******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hr96.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:4340331-4340451 1.0000 120 chrX:13933977-13934097 1.0000 120 chrX:10886531-10886651 1.0000 120 chr3R:8354121-8354241 1.0000 120 chr3R:8712239-8712359 1.0000 120 chrX:1508261-1508381 1.0000 120 chr3L:21193363-21193483 1.0000 120 chr3L:17000496-17000616 1.0000 120 chr2L:10514719-10514839 1.0000 120 chr3L:17907005-17907125 1.0000 120 chrX:2685209-2685329 1.0000 120 chrX:13935703-13935823 1.0000 120 chr2R:7407238-7407358 1.0000 120 chrX:11142065-11142185 1.0000 120 chr3R:21296856-21296976 1.0000 120 chr3L:9053014-9053134 1.0000 120 chr2R:7614255-7614375 1.0000 120 chr3L:5641709-5641829 1.0000 120 chr2R:15815061-15815181 1.0000 120 chr3L:5247247-5247367 1.0000 120 chr2R:16819417-16819537 1.0000 120 chrX:5956788-5956908 1.0000 120 chrX:6705535-6705655 1.0000 120 chr3L:9128728-9128848 1.0000 120 chr3R:20827437-20827557 1.0000 120 chr3R:9075050-9075170 1.0000 120 chr3R:10081588-10081708 1.0000 120 chrX:1031448-1031568 1.0000 120 chr2L:7726498-7726618 1.0000 120 chrX:11088953-11089073 1.0000 120 chrX:19308754-19308874 1.0000 120 chrX:2012128-2012248 1.0000 120 chrX:3446313-3446433 1.0000 120 chr2L:18985932-18986052 1.0000 120 chrX:15077927-15078047 1.0000 120 chr2R:16127912-16128032 1.0000 120 chr3L:9690901-9691021 1.0000 120 chr2R:9830231-9830351 1.0000 120 chr2R:12590145-12590265 1.0000 120 chrX:6333271-6333391 1.0000 120 chr3R:20545715-20545835 1.0000 120 chr2R:18053956-18054076 1.0000 120 chr2L:16522940-16523060 1.0000 120 chrX:4614438-4614558 1.0000 120 chr2L:12620081-12620201 1.0000 120 chr2L:16040354-16040474 1.0000 120 chr2L:13821265-13821385 1.0000 120 chrX:11087560-11087680 1.0000 120 chrX:16423197-16423317 1.0000 120 chr2R:1515032-1515152 1.0000 120 chr2L:16672409-16672529 1.0000 120 chr3R:21954071-21954191 1.0000 120 chrX:11095706-11095826 1.0000 120 chrX:3265994-3266114 1.0000 120 chr3R:28025405-28025525 1.0000 120 chr2R:6759164-6759284 1.0000 120 chr2L:1086634-1086754 1.0000 120 chr3L:9821426-9821546 1.0000 120 chr3L:17054061-17054181 1.0000 120 chrX:19579341-19579461 1.0000 120 chrX:20468406-20468526 1.0000 120 chr3R:10311552-10311672 1.0000 120 chrX:8973255-8973375 1.0000 120 chr2L:4332267-4332387 1.0000 120 chr3R:21587586-21587706 1.0000 120 chr2L:6079400-6079520 1.0000 120 chr3R:25295440-25295560 1.0000 120 chrX:9586177-9586297 1.0000 120 chr2L:5304474-5304594 1.0000 120 chr2L:2866028-2866148 1.0000 120 chr3R:8718568-8718688 1.0000 120 chrX:10757826-10757946 1.0000 120 chr2R:19191707-19191827 1.0000 120 chr3R:10096133-10096253 1.0000 120 chr3L:11180071-11180191 1.0000 120 chr2R:9607210-9607330 1.0000 120 chr3L:448145-448265 1.0000 120 chr3R:24116396-24116516 1.0000 120 chr3R:22816539-22816659 1.0000 120 chr3L:16384448-16384568 1.0000 120 chr2R:8447640-8447760 1.0000 120 chr3L:4664023-4664143 1.0000 120 chr2R:21206206-21206326 1.0000 120 chrX:20661842-20661962 1.0000 120 chrX:13936350-13936470 1.0000 120 chr2R:22109275-22109395 1.0000 120 chrX:15497535-15497655 1.0000 120 chr3L:781732-781852 1.0000 120 chr3R:10380102-10380222 1.0000 120 chr3L:6036343-6036463 1.0000 120 chr3R:28905245-28905365 1.0000 120 chr3L:7158095-7158215 1.0000 120 chr2L:940643-940763 1.0000 120 chrX:10841967-10842087 1.0000 120 chr2L:16522693-16522813 1.0000 120 chr2R:22571931-22572051 1.0000 120 chrX:2212606-2212726 1.0000 120 chr2L:9754938-9755058 1.0000 120 chr3L:9095788-9095908 1.0000 120 chr3R:23519872-23519992 1.0000 120 chr3R:9948898-9949018 1.0000 120 chrX:11426073-11426193 1.0000 120 chr2L:20674207-20674327 1.0000 120 chr2L:5302408-5302528 1.0000 120 chr3R:26464567-26464687 1.0000 120 chrX:2744789-2744909 1.0000 120 chrX:115197-115317 1.0000 120 chr2L:7952043-7952163 1.0000 120 chr3R:13782791-13782911 1.0000 120 chrX:14209437-14209557 1.0000 120 chrX:16893222-16893342 1.0000 120 chr3L:8673731-8673851 1.0000 120 chr2L:14221265-14221385 1.0000 120 chr2L:19433458-19433578 1.0000 120 chr2R:21701896-21702016 1.0000 120 chrX:9401190-9401310 1.0000 120 chr3L:7856459-7856579 1.0000 120 chrX:11730167-11730287 1.0000 120 chr2R:6920592-6920712 1.0000 120 chr2R:21409759-21409879 1.0000 120 chrX:5516179-5516299 1.0000 120 chrX:6641699-6641819 1.0000 120 chr3R:10075494-10075614 1.0000 120 chr2R:12642895-12643015 1.0000 120 chr2R:7153315-7153435 1.0000 120 chr3L:20241787-20241907 1.0000 120 chr3L:3772749-3772869 1.0000 120 chr2R:11338906-11339026 1.0000 120 chr2R:8671484-8671604 1.0000 120 chr2L:5302995-5303115 1.0000 120 chr2L:6872497-6872617 1.0000 120 chrX:9061349-9061469 1.0000 120 chr3R:16501178-16501298 1.0000 120 chr3R:10083263-10083383 1.0000 120 chr3L:8842537-8842657 1.0000 120 chr4:1029360-1029480 1.0000 120 chr2R:22911851-22911971 1.0000 120 chr3R:27926858-27926978 1.0000 120 chr3R:9931266-9931386 1.0000 120 chr3L:10504757-10504877 1.0000 120 chr3R:21949087-21949207 1.0000 120 chr2R:23672672-23672792 1.0000 120 chr2R:22940742-22940862 1.0000 120 chr3L:17257360-17257480 1.0000 120 chrX:5954547-5954667 1.0000 120 chr2L:6447751-6447871 1.0000 120 chr3R:7947508-7947628 1.0000 120 chr3L:8628424-8628544 1.0000 120 chrX:23010794-23010914 1.0000 120 chr2R:20306653-20306773 1.0000 120 chr3L:14204524-14204644 1.0000 120 chr2R:11452433-11452553 1.0000 120 chr3L:8580872-8580992 1.0000 120 chr2R:6759368-6759488 1.0000 120 chrX:11822187-11822307 1.0000 120 chrX:3447805-3447925 1.0000 120 chr3L:629091-629211 1.0000 120 chr2R:24687450-24687570 1.0000 120 chr3R:23774007-23774127 1.0000 120 chr3L:22053491-22053611 1.0000 120 chr3L:13480545-13480665 1.0000 120 chr2L:17589880-17590000 1.0000 120 chr3L:9059856-9059976 1.0000 120 