313889-10314009 ( 78) AAACCAAA 1 chr2L:18503855-18503975 ( 55) CAACCGAA 1 chr3L:2255861-2255981 ( 113) CAACCGAA 1 chr2L:6411214-6411334 ( 80) CAACCGAA 1 chr3R:29377604-29377724 ( 27) AAAACGAA 1 chr2L:14334183-14334303 ( 112) AAAACGAA 1 chrX:7196390-7196510 ( 111) AAACAAAA 1 chr2R:21234767-21234887 ( 18) GAACCGAA 1 chrX:12003822-12003942 ( 17) AAACAAAA 1 chr3L:21099977-21100097 ( 80) GAACCGAA 1 chrX:10319385-10319505 ( 35) AAACTAAA 1 chrX:3836087-3836207 ( 86) AAACAAAA 1 chr3L:11136033-11136153 ( 67) AAACAAAA 1 chr2R:22478416-22478536 ( 1) AAACAAAA 1 chr2L:714864-714984 ( 7) GAACCGAA 1 chr3R:24894527-24894647 ( 12) AAATCGAA 1 chr2L:21107799-21107919 ( 102) AAATCGAA 1 chrX:18930330-18930450 ( 5) AAATCGAA 1 chr2R:13623014-13623134 ( 112) AAATCGAA 1 chr2L:2855193-2855313 ( 110) CAACTGAA 1 chr3L:12497066-12497186 ( 99) CAACTGAA 1 chr3R:12090526-12090646 ( 108) CAACTGAA 1 chr2L:3108037-3108157 ( 101) CAACTGAA 1 chr3R:23346030-23346150 ( 75) AAATCGAA 1 chrX:15162922-15163042 ( 93) CAACTGAA 1 chr2R:10420979-10421099 ( 80) CAACTGAA 1 chr2L:20382188-20382308 ( 101) CAACTGAA 1 chr3R:6593213-6593333 ( 99) CAACTGAA 1 chr3R:20204802-20204922 ( 26) CAACTGAA 1 chr2R:23683384-23683504 ( 75) AAATCGAA 1 chr2L:7855163-7855283 ( 111) CAACTGAA 1 chr2L:10544874-10544994 ( 56) AAATCGAA 1 chrX:7065954-7066074 ( 110) CAACTGAA 1 chr3L:18185537-18185657 ( 91) AAAATGAA 1 chr2L:20341848-20341968 ( 82) AAAATGAA 1 chr2L:15035488-15035608 ( 73) AAAATGAA 1 chr3R:30278137-30278257 ( 31) AAAGCGAA 1 chr3L:21770430-21770550 ( 105) AAAAAGAA 1 chr3L:18890357-18890477 ( 72) AAAGCGAA 1 chr3R:17425760-17425880 ( 58) AAAAAGAA 1 chr3R:28891894-28892014 ( 18) AAAGCGAA 1 chrX:836409-836529 ( 23) AAAAAGAA 1 chr2L:20017173-20017293 ( 63) AAAATGAA 1 chr3R:20978184-20978304 ( 96) CAACCAAA 1 chr3R:20714496-20714616 ( 75) GAACTGAA 1 chr3L:1628271-1628391 ( 38) AAAGAGAA 1 chrX:16216637-16216757 ( 26) CAAACGAA 1 chrX:13305542-13305662 ( 45) GAACCAAA 1 chr3L:14536157-14536277 ( 104) GAACCAAA 1 chr3R:22899274-22899394 ( 18) AAAGTGAA 1 chr3R:27437383-27437503 ( 78) GAACCAAA 1 chr3L:17764033-17764153 ( 14) CAAACGAA 1 chr2L:4594891-4595011 ( 67) CAAACGAA 1 chr3L:4073841-4073961 ( 49) AAAGTGAA 1 chr2L:10457690-10457810 ( 104) AAATCAAA 1 chrX:3099520-3099640 ( 75) CAACAAAA 1 chr2R:14361993-14362113 ( 40) CAACAAAA 1 chr2R:17265718-17265838 ( 44) CAACTAAA 1 chr3L:21048055-21048175 ( 49) AAAAAAAA 1 chr2L:8898798-8898918 ( 62) AAAGCAAA 1 chrX:5048260-5048380 ( 85) AAAGCAAA 1 chr2R:16398937-16399057 ( 47) GAAACGAA 1 chr3L:1969931-1970051 ( 61) AAAAAAAA 1 chrX:14923351-14923471 ( 99) AAAAAAAA 1 chr3R:14369874-14369994 ( 11) AAAAAAAA 1 chr2L:20223049-20223169 ( 63) AAAGCAAA 1 chr2L:20859152-20859272 ( 70) AAAAAAAA 1 chr3L:6998829-6998949 ( 107) GAAACGAA 1 chrX:9067872-9067992 ( 102) AAAGCAAA 1 chr3L:2163737-2163857 ( 16) GAAACGAA 1 chr2R:22039447-22039567 ( 57) GAACAAAA 1 chr3L:16916260-16916380 ( 39) CAAAAGAA 1 chr3L:14219819-14219939 ( 106) AAATTAAA 1 chr2R:23798261-23798381 ( 46) GAATCGAA 1 chr2L:15074776-15074896 ( 67) AAATAAAA 1 chr3R:24549026-24549146 ( 55) AAATTAAA 1 chr3L:16572260-16572380 ( 47) CAATTGAA 1 chr3R:26318331-26318451 ( 80) CAAACAAA 1 chr2L:18733173-18733293 ( 77) AAAGAAAA 1 chr3L:19086214-19086334 ( 96) CAAACAAA 1 chr2R:6195911-6196031 ( 19) GAAAAGAA 1 chr3L:14805110-14805230 ( 113) AAAGAAAA 1 chrX:2973725-2973845 ( 76) GAAGCGAA 1 chr2L:8463880-8464000 ( 106) CAATTGAA 1 chr2R:18947335-18947455 ( 71) GAATAGAA 1 chr3R:12477370-12477490 ( 110) GAATTGAA 1 chr3L:13666646-13666766 ( 33) GAATTGAA 1 chr3R:25308291-25308411 ( 85) CAAGCAAA 1 chr3R:10686951-10687071 ( 50) CAAAAAAA 1 chrX:2036387-2036507 ( 33) GAAGAGAA 1 chr2R:15847236-15847356 ( 5) CAAAAAAA 1 chr2L:17131014-17131134 ( 54) GAAGTGAA 1 chrX:16783313-16783433 ( 33) GAATCAAA 1 chr2L:3163647-3163767 ( 7) GAAAAAAA 1 chr3R:22042205-22042325 ( 89) GAATAAAA 1 chr3R:21719536-21719656 ( 61) GAATAAAA 1 chr2L:10198972-10199092 ( 98) GAAGAAAA 1 chr3L:17238075-17238195 ( 54) AAACTGCA 1 chrX:6908280-6908400 ( 74) AAACAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMHRAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.17466 E= 3.5e-007 105 4 -24 -1350 193 -1350 -1350 -1350 193 -1350 -1350 -1350 -17 88 -74 -53 24 67 -1350 27 50 -1350 136 -1350 191 -382 -1350 -1350 193 -1350 -1350 -1350 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMHRAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 116 E= 3.5e-007 0.543103 0.250000 0.206897 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.232759 0.448276 0.146552 0.172414 0.310345 0.387931 0.000000 0.301724 0.370690 0.000000 0.629310 0.000000 0.982759 0.017241 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMHRAA MEME-1 regular expression -------------------------------------------------------------------------------- [ACG]AA[CA][CAT][GA]AA -------------------------------------------------------------------------------- Time 7.72 secs. ******************************************************************************** ******************************************************************************** MOTIF CGMKCGCK MEME-2 width = 8 sites = 73 llr = 553 E-value = 1.9e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGMKCGCK MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::4::::: pos.-specific C a:4:7:7: probability G :a:5:a:5 matrix T ::253:35 bits 2.0 ** * 1.8 ** * 1.6 ** * 1.4 ** * Relative 1.2 ** ** Entropy 1.0 ** ***** (10.9 bits) 0.8 ** ***** 0.6 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGAGCGCT consensus CTT TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGMKCGCK MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:5658530-5658650 110 5.27e-05 TGTCGACTAC CGAGCGCT CTT chr2L:13290927-13291047 35 5.27e-05 AGCGGAGTCG CGAGCGCG CCAAACACTC chr3L:13919842-13919962 38 5.27e-05 GAGCGTAAAA CGCGCGCG AGACACACAC chrX:17506970-17507090 70 5.27e-05 CAAACGCAGA CGCGCGCG AAACAGCGAA chr3R:11499977-11500097 27 5.27e-05 ACACACGCAA CGAGCGCT GACAAACCGG chr3L:180283-180403 28 5.27e-05 GCGAAGATAC CGAGCGCG CTGGTAAGGC chr2L:17131014-17131134 78 5.27e-05 TCATTTTTGT CGCGCGCG TTGTTACAAT chr3L:7156964-7157084 77 5.27e-05 GAAAAAACAG CGCGCGCT GCTGCGCTCT chrX:6908280-6908400 35 5.27e-05 CAGTTGCAAG CGAGCGCT CACCGTGTGT chrX:16783313-16783433 72 5.27e-05 GTTTCGAACG