******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hr83.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:3442899-3443019 1.0000 120 chr3L:967989-968109 1.0000 120 chr2R:18168291-18168411 1.0000 120 chr3L:1022344-1022464 1.0000 120 chr3R:8067157-8067277 1.0000 120 chr3L:8129354-8129474 1.0000 120 chr3R:9625587-9625707 1.0000 120 chr3L:15150186-15150306 1.0000 120 chrX:7699972-7700092 1.0000 120 chr3L:6614123-6614243 1.0000 120 chr3R:21260932-21261052 1.0000 120 chrX:17121821-17121941 1.0000 120 chr3R:8748888-8749008 1.0000 120 chr2L:13467966-13468086 1.0000 120 chr3L:13924780-13924900 1.0000 120 chr2R:6503131-6503251 1.0000 120 chr3R:5454468-5454588 1.0000 120 chr2L:4937195-4937315 1.0000 120 chr3R:23179432-23179552 1.0000 120 chr2R:18619464-18619584 1.0000 120 chr3R:27502072-27502192 1.0000 120 chr2L:13807305-13807425 1.0000 120 chr2R:15784610-15784730 1.0000 120 chr2R:23522579-23522699 1.0000 120 chr3L:16914240-16914360 1.0000 120 chrX:1595825-1595945 1.0000 120 chr2R:24616149-24616269 1.0000 120 chr3R:8654111-8654231 1.0000 120 chr3R:15468506-15468626 1.0000 120 chr2L:5090098-5090218 1.0000 120 chr3L:137040-137160 1.0000 120 chr3L:4120465-4120585 1.0000 120 chr2R:16845511-16845631 1.0000 120 chr3R:31878423-31878543 1.0000 120 chr2L:16318395-16318515 1.0000 120 chr2L:5975269-5975389 1.0000 120 chr2L:9937037-9937157 1.0000 120 chr3L:12409423-12409543 1.0000 120 chr3R:6344021-6344141 1.0000 120 chr3R:14730738-14730858 1.0000 120 chr3R:20766208-20766328 1.0000 120 chr2L:2361739-2361859 1.0000 120 chr2R:17405128-17405248 1.0000 120 chr2L:20881840-20881960 1.0000 120 chrX:7228733-7228853 1.0000 120 chr2R:19303951-19304071 1.0000 120 chr3L:17650823-17650943 1.0000 120 chr2R:21382972-21383092 1.0000 120 chr2L:6524098-6524218 1.0000 120 chr3R:30454504-30454624 1.0000 120 chrX:15501978-15502098 1.0000 120 chr3L:15762626-15762746 1.0000 120 chr2L:9707660-9707780 1.0000 120 chr3R:5295576-5295696 1.0000 120 chr2L:9783250-9783370 1.0000 120 chr3L:21254567-21254687 1.0000 120 chr3R:4236632-4236752 1.0000 120 chr3L:15637767-15637887 1.0000 120 chr2R:8121348-8121468 1.0000 120 chr2R:10871422-10871542 1.0000 120 chr3L:17002244-17002364 1.0000 120 chr2L:1122296-1122416 1.0000 120 chr3R:17595219-17595339 1.0000 120 chr3R:22411958-22412078 1.0000 120 chr2R:22135199-22135319 1.0000 120 chr3R:29560130-29560250 1.0000 120 chr2L:18625131-18625251 1.0000 120 chr2L:5532182-5532302 1.0000 120 chr2L:18981638-18981758 1.0000 120 chr2L:16282193-16282313 1.0000 120 chr3R:5182405-5182525 1.0000 120 chr2R:8683525-8683645 1.0000 120 chr3R:22635885-22636005 1.0000 120 chr2R:23359263-23359383 1.0000 120 chr2L:6087817-6087937 1.0000 120 chr2L:9526671-9526791 1.0000 120 chr2L:11046201-11046321 1.0000 120 chr2L:480659-480779 1.0000 120 chr2L:13903938-13904058 1.0000 120 