chr3R:16008511-16008631 1.0000 120 chr3R:23993504-23993624 1.0000 120 chr2R:12169071-12169191 1.0000 120 chr3R:7790608-7790728 1.0000 120 chr2L:559467-559587 1.0000 120 chr2R:22657825-22657945 1.0000 120 chr3R:19212911-19213031 1.0000 120 chrX:21519357-21519477 1.0000 120 chr3L:1612303-1612423 1.0000 120 chr3R:11969453-11969573 1.0000 120 chrX:17423436-17423556 1.0000 120 chr2R:9078629-9078749 1.0000 120 chr2L:8942036-8942156 1.0000 120 chrX:21067455-21067575 1.0000 120 chrX:1773584-1773704 1.0000 120 chr3L:9072132-9072252 1.0000 120 chr2L:6080507-6080627 1.0000 120 chrX:2107892-2108012 1.0000 120 chr2L:2363022-2363142 1.0000 120 chr2R:10799799-10799919 1.0000 120 chr3R:4281666-4281786 1.0000 120 chrX:6077374-6077494 1.0000 120 chr3L:16166780-16166900 1.0000 120 chr3R:26261014-26261134 1.0000 120 chrX:17694219-17694339 1.0000 120 chrX:2270189-2270309 1.0000 120 chr2R:21604254-21604374 1.0000 120 chrX:1976354-1976474 1.0000 120 chr2L:7790792-7790912 1.0000 120 chrX:8230625-8230745 1.0000 120 chr2R:16343657-16343777 1.0000 120 chr3R:7505033-7505153 1.0000 120 chr3L:20386216-20386336 1.0000 120 chr2R:9554718-9554838 1.0000 120 chr2R:13438514-13438634 1.0000 120 chr3L:17401050-17401170 1.0000 120 chr2R:12953542-12953662 1.0000 120 chr3R:4706297-4706417 1.0000 120 chr3R:30454379-30454499 1.0000 120 chrX:6090967-6091087 1.0000 120 chrX:20170064-20170184 1.0000 120 chr3R:21195733-21195853 1.0000 120 chr3L:4068587-4068707 1.0000 120 chr2L:1970824-1970944 1.0000 120 chr2L:16451060-16451180 1.0000 120 chr3R:16356783-16356903 1.0000 120 chr3R:17002905-17003025 1.0000 120 chr3L:3209098-3209218 1.0000 120 chr3R:10212895-10213015 1.0000 120 chr2R:16338117-16338237 1.0000 120 chr3R:15537181-15537301 1.0000 120 chr3R:7945149-7945269 1.0000 120 chr3L:22837809-22837929 1.0000 120 chr3R:31250528-31250648 1.0000 120 chr3R:31194750-31194870 1.0000 120 chr3R:5694597-5694717 1.0000 120 chrX:18407437-18407557 1.0000 120 chr3R:18582349-18582469 1.0000 120 chr3R:19642620-19642740 1.0000 120 chr2L:6967924-6968044 1.0000 120 chr2R:24747661-24747781 1.0000 120 chr3R:16158256-16158376 1.0000 120 chrX:21043258-21043378 1.0000 120 chr3R:10166456-10166576 1.0000 120 chr3L:5923836-5923956 1.0000 120 chrX:21028239-21028359 1.0000 120 chr3L:12799168-12799288 1.0000 120 chr2R:16230610-16230730 1.0000 120 chr3L:14510140-14510260 1.0000 120 chr2L:8959096-8959216 1.0000 120 chr2R:10554198-10554318 1.0000 120 chr2R:6812203-6812323 1.0000 120 chr3L:19905639-19905759 1.0000 120 chr2L:13461061-13461181 1.0000 120 chr3L:10325831-10325951 1.0000 120 chr2L:20078993-20079113 1.0000 120 chr3L:2800486-2800606 1.0000 120 chr3L:5975891-5976011 1.0000 120 chrX:15080021-15080141 1.0000 120 chr3L:16002107-16002227 1.0000 120 chr3R:21180485-21180605 1.0000 120 chr2L:1117029-1117149 1.0000 120 chrX:15511430-15511550 1.0000 120 chr3L:21971916-21972036 1.0000 120 chr3L:9096871-9096991 1.0000 120 chrX:1466946-1467066 1.0000 120 chrX:3481134-3481254 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Hr96/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hr96.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.288 C 0.208 G 0.214 T 0.29 Background letter frequencies (from file dataset with add-one prior applied): A 0.288 C 0.208 G 0.214 T 0.29 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CVSCWSCC MEME-1 width = 8 sites = 28 llr = 250 E-value = 6.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CVSCWSCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :3::5::: pos.-specific C a45a:6aa probability G :35::4:: matrix T ::::5::: bits 2.3 * * ** 2.0 * * ** 1.8 * * ** 1.6 * * ** Relative 1.4 * * *** Entropy 1.1 * ** *** (12.9 bits) 0.9 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCCACCC consensus GG TG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVSCWSCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16002107-16002227 15 4.85e-06 GCTCAGTCGG CCCCACCC TCCTATTTTT chr3R:4706297-4706417 92 9.84e-06 TTCCGTACAA CCGCACCC ATATTTGCTC chr3R:21587586-21587706 107 9.84e-06 GTGCCAAGTG CCGCACCC ACCCCT chr3L:17054061-17054181 23 9.84e-06 TCCCATTTTT CCGCACCC ACAAGATGCC chr2L:16451060-16451180 59 1.97e-05 GTAGTACGTC CCCCTCCC CAAAGTATAT chr2L:2363022-2363142 80 1.97e-05 TTTGTTTCTC CCCCTCCC TTCCGATCAT chr2R:24687450-24687570 6 1.97e-05 GTCTT CGCCACCC CTACTTTTGT chr3L:5641709-5641829 94 1.97e-05 AAAGGGTTGC CGCCACCC CCCCTGAAAA chr2L:1970824-1970944 50 3.49e-05 CCTCGACACC CCGCTCCC ATCACTCGTG chr3L:13480545-13480665 95 3.49e-05 CGAGATCCAT CCGCTCCC CAACAGCTGT chr3R:28025405-28025525 62 4.50e-05 TGTTCGATGG CGCCTCCC CTTTGGATAC chr3R:8712239-8712359 57 4.50e-05 CACTCGCACT CGCCTCCC GAGAATCCGA chr2L:6080507-6080627 56 6.04e-05 GAACCACTCC CGCCAGCC CCCCGCGTAT chr2R:22657825-22657945 87 6.04e-05 CTCAGTGCAA CGCCAGCC AGCAAAGCGA chrX:10841967-10842087 93 6.04e-05 CGAATGTCTT CGCCAGCC AGCACTGCCA chrX:15077927-15078047 38 6.04e-05 GACCTTTGAA CCCCTGCC ACCGCATCGA chrX:21067455-21067575 88 7.08e-05 TGGGAAGTCG CCGCTGCC ATTAGCTTTT chr3L:16384448-16384568 11 7.08e-05 TTTGCTAAGG CCGCTGCC GGAGGAGGAA chr3L:17401050-17401170 100 8.27e-05 ATTGCACCAG CACCACCC CCCTTTTGGG chrX:2270189-2270309 91 8.27e-05 TCCTGCTTCC CACCACCC CTTCTTTCAC chr3R:16356783-16356903 95 9.49e-05 TCCGCTGATT CGGCTGCC TCCTAACTAA chr2R:15815061-15815181 107 9.49e-05 GCGACGGCAA CGGCTGCC AATGTC chr3R:23993504-23993624 91 1.02e-04 TCGATGCGGG CACCTCCC TCCCCTACTG chr3R:27926858-27926978 104 1.16e-04 CCGCCCTCAG CAGCTCCC CTCTCTCCT chr3R:16158256-16158376 20 1.23e-04 TTGTTGCCGC CAGCAGCC AAAAGACAAG chr3R:23774007-23774127 16 1.23e-04 GTGGGAACAA CAGCAGCC ATGGCCAGTG chr3R:26464567-26464687 53 1.23e-04 GTAACAAACT CAGCAGCC AGAGTTCGCA chr3R:10096133-10096253 