CGAGCGCT CCGCACTTTA chr2R:7187255-7187375 68 5.27e-05 ATCGATCGAT CGCGCGCT CTTCGGCTAT chr3R:22899274-22899394 50 5.27e-05 TGACACGAAT CGCGCGCG ACTCGTTCTA chrX:16695045-16695165 79 5.27e-05 ATACACTTTC CGCGCGCT TTTACTGATG chr2L:14300986-14301106 29 5.27e-05 AATGGGACGA CGCGCGCG TTTGGATTCA chrX:6600063-6600183 21 5.27e-05 CAACCGACAC CGCGCGCT GATGGTTGTG chrX:2036387-2036507 46 1.07e-04 GAGAAAGACC CGCTCGCG TTGATAGCCA chr2R:18947335-18947455 30 1.07e-04 TGTCCCATTG CGATCGCG AGTTCAGAAC chr3L:16543283-16543403 29 1.07e-04 ATTTGTATCT CGCTCGCT CGCACTCACT chr2L:7084514-7084634 92 1.07e-04 AGCATGCGAC CGATCGCT TCGAGTTCCA chr2R:7106664-7106784 108 1.07e-04 CGTATCAATC CGATCGCG AGTGC chr3L:4532051-4532171 15 1.07e-04 ATCTGCCTCT CGCTCGCT CTCGTTCGAA chrX:15162922-15163042 70 1.07e-04 CTGCATGAAC CGATCGCT TGGAATTCTG chr2L:20382188-20382308 78 1.07e-04 ACACAAGAAC CGCTCGCG TTAACCTGTG chr3L:21706247-21706367 85 1.07e-04 CTAAAACGTC CGCTCGCT CCGATCGACC chr2L:3656833-3656953 71 1.07e-04 ATTCCAAGCA CGATCGCG ACAAATGACA chrX:7065954-7066074 36 1.07e-04 GCCAAAAATT CGCTCGCG CTTTTGGGGG chr2L:714864-714984 69 1.07e-04 GAATTTTCTC CGCTCGCT GCGATTCTCC chr3L:14205402-14205522 37 1.61e-04 TCGCTGTAAC CGCGTGCG GATGTCAGGA chr2L:11582189-11582309 110 1.61e-04 AAGAATTTTC CGAGTGCG CCG chrX:14322163-14322283 31 1.61e-04 TTTCGAGCCG CGAGTGCT CGGCGGTTCA chr3L:7014070-7014190 12 1.61e-04 CCTTGGGCTG CGAGTGCG TTTACCTTTT chr3L:21099977-21100097 66 1.61e-04 aattcgaatg cgagtgcg agttgcgaac chr3L:2400499-2400619 34 1.61e-04 CTAGAAAGCG CGAGTGCT CGTGACGGAT chr3R:11542831-11542951 105 1.61e-04 CATCAGGATT CGCGTGCT GGAACTGA chr2R:10313889-10314009 60 1.61e-04 TTTCCTTGCT CGCGTGCT TAGGaagcag chr2L:14263020-14263140 58 1.61e-04 CGACGGGTCT CGAGTGCT GTGCTTTGCC chr3R:24894527-24894647 112 2.97e-04 CATCTTAGCC CGCTTGCT T chr2R:19356417-19356537 90 2.97e-04 CCAAAAGCTT CGAGCGTT GAAACGCGAC chr2R:13623014-13623134 40 2.97e-04 GTTCAGTTTG CGAGCGTT GGTCGTCAGC chr3R:26017360-26017480 65 2.97e-04 TCGTGGACAG CGAGCGTT GCGTGTGCGC chr2L:2855193-2855313 87 2.97e-04 CGAAGCGAAC CGATTGCT TCCAAAGTTG chr3L:20620475-20620595 46 2.97e-04 gacgtgcgat cgagcgtg cgagcaagaa chr2L:2415209-2415329 91 2.97e-04 ACGTGTGATT CGATTGCG CTCCGGCGAG chr2R:7282527-7282647 58 2.97e-04 CAGTTTGAGT CGAGCGTT CGAACGGTGC chr3L:14536157-14536277 82 2.97e-04 ACTACTACAG CGCGCGTG TGCGAACGCG chr2L:14334183-14334303 7 2.97e-04 TCTGGT CGCGCGTT CGTGCTGCTC chr2L:13977230-13977350 97 2.97e-04 TAGAACTCGT CGCGCGTG GACGTAGATT chr3R:20204802-20204922 105 2.97e-04 TCATCGCCGC CGTGCGCG TGTGTTGG chr2R:11106697-11106817 26 2.97e-04 CCGATAACTG CGATTGCG ACTGCGACTG chr2L:6411214-6411334 25 2.97e-04 gattcaaaag cgattgcg actgcgactg chr2L:7855163-7855283 88 2.97e-04 AAACGCGTGC CGATTGCG TTGGCATTAC chr3L:4073841-4073961 75 2.97e-04 GCGGAAAAAG CGTGCGCG GAGCCAGAGT chr3R:27988264-27988384 91 3.79e-04 GATCGACACG CGTTCGCT TTGAGAATCC chr3R:22042205-22042325 69 3.79e-04 TCCCGAGATC CGTTCGCT ATTCCCCGAC chr2R:17479163-17479283 25 3.79e-04 ATGTGAGTAG CGATCGTT GGTATTTGGT chr3R:20714496-20714616 30 3.79e-04 CAGTTTTCTC CGCTCGTT CGAATTGGCA chr2R:5804704-5804824 63 3.79e-04 GCGACGGCAT CGCTCGTT ACCCCATTAG chr3R:30278137-30278257 92 3.79e-04 TGAGAGCGAA CGATCGTG TGAGAGGGAG chr2L:19820247-19820367 50 3.79e-04 TCGACGCACG CGTTCGCG TTTCACATCA chr3R:30277936-30278056 57 3.79e-04 CTGCGTGCGC CGCTCGTG GTGGGAAAAA chr3R:29377604-29377724 101 3.79e-04 GGACTTCGTG CGTTCGCG TCGCGTGTGT chrX:3836087-3836207 24 3.79e-04 CTTCGTAAGA CGTTCGCT CAGTAGCCGT chr3L:18139396-18139516 82 4.61e-04 CTGTTGCTTT CGCGTGTG TTACCTGTAT chrX:20924917-20925037 68 4.61e-04 GACCCGTGAA CGTGTGCG AACACGCGGA chr2R:24334176-24334296 8 4.61e-04 ACACGTA CGTGTGCT GGTGTTAGAA chr2L:18782578-18782698 75 4.61e-04 CAGCGAAAAG CGAGTGTG ATTTTCCGAT chr2R:16386514-16386634 43 4.61e-04 GAACGGTCAT CGTGTGCG GATGTTAAGC chr3L:16976312-16976432 81 4.61e-04 CACTCCTCTG CGCGTGTT TTTGTGTTTG chr3R:12477370-12477490 57 5.73e-04 ACTCCTTCTG CGCTTGTT TATTTGCTTA chr3R:20818794-20818914 42 5.73e-04 TATGCAGCAG CGATTGTT TATTTCATAT chr3L:18304319-18304439 49 5.73e-04 TTTTCGCTTC CGCTTGTT ATTCAATGTT chrX:15633342-15633462 76 6.00e-04 TCTCTAGCGT CGTTCGTT CGGTCGTCGC chr3R:23557415-23557535 94 6.00e-04 CTGAGGTCCA CGTTCGTG TGTCAGAGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGMKCGCK MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:5658530-5658650 5.3e-05 109_[+2]_3 chr2L:13290927-13291047 5.3e-05 34_[+2]_78 chr3L:13919842-13919962 5.3e-05 37_[+2]_75 chrX:17506970-17507090 5.3e-05 69_[+2]_43 chr3R:11499977-11500097 5.3e-05 26_[+2]_86 chr3L:180283-180403 5.3e-05 27_[+2]_85 chr2L:17131014-17131134 5.3e-05 77_[+2]_35 chr3L:7156964-7157084 5.3e-05 76_[+2]_36 chrX:6908280-6908400 5.3e-05 34_[+2]_78 chrX:16783313-16783433 5.3e-05 71_[+2]_41 chr2R:7187255-7187375 5.3e-05 67_[+2]_45 chr3R:22899274-22899394 5.3e-05 49_[+2]_63 chrX:16695045-16695165 5.3e-05 78_[+2]_34 chr2L:14300986-14301106 5.3e-05 28_[+2]_84 chrX:6600063-6600183 5.3e-05 20_[+2]_92 chrX:2036387-2036507 0.00011 45_[+2]_67 chr2R:18947335-18947455 0.00011 29_[+2]_83 chr3L:16543283-16543403 0.00011 28_[+2]_84 chr2L:7084514-7084634 0.00011 91_[+2]_21 chr2R:7106664-7106784 0.00011 107_[+2]_5 chr3L:4532051-4532171 0.00011 14_[+2]_98 chrX:15162922-15163042 0.00011 69_[+2]_43 chr2L:20382188-20382308 0.00011 77_[+2]_35 chr3L:21706247-21706367 0.00011 84_[+2]_28 chr2L:3656833-3656953 0.00011 70_[+2]_42 chrX:7065954-7066074 0.00011 35_[+2]_77 chr2L:714864-714984 0.00011 68_[+2]_44 chr3L:14205402-14205522 0.00016 36_[+2]_76 chr2L:11582189-11582309 0.00016 109_[+2]_3 chrX:14322163-14322283 0.00016 30_[+2]_82 chr3L:7014070-7014190 0.00016 11_[+2]_101 chr3L:21099977-21100097 0.00016 65_[+2]_47 chr3L:2400499-2400619 0.00016 33_[+2]_79 chr3R:11542831-11542951 0.00016 104_[+2]_8 chr2R:10313889-10314009 0.00016 59_[+2]_53 chr2L:14263020-14263140 0.00016 57_[+2]_55 chr3R:24894527-24894647 0.0003 111_[+2]_1 chr2R:19356417-19356537 0.0003 89_[+2]_23 chr2R:13623014-13623134 0.0003 39_[+2]_73 chr3R:26017360-26017480 0.0003 64_[+2]_48 chr2L:2855193-2855313 0.0003 86_[+2]_26 chr3L:20620475-20620595 0.0003 45_[+2]_67 chr2L:2415209-2415329 0.0003 90_[+2]_22 chr2R:7282527-7282647 0.0003 57_[+2]_55 chr3L:14536157-14536277 0.0003 81_[+2]_31 chr2L:14334183-14334303 0.0003 6_[+2]_106 chr2L:13977230-13977350 0.0003 96_[+2]_16 