chr2R:18536186-18536306 1.0000 120 chrX:17183621-17183741 1.0000 120 chr2L:6464910-6465030 1.0000 120 chr3R:24301580-24301700 1.0000 120 chr3R:29866798-29866918 1.0000 120 chr2L:301044-301164 1.0000 120 chrX:1618129-1618249 1.0000 120 chr3R:24039297-24039417 1.0000 120 chr3L:12080499-12080619 1.0000 120 chr2L:18864241-18864361 1.0000 120 chr3R:4394267-4394387 1.0000 120 chrX:2221004-2221124 1.0000 120 chr3R:25280097-25280217 1.0000 120 chr3R:22057246-22057366 1.0000 120 chr3L:22826319-22826439 1.0000 120 chr2R:22740362-22740482 1.0000 120 chr2R:24294705-24294825 1.0000 120 chr2R:11644016-11644136 1.0000 120 chr2R:9148687-9148807 1.0000 120 chr2R:18304950-18305070 1.0000 120 chr3L:11272390-11272510 1.0000 120 chr2L:857199-857319 1.0000 120 chr2R:22324193-22324313 1.0000 120 chr2L:18678035-18678155 1.0000 120 chr2L:14743489-14743609 1.0000 120 chr2L:7954704-7954824 1.0000 120 chr3L:3209035-3209155 1.0000 120 chr2R:13464199-13464319 1.0000 120 chr3L:20788115-20788235 1.0000 120 chr2L:12013312-12013432 1.0000 120 chr3L:11252801-11252921 1.0000 120 chr3R:17404282-17404402 1.0000 120 chr2R:15951938-15952058 1.0000 120 chr2L:5253922-5254042 1.0000 120 chr2L:6453581-6453701 1.0000 120 chr2R:22525227-22525347 1.0000 120 chr3R:31882308-31882428 1.0000 120 chr2L:3165423-3165543 1.0000 120 chr3L:13923957-13924077 1.0000 120 chr2L:13808092-13808212 1.0000 120 chr3R:14474824-14474944 1.0000 120 chr3L:4367463-4367583 1.0000 120 chr3L:4357832-4357952 1.0000 120 chr2R:10773436-10773556 1.0000 120 chr3R:8726764-8726884 1.0000 120 chrX:21377486-21377606 1.0000 120 chr2L:9946259-9946379 1.0000 120 chr2L:5904705-5904825 1.0000 120 chr2L:20000621-20000741 1.0000 120 chrX:1828121-1828241 1.0000 120 chr2R:9078772-9078892 1.0000 120 chrX:7228236-7228356 1.0000 120 chr2R:11096418-11096538 1.0000 120 chr3L:16178549-16178669 1.0000 120 chr3L:21709933-21710053 1.0000 120 chr3L:8696969-8697089 1.0000 120 chr2L:19988251-19988371 1.0000 120 chr3L:2469764-2469884 1.0000 120 chr2L:2909612-2909732 1.0000 120 chr2L:19721422-19721542 1.0000 120 chr2L:21009107-21009227 1.0000 120 chr3L:3250605-3250725 1.0000 120 chr3L:14164426-14164546 1.0000 120 chrX:3935111-3935231 1.0000 120 chr3L:16145276-16145396 1.0000 120 chr2L:13845276-13845396 1.0000 120 chr3L:13499646-13499766 1.0000 120 chr2R:24631029-24631149 1.0000 120 chr3L:13315598-13315718 1.0000 120 chr3R:29095674-29095794 1.0000 120 chr2L:9687154-9687274 1.0000 120 chr3L:2254454-2254574 1.0000 120 chrX:2663566-2663686 1.0000 120 chr2L:12045210-12045330 1.0000 120 chr2R:6145467-6145587 1.0000 120 chr3R:17712984-17713104 1.0000 120 chr3R:29788026-29788146 1.0000 120 chr3L:16490287-16490407 1.0000 120 chr2L:14745001-14745121 1.0000 120 chr2L:8411586-8411706 1.0000 120 chr2L:8132402-8132522 1.0000 120 chr3R:16484185-16484305 1.0000 120 chr2L:7425787-7425907 