43 1.23e-04 GATGAGAATG CAGCAGCC TGCAAACTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVSCWSCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16002107-16002227 4.9e-06 14_[+1]_98 chr3R:4706297-4706417 9.8e-06 91_[+1]_21 chr3R:21587586-21587706 9.8e-06 106_[+1]_6 chr3L:17054061-17054181 9.8e-06 22_[+1]_90 chr2L:16451060-16451180 2e-05 58_[+1]_54 chr2L:2363022-2363142 2e-05 79_[+1]_33 chr2R:24687450-24687570 2e-05 5_[+1]_107 chr3L:5641709-5641829 2e-05 93_[+1]_19 chr2L:1970824-1970944 3.5e-05 49_[+1]_63 chr3L:13480545-13480665 3.5e-05 94_[+1]_18 chr3R:28025405-28025525 4.5e-05 61_[+1]_51 chr3R:8712239-8712359 4.5e-05 56_[+1]_56 chr2L:6080507-6080627 6e-05 55_[+1]_57 chr2R:22657825-22657945 6e-05 86_[+1]_26 chrX:10841967-10842087 6e-05 92_[+1]_20 chrX:15077927-15078047 6e-05 37_[+1]_75 chrX:21067455-21067575 7.1e-05 87_[+1]_25 chr3L:16384448-16384568 7.1e-05 10_[+1]_102 chr3L:17401050-17401170 8.3e-05 99_[+1]_13 chrX:2270189-2270309 8.3e-05 90_[+1]_22 chr3R:16356783-16356903 9.5e-05 94_[+1]_18 chr2R:15815061-15815181 9.5e-05 106_[+1]_6 chr3R:23993504-23993624 0.0001 90_[+1]_22 chr3R:27926858-27926978 0.00012 103_[+1]_9 chr3R:16158256-16158376 0.00012 19_[+1]_93 chr3R:23774007-23774127 0.00012 15_[+1]_97 chr3R:26464567-26464687 0.00012 52_[+1]_60 chr3R:10096133-10096253 0.00012 42_[+1]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVSCWSCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CVSCWSCC width=8 seqs=28 chr3L:16002107-16002227 ( 15) CCCCACCC 1 chr3R:4706297-4706417 ( 92) CCGCACCC 1 chr3R:21587586-21587706 ( 107) CCGCACCC 1 chr3L:17054061-17054181 ( 23) CCGCACCC 1 chr2L:16451060-16451180 ( 59) CCCCTCCC 1 chr2L:2363022-2363142 ( 80) CCCCTCCC 1 chr2R:24687450-24687570 ( 6) CGCCACCC 1 chr3L:5641709-5641829 ( 94) CGCCACCC 1 chr2L:1970824-1970944 ( 50) CCGCTCCC 1 chr3L:13480545-13480665 ( 95) CCGCTCCC 1 chr3R:28025405-28025525 ( 62) CGCCTCCC 1 chr3R:8712239-8712359 ( 57) CGCCTCCC 1 chr2L:6080507-6080627 ( 56) CGCCAGCC 1 chr2R:22657825-22657945 ( 87) CGCCAGCC 1 chrX:10841967-10842087 ( 93) CGCCAGCC 1 chrX:15077927-15078047 ( 38) CCCCTGCC 1 chrX:21067455-21067575 ( 88) CCGCTGCC 1 chr3L:16384448-16384568 ( 11) CCGCTGCC 1 chr3L:17401050-17401170 ( 100) CACCACCC 1 chrX:2270189-2270309 ( 91) CACCACCC 1 chr3R:16356783-16356903 ( 95) CGGCTGCC 1 chr2R:15815061-15815181 ( 107) CGGCTGCC 1 chr3R:23993504-23993624 ( 91) CACCTCCC 1 chr3R:27926858-27926978 ( 104) CAGCTCCC 1 chr3R:16158256-16158376 ( 20) CAGCAGCC 1 chr3R:23774007-23774127 ( 16) CAGCAGCC 1 chr3R:26464567-26464687 ( 53) CAGCAGCC 1 chr3R:10096133-10096253 ( 43) CAGCAGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVSCWSCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 6.8e+001 -1145 226 -1145 -1145 -1 92 59 -1145 -1145 126 122 -1145 -1145 226 -1145 -1145 90 -1145 -1145 68 -1145 146 100 -1145 -1145 226 -1145 -1145 -1145 226 -1145 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVSCWSCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 6.8e+001 0.000000 1.000000 0.000000 0.000000 0.285714 0.392857 0.321429 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.535714 0.000000 0.000000 0.464286 0.000000 0.571429 0.428571 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVSCWSCC MEME-1 regular expression -------------------------------------------------------------------------------- C[CGA][CG]C[AT][CG]CC -------------------------------------------------------------------------------- Time 8.44 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGAAAGT MEME-2 width = 8 sites = 8 llr = 87 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGAAAGT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::aaa:: pos.-specific C :a:::::: probability G ::a:::a: matrix T a::::::a bits 2.3 ** * 2.0 ** * 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (15.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCGAAAGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAAAGT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2744789-2744909 77 1.91e-05 GCTTGTTTCT TCGAAAGT TTCCCATAAT chr2L:9754938-9755058 97 1.91e-05 AACATCTGAA TCGAAAGT TTATTTTTGT chrX:2212606-2212726 98 1.91e-05 TATGTCTGTG TCGAAAGT CCCCTTCTCG chrX:10841967-10842087 36 1.91e-05 TCCATGGCAT TCGAAAGT AACCAAAAAA chr3R:24116396-24116516 51 1.91e-05 AGGTACTCCT TCGAAAGT CTTATAAATA chr2L:16672409-16672529 97 1.91e-05 AAGTAGATAT TCGAAAGT AAGGTTACAA chr2R:12590145-12590265 63 1.91e-05 ACTTTCCAGC TCGAAAGT TCAAAGTTCA chr3L:17000496-17000616 68 1.91e-05 GAAGGTGTCG TCGAAAGT CACATGACGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAAAGT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2744789-2744909 1.9e-05 76_[+2]_36 chr2L:9754938-9755058 1.9e-05 96_[+2]_16 chrX:2212606-2212726 1.9e-05 97_[+2]_15 chrX:10841967-10842087 1.9e-05 35_[+2]_77 chr3R:24116396-24116516 1.9e-05 50_[+2]_62 chr2L:16672409-16672529 1.9e-05 96_[+2]_16 chr2R:12590145-12590265 1.9e-05 62_[+2]_50 chr3L:17000496-17000616 1.9e-05 67_[+2]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAAAGT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGAAAGT width=8 seqs=8 chrX:2744789-2744909 ( 77) TCGAAAGT 1 chr2L:9754938-9755058 ( 97) TCGAAAGT 1 chrX:2212606-2212726 ( 98) TCGAAAGT 1 chrX:10841967-10842087 ( 36) TCGAAAGT 1 chr3R:24116396-24116516 ( 51) TCGAAAGT 1 chr2L:16672409-16672529 ( 97) TCGAAAGT 1 chr2R:12590145-12590265 ( 63) TCGAAAGT 1 chr3L:17000496-17000616 ( 68) TCGAAAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAAAGT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 1.5e+004 -965 -965 -965 178 -965 226 -965 -965 -965 -965 222 -965 180 -965 -965 -965 180 -965 -965 -965 180 -965 -965 -965 -965 -965 222 -965 -965 -965 -965 178 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAAAGT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.5e+004 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAAAGT MEME-2 regular expression -------------------------------------------------------------------------------- TCGAAAGT -------------------------------------------------------------------------------- Time 14.72 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGGGGCG MEME-3 width = 8 sites = 21 llr = 196 E-value = 6.