chr3R:20204802-20204922 0.0003 104_[+2]_8 chr2R:11106697-11106817 0.0003 25_[+2]_87 chr2L:6411214-6411334 0.0003 24_[+2]_88 chr2L:7855163-7855283 0.0003 87_[+2]_25 chr3L:4073841-4073961 0.0003 74_[+2]_38 chr3R:27988264-27988384 0.00038 90_[+2]_22 chr3R:22042205-22042325 0.00038 68_[+2]_44 chr2R:17479163-17479283 0.00038 24_[+2]_88 chr3R:20714496-20714616 0.00038 29_[+2]_83 chr2R:5804704-5804824 0.00038 62_[+2]_50 chr3R:30278137-30278257 0.00038 91_[+2]_21 chr2L:19820247-19820367 0.00038 49_[+2]_63 chr3R:30277936-30278056 0.00038 56_[+2]_56 chr3R:29377604-29377724 0.00038 100_[+2]_12 chrX:3836087-3836207 0.00038 23_[+2]_89 chr3L:18139396-18139516 0.00046 81_[+2]_31 chrX:20924917-20925037 0.00046 67_[+2]_45 chr2R:24334176-24334296 0.00046 7_[+2]_105 chr2L:18782578-18782698 0.00046 74_[+2]_38 chr2R:16386514-16386634 0.00046 42_[+2]_70 chr3L:16976312-16976432 0.00046 80_[+2]_32 chr3R:12477370-12477490 0.00057 56_[+2]_56 chr3R:20818794-20818914 0.00057 41_[+2]_71 chr3L:18304319-18304439 0.00057 48_[+2]_64 chrX:15633342-15633462 0.0006 75_[+2]_37 chr3R:23557415-23557535 0.0006 93_[+2]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGMKCGCK MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGMKCGCK width=8 seqs=73 chr2L:5658530-5658650 ( 110) CGAGCGCT 1 chr2L:13290927-13291047 ( 35) CGAGCGCG 1 chr3L:13919842-13919962 ( 38) CGCGCGCG 1 chrX:17506970-17507090 ( 70) CGCGCGCG 1 chr3R:11499977-11500097 ( 27) CGAGCGCT 1 chr3L:180283-180403 ( 28) CGAGCGCG 1 chr2L:17131014-17131134 ( 78) CGCGCGCG 1 chr3L:7156964-7157084 ( 77) CGCGCGCT 1 chrX:6908280-6908400 ( 35) CGAGCGCT 1 chrX:16783313-16783433 ( 72) CGAGCGCT 1 chr2R:7187255-7187375 ( 68) CGCGCGCT 1 chr3R:22899274-22899394 ( 50) CGCGCGCG 1 chrX:16695045-16695165 ( 79) CGCGCGCT 1 chr2L:14300986-14301106 ( 29) CGCGCGCG 1 chrX:6600063-6600183 ( 21) CGCGCGCT 1 chrX:2036387-2036507 ( 46) CGCTCGCG 1 chr2R:18947335-18947455 ( 30) CGATCGCG 1 chr3L:16543283-16543403 ( 29) CGCTCGCT 1 chr2L:7084514-7084634 ( 92) CGATCGCT 1 chr2R:7106664-7106784 ( 108) CGATCGCG 1 chr3L:4532051-4532171 ( 15) CGCTCGCT 1 chrX:15162922-15163042 ( 70) CGATCGCT 1 chr2L:20382188-20382308 ( 78) CGCTCGCG 1 chr3L:21706247-21706367 ( 85) CGCTCGCT 1 chr2L:3656833-3656953 ( 71) CGATCGCG 1 chrX:7065954-7066074 ( 36) CGCTCGCG 1 chr2L:714864-714984 ( 69) CGCTCGCT 1 chr3L:14205402-14205522 ( 37) CGCGTGCG 1 chr2L:11582189-11582309 ( 110) CGAGTGCG 1 chrX:14322163-14322283 ( 31) CGAGTGCT 1 chr3L:7014070-7014190 ( 12) CGAGTGCG 1 chr3L:21099977-21100097 ( 66) CGAGTGCG 1 chr3L:2400499-2400619 ( 34) CGAGTGCT 1 chr3R:11542831-11542951 ( 105) CGCGTGCT 1 chr2R:10313889-10314009 ( 60) CGCGTGCT 1 chr2L:14263020-14263140 ( 58) CGAGTGCT 1 chr3R:24894527-24894647 ( 112) CGCTTGCT 1 chr2R:19356417-19356537 ( 90) CGAGCGTT 1 chr2R:13623014-13623134 ( 40) CGAGCGTT 1 chr3R:26017360-26017480 ( 65) CGAGCGTT 1 chr2L:2855193-2855313 ( 87) CGATTGCT 1 chr3L:20620475-20620595 ( 46) CGAGCGTG 1 chr2L:2415209-2415329 ( 91) CGATTGCG 1 chr2R:7282527-7282647 ( 58) CGAGCGTT 1 chr3L:14536157-14536277 ( 82) CGCGCGTG 1 chr2L:14334183-14334303 ( 7) CGCGCGTT 1 chr2L:13977230-13977350 ( 97) CGCGCGTG 1 chr3R:20204802-20204922 ( 105) CGTGCGCG 1 chr2R:11106697-11106817 ( 26) CGATTGCG 1 chr2L:6411214-6411334 ( 25) CGATTGCG 1 chr2L:7855163-7855283 ( 88) CGATTGCG 1 chr3L:4073841-4073961 ( 75) CGTGCGCG 1 chr3R:27988264-27988384 ( 91) CGTTCGCT 1 chr3R:22042205-22042325 ( 69) CGTTCGCT 1 chr2R:17479163-17479283 ( 25) CGATCGTT 1 chr3R:20714496-20714616 ( 30) CGCTCGTT 1 chr2R:5804704-5804824 ( 63) CGCTCGTT 1 chr3R:30278137-30278257 ( 92) CGATCGTG 1 chr2L:19820247-19820367 ( 50) CGTTCGCG 1 chr3R:30277936-30278056 ( 57) CGCTCGTG 1 chr3R:29377604-29377724 ( 101) CGTTCGCG 1 chrX:3836087-3836207 ( 24) CGTTCGCT 1 chr3L:18139396-18139516 ( 82) CGCGTGTG 1 chrX:20924917-20925037 ( 68) CGTGTGCG 1 chr2R:24334176-24334296 ( 8) CGTGTGCT 1 chr2L:18782578-18782698 ( 75) CGAGTGTG 1 chr2R:16386514-16386634 ( 43) CGTGTGCG 1 chr3L:16976312-16976432 ( 81) CGCGTGTT 1 chr3R:12477370-12477490 ( 57) CGCTTGTT 1 chr3R:20818794-20818914 ( 42) CGATTGTT 1 chr3L:18304319-18304439 ( 49) CGCTTGTT 1 chrX:15633342-15633462 ( 76) CGTTCGTT 1 chr3R:23557415-23557535 ( 94) CGTTCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGMKCGCK MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6312 E= 1.9e-006 -1283 204 -1283 -1283 -1283 -1283 203 -1283 70 76 -1283 -60 -1283 -1283 116 86 -1283 146 -1283 40 -1283 -1283 203 -1283 -1283 155 -1283 20 -1283 -1283 97 106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGMKCGCK MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 1.9e-006 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.424658 0.410959 0.000000 0.164384 0.000000 0.000000 0.547945 0.452055 0.000000 0.671233 0.000000 0.328767 0.000000 0.000000 1.000000 0.000000 0.000000 0.712329 0.000000 0.287671 0.000000 0.000000 0.479452 0.520548 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGMKCGCK MEME-2 regular expression -------------------------------------------------------------------------------- CG[AC][GT][CT]G[CT][TG] -------------------------------------------------------------------------------- Time 13.84 secs. ******************************************************************************** ******************************************************************************** MOTIF CGMHGKCG MEME-3 width = 8 sites = 73 llr = 538 E-value = 2.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGMHGKCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::54:2:: pos.