1.0000 120 chr3R:9338938-9339058 1.0000 120 chrX:9576595-9576715 1.0000 120 chr3R:6353310-6353430 1.0000 120 chr2R:21549429-21549549 1.0000 120 chr3R:12441362-12441482 1.0000 120 chr3L:4543982-4544102 1.0000 120 chr2L:11023524-11023644 1.0000 120 chr3L:12791170-12791290 1.0000 120 chr2L:4900301-4900421 1.0000 120 chr2R:17108834-17108954 1.0000 120 chr2L:18664827-18664947 1.0000 120 chr2R:16214167-16214287 1.0000 120 chr2R:6143588-6143708 1.0000 120 chr3R:14744543-14744663 1.0000 120 chr2R:18291594-18291714 1.0000 120 chr2R:8240321-8240441 1.0000 120 chr3R:17116330-17116450 1.0000 120 chr3R:9601971-9602091 1.0000 120 chr2R:16017693-16017813 1.0000 120 chrX:6733332-6733452 1.0000 120 chr2L:7493610-7493730 1.0000 120 chr2R:21072712-21072832 1.0000 120 chr2R:16209441-16209561 1.0000 120 chr3L:11777622-11777742 1.0000 120 chr3L:12417525-12417645 1.0000 120 chr3R:29716146-29716266 1.0000 120 chrX:11601454-11601574 1.0000 120 chr3R:10076814-10076934 1.0000 120 chr3R:31944982-31945102 1.0000 120 chr2L:6086836-6086956 1.0000 120 chr3R:26098603-26098723 1.0000 120 chr2L:20760257-20760377 1.0000 120 chrX:15568501-15568621 1.0000 120 chr3R:5671405-5671525 1.0000 120 chr2L:128522-128642 1.0000 120 chr3L:19504887-19505007 1.0000 120 chr2R:10044021-10044141 1.0000 120 chr2R:21236786-21236906 1.0000 120 chr2R:11646070-11646190 1.0000 120 chr3R:31225442-31225562 1.0000 120 chr2L:1989709-1989829 1.0000 120 chr2L:3781034-3781154 1.0000 120 chrX:7102273-7102393 1.0000 120 chrX:20661789-20661909 1.0000 120 chrX:12716155-12716275 1.0000 120 chrX:4936655-4936775 1.0000 120 chr2L:15643930-15644050 1.0000 120 chrX:6037835-6037955 1.0000 120 chr2R:11575669-11575789 1.0000 120 chr3L:8177947-8178067 1.0000 120 chr2R:24981162-24981282 1.0000 120 chr2R:23716155-23716275 1.0000 120 chr3L:22738374-22738494 1.0000 120 chr3L:3134191-3134311 1.0000 120 chr3L:16670323-16670443 1.0000 120 chr2R:21708399-21708519 1.0000 120 chr2L:3338623-3338743 1.0000 120 chrX:7227418-7227538 1.0000 120 chrX:14805894-14806014 1.0000 120 chr2L:4591966-4592086 1.0000 120 chr3R:17394452-17394572 1.0000 120 chr2R:24591135-24591255 1.0000 120 chrX:10728192-10728312 1.0000 120 chr3L:3251072-3251192 1.0000 120 chr4:695971-696091 1.0000 120 chr2R:14024787-14024907 1.0000 120 chr2L:18561807-18561927 1.0000 120 chr3L:4220813-4220933 1.0000 120 chr2R:11648532-11648652 1.0000 120 chr3L:8985257-8985377 1.0000 120 chr3R:18398623-18398743 1.0000 120 chr2R:23983023-23983143 1.0000 120 chrX:15071281-15071401 1.0000 120 chr3R:17059111-17059231 1.0000 120 chr2L:4119538-4119658 1.0000 120 chrX:6546059-6546179 1.0000 120 chr3L:14978601-14978721 1.0000 120 chr2R:7282533-7282653 1.0000 120 chr3L:17978085-17978205 1.0000 120 chr2L:16255766-16255886 1.0000 120 chr3R:14653427-14653547 1.0000 120 chr2R:24987009-24987129 1.0000 120 chr2R:11106734-11106854 1.0000 120 chr2R:18346151-18346271 1.0000 120 chr2R:7512688-7512808 1.0000 120 chr2L:3479745-3479865 1.0000 120 chr2R:22896190-22896310 1.0000 120 chrX:18647555-18647675 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Hr83/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hr83.