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 911:2::: pos.-specific C :13:::a: probability G 186a8a:a matrix T :::::::: bits 2.3 * * 2.0 * *** 1.8 * *** 1.6 * *** Relative 1.4 ** ***** Entropy 1.1 ** ***** (13.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGGGGGCG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6759368-6759488 13 5.75e-06 AAGCCCAAGT AGGGGGCG GTTTACATAG chr2R:11452433-11452553 34 5.75e-06 AGAGCTCGCC AGGGGGCG CTGACAAACT chrX:6641699-6641819 62 5.75e-06 AAACCACTAT AGGGGGCG AGCAAAAGGT chr3L:9053014-9053134 53 5.75e-06 GAGTACCCAA AGGGGGCG TTGGTTGGCA chrX:6077374-6077494 51 1.13e-05 GTGCGGTAAA AGCGGGCG GAGCGGTACG chr3R:7790608-7790728 47 1.13e-05 CGTGTTTAGC AGCGGGCG CGTTAGGATC chr3R:9948898-9949018 102 1.13e-05 TGGAAAAATG AGCGGGCG AAAAGCCAGG chr3R:7947508-7947628 88 1.91e-05 AGAAAGAGAG AGGGAGCG ATTGAGCAGT chrX:5956788-5956908 44 1.91e-05 AGCTGATATC AGGGAGCG ATCGGGGCGC chr2R:16127912-16128032 7 2.34e-05 GGAAGG GGGGGGCG GGGCTATTCT chrX:10841967-10842087 112 2.90e-05 GCACTGCCAC ACGGGGCG T chrX:9586177-9586297 58 2.90e-05 CGGGAGCTGA ACGGGGCG ATGAAGAGCG chr3R:19212911-19213031 58 3.67e-05 GAAAATGGAA AGAGGGCG AGAGCTGCAG chrX:16423197-16423317 55 3.67e-05 GAAGAGAGCG AGAGGGCG ACCAATACAA chr3R:19642620-19642740 45 5.20e-05 TCGCTGATTT AGCGAGCG ACAACAGAGC chr3L:22837809-22837929 68 5.20e-05 CCGAGTCGGA AAGGGGCG GGGGAGCCAG chrX:6090967-6091087 50 5.20e-05 CACTGTATTA AGCGAGCG CTGTTAACTG chr2L:7952043-7952163 74 5.20e-05 GAACTGTTGT AAGGGGCG GCGGGTGAGT chr2R:10554198-10554318 94 5.61e-05 GGTTTTCGGC GGCGGGCG GTAGAAGGGT chr3R:28905245-28905365 89 6.72e-05 CTTTTTGATG AGGCGGCG CCGCGATCAA chrX:13933977-13934097 22 7.31e-05 AGAGAGAGAG AGGGGGGG TGGCGAGATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6759368-6759488 5.8e-06 12_[+3]_100 chr2R:11452433-11452553 5.8e-06 33_[+3]_79 chrX:6641699-6641819 5.8e-06 61_[+3]_51 chr3L:9053014-9053134 5.8e-06 52_[+3]_60 chrX:6077374-6077494 1.1e-05 50_[+3]_62 chr3R:7790608-7790728 1.1e-05 46_[+3]_66 chr3R:9948898-9949018 1.1e-05 101_[+3]_11 chr3R:7947508-7947628 1.9e-05 87_[+3]_25 chrX:5956788-5956908 1.9e-05 43_[+3]_69 chr2R:16127912-16128032 2.3e-05 6_[+3]_106 chrX:10841967-10842087 2.9e-05 111_[+3]_1 chrX:9586177-9586297 2.9e-05 57_[+3]_55 chr3R:19212911-19213031 3.7e-05 57_[+3]_55 chrX:16423197-16423317 3.7e-05 54_[+3]_58 chr3R:19642620-19642740 5.2e-05 44_[+3]_68 chr3L:22837809-22837929 5.2e-05 67_[+3]_45 chrX:6090967-6091087 5.2e-05 49_[+3]_63 chr2L:7952043-7952163 5.2e-05 73_[+3]_39 chr2R:10554198-10554318 5.6e-05 93_[+3]_19 chr3R:28905245-28905365 6.7e-05 88_[+3]_24 chrX:13933977-13934097 7.3e-05 21_[+3]_91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGGGGCG width=8 seqs=21 chr2R:6759368-6759488 ( 13) AGGGGGCG 1 chr2R:11452433-11452553 ( 34) AGGGGGCG 1 chrX:6641699-6641819 ( 62) AGGGGGCG 1 chr3L:9053014-9053134 ( 53) AGGGGGCG 1 chrX:6077374-6077494 ( 51) AGCGGGCG 1 chr3R:7790608-7790728 ( 47) AGCGGGCG 1 chr3R:9948898-9949018 ( 102) AGCGGGCG 1 chr3R:7947508-7947628 ( 88) AGGGAGCG 1 chrX:5956788-5956908 ( 44) AGGGAGCG 1 chr2R:16127912-16128032 ( 7) GGGGGGCG 1 chrX:10841967-10842087 ( 112) ACGGGGCG 1 chrX:9586177-9586297 ( 58) ACGGGGCG 1 chr3R:19212911-19213031 ( 58) AGAGGGCG 1 chrX:16423197-16423317 ( 55) AGAGGGCG 1 chr3R:19642620-19642740 ( 45) AGCGAGCG 1 chr3L:22837809-22837929 ( 68) AAGGGGCG 1 chrX:6090967-6091087 ( 50) AGCGAGCG 1 chr2L:7952043-7952163 ( 74) AAGGGGCG 1 chr2R:10554198-10554318 ( 94) GGCGGGCG 1 chr3R:28905245-28905365 ( 89) AGGCGGCG 1 chrX:13933977-13934097 ( 22) AGGGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3794 E= 6.1e+002 165 -1104 -117 -1104 -159 -113 192 -1104 -159 46 153 -1104 -1104 -213 215 -1104 -59 -1104 192 -1104 -1104 -1104 222 -1104 -1104 219 -217 -1104 -1104 -1104 222 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 6.1e+002 0.904762 0.000000 0.095238 0.000000 0.095238 0.095238 0.809524 0.000000 0.095238 0.285714 0.619048 0.000000 0.000000 0.047619 0.952381 0.000000 0.190476 0.000000 0.809524 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.952381 0.047619 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-3 regular expression -------------------------------------------------------------------------------- AG[GC]GGGCG -------------------------------------------------------------------------------- Time 20.99 secs. ******************************************************************************** ******************************************************************************** MOTIF MAMADAAA MEME-4 width = 8 sites = 63 llr = 472 E-value = 4.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAMADAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 4a6a47aa pos.