-specific C a:532:a: probability G :a::53:a matrix T :::225:: bits 2.0 ** ** 1.8 ** ** 1.6 ** ** 1.4 ** ** Relative 1.2 ** ** Entropy 1.0 *** ** (10.6 bits) 0.8 *** ** 0.6 *** * ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGAAGTCG consensus CCTG sequence TC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGMHGKCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2036387-2036507 111 2.87e-05 TGAATAccgt cgcagtcg tc chr3R:26318331-26318451 2 2.87e-05 A CGAAGTCG GTTTTGTTGA chr2R:18232762-18232882 44 2.87e-05 TACGCAGGCG CGCAGTCG CACATCCGTC chr2L:18732453-18732573 82 2.87e-05 TAGACCCAGT CGCAGTCG CAGCTTCAGT chr3R:26170811-26170931 3 2.87e-05 AT CGCAGTCG ACGCCGCTGT chr2L:11581975-11582095 34 2.87e-05 ACAGACACGC CGCAGTcg atccgttcga chr3L:16572260-16572380 103 5.54e-05 TGACCGCTCA CGACGTCG CGACCGTTGA chr2L:17752432-17752552 67 5.54e-05 CTGGAGACAC CGCCGTCG TTGTCGTCCT chr2L:18782578-18782698 31 5.54e-05 GCAGCGACGT CGACGTCG ACGGCGACCG chr3R:28891894-28892014 51 5.54e-05 CTTCGCTCGT CGCCGTCG CCGCCGTGCA chrX:16695045-16695165 106 5.54e-05 GCTTCTTCAC CGCCGTCG CGTCGAG chr3R:21740111-21740231 67 5.54e-05 ATGATTACGC CGCCGTCG GGAGTGGTAG chr2R:17087495-17087615 86 8.35e-05 ACACCCGCGA CGAAGGCG GCAGCGATTT chr3L:4532051-4532171 29 8.35e-05 CGCTCTCGTT CGAAGGCG GGGGGTGGTT chr2R:20698489-20698609 11 8.35e-05 TCCTGTGACT CGAAGGCG AAGCACGCGT chr3R:10972390-10972510 85 1.11e-04 ttgtcgttgt cgctgtcg tACGGGCGgc chrX:3099520-3099640 40 1.11e-04 GTACGTGTTC CGATGTCG AGTAATTCGG chr3L:10186016-10186136 72 1.11e-04 CGTTCACCGT CGATGTCG CGCTGAAACT chr2R:23683384-23683504 3 1.11e-04 TA CGCTGTCG CTATGAATCG chr3L:20620475-20620595 29 1.37e-04 gacgcaacga cgacggcg acgtgcgatc chr2R:8676276-8676396 38 1.37e-04 TTTCGGCTTG CGACGGCG CTACAACGAG chr3L:5902357-5902477 2 1.37e-04 G CGACGGCG GGAGGAGGAG chr2L:14300986-14301106 54 1.37e-04 TCACGGAAAT CGACGGCG ATCGCGATCG chr2L:714864-714984 25 1.37e-04 ATCCAAATTC CGACGGCG ACACGAGGAG chr3R:27988264-27988384 27 1.66e-04 caatcGGTCA CGCATTCG GTTGAATCCG chr2R:17108864-17108984 72 1.66e-04 CGATATGCGT CGAATTCG GCGGTGGTTT chr3L:21099977-21100097 54 1.66e-04 TACTCACTCt cgaattcg aatgcgagtg chr3R:24549026-24549146 93 1.66e-04 AGGTCTATTA CGAATTCG TTCCGTTCTC chr3L:17238075-17238195 75 2.22e-04 GTTAGTGCAA CGCTGGCG TTCCGCTTTT chr3R:18849188-18849308 81 2.22e-04 GAACGCCATC CGCTGGCG GATTCATCGC chr2R:18878405-18878525 19 2.22e-04 ACGAAGAAGT CGAACTCG ACGCTGCGTC chr2R:6195911-6196031 40 2.22e-04 GATGCGATGG CGATGGCG ATGGCGGAGC chr3L:1969931-1970051 106 2.22e-04 CTTCTCTCGG CGAACTCG AACTTTT chr3R:29377604-29377724 78 2.22e-04 AGGATGTGTC CGCTGGCG CTGCCGGACT chrX:2973725-2973845 109 2.22e-04 GAACGAAGTG CGAACTCG ATCC chr3L:2879005-2879125 51 2.22e-04 CACACGCACT CGCACTCG TTTCTAGCGC chr2R:22372975-22373095 103 2.22e-04 TTATTTGCTC CGCACTCG CGAGCTTCTT chr2R:15482696-15482816 95 2.22e-04 CGCCGCTGCT CGAACTCG CGAACCTGCT chr3L:21048055-21048175 15 2.79e-04 GTTAGTTTTT CGCAGACG CTTTTCCGCC chr3L:1628271-1628391 50 2.79e-04 AGAGAAAACA CGCAGACG ACCGAAACTT chr3L:13919842-13919962 106 2.79e-04 CAACAACAGT CGAAGACG AACTCTG chr2L:3422843-3422963 69 2.79e-04 TCGGATATCC CGAAGACG AGACACGCGG chr3L:7605040-7605160 80 2.79e-04 AAAAGCGACT CGAAGACG AATGTATAGA chrX:14923351-14923471 107 3.05e-04 CAAAAAAAAA CGACCTCG CGCTTA chr2R:21214859-21214979 109 3.62e-04 CGAACGACTG CGAATGCG TTCA chr3L:17415649-17415769 82 3.62e-04 CTACTATAAG CGACGACG ACGACAGGTT chr2L:18503855-18503975 97 3.62e-04 GAACCGAACA CGCCGACG ATTTCTCACA chr2R:24334176-24334296 104 3.62e-04 GCGCGTCCGT CGCCGACG AGTGGTAAA chr2R:12229200-12229320 64 3.62e-04 ATGATCTACG CGCATGCG CAACCGCGTT chrX:1338150-1338270 25 3.62e-04 CGGTCTCAAT CGCATGCG CGGCCTGCAG chr3R:21782411-21782531 20 3.62e-04 CTAAAACGAG CGACGACG TGCCTTCAAT chr2L:20399275-20399395 105 3.62e-04 TGCGTATGAG CGACGACG ACAAACTG chrX:15633342-15633462 49 4.18e-04 GATTGGTCAT CGATTTCG GTGCGCGTTT chr3L:10481428-10481548 33 4.18e-04 TTTTGCTCAT CGCTTTCG CCTCGCGCAT chr3R:30277936-30278056 9 4.18e-04 TTGAATTT CGCTTTCG ATCTGGTTGG chr3L:14536157-14536277 92 4.18e-04 CGCGCGTGTG CGAACGCG CTACGAACCA chr2R:7187255-7187375 88 4.18e-04 TCGGCTATGT CGATTTCG GTCCACGTTA chr2L:8463880-8464000 43 4.18e-04 AACAATCATC CGCTTTCG CCGAAAGAGT chrX:7065954-7066074 87 4.18e-04 GTCGCACGTG CGCTTTCG CCAAGCGTCA chr2L:20017173-20017293 96 4.18e-04 GGTCGGCAGC CGAACGCG TTGAAACTCG chr3L:19235230-19235350 9 4.72e-04 GCCAACGT CGACTGCG CTGCCTTTCG chr3R:12595577-12595697 37 4.72e-04 TCTCAGCATG CGACTGCG GCTGCCTTAC chrX:3836087-3836207 5 4.72e-04 TTTG CGCTCTCG GCTTCGTAAG chr2R:11106697-11106817 38 4.72e-04 ATTGCGACTG CGACTGCG ATTTCCCGAA chr2L:6411214-6411334 37 4.72e-04 attgcgactg cgactgcg aatactgatg chrX:2410792-2410912 90 4.72e-04 TGCTCTCGAC CGCTCTCG CTGACAAACT chrX:9067872-9067992 10 4.72e-04 aCCGTTGCA CGCCTGCG CTTTTCAAAA chr3R:11172553-11172673 94 5.26e-04 CGCAGCGATT CGCTGACG AACGACAACT chr2R:14713505-14713625 88 5.26e-04 TCTACACAAC CGCCCGCG TTGAGAGTTC chr3L:2163737-2163857 96 5.26e-04 CCGCCCCGTC CGCCCGCG TGGAATTCTC chr2L:13290927-13291047 94 6.41e-04 GCGCAATTAA CGCACACG TCATCGggcg chr2L:14334183-14334303 95 6.41e-04 GTTTCCGCAC CGAACACG CGATCATCGA chr2L:3108037-3108157 5 7.55e-04 CTCT CGATCACG AAACGCGATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGMHGKCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2036387-2036507 2.9e-05 110_[+3]_2 chr3R:26318331-26318451 2.9e-05 1_[+3]_111 chr2R:18232762-18232882 2.9e-05 43_[+3]_69 chr2L:18732453-18732573 2.9e-05 81_[+3]_31 chr3R:26170811-26170931 2.9e-05 2_[+3]_110 chr2L:11581975-11582095 2.9e-05 33_[+3]_79 chr3L:16572260-16572380 5.5e-05 102_[+3]_10 chr2L:17752432-17752552 5.5e-05 66_[+3]_46 chr2L:18782578-18782698 5.5e-05 30_[+3]_82 chr3R:28891894-28892014 5.5e-05 50_[+3]_62 chrX:16695045-16695165 5.5e-05 105_[+3]_7 chr3R:21740111-21740231 5.5e-05 66_[+3]_46 chr2R:17087495-17087615 8.4e-05 85_[+3]_27 chr3L:4532051-4532171 8.4e-05 28_[+3]_84 chr2R:20698489-20698609 8.4e-05 10_[+3]_102 chr3R:10972390-10972510 0.00011 84_[+3]_28 chrX:3099520-3099640 0.00011 39_[+3]_73 chr3L:10186016-10186136 0.00011 71_[+3]_41 chr2R:23683384-23683504 0.00011 2_[+3]_110 chr3L:20620475-20620595 0.00014 28_[+3]_84 chr2R:8676276-8676396 0.00014 37_[+3]_75 chr3L:5902357-5902477 0.00014 1_[+3]_111 chr2L:14300986-14301106 0.00014 53_[+3]_59 chr2L:714864-714984 0.00014 24_[+3]_88 chr3R:27988264-27988384 0.00017 26_[+3]_86 chr2R:17108864-17108984 0.00017 71_[+3]_41 chr3L:21099977-21100097 0.00017 53_[+3]_59 chr3R:24549026-24549146 0.00017 92_[+3]_20 chr3L:17238075-17238195 0.00022 74_[+3]_38 chr3R:18849188-18849308 0.00022 80_[+3]_32 chr2R:18878405-18878525 0.00022 18_[+3]_94 chr2R:6195911-6196031 0.00022 39_[+3]_73 chr3L:1969931-1970051 0.00022 105_[+3]_7 chr3R:29377604-29377724 0.00022 77_[+3]_35 chrX:2973725-2973845 0.00022 108_[+3]_4 chr3L:2879005-2879125 0.00022 50_[+3]_62 chr2R:22372975-22373095 0.00022 102_[+3]_10 chr2R:15482696-15482816 0.00022 94_[+3]_18 chr3L:21048055-21048175 0.00028 14_[+3]_98 chr3L:1628271-1628391 0.00028 49_[+3]_63 chr3L:13919842-13919962 0.00028 105_[+3]_7 