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.271 C 0.229 G 0.231 T 0.269 Background letter frequencies (from file dataset with add-one prior applied): A 0.271 C 0.229 G 0.231 T 0.269 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTRTTTRC MEME-1 width = 8 sites = 138 llr = 952 E-value = 5.2e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTRTTTRC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:4:::41 pos.-specific C 1::::::7 probability G 1:6:::5: matrix T 6a:aaa12 bits 2.1 1.9 * * 1.7 * *** 1.5 * *** Relative 1.3 * *** Entropy 1.1 ***** (10.0 bits) 0.9 ***** * 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TTGTTTGC consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRTTTRC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:4543982-4544102 31 1.72e-05 GCTTGACTGT TTGTTTGC CTATCAGCTG chr3R:29788026-29788146 43 1.72e-05 ATAAAATCGA TTGTTTGC TGTCAATAAG chr2L:19988251-19988371 22 1.72e-05 AACTGCTCTC TTGTTTGC AACTTGTGTT chr2R:11096418-11096538 31 1.72e-05 CGGAATGGTG TTGTTTGC TTTTGCCACT chr2L:6464910-6465030 49 1.72e-05 TTGCCGAATC TTGTTTGC TCAGATTGTT chr2R:8683525-8683645 47 1.72e-05 CGTGCCGTGT TTGTTTGC CCCCGTGCCA chr3R:22411958-22412078 41 1.72e-05 AAGAAACAAT TTGTTTGC TTTCGACTGC chr3R:17595219-17595339 21 1.72e-05 CCAGTCAAGG TTGTTTGC GTACGTTCTG chr2R:18619464-18619584 67 1.72e-05 TGGCTTGTTG TTGTTTGC TCAGTTGGCC chr3R:5454468-5454588 53 1.72e-05 atttgcttgt ttgtttgc ttgcccgttt chr2L:15643930-15644050 106 3.74e-05 GCTGGCCAAA TTGTTTAC CTTGAGA chr2R:8240321-8240441 42 3.74e-05 ATTAAATTCG TTGTTTAC TCAACTGCAG chr3L:2254454-2254574 61 3.74e-05 ACATTTGCGC TTGTTTAC CCAACATTAA chr2L:2909612-2909732 51 3.74e-05 CTTGCCTTTG TTGTTTAC GGCCAACTGT chr2L:6453581-6453701 85 3.74e-05 CCTGAAAATG TTGTTTAC TTGTGTTTTC chr2R:22324193-22324313 13 3.74e-05 CCAAAGCTCT TTGTTTAC CACTCGGCGA chr2R:11644016-11644136 50 3.74e-05 TGTCGTTTAT TTGTTTAC AACCTTTACT chr2R:23359263-23359383 46 3.74e-05 CCACTTCCAT TTGTTTAC GAACAGCGCT chr3L:12409423-12409543 48 3.74e-05 GTGATCTTAA TTGTTTAC AGGCGGTGGA chr2R:24616149-24616269 93 3.74e-05 GGGCGGGCAA TTGTTTAC TCTGCGGCTG chrX:7699972-7700092 59 3.74e-05 AGAGCAAAAG TTGTTTAC CCTTTTGTGG chr3L:1022344-1022464 88 3.74e-05 AGCCAGGTCT TTGTTTAC ACCATTTTTC chr3L:19504887-19505007 5 5.76e-05 CTAA TTATTTGC CTTGTCTCAC chr2R:21549429-21549549 6 5.76e-05 TCGAG TTATTTGC TCTGGCTTAC chr2L:857199-857319 7 5.76e-05 TCATAT TTATTTGC TTTCCGTTTC chr3L:15637767-15637887 47 5.76e-05 ATAGTCAGCG TTATTTGC GCTTTACTCG chrX:7102273-7102393 1 