-specific C 6:4::3:: probability G ::::3::: matrix T ::::3::: bits 2.3 2.0 1.8 * * ** 1.6 * * ** Relative 1.4 * * ** Entropy 1.1 **** *** (10.8 bits) 0.9 **** *** 0.7 **** *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAAAAAAA consensus A C GC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAMADAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:8959096-8959216 61 5.96e-05 TTCATTAAAT CAAAAAAA ACATTGCGAA chr2R:16230610-16230730 58 5.96e-05 GATCGCCACA CAAAAAAA AAAACAATAT chr2R:12953542-12953662 92 5.96e-05 AATCAACATA CAAAAAAA GCACACAAAT chr2R:16343657-16343777 113 5.96e-05 AATCTTATTA CAAAAAAA chr2R:21701896-21702016 107 5.96e-05 TGTTGTTAAT CAAAAAAA TTCAGC chr2L:16522693-16522813 46 5.96e-05 TTGCCAAAGC CAAAGAAA ATAACTTAAA chrX:10841967-10842087 47 5.96e-05 CGAAAGTAAC CAAAAAAA ATAATAGCCA chrX:3265994-3266114 31 5.96e-05 aaaataaaac caaaaaaa aaaaGCAACT chrX:11095706-11095826 17 5.96e-05 GGCCACTTGA CAAAGAAA ACGGGCAACG chrX:4614438-4614558 42 5.96e-05 TATGTTTACA CAAAAAAA AAAAAAAACG chr3L:21193363-21193483 111 5.96e-05 CGGAAAACGG CAAAAAAA AA chr3L:9096871-9096991 7 1.03e-04 TGAGGC CACAGAAA CGAAACGAGC chrX:15080021-15080141 70 1.03e-04 TGCCGGGCAC CACAAAAA GTTGGGACTG chr3L:19905639-19905759 54 1.03e-04 TACGCATCGA CACAGAAA TGTTTTGAAA chr3L:22837809-22837929 103 1.03e-04 GGAGAGTGTG CACAAAAA CATTTGCCGG chr3R:7505033-7505153 75 1.03e-04 CCCGCCAAAG CACAAAAA GTTCTAAGCG chr2R:1515032-1515152 34 1.03e-04 aaagtctggt cacaaaaa ggcgggttgt chr3R:9075050-9075170 34 1.03e-04 TCGTAAACAA CACAAAAA TAAATGACTA chr3L:17907005-17907125 61 1.03e-04 AGAGAGGGCA CACAGAAA CAATAAAGCC chr3R:7945149-7945269 78 1.37e-04 TGTATACAAG CAAATAAA TTTAATAATG chr3L:8628424-8628544 81 1.37e-04 GCCAAAAACG CAAATAAA CAAGCGTCTA chr3L:3772749-3772869 53 1.37e-04 TTCACACTCG CAAATAAA TTCACATAAA chrX:10757826-10757946 112 1.37e-04 ACTTTAAGAA CAAATAAA A chr2L:16040354-16040474 53 1.37e-04 TAAATATATT CAAATAAA AAATCAAAAA chrX:10886531-10886651 79 1.37e-04 ACACTCATTG CAAATAAA GTGCCATCAT chr3L:10325831-10325951 87 2.05e-04 TTTTTGCGCG CACATAAA TTGTATATAA chr3L:12799168-12799288 69 2.05e-04 GCGAATATGC CACATAAA AGGTCTTTTT chr2R:10799799-10799919 86 2.05e-04 TTTATAATAA CACATAAA TCCTATTTTC chr2L:8942036-8942156 18 2.05e-04 CGAAAAATTT CAAAGCAA TATGACCACT chrX:21519357-21519477 96 2.05e-04 CAATAAAATT CACATAAA AAAGATAAAT chr2R:22911851-22911971 36 2.05e-04 GAACCACAAC CAAAGCAA TTAGCCGAGC chrX:15497535-15497655 102 2.05e-04 GCTCTTTATT CAAAGCAA TGCACGTTAG chr2R:19191707-19191827 35 2.05e-04 GCAAAGTCAA CAAAGCAA CAACAATTAG chrX:6333271-6333391 79 2.05e-04 GTGATCCCCC CAAAGCAA AACTTGAAGT chrX:11088953-11089073 92 2.05e-04 CTATTTTTGG CAAAGCAA GGGAATTTTT chr3L:16002107-16002227 61 3.19e-04 CTGCACAAAT AAAAAAAA TCTTAAGTCT chr2L:6967924-6968044 14 3.19e-04 CGGAAAATTA AAAAAAAA GTGATATGAG chr3L:17257360-17257480 12 3.19e-04 ATTTCACAAA CACAACAA ATAGTGTCTG chrX:14209437-14209557 35 3.19e-04 AATAATAATA AAAAGAAA TACAAATTTA chr2L:940643-940763 41 3.19e-04 GAAAGGACTA CACAGCAA AAAAGATTGT chr3R:22816539-22816659 22 3.19e-04 CAAAAATTAA AAAAGAAA ATCTATTGTG chrX:9586177-9586297 9 3.19e-04 aaaaggaa aaaaaaaa caaGCAGGAA chr3R:25295440-25295560 39 3.19e-04 TCATTGCACG CACAACAA CAACAACCAT chrX:19579341-19579461 11 3.19e-04 GGCGAGGCGA AAAAGAAA AAACGTTTGA chr3L:9821426-9821546 39 3.19e-04 TGTTTGTCGC CACAACAA TAACACCATC chr2R:9830231-9830351 57 3.19e-04 TAAACTGGGA AAAAAAAA CCTTTATACT chr3L:9128728-9128848 5 3.19e-04 AAGA AAAAGAAA TAAAAGCGGC chrX:2685209-2685329 90 3.19e-04 GAAGCTATGA AAAAGAAA GATATCCAAC chrX:1466946-1467066 23 3.78e-04 GGGCAGCAAC AACAGAAA CGAAGATGGA chr2R:22940742-22940862 88 3.78e-04 TTTCATTCAC AACAAAAA CACATGGCGT chrX:11730167-11730287 35 3.78e-04 ATGCTACAAA AACAAAAA ATATGTATTT chr2L:18985932-18986052 91 3.78e-04 GGCTTTTGCT AACAGAAA TTGCACTTAG chr3R:9931266-9931386 88 4.03e-04 TGTGACCAAG CAAATCAA ATTAGCGTCC chrX:3447805-3447925 47 4.69e-04 TGACTTAAAT AAAATAAA TTTCAGTATC chr3L:448145-448265 86 4.69e-04 TCCACGAATT AAAATAAA CCTCGGAATC chr3L:11180071-11180191 11 4.69e-04 GGCACTCGAA AAAATAAA GGTTAAGTAT chr3R:23519872-23519992 106 5.63e-04 GCATTGTGCA AACATAAA TAATAAA chr3R:10380102-10380222 3 5.63e-04 TA AAAAACAA CCCTTGGGTT chr2L:1086634-1086754 48 5.63e-04 CATATTTCTA AAAAACAA GAAGCCTTAA chrX:16423197-16423317 6 5.63e-04 AACCC AAAAACAA ATTCAACCGA chr2L:14221265-14221385 12 6.06e-04 ATGTCTGAAC AACAGCAA GGCTGTTTCA chr2L:20674207-20674327 45 6.06e-04 AAGACGTGAC AACAACAA GCCCCGAGTA chr3R:5694597-5694717 1 6.40e-04 . AAAATCAA AAAGATCTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAMADAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8959096-8959216 6e-05 60_[+4]_52 chr2R:16230610-16230730 6e-05 57_[+4]_55 chr2R:12953542-12953662 6e-05 91_[+4]_21 chr2R:16343657-16343777 6e-05 112_[+4] chr2R:21701896-21702016 6e-05 106_[+4]_6 chr2L:16522693-16522813 6e-05 45_[+4]_67 chrX:10841967-10842087 6e-05 46_[+4]_66 chrX:3265994-3266114 6e-05 30_[+4]_82 chrX:11095706-11095826 6e-05 16_[+4]_96 chrX:4614438-4614558 6e-05 41_[+4]_71 chr3L:21193363-21193483 6e-05 110_[+4]_2 chr3L:9096871-9096991 0.0001 6_[+4]_106 chrX:15080021-15080141 0.0001 69_[+4]_43 chr3L:19905639-19905759 0.0001 53_[+4]_59 chr3L:22837809-22837929 0.0001 102_[+4]_10 chr3R:7505033-7505153 0.0001 74_[+4]_38 chr2R:1515032-1515152 0.0001 33_[+4]_79 chr3R:9075050-9075170 0.0001 33_[+4]_79 chr3L:17907005-17907125 0.0001 60_[+4]_52 chr3R:7945149-7945269 0.00014 77_[+4]_35 chr3L:8628424-8628544 0.00014 80_[+4]_32 chr3L:3772749-3772869 0.00014 52_[+4]_60 chrX:10757826-10757946 0.00014 111_[+4]_1 chr2L:16040354-16040474 0.00014 52_[+4]_60 chrX:10886531-10886651 0.00014 78_[+4]_34 chr3L:10325831-10325951 0.0002 86_[+4]_26 chr3L:12799168-12799288 0.0002 68_[+4]_44 chr2R:10799799-10799919 0.0002 85_[+4]_27 chr2L:8942036-8942156 0.0002 17_[+4]_95 chrX:21519357-21519477 0.0002 95_[+4]_17 chr2R:22911851-22911971 0.0002 35_[+4]_77 chrX:15497535-15497655 0.0002 101_[+4]_11 chr2R:19191707-19191827 0.0002 34_[+4]_78 chrX:6333271-6333391 0.0002 78_[+4]_34 chrX:11088953-11089073 0.0002 91_[+4]_21 chr3L:16002107-16002227 0.00032 60_[+4]_52 chr2L:6967924-6968044 0.00032 13_[+4]_99 chr3L:17257360-17257480 