chr2L:3422843-3422963 0.00028 68_[+3]_44 chr3L:7605040-7605160 0.00028 79_[+3]_33 chrX:14923351-14923471 0.00031 106_[+3]_6 chr2R:21214859-21214979 0.00036 108_[+3]_4 chr3L:17415649-17415769 0.00036 81_[+3]_31 chr2L:18503855-18503975 0.00036 96_[+3]_16 chr2R:24334176-24334296 0.00036 103_[+3]_9 chr2R:12229200-12229320 0.00036 63_[+3]_49 chrX:1338150-1338270 0.00036 24_[+3]_88 chr3R:21782411-21782531 0.00036 19_[+3]_93 chr2L:20399275-20399395 0.00036 104_[+3]_8 chrX:15633342-15633462 0.00042 48_[+3]_64 chr3L:10481428-10481548 0.00042 32_[+3]_80 chr3R:30277936-30278056 0.00042 8_[+3]_104 chr3L:14536157-14536277 0.00042 91_[+3]_21 chr2R:7187255-7187375 0.00042 87_[+3]_25 chr2L:8463880-8464000 0.00042 42_[+3]_70 chrX:7065954-7066074 0.00042 86_[+3]_26 chr2L:20017173-20017293 0.00042 95_[+3]_17 chr3L:19235230-19235350 0.00047 8_[+3]_104 chr3R:12595577-12595697 0.00047 36_[+3]_76 chrX:3836087-3836207 0.00047 4_[+3]_108 chr2R:11106697-11106817 0.00047 37_[+3]_75 chr2L:6411214-6411334 0.00047 36_[+3]_76 chrX:2410792-2410912 0.00047 89_[+3]_23 chrX:9067872-9067992 0.00047 9_[+3]_103 chr3R:11172553-11172673 0.00053 93_[+3]_19 chr2R:14713505-14713625 0.00053 87_[+3]_25 chr3L:2163737-2163857 0.00053 95_[+3]_17 chr2L:13290927-13291047 0.00064 93_[+3]_19 chr2L:14334183-14334303 0.00064 94_[+3]_18 chr2L:3108037-3108157 0.00075 4_[+3]_108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGMHGKCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGMHGKCG width=8 seqs=73 chrX:2036387-2036507 ( 111) CGCAGTCG 1 chr3R:26318331-26318451 ( 2) CGAAGTCG 1 chr2R:18232762-18232882 ( 44) CGCAGTCG 1 chr2L:18732453-18732573 ( 82) CGCAGTCG 1 chr3R:26170811-26170931 ( 3) CGCAGTCG 1 chr2L:11581975-11582095 ( 34) CGCAGTCG 1 chr3L:16572260-16572380 ( 103) CGACGTCG 1 chr2L:17752432-17752552 ( 67) CGCCGTCG 1 chr2L:18782578-18782698 ( 31) CGACGTCG 1 chr3R:28891894-28892014 ( 51) CGCCGTCG 1 chrX:16695045-16695165 ( 106) CGCCGTCG 1 chr3R:21740111-21740231 ( 67) CGCCGTCG 1 chr2R:17087495-17087615 ( 86) CGAAGGCG 1 chr3L:4532051-4532171 ( 29) CGAAGGCG 1 chr2R:20698489-20698609 ( 11) CGAAGGCG 1 chr3R:10972390-10972510 ( 85) CGCTGTCG 1 chrX:3099520-3099640 ( 40) CGATGTCG 1 chr3L:10186016-10186136 ( 72) CGATGTCG 1 chr2R:23683384-23683504 ( 3) CGCTGTCG 1 chr3L:20620475-20620595 ( 29) CGACGGCG 1 chr2R:8676276-8676396 ( 38) CGACGGCG 1 chr3L:5902357-5902477 ( 2) CGACGGCG 1 chr2L:14300986-14301106 ( 54) CGACGGCG 1 chr2L:714864-714984 ( 25) CGACGGCG 1 chr3R:27988264-27988384 ( 27) CGCATTCG 1 chr2R:17108864-17108984 ( 72) CGAATTCG 1 chr3L:21099977-21100097 ( 54) CGAATTCG 1 chr3R:24549026-24549146 ( 93) CGAATTCG 1 chr3L:17238075-17238195 ( 75) CGCTGGCG 1 chr3R:18849188-18849308 ( 81) CGCTGGCG 1 chr2R:18878405-18878525 ( 19) CGAACTCG 1 chr2R:6195911-6196031 ( 40) CGATGGCG 1 chr3L:1969931-1970051 ( 106) CGAACTCG 1 chr3R:29377604-29377724 ( 78) CGCTGGCG 1 chrX:2973725-2973845 ( 109) CGAACTCG 1 chr3L:2879005-2879125 ( 51) CGCACTCG 1 chr2R:22372975-22373095 ( 103) CGCACTCG 1 chr2R:15482696-15482816 ( 95) CGAACTCG 1 chr3L:21048055-21048175 ( 15) CGCAGACG 1 chr3L:1628271-1628391 ( 50) CGCAGACG 1 chr3L:13919842-13919962 ( 106) CGAAGACG 1 chr2L:3422843-3422963 ( 69) CGAAGACG 1 chr3L:7605040-7605160 ( 80) CGAAGACG 1 chrX:14923351-14923471 ( 107) CGACCTCG 1 chr2R:21214859-21214979 ( 109) CGAATGCG 1 chr3L:17415649-17415769 ( 82) CGACGACG 1 chr2L:18503855-18503975 ( 97) CGCCGACG 1 chr2R:24334176-24334296 ( 104) CGCCGACG 1 chr2R:12229200-12229320 ( 64) CGCATGCG 1 chrX:1338150-1338270 ( 25) CGCATGCG 1 chr3R:21782411-21782531 ( 20) CGACGACG 1 chr2L:20399275-20399395 ( 105) CGACGACG 1 chrX:15633342-15633462 ( 49) CGATTTCG 1 chr3L:10481428-10481548 ( 33) CGCTTTCG 1 chr3R:30277936-30278056 ( 9) CGCTTTCG 1 chr3L:14536157-14536277 ( 92) CGAACGCG 1 chr2R:7187255-7187375 ( 88) CGATTTCG 1 chr2L:8463880-8464000 ( 43) CGCTTTCG 1 chrX:7065954-7066074 ( 87) CGCTTTCG 1 chr2L:20017173-20017293 ( 96) CGAACGCG 1 chr3L:19235230-19235350 ( 9) CGACTGCG 1 chr3R:12595577-12595697 ( 37) CGACTGCG 1 chrX:3836087-3836207 ( 5) CGCTCTCG 1 chr2R:11106697-11106817 ( 38) CGACTGCG 1 chr2L:6411214-6411334 ( 37) CGACTGCG 1 chrX:2410792-2410912 ( 90) CGCTCTCG 1 chrX:9067872-9067992 ( 10) CGCCTGCG 1 chr3R:11172553-11172673 ( 94) CGCTGACG 1 chr2R:14713505-14713625 ( 88) CGCCCGCG 1 chr3L:2163737-2163857 ( 96) CGCCCGCG 1 chr2L:13290927-13291047 ( 94) CGCACACG 1 chr2L:14334183-14334303 ( 95) CGAACACG 1 chr2L:3108037-3108157 ( 5) CGATCACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGMHGKCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6312 E= 2.2e+000 -1283 204 -1283 -1283 -1283 -1283 203 -1283 103 94 -1283 -1283 70 43 -1283 -2 -1283 -15 113 -2 -45 -1283 43 94 -1283 204 -1283 -1283 -1283 -1283 203 -1283 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGMHGKCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 2.2e+000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.534247 0.465753 0.000000 0.000000 0.424658 0.328767 0.000000 0.246575 0.000000 0.219178 0.534247 0.246575 0.191781 0.000000 0.328767 0.479452 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGMHGKCG MEME-3 regular expression -------------------------------------------------------------------------------- CG[AC][ACT][GTC][TG]CG -------------------------------------------------------------------------------- Time 19.82 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTG MEME-4 width = 8 sites = 23 llr = 208 E-value = 5.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 2:3:::3: probability G :a:a:8:a matrix T 8:7:a27: bits 2.0 * ** * 1.8 * ** * 1.6 * ** * 1.4 ** *** * Relative 1.2 ******** Entropy 1.0 ******** (13.