0.00032 11_[+4]_101 chrX:14209437-14209557 0.00032 34_[+4]_78 chr2L:940643-940763 0.00032 40_[+4]_72 chr3R:22816539-22816659 0.00032 21_[+4]_91 chrX:9586177-9586297 0.00032 8_[+4]_104 chr3R:25295440-25295560 0.00032 38_[+4]_74 chrX:19579341-19579461 0.00032 10_[+4]_102 chr3L:9821426-9821546 0.00032 38_[+4]_74 chr2R:9830231-9830351 0.00032 56_[+4]_56 chr3L:9128728-9128848 0.00032 4_[+4]_108 chrX:2685209-2685329 0.00032 89_[+4]_23 chrX:1466946-1467066 0.00038 22_[+4]_90 chr2R:22940742-22940862 0.00038 87_[+4]_25 chrX:11730167-11730287 0.00038 34_[+4]_78 chr2L:18985932-18986052 0.00038 90_[+4]_22 chr3R:9931266-9931386 0.0004 87_[+4]_25 chrX:3447805-3447925 0.00047 46_[+4]_66 chr3L:448145-448265 0.00047 85_[+4]_27 chr3L:11180071-11180191 0.00047 10_[+4]_102 chr3R:23519872-23519992 0.00056 105_[+4]_7 chr3R:10380102-10380222 0.00056 2_[+4]_110 chr2L:1086634-1086754 0.00056 47_[+4]_65 chrX:16423197-16423317 0.00056 5_[+4]_107 chr2L:14221265-14221385 0.00061 11_[+4]_101 chr2L:20674207-20674327 0.00061 44_[+4]_68 chr3R:5694597-5694717 0.00064 [+4]_112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAMADAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAMADAAA width=8 seqs=63 chr2L:8959096-8959216 ( 61) CAAAAAAA 1 chr2R:16230610-16230730 ( 58) CAAAAAAA 1 chr2R:12953542-12953662 ( 92) CAAAAAAA 1 chr2R:16343657-16343777 ( 113) CAAAAAAA 1 chr2R:21701896-21702016 ( 107) CAAAAAAA 1 chr2L:16522693-16522813 ( 46) CAAAGAAA 1 chrX:10841967-10842087 ( 47) CAAAAAAA 1 chrX:3265994-3266114 ( 31) CAAAAAAA 1 chrX:11095706-11095826 ( 17) CAAAGAAA 1 chrX:4614438-4614558 ( 42) CAAAAAAA 1 chr3L:21193363-21193483 ( 111) CAAAAAAA 1 chr3L:9096871-9096991 ( 7) CACAGAAA 1 chrX:15080021-15080141 ( 70) CACAAAAA 1 chr3L:19905639-19905759 ( 54) CACAGAAA 1 chr3L:22837809-22837929 ( 103) CACAAAAA 1 chr3R:7505033-7505153 ( 75) CACAAAAA 1 chr2R:1515032-1515152 ( 34) CACAAAAA 1 chr3R:9075050-9075170 ( 34) CACAAAAA 1 chr3L:17907005-17907125 ( 61) CACAGAAA 1 chr3R:7945149-7945269 ( 78) CAAATAAA 1 chr3L:8628424-8628544 ( 81) CAAATAAA 1 chr3L:3772749-3772869 ( 53) CAAATAAA 1 chrX:10757826-10757946 ( 112) CAAATAAA 1 chr2L:16040354-16040474 ( 53) CAAATAAA 1 chrX:10886531-10886651 ( 79) CAAATAAA 1 chr3L:10325831-10325951 ( 87) CACATAAA 1 chr3L:12799168-12799288 ( 69) CACATAAA 1 chr2R:10799799-10799919 ( 86) CACATAAA 1 chr2L:8942036-8942156 ( 18) CAAAGCAA 1 chrX:21519357-21519477 ( 96) CACATAAA 1 chr2R:22911851-22911971 ( 36) CAAAGCAA 1 chrX:15497535-15497655 ( 102) CAAAGCAA 1 chr2R:19191707-19191827 ( 35) CAAAGCAA 1 chrX:6333271-6333391 ( 79) CAAAGCAA 1 chrX:11088953-11089073 ( 92) CAAAGCAA 1 chr3L:16002107-16002227 ( 61) AAAAAAAA 1 chr2L:6967924-6968044 ( 14) AAAAAAAA 1 chr3L:17257360-17257480 ( 12) CACAACAA 1 chrX:14209437-14209557 ( 35) AAAAGAAA 1 chr2L:940643-940763 ( 41) CACAGCAA 1 chr3R:22816539-22816659 ( 22) AAAAGAAA 1 chrX:9586177-9586297 ( 9) AAAAAAAA 1 chr3R:25295440-25295560 ( 39) CACAACAA 1 chrX:19579341-19579461 ( 11) AAAAGAAA 1 chr3L:9821426-9821546 ( 39) CACAACAA 1 chr2R:9830231-9830351 ( 57) AAAAAAAA 1 chr3L:9128728-9128848 ( 5) AAAAGAAA 1 chrX:2685209-2685329 ( 90) AAAAGAAA 1 chrX:1466946-1467066 ( 23) AACAGAAA 1 chr2R:22940742-22940862 ( 88) AACAAAAA 1 chrX:11730167-11730287 ( 35) AACAAAAA 1 chr2L:18985932-18986052 ( 91) AACAGAAA 1 chr3R:9931266-9931386 ( 88) CAAATCAA 1 chrX:3447805-3447925 ( 47) AAAATAAA 1 chr3L:448145-448265 ( 86) AAAATAAA 1 chr3L:11180071-11180191 ( 11) AAAATAAA 1 chr3R:23519872-23519992 ( 106) AACATAAA 1 chr3R:10380102-10380222 ( 3) AAAAACAA 1 chr2L:1086634-1086754 ( 48) AAAAACAA 1 chrX:16423197-16423317 ( 6) AAAAACAA 1 chr2L:14221265-14221385 ( 12) AACAGCAA 1 chr2L:20674207-20674327 ( 45) AACAACAA 1 chr3R:5694597-5694717 ( 1) AAAATCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAMADAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5371 E= 4.2e+004 34 161 -1262 -1262 180 -1262 -1262 -1262 114 81 -1262 -1262 180 -1262 -1262 -1262 57 -1262 57 -19 134 37 -1262 -1262 180 -1262 -1262 -1262 180 -1262 -1262 -1262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAMADAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 4.2e+004 0.365079 0.634921 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.634921 0.365079 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.317460 0.253968 0.730159 0.269841 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAMADAAA MEME-4 regular expression -------------------------------------------------------------------------------- [CA]A[AC]A[AGT][AC]AA -------------------------------------------------------------------------------- Time 27.21 secs. ******************************************************************************** ******************************************************************************** MOTIF CACCTCTC MEME-5 width = 8 sites = 4 llr = 46 E-value = 1.5e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACCTCTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C a:aa:a:a probability G :::::::: matrix T ::::a:a: bits 2.3 * ** * * 2.0 * ** * * 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (16.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACCTCTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCTCTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2270189-2270309 47 9.43e-06 TTTCCCTCGG CACCTCTC TTTTGCTCTC chrX:17694219-17694339 63 9.43e-06 CCCTTCGCTG CACCTCTC ACTCTCTCTT chr2R:22657825-22657945 10 9.43e-06 GGTAGCTAT CACCTCTC GACGATAAGA chrX:3446313-3446433 86 9.43e-06 CTCGTATTCA CACCTCTC AACTTGTCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCTCTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2270189-2270309 9.4e-06 46_[+5]_66 chrX:17694219-17694339 9.4e-06 62_[+5]_50 chr2R:22657825-22657945 9.4e-06 9_[+5]_103 chrX:3446313-3446433 9.4e-06 85_[+5]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCTCTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACCTCTC width=8 seqs=4 chrX:2270189-2270309 ( 47) CACCTCTC 1 chrX:17694219-17694339 ( 63) CACCTCTC 1 chr2R:22657825-22657945 ( 10) CACCTCTC 1 chrX:3446313-3446433 ( 86) CACCTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCTCTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 1.5e+005 -865 226 -865 -865 179 -865 -865 -865 -865 226 -865 -865 -865 226 -865 -865 -865 -865 -865 178 -865 226 -865 -865 -865 -865 -865 178 -865 226 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCTCTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCTCTC MEME-5 regular expression -------------------------------------------------------------------------------- CACCTCTC -------------------------------------------------------------------------------- Time 33.31 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:4340331-4340451 3.05e-01 120 chrX:13933977-13934097 1.20e-01 21_[+3(7.31e-05)]_91 chrX:10886531-10886651 5.21e-02 120 chr3R:8354121-8354241 5.63e-02 120 chr3R:8712239-8712359 8.45e-03 56_[+1(4.50e-05)]_56 chrX:1508261-1508381 8.13e-01 120 chr3L:21193363-21193483 5.36e-02 110_[+4(5.96e-05)]_2 chr3L:17000496-17000616 3.37e-02 67_[+2(1.91e-05)]_45 chr2L:10514719-10514839 7.05e-01 120 chr3L:17907005-17907125 7.20e-02 120 chrX:2685209-2685329 2.95e-01 120 chrX:13935703-13935823 9.48e-01 120 chr2R:7407238-7407358 2.89e-01 120 chrX:11142065-11142185 7.65e-01 120 chr3R:21296856-21296976 6.50e-01 120 chr3L:9053014-9053134 9.63e-02 52_[+3(5.75e-06)]_60 chr2R:7614255-7614375 4.11e-01 120 chr3L:5641709-5641829 2.37e-03 93_[+1(1.97e-05)]_19 chr2R:15815061-15815181 1.98e-01 106_[+1(9.49e-05)]_6 chr3L:5247247-5247367 7.87e-01 120 chr2R:16819417-16819537 3.58e-01 120 chrX:5956788-5956908 6.55e-02 43_[+3(1.91e-05)]_69 chrX:6705535-6705655 9.10e-01 120 chr3L:9128728-9128848 1.71e-02 120 chr3R:20827437-20827557 7.40e-01 120 chr3R:9075050-9075170 1.32e-02 120 chr3R:10081588-10081708 7.16e-01 120 chrX:1031448-1031568 5.23e-01 120 chr2L:7726498-7726618 6.75e-01 120 chrX:11088953-11089073 4.22e-01 120 chrX:19308754-19308874 6.22e-01 120 chrX:2012128-2012248 1.92e-02 120 chrX:3446313-3446433 3.25e-02 85_[+5(9.43e-06)]_27 chr2L:18985932-18986052 2.32e-01 120 chrX:15077927-15078047 9.23e-02 37_[+1(6.04e-05)]_75 chr2R:16127912-16128032 3.70e-02 6_[+3(2.34e-05)]_106 chr3L:9690901-9691021 5.63e-02 120 chr2R:9830231-9830351 3.78e-01 120 chr2R:12590145-12590265 8.01e-03 62_[+2(1.91e-05)]_50 chrX:6333271-6333391 1.23e-01 120 chr3R:20545715-20545835 1.55e-01 120 chr2R:18053956-18054076 8.83e-01 120 chr2L:16522940-16523060 9.69e-01 120 chrX:4614438-4614558 4.71e-02 41_[+4(5.96e-05)]_71 chr2L:12620081-12620201 4.09e-01 120 chr2L:16040354-16040474 4.75e-01 120 chr2L:13821265-13821385 7.10e-01 120 chrX:11087560-11087680 3.59e-01 120 chrX:16423197-16423317 4.25e-02 54_[+3(3.67e-05)]_58 chr2R:1515032-1515152 3.36e-02 120 chr2L:16672409-16672529 9.03e-02 96_[+2(1.91e-05)]_16 chr3R:21954071-21954191 9.95e-01 120 chrX:11095706-11095826 1.58e-01 16_[+4(5.96e-05)]_96 chrX:3265994-3266114 1.36e-01 30_[+4(5.96e-05)]_82 chr3R:28025405-28025525 1.43e-02 61_[+1(4.50e-05)]_51 chr2R:6759164-6759284 4.77e-01 120 chr2L:1086634-1086754 7.98e-01 120 chr3L:9821426-9821546 4.72e-01 120 chr3L:17054061-17054181 2.46e-02 22_[+1(9.84e-06)]_90 chrX:19579341-19579461 3.22e-01 120 chrX:20468406-20468526 8.83e-02 120 chr3R:10311552-10311672 4.50e-01 120 chrX:8973255-8973375 2.79e-01 120 chr2L:4332267-4332387 1.65e-01 120 chr3R:21587586-21587706 3.34e-02 106_[+1(9.84e-06)]_6 chr2L:6079400-6079520 4.31e-01 120 chr3R:25295440-25295560 1.27e-01 120 chrX:9586177-9586297 2.68e-02 57_[+3(2.90e-05)]_55 chr2L:5304474-5304594 2.85e-01 120 chr2L:2866028-2866148 8.82e-01 120 chr3R:8718568-8718688 4.97e-01 120 chrX:10757826-10757946 2.20e-01 120 chr2R:19191707-19191827 6.81e-02 120 chr3R:10096133-10096253 1.38e-01 120 chr3L:11180071-11180191 4.16e-02 120 chr2R:9607210-9607330 9.93e-01 120 chr3L:448145-448265 7.40e-02 120 chr3R:24116396-24116516 9.41e-02 50_[+2(1.91e-05)]_62 chr3R:22816539-22816659 5.62e-01 120 chr3L:16384448-16384568 1.61e-01 10_[+1(7.08e-05)]_102 chr2R:8447640-8447760 4.06e-01 120 chr3L:4664023-4664143 6.38e-01 120 chr2R:21206206-21206326 9.10e-01 120 chrX:20661842-20661962 9.07e-01 120 chrX:13936350-13936470 7.32e-01 120 chr2R:22109275-22109395 2.79e-01 120 chrX:15497535-15497655 4.98e-01 120 chr3L:781732-781852 9.80e-01 120 chr3R:10380102-10380222 6.22e-01 120 chr3L:6036343-6036463 1.47e-01 120 chr3R:28905245-28905365 1.21e-01 88_[+3(6.72e-05)]_24 chr3L:7158095-7158215 3.43e-01 120 chr2L:940643-940763 6.61e-01 120 chrX:10841967-10842087 3.24e-06 35_[+2(1.91e-05)]_3_[+4(5.96e-05)]_\ 38_[+1(6.04e-05)]_11_[+3(2.90e-05)]_1 chr2L:16522693-16522813 1.83e-01 45_[+4(5.96e-05)]_67 chr2R:22571931-22572051 2.46e-01 120 chrX:2212606-2212726 3.32e-02 97_[+2(1.91e-05)]_15 chr2L:9754938-9755058 9.47e-02 96_[+2(1.91e-05)]_16 chr3L:9095788-9095908 5.26e-01 120 chr3R:23519872-23519992 4.76e-01 120 chr3R:9948898-9949018 6.95e-02 101_[+3(1.13e-05)]_11 chrX:11426073-11426193 7.82e-01 120 chr2L:20674207-20674327 2.38e-01 120 chr2L:5302408-5302528 4.46e-01 120 chr3R:26464567-26464687 1.96e-02 120 chrX:2744789-2744909 1.79e-01 76_[+2(1.91e-05)]_36 chrX:115197-115317 7.64e-01 120 chr2L:7952043-7952163 3.50e-01 73_[+3(5.20e-05)]_39 chr3R:13782791-13782911 5.63e-01 120 chrX:14209437-14209557 5.98e-01 120 chrX:16893222-16893342 7.72e-01 120 chr3L:8673731-8673851 2.44e-01 120 