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:11582189-11582309 25 1.41e-05 tctgtgcgtg tgtgtgtg tgtctgtgtA chr2L:10457690-10457810 55 1.41e-05 TCTGtgtgcc tgtgtgtg tatatacata chr3L:1628271-1628391 6 1.41e-05 ctgtg tgtgtgtg tgCGGGAAGA chr2L:8898798-8898918 88 1.41e-05 TGTATATAGC TGTGTGTG CCAGCAGACA chr2R:16398937-16399057 94 1.41e-05 cgAAGGAACA TGTGTGTG TGACGGGAAG chr2R:19067182-19067302 97 1.41e-05 CCtgtgtgtg tgtgtgtg tAGGCCCAAT chrX:2410792-2410912 7 1.41e-05 GCATGT TGTGTGTG GTTCTGTTTC chr2L:1555142-1555262 69 1.41e-05 CGAGAGTGCG TGTGTGTG ATCTTATGTG chr3L:2896760-2896880 25 4.14e-05 TTGGAAAAAC TGTGTGCG TGAGCAGCGG chr2R:17265718-17265838 102 4.14e-05 TAAGAGTGTT TGCGTGTG TTCGTTTCTG chr3R:15077052-15077172 53 4.14e-05 AGCCCACTTG TGCGTGTG TGAGTGGCGT chr3R:30278137-30278257 72 6.95e-05 CATGGCGCCG CGTGTGTG AATGAGAGCG chr3R:29377604-29377724 112 6.95e-05 GTTCGCGTCG CGTGTGTG C chrX:6908280-6908400 46 6.95e-05 GAGCGCTCAC CGTGTGTG TCTCGTGTCT chr3L:16916260-16916380 77 6.95e-05 CTATAGACAG TGTGTTTG TTTTGTTTGG chr3L:16976312-16976432 91 6.95e-05 CGCGTGTTTT TGTGTTTG ATTGTTTTTT chr2R:15252871-15252991 94 8.28e-05 GTGCCCAAAG TGCGTGCG TCATACTTCG chr3R:30277936-30278056 48 8.28e-05 GGCTTCTCTC TGCGTGCG CCGCTCGTGG chrX:14923351-14923471 46 8.28e-05 GCTTTGCGCA TGCGTGCG CACTGCCCAA chrX:17301808-17301928 71 8.28e-05 CGGTTTGCTG TGCGTGCG AAGCGCTTTT chr2R:14435895-14436015 41 1.37e-04 GGATATTCGC TGCGTTTG CCAGGACTCG chr3R:26017360-26017480 74 1.37e-04 GCGAGCGTTG CGTGTGCG CACCTCGCAA chr2R:12229200-12229320 81 1.37e-04 GCAACCGCGT TGTGTTCG CTTCTTCGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:11582189-11582309 1.4e-05 24_[+4]_88 chr2L:10457690-10457810 1.4e-05 54_[+4]_58 chr3L:1628271-1628391 1.4e-05 5_[+4]_107 chr2L:8898798-8898918 1.4e-05 87_[+4]_25 chr2R:16398937-16399057 1.4e-05 93_[+4]_19 chr2R:19067182-19067302 1.4e-05 96_[+4]_16 chrX:2410792-2410912 1.4e-05 6_[+4]_106 chr2L:1555142-1555262 1.4e-05 68_[+4]_44 chr3L:2896760-2896880 4.1e-05 24_[+4]_88 chr2R:17265718-17265838 4.1e-05 101_[+4]_11 chr3R:15077052-15077172 4.1e-05 52_[+4]_60 chr3R:30278137-30278257 6.9e-05 71_[+4]_41 chr3R:29377604-29377724 6.9e-05 111_[+4]_1 chrX:6908280-6908400 6.9e-05 45_[+4]_67 chr3L:16916260-16916380 6.9e-05 76_[+4]_36 chr3L:16976312-16976432 6.9e-05 90_[+4]_22 chr2R:15252871-15252991 8.3e-05 93_[+4]_19 chr3R:30277936-30278056 8.3e-05 47_[+4]_65 chrX:14923351-14923471 8.3e-05 45_[+4]_67 chrX:17301808-17301928 8.3e-05 70_[+4]_42 chr2R:14435895-14436015 0.00014 40_[+4]_72 chr3R:26017360-26017480 0.00014 73_[+4]_39 chr2R:12229200-12229320 0.00014 80_[+4]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTG width=8 seqs=23 chr2L:11582189-11582309 ( 25) TGTGTGTG 1 chr2L:10457690-10457810 ( 55) TGTGTGTG 1 chr3L:1628271-1628391 ( 6) TGTGTGTG 1 chr2L:8898798-8898918 ( 88) TGTGTGTG 1 chr2R:16398937-16399057 ( 94) TGTGTGTG 1 chr2R:19067182-19067302 ( 97) TGTGTGTG 1 chrX:2410792-2410912 ( 7) TGTGTGTG 1 chr2L:1555142-1555262 ( 69) TGTGTGTG 1 chr3L:2896760-2896880 ( 25) TGTGTGCG 1 chr2R:17265718-17265838 ( 102) TGCGTGTG 1 chr3R:15077052-15077172 ( 53) TGCGTGTG 1 chr3R:30278137-30278257 ( 72) CGTGTGTG 1 chr3R:29377604-29377724 ( 112) CGTGTGTG 1 chrX:6908280-6908400 ( 46) CGTGTGTG 1 chr3L:16916260-16916380 ( 77) TGTGTTTG 1 chr3L:16976312-16976432 ( 91) TGTGTTTG 1 chr2R:15252871-15252991 ( 94) TGCGTGCG 1 chr3R:30277936-30278056 ( 48) TGCGTGCG 1 chrX:14923351-14923471 ( 46) TGCGTGCG 1 chrX:17301808-17301928 ( 71) TGCGTGCG 1 chr2R:14435895-14436015 ( 41) TGCGTTTG 1 chr3R:26017360-26017480 ( 74) CGTGTGCG 1 chr2R:12229200-12229320 ( 81) TGTGTTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1534 E= 5.9e+004 -1117 -48 -1117 173 -1117 -1117 203 -1117 -1117 32 -1117 148 -1117 -1117 203 -1117 -1117 -1117 -1117 200 -1117 -1117 175 -52 -1117 32 -1117 148 -1117 -1117 203 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 5.9e+004 0.000000 0.173913 0.000000 0.826087 0.000000 0.000000 1.000000 0.000000 0.000000 0.304348 0.000000 0.695652 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.826087 0.173913 0.000000 0.304348 0.000000 0.695652 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 regular expression -------------------------------------------------------------------------------- TG[TC]GTG[TC]G -------------------------------------------------------------------------------- Time 25.65 secs. ******************************************************************************** ******************************************************************************** MOTIF MAAMAACA MEME-5 width = 8 sites = 17 llr = 162 E-value = 2.0e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAAMAACA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 5aa4aa:a pos.-specific C 5::6::a: probability G :::::::: matrix T :::::::: bits 2.0 * 1.8 ** **** 1.6 ** **** 1.4 ** **** Relative 1.2 ** **** Entropy 1.0 ******** (13.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACAACA consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAMAACA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5340195-5340315 53 1.91e-05 AGTATCGCAC AAACAACA CTAACGGAAA chr3L:9974619-9974739 59 1.91e-05 GGCTGAGCAA AAACAACA TGTATGCGGA chr2L:10198972-10199092 34 1.91e-05 ATTTTTGTAT AAACAACA CACAACGCAG chr2R:17265718-17265838 53 1.91e-05 ACAACTAAAA AAACAACA ACGCGAGTGC chr3R:27437383-27437503 110 1.91e-05 GATAAGAACT AAACAACA TTC chr3R:20978184-20978304 72 3.68e-05 GCGGTAAATa caacaaca acgacaacga chr3R:22042414-22042534 6 3.68e-05 AGTAG CAACAACA AATACATAAT chr3L:13919842-13919962 96 3.68e-05 CAACCGCCGC CAACAACA GTCGAAGACG chr2R:5804704-5804824 84 3.68e-05 CCATTAGCAA CAACAACA CATCGAGCAT chrX:7226447-7226567 35 3.68e-05 TCCGAGGGGT CAACAACA CACTGCTCAC chrX:3099520-3099640 94 3.68e-05 gccacaaata caacaaca aaagcagcaa chr2L:2855193-2855313 11 5.74e-05 GTTTCAGTCG AAAAAACA CAACTAACAA chr3L:17415649-17415769 6 5.74e-05 CAGAC AAAAAACA ACGAAAAACA chr3L:7156964-7157084 68 5.74e-05 ATGGTAACCG AAAAAACA GCGCGCGCTG chrX:3836087-3836207 55 5.74e-05 AGCTTCAAAA AAAAAACA TATTTTTTTT chr3R:14369874-14369994 34 7.65e-05 AAAAAGCGCA CAAAAACA CGGCCAGAAC chr3L:2255861-2255981 48 7.65e-05 AGACACAGCA CAAAAACA CTGGTAAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAMAACA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5340195-5340315 1.9e-05 52_[+5]_60 chr3L:9974619-9974739 1.9e-05 58_[+5]_54 chr2L:10198972-10199092 1.9e-05 33_[+5]_79 chr2R:17265718-17265838 1.9e-05 52_[+5]_60 chr3R:27437383-27437503 1.9e-05 109_[+5]_3 chr3R:20978184-20978304 3.7e-05 71_[+5]_41 chr3R:22042414-22042534 3.7e-05 5_[+5]_107 chr3L:13919842-13919962 3.7e-05 95_[+5]_17 chr2R:5804704-5804824 3.7e-05 83_[+5]_29 chrX:7226447-7226567 3.7e-05 34_[+5]_78 chrX:3099520-3099640 3.7e-05 93_[+5]_19 chr2L:2855193-2855313 5.7e-05 10_[+5]_102 chr3L:17415649-17415769 5.7e-05 5_[+5]_107 chr3L:7156964-7157084 5.7e-05 67_[+5]_45 chrX:3836087-3836207 5.7e-05 54_[+5]_58 