chr2L:14221265-14221385 1.78e-01 120 chr2L:19433458-19433578 7.35e-01 120 chr2R:21701896-21702016 7.27e-02 106_[+4(5.96e-05)]_6 chrX:9401190-9401310 5.49e-01 120 chr3L:7856459-7856579 8.12e-01 120 chrX:11730167-11730287 2.56e-01 120 chr2R:6920592-6920712 7.35e-01 120 chr2R:21409759-21409879 4.81e-01 120 chrX:5516179-5516299 9.06e-01 120 chrX:6641699-6641819 5.19e-02 61_[+3(5.75e-06)]_51 chr3R:10075494-10075614 9.39e-01 120 chr2R:12642895-12643015 9.93e-01 120 chr2R:7153315-7153435 9.40e-01 120 chr3L:20241787-20241907 8.82e-01 120 chr3L:3772749-3772869 3.53e-01 120 chr2R:11338906-11339026 8.85e-01 120 chr2R:8671484-8671604 7.32e-01 120 chr2L:5302995-5303115 8.55e-01 120 chr2L:6872497-6872617 6.95e-01 120 chrX:9061349-9061469 1.48e-01 120 chr3R:16501178-16501298 7.35e-01 120 chr3R:10083263-10083383 9.99e-02 120 chr3L:8842537-8842657 7.47e-01 120 chr4:1029360-1029480 4.70e-01 120 chr2R:22911851-22911971 1.56e-01 120 chr3R:27926858-27926978 6.61e-03 108_[+5(7.89e-05)]_4 chr3R:9931266-9931386 3.53e-01 120 chr3L:10504757-10504877 9.81e-01 120 chr3R:21949087-21949207 8.98e-01 120 chr2R:23672672-23672792 5.58e-01 120 chr2R:22940742-22940862 3.30e-02 120 chr3L:17257360-17257480 4.80e-01 120 chrX:5954547-5954667 3.53e-01 120 chr2L:6447751-6447871 8.62e-02 120 chr3R:7947508-7947628 1.31e-01 87_[+3(1.91e-05)]_25 chr3L:8628424-8628544 4.13e-02 120 chrX:23010794-23010914 7.36e-01 120 chr2R:20306653-20306773 5.90e-01 120 chr3L:14204524-14204644 6.97e-01 120 chr2R:11452433-11452553 3.44e-02 33_[+3(5.75e-06)]_79 chr3L:8580872-8580992 6.50e-01 120 chr2R:6759368-6759488 9.02e-02 12_[+3(5.75e-06)]_100 chrX:11822187-11822307 9.27e-01 120 chrX:3447805-3447925 6.96e-01 120 chr3L:629091-629211 2.08e-01 120 chr2R:24687450-24687570 6.22e-02 5_[+1(1.97e-05)]_107 chr3R:23774007-23774127 9.01e-02 120 chr3L:22053491-22053611 6.96e-01 120 chr3L:13480545-13480665 1.03e-01 94_[+1(3.49e-05)]_18 chr2L:17589880-17590000 9.40e-01 120 chr3L:9059856-9059976 7.18e-01 120 chr3R:16008511-16008631 3.90e-01 120 chr3R:23993504-23993624 3.05e-02 90_[+5(7.89e-05)]_22 chr2R:12169071-12169191 6.30e-01 120 chr3R:7790608-7790728 5.40e-02 46_[+3(1.13e-05)]_66 chr2L:559467-559587 9.95e-01 120 chr2R:22657825-22657945 1.20e-03 9_[+5(9.43e-06)]_69_[+1(6.04e-05)]_\ 26 chr3R:19212911-19213031 8.96e-03 57_[+3(3.67e-05)]_55 chrX:21519357-21519477 2.29e-01 120 chr3L:1612303-1612423 7.98e-01 120 chr3R:11969453-11969573 6.76e-01 120 chrX:17423436-17423556 5.61e-01 120 chr2R:9078629-9078749 8.96e-01 120 chr2L:8942036-8942156 2.49e-01 120 chrX:21067455-21067575 2.62e-02 87_[+1(7.08e-05)]_25 chrX:1773584-1773704 8.84e-01 120 chr3L:9072132-9072252 3.66e-01 120 chr2L:6080507-6080627 7.80e-02 55_[+1(6.04e-05)]_57 chrX:2107892-2108012 4.85e-01 120 chr2L:2363022-2363142 1.93e-03 79_[+1(1.97e-05)]_33 chr2R:10799799-10799919 6.34e-01 120 chr3R:4281666-4281786 3.77e-01 120 chrX:6077374-6077494 7.66e-02 50_[+3(1.13e-05)]_62 chr3L:16166780-16166900 1.00e+00 120 chr3R:26261014-26261134 3.44e-02 120 chrX:17694219-17694339 5.22e-02 62_[+5(9.43e-06)]_50 chrX:2270189-2270309 8.33e-03 46_[+5(9.43e-06)]_36_[+1(8.27e-05)]_\ 22 chr2R:21604254-21604374 5.24e-01 120 chrX:1976354-1976474 4.45e-01 120 chr2L:7790792-7790912 8.19e-01 120 chrX:8230625-8230745 7.66e-01 120 chr2R:16343657-16343777 1.61e-01 112_[+4(5.96e-05)] chr3R:7505033-7505153 1.15e-01 120 chr3L:20386216-20386336 5.39e-01 120 chr2R:9554718-9554838 3.04e-01 120 chr2R:13438514-13438634 9.97e-01 120 chr3L:17401050-17401170 1.08e-01 99_[+1(8.27e-05)]_13 chr2R:12953542-12953662 4.86e-02 91_[+4(5.96e-05)]_21 chr3R:4706297-4706417 3.48e-02 91_[+1(9.84e-06)]_21 chr3R:30454379-30454499 7.04e-01 120 chrX:6090967-6091087 9.34e-02 49_[+3(5.20e-05)]_63 chrX:20170064-20170184 6.77e-01 120 chr3R:21195733-21195853 1.00e+00 120 chr3L:4068587-4068707 1.80e-01 120 chr2L:1970824-1970944 8.75e-03 35_[+5(7.89e-05)]_6_[+1(3.49e-05)]_\ 63 chr2L:16451060-16451180 6.16e-03 58_[+1(1.97e-05)]_54 chr3R:16356783-16356903 2.58e-01 94_[+1(9.49e-05)]_18 chr3R:17002905-17003025 8.66e-01 120 chr3L:3209098-3209218 4.55e-01 120 chr3R:10212895-10213015 9.80e-01 120 chr2R:16338117-16338237 3.57e-01 120 chr3R:15537181-15537301 5.27e-01 120 chr3R:7945149-7945269 4.68e-01 120 chr3L:22837809-22837929 4.13e-03 67_[+3(5.20e-05)]_45 chr3R:31250528-31250648 9.37e-01 120 chr3R:31194750-31194870 4.99e-02 120 chr3R:5694597-5694717 7.17e-01 120 chrX:18407437-18407557 9.41e-01 120 chr3R:18582349-18582469 9.09e-01 120 chr3R:19642620-19642740 3.30e-01 44_[+3(5.20e-05)]_68 chr2L:6967924-6968044 4.16e-01 120 chr2R:24747661-24747781 9.74e-01 120 chr3R:16158256-16158376 2.09e-01 120 chrX:21043258-21043378 4.84e-01 120 chr3R:10166456-10166576 9.46e-01 120 chr3L:5923836-5923956 3.42e-02 120 chrX:21028239-21028359 1.88e-01 120 chr3L:12799168-12799288 1.81e-01 120 chr2R:16230610-16230730 3.82e-02 57_[+4(5.96e-05)]_55 chr3L:14510140-14510260 1.67e-01 120 chr2L:8959096-8959216 2.26e-01 60_[+4(5.96e-05)]_52 chr2R:10554198-10554318 1.58e-02 93_[+3(5.61e-05)]_19 chr2R:6812203-6812323 9.88e-01 120 chr3L:19905639-19905759 5.98e-02 120 chr2L:13461061-13461181 9.05e-01 120 chr3L:10325831-10325951 1.48e-01 120 chr2L:20078993-20079113 1.86e-01 120 chr3L:2800486-2800606 5.93e-01 120 chr3L:5975891-5976011 7.83e-01 120 chrX:15080021-15080141 1.02e-01 120 chr3L:16002107-16002227 1.92e-03 14_[+1(4.85e-06)]_98 chr3R:21180485-21180605 6.82e-01 120 chr2L:1117029-1117149 6.82e-01 120 chrX:15511430-15511550 7.96e-01 120 chr3L:21971916-21972036 5.02e-01 120 chr3L:9096871-9096991 2.15e-02 120 chrX:1466946-1467066 1.67e-03 1_[+5(7.89e-05)]_111 chrX:3481134-3481254 9.85e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************