chr3R:14369874-14369994 7.7e-05 33_[+5]_79 chr3L:2255861-2255981 7.7e-05 47_[+5]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAMAACA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAAMAACA width=8 seqs=17 chrX:5340195-5340315 ( 53) AAACAACA 1 chr3L:9974619-9974739 ( 59) AAACAACA 1 chr2L:10198972-10199092 ( 34) AAACAACA 1 chr2R:17265718-17265838 ( 53) AAACAACA 1 chr3R:27437383-27437503 ( 110) AAACAACA 1 chr3R:20978184-20978304 ( 72) CAACAACA 1 chr3R:22042414-22042534 ( 6) CAACAACA 1 chr3L:13919842-13919962 ( 96) CAACAACA 1 chr2R:5804704-5804824 ( 84) CAACAACA 1 chrX:7226447-7226567 ( 35) CAACAACA 1 chrX:3099520-3099640 ( 94) CAACAACA 1 chr2L:2855193-2855313 ( 11) AAAAAACA 1 chr3L:17415649-17415769 ( 6) AAAAAACA 1 chr3L:7156964-7157084 ( 68) AAAAAACA 1 chrX:3836087-3836207 ( 55) AAAAAACA 1 chr3R:14369874-14369994 ( 34) CAAAAACA 1 chr3L:2255861-2255981 ( 48) CAAAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAMAACA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 2.0e+005 101 95 -1073 -1073 193 -1073 -1073 -1073 193 -1073 -1073 -1073 43 141 -1073 -1073 193 -1073 -1073 -1073 193 -1073 -1073 -1073 -1073 204 -1073 -1073 193 -1073 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAMAACA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.0e+005 0.529412 0.470588 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.352941 0.647059 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAMAACA MEME-5 regular expression -------------------------------------------------------------------------------- [AC]AA[CA]AACA -------------------------------------------------------------------------------- Time 31.43 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:714864-714984 6.11e-04 120 chrX:1134786-1134906 4.22e-01 120 chr3L:2163737-2163857 5.86e-02 120 chr3R:21719536-21719656 4.38e-01 120 chr2L:20017173-20017293 1.92e-02 120 chr3L:7094823-7094943 6.76e-01 120 chrX:18634786-18634906 6.63e-01 120 chrX:9067872-9067992 6.20e-02 120 chrX:7065954-7066074 3.19e-03 120 chr2L:1555142-1555262 1.74e-02 68_[+4(1.41e-05)]_15_[+4(6.95e-05)]_\ 21 chr2R:15482696-15482816 5.67e-01 120 chr2L:16794158-16794278 2.08e-01 120 chr2R:22478416-22478536 3.98e-03 4_[+5(5.74e-05)]_108 chr3L:4073841-4073961 2.65e-02 120 chr3L:7605040-7605160 7.21e-03 102_[+1(5.55e-05)]_10 chr2R:22372975-22373095 1.75e-01 120 chr2L:10544874-10544994 2.04e-01 120 chrX:6600063-6600183 3.87e-02 20_[+2(5.27e-05)]_92 chr3L:16976312-16976432 9.33e-02 90_[+4(6.95e-05)]_22 chr2L:4614190-4614310 9.71e-02 112_[+1(5.55e-05)] chr3R:14799013-14799133 8.58e-01 120 chr2R:15011410-15011530 9.14e-01 120 chr2L:20399275-20399395 2.98e-02 120 chrX:2410792-2410912 4.77e-05 6_[+4(1.41e-05)]_88_[+1(5.55e-05)]_\ 10 chrX:836409-836529 1.38e-01 120 chr2L:4594891-4595011 1.71e-01 120 chr2L:14263020-14263140 3.67e-02 120 chrX:17301808-17301928 3.68e-04 70_[+4(8.28e-05)]_27_[+1(5.55e-05)]_\ 7 chr2L:8463880-8464000 7.20e-02 120 chr2L:11581975-11582095 4.68e-02 33_[+3(2.87e-05)]_79 chr3R:21740111-21740231 1.81e-01 66_[+3(5.54e-05)]_46 chr3L:16916260-16916380 3.53e-02 76_[+4(6.95e-05)]_36 chr3L:17764033-17764153 3.41e-01 120 chr2L:7855163-7855283 2.27e-03 120 chr2L:3422843-3422963 4.79e-01 120 chr3L:6998829-6998949 1.51e-01 120 chr2R:23683384-23683504 7.08e-02 120 chr3R:27437383-27437503 8.43e-03 109_[+5(1.91e-05)]_3 chr2R:19067182-19067302 1.19e-01 88_[+4(1.41e-05)]_[+4(1.41e-05)]_16 chr3R:15077052-15077172 2.44e-02 52_[+4(4.14e-05)]_60 chr2L:6411214-6411334 7.89e-04 79_[+1(9.12e-05)]_33 chr3L:2879005-2879125 8.97e-02 120 chr2L:3656833-3656953 2.27e-02 120 chr3L:13666646-13666766 3.03e-01 120 chr3R:16502768-16502888 4.39e-01 120 chrX:2973725-2973845 1.29e-01 120 chr2R:21612951-21613071 2.72e-01 120 chr3L:21706247-21706367 8.99e-02 120 chr2L:3730501-3730621 5.12e-01 120 chr2L:20859152-20859272 1.53e-01 120 chr2L:14300986-14301106 2.13e-03 28_[+2(5.27e-05)]_84 chrX:16695045-16695165 4.54e-04 78_[+2(5.27e-05)]_19_[+3(5.54e-05)]_\ 7 chr2R:11106697-11106817 7.78e-02 120 chr2L:21618643-21618763 8.57e-01 120 chr3R:20204802-20204922 1.33e-03 120 chr2R:16386514-16386634 3.16e-04 92_[+1(1.79e-05)]_20 chr3R:28891894-28892014 5.47e-03 50_[+3(5.54e-05)]_62 chr3L:18304319-18304439 6.02e-01 120 chr3L:2255861-2255981 4.20e-02 47_[+5(7.65e-05)]_57_[+1(9.12e-05)] chr3L:11136033-11136153 1.11e-02 120 chr2R:9658111-9658231 1.00e+00 120 chr2L:20223049-20223169 3.71e-01 120 chr3R:22899274-22899394 1.11e-02 49_[+2(5.27e-05)]_63 chr2L:13977230-13977350 6.01e-02 120 chr2R:11790336-11790456 3.18e-01 120 chr2R:7187255-7187375 6.17e-02 67_[+2(5.27e-05)]_45 chr2L:14334183-14334303 1.07e-03 120 chrX:18773914-18774034 7.22e-01 120 chr3L:14536157-14536277 3.78e-04 120 chr2R:10313889-10314009 6.40e-03 77_[+1(7.46e-05)]_35 chr3R:17425760-17425880 1.59e-02 120 chr3L:14805110-14805230 5.93e-01 120 chr3R:6593213-6593333 3.55e-01 120 chrX:16783313-16783433 6.61e-03 71_[+2(5.27e-05)]_41 chrX:6908280-6908400 7.39e-04 34_[+2(5.27e-05)]_3_[+4(6.95e-05)]_\ 67 chr3L:18890357-18890477 1.28e-01 120 chrX:3836087-3836207 6.58e-04 54_[+5(5.74e-05)]_58 chr3R:29377604-29377724 8.54e-05 111_[+4(6.95e-05)]_1 chr2R:17265718-17265838 1.70e-04 52_[+5(1.91e-05)]_41_[+4(4.14e-05)]_\ 11 chrX:22657261-22657381 9.04e-01 120 chr2R:20698489-20698609 6.70e-02 10_[+3(8.35e-05)]_102 chr2L:20382188-20382308 1.45e-03 120 chr3R:14369874-14369994 8.64e-02 33_[+5(7.65e-05)]_79 chr2R:24642119-24642239 3.79e-01 120 chr2R:14713505-14713625 4.59e-02 120 chr2R:17076031-17076151 6.78e-01 120 chr3L:7156964-7157084 4.70e-03 67_[+5(5.74e-05)]_1_[+2(5.27e-05)]_\ 36 chr2R:10420979-10421099 5.10e-01 120 chr3R:21782411-21782531 6.55e-02 120 chr3L:21640-21760 7.99e-01 120 chr2R:22039447-22039567 3.49e-01 120 chr3R:11542831-11542951 6.14e-02 120 chrX:1338150-1338270 1.14e-01 120 chrX:15162922-15163042 8.60e-03 120 chr3R:20818794-20818914 2.92e-01 120 chrX:14923351-14923471 1.29e-03 45_[+4(8.28e-05)]_67 chr3L:10186016-10186136 4.82e-03 84_[+1(5.55e-05)]_4_[+1(5.55e-05)]_\ 16 chr3R:30277936-30278056 3.14e-05 47_[+4(8.28e-05)]_41_[+1(1.79e-05)]_\ 16 chr3L:1969931-1970051 6.38e-02 120 chr3R:23557415-23557535 1.45e-01 120 chr3L:21770430-21770550 9.17e-02 120 chr3R:12595577-12595697 3.87e-01 120 chr2R:14361993-14362113 2.42e-01 120 chr3L:19695136-19695256 8.00e-01 120 chrX:3099520-3099640 3.63e-04 93_[+5(3.68e-05)]_19 chr2R:6195911-6196031 4.16e-02 120 chr2R:12229200-12229320 4.30e-02 120 chr2L:10198972-10199092 2.16e-03 33_[+5(1.91e-05)]_79 chr3R:11172553-11172673 2.28e-01 120 chr3R:8250508-8250628 4.14e-01 120 chr3L:1208405-1208525 5.44e-01 120 chr2L:2677735-2677855 1.82e-01 120 chr2R:22896174-22896294 3.58e-01 120 chrX:16835375-16835495 7.18e-01 120 chr2L:18782578-18782698 1.67e-04 5_[+1(5.55e-05)]_11_[+3(5.54e-05)]_\ 88 chr2L:17131014-17131134 3.02e-02 77_[+2(5.27e-05)]_35 chr3L:5902357-5902477 4.39e-02 120 chr3R:27157943-27158063 3.89e-01 120 chr3R:23346030-23346150 2.99e-01 120 chr2L:19820247-19820367 2.73e-02 120 chr3L:2400499-2400619 3.12e-01 120 chr2L:7157571-7157691 6.12e-01 120 chrX:10319385-10319505 3.88e-02 120 chr3R:30278137-30278257 3.66e-03 71_[+4(6.95e-05)]_41 chr3L:180283-180403 2.93e-02 27_[+2(5.27e-05)]_85 chr3R:24549026-24549146 9.72e-02 120 chr3R:11499977-11500097 9.33e-02 26_[+2(5.27e-05)]_86 chr2L:15074776-15074896 5.19e-01 120 chr2R:23798261-23798381 6.73e-02 120 chr3R:4450722-4450842 1.84e-01 120 chrX:7226447-7226567 9.04e-02 34_[+5(3.68e-05)]_78 chr2R:24334176-24334296 6.64e-02 120 chr2L:15035488-15035608 2.58e-01 120 chr3R:10972390-10972510 2.64e-01 120 chrX:13305542-13305662 4.95e-01 120 chr3L:5691401-5691521 8.08e-02 120 chr3L:21099977-21100097 8.32e-04 120 chr2R:19155221-19155341 5.08e-01 120 chr2R:16604103-16604223 4.19e-01 120 chr3L:4532051-4532171 1.21e-03 28_[+3(8.35e-05)]_84 chr2R:7282527-7282647 2.19e-01 120 chr2L:3163647-3163767 3.59e-01 120 chr3R:7750006-7750126 7.17e-01 120 chr3L:10481428-10481548 1.83e-01 120 chr3R:23174015-23174135 4.65e-01 120 chr2R:16398937-16399057 7.29e-04 93_[+4(1.41e-05)]_19 chr2R:5804704-5804824 4.30e-03 80_[+5(3.68e-05)]_32 chr2L:15552662-15552782 8.27e-01 120 chr2R:18878405-18878525 5.01e-03 92_[+1(5.55e-05)]_20 chr2L:3108037-3108157 3.89e-02 120 chr2L:2415209-2415329 8.64e-02 120 chr2L:10180200-10180320 2.21e-01 120 chrX:12003822-12003942 7.57e-02 120 chr2L:310240-310360 5.87e-01 120 chr2R:7106664-7106784 2.94e-02 120 chr2L:18503855-18503975 2.29e-02 54_[+1(9.12e-05)]_58 chr2R:21234767-21234887 1.06e-01 120 chrX:15633342-15633462 6.90e-03 103_[+1(5.55e-05)]_9 chr2L:20341848-20341968 1.54e-01 120 chrX:17506970-17507090 1.27e-03 69_[+2(5.27e-05)]_43 chr3R:12090526-12090646 1.32e-01 120 chr2R:8676276-8676396 1.69e-01 120 chrX:20924917-20925037 1.79e-04 39_[+1(7.46e-05)]_73 chr2L:12448448-12448568 9.85e-01 120 chr2R:15847236-15847356 2.37e-01 120 chr3L:3825499-3825619 1.30e-01 120 chr3L:12497066-12497186 1.28e-01 120 chr3R:26170811-26170931 2.54e-02 2_[+3(2.87e-05)]_110 chr3R:18849188-18849308 6.25e-02 120 chrX:11807004-11807124 8.27e-01 120 chr3R:12477370-12477490 1.58e-01 120 chr3R:15476142-15476262 3.09e-01 120 chrX:4840859-4840979 7.05e-02 56_[+1(5.55e-05)]_56 chrX:16216637-16216757 1.43e-01 120 chrX:5048260-5048380 9.14e-02 120 chrX:10930849-10930969 3.24e-01 120 chr3L:11197438-11197558 5.94e-02 120 chr2L:8898798-8898918 5.08e-03 87_[+4(1.41e-05)]_25 chrX:2366266-2366386 1.38e-01 120 chr3L:9974619-9974739 3.48e-03 58_[+5(1.91e-05)]_54 chr3L:4692768-4692888 8.95e-01 120 chr3L:17238075-17238195 4.32e-02 120 chr3L:19086214-19086334 2.41e-02 3_[+5(1.91e-05)]_109 chrX:12784843-12784963 7.74e-01 120 chr3L:7014070-7014190 4.03e-02 120 chr3R:22080347-22080467 4.76e-01 120 chr2L:22019332-22019452 8.42e-01 120 chr3L:20620475-20620595 1.49e-02 120 chr2R:15252871-15252991 2.98e-01 93_[+4(8.28e-05)]_19 chr2R:17108864-17108984 1.46e-02 111_[+1(7.46e-05)]_1 chr2L:18732453-18732573 4.38e-02 81_[+3(2.87e-05)]_31 chr3L:13919842-13919962 1.94e-04 37_[+2(5.27e-05)]_50_[+5(3.68e-05)]_\ 17 chrX:7196390-7196510 1.17e-01 120 chr2L:18733173-18733293 1.10e-01 120 chr3L:14219819-14219939 1.74e-01 120 chr2L:7084514-7084634 3.09e-01 120 chr3R:28682303-28682423 3.81e-01 120 chr3L:17415649-17415769 2.89e-02 5_[+5(5.74e-05)]_107 chr3L:19235230-19235350 3.02e-01 120 chr2L:13290927-13291047 3.51e-02 34_[+2(5.27e-05)]_78 chr3L:1628271-1628391 1.39e-04 1_[+4(1.41e-05)]_[+4(4.14e-05)]_103 chr3L:18185537-18185657 4.55e-01 120 chr3R:26262671-26262791 6.37e-01 120 chr2L:2855193-2855313 4.04e-03 10_[+5(5.74e-05)]_102 chr2R:18232762-18232882 6.67e-03 35_[+3(8.35e-05)]_[+3(2.87e-05)]_69 chr3R:16305785-16305905 6.99e-03 27_[+1(5.55e-05)]_85 chr3L:16543283-16543403 9.10e-02 120 chr3R:26318331-26318451 2.02e-02 1_[+3(2.87e-05)]_111 chr3R:22042414-22042534 5.70e-02 5_[+5(3.68e-05)]_107 chr3R:20714496-20714616 8.35e-03 120 chr3L:2896760-2896880 2.27e-02 24_[+4(4.14e-05)]_88 chr2L:8012730-8012850 2.04e-01 9_[+1(5.55e-05)]_103 chr3R:13401702-13401822 9.55e-01 120 chr3R:26017360-26017480 5.29e-02 71_[+4(4.14e-05)]_41 chr2R:18947335-18947455 1.19e-03 120 chr2R:13623014-13623134 4.89e-02 120 chr2L:5146371-5146491 3.94e-01 120 chrX:2036387-2036507 1.13e-03 110_[+3(2.87e-05)]_2 chr3L:21048055-21048175 4.89e-02 120 chr2R:7098527-7098647 8.42e-01 120 chr3R:25329195-25329315 4.56e-01 120 chr3R:10686951-10687071 1.24e-02 120 chr3L:20695289-20695409 1.97e-01 120 chr2R:14435895-14436015 1.89e-03 74_[+1(7.46e-05)]_38 chrX:14322163-14322283 1.36e-01 120 chr3R:13258675-13258795 3.44e-02 94_[+1(5.55e-05)]_18 chr2L:17752432-17752552 1.95e-02 66_[+3(5.54e-05)]_46 chrX:5340195-5340315 2.21e-02 52_[+5(1.91e-05)]_60 chr2R:24631063-24631183 6.53e-01 120 chr4:1088804-1088924 7.03e-01 120 chr3R:25308291-25308411 1.24e-01 120 chr2L:5658530-5658650 8.83e-02 109_[+2(5.27e-05)]_3 chr2R:21214859-21214979 2.09e-02 120 chr2R:13079467-13079587 1.91e-01 120 chr2R:17087495-17087615 3.37e-01 85_[+3(8.35e-05)]_27 chr2R:17479163-17479283 1.53e-01 120 chrX:18930330-18930450 1.00e-01 120 chr3L:18139396-18139516 1.00e-01 120 chr2R:19356417-19356537 4.10e-01 120 chr2L:10457690-10457810 6.28e-03 54_[+4(1.41e-05)]_58 chr3R:20978184-20978304 6.28e-03 71_[+5(3.68e-05)]_31_[+5(3.68e-05)]_\ 2 chr2L:11582189-11582309 6.17e-03 22_[+4(1.41e-05)]_90 chr3R:15537188-15537308 8.08e-01 120 chr3R:22042205-22042325 1.95e-01 120 chr3R:27988264-27988384 1.03e-02 120 chr3L:16572260-16572380 4.51e-02 102_[+3(5.54e-05)]_10 chr2L:21107799-21107919 3.09e-01 120 chr3L:16957452-16957572 4.25e-01 120 chr3L:14205402-14205522 3.82e-02 120 chr3R:24894527-24894647 9.14e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************