9.86e-05 . TTATTTAC TTTCCGCGGA chr2L:6086836-6086956 97 9.86e-05 AGCAGCAAAA ATGTTTGC CAAGTTCAAG chr2R:16209441-16209561 1 9.86e-05 . TTATTTAC CACCCAGTGT chr2L:9687154-9687274 62 9.86e-05 GTTATAAGAG TTATTTAC ATATGCCGAA chr3L:4357832-4357952 41 9.86e-05 TGCATGAAAC TTATTTAC ACAGTGCTCG chr2L:13808092-13808212 8 9.86e-05 TGTGTCA ATGTTTGC GCCACCAGTA chr3L:13923957-13924077 73 9.86e-05 AATCGGTGGC TTATTTAC TCGACGACCA chr3R:25280097-25280217 63 9.86e-05 CAAGCCTGCG ATGTTTGC TTTGGGGATT chr3R:8748888-8749008 29 9.86e-05 GTTCATTTGC ATGTTTGC TTAATTTGTT chr3R:18398623-18398743 92 1.13e-04 CTTCTGGCAG GTGTTTGC ACAATGGGTC chr2R:22135199-22135319 94 1.13e-04 GTGTGTGCGT GTGTTTGC CTCCGTTTTC chr3R:20766208-20766328 42 1.13e-04 AATTGCCGGC GTGTTTGC GAAGATAATC chrX:17121821-17121941 42 1.13e-04 TTTACCAGCT GTGTTTGC TCTCTATAAA chr3L:4220813-4220933 11 1.54e-04 ACTTTCATTT TTGTTTGT TATACAATAT chr2R:24981162-24981282 45 1.54e-04 TCGGGCCCAA ATGTTTAC ACAGACCGTA chrX:11601454-11601574 27 1.54e-04 TTATAAATTA TTGTTTGT TCGCTTTGAG chr2R:6145467-6145587 9 1.54e-04 TCGCCTCT TTGTTTGT GTGACTGTGT chr3L:16145276-16145396 62 1.54e-04 TTAGGTTAAA ATGTTTAC TCGAGCATTG chr2L:19721422-19721542 2 1.54e-04 A ATGTTTAC TCAGCGCAAA chr3L:16178549-16178669 2 1.54e-04 G TTGTTTGT TAGTATGTGT chrX:1618129-1618249 5 1.54e-04 GCGT TTGTTTGT TATTTTCGTA chr2L:2361739-2361859 30 1.54e-04 TGTGGCGCCT TTGTTTGT TTAATGACGC chr2L:13467966-13468086 30 1.54e-04 GCTCTGGTTG TTGTTTGT TGCCATTCGA chr3R:31882308-31882428 43 1.71e-04 TCGCTTTCCA GTGTTTAC TCAGCTATTC chr3L:3209035-3209155 38 1.71e-04 CTGTTCTTCG GTGTTTAC ACACGGCAAT chr3R:22057246-22057366 78 1.71e-04 ATTTGTTCAA GTGTTTAC CCATTTGCTG chr3L:2469764-2469884 37 1.86e-04 GTTGTATACC CTGTTTGC TTAGCTGCTT chr3L:4120465-4120585 48 1.86e-04 TTTTGTTTTG CTGTTTGC TTACGCCACA chr3R:21260932-21261052 82 1.86e-04 TTAAACTTGT CTGTTTGC TGGATATATT chr2L:4119538-4119658 112 2.30e-04 TGATTGCGAG TTGTTTGA G chrX:4936655-4936775 72 2.30e-04 TTGATATTCT TTGTTTGA ACTGCGACTG chr3R:17116330-17116450 10 2.30e-04 GGTGCTCTC TTGTTTGA AGGTATATAA chr2R:24631029-24631149 23 2.30e-04 AGAGCGCACA TTGTTTAT TTCAGTGGCG chrX:1828121-1828241 15 2.30e-04 GCGGTGGGTG TTGTTTGA TGGGGGTGTG chr2L:20000621-20000741 29 2.30e-04 GAGCCGAATT TTGTTTAT TTTCGGATGT chr2L:3165423-3165543 4 2.30e-04 CTT TTGTTTGA CAACAAAGAT chr2L:18864241-18864361 67 2.30e-04 AAACAGTCAG TTGTTTGA TGGGCAAATA chr2L:480659-480779 113 2.30e-04 TACATTTATT TTGTTTGA chr2L:18625131-18625251 38 2.30e-04 TCTGTTTCTG TTGTTTAT TTATAGTTTA chr2L:4937195-4937315 75 2.30e-04 AAAAGTTACC TTGTTTAT ACAACTTTTG chr2L:7493610-7493730 21 2.50e-04 CACACATTTC ATATTTGC TCTGATATCG chrX:7228236-7228356 57 2.50e-04 GGCCGCGACC ATATTTGC ATATGGCTCA chr2L:11046201-11046321 65 2.50e-04 TAACAGCACA ATATTTGC ATAATAGCAG chrX:1595825-1595945 99 2.50e-04 CGCACATTCA ATATTTGC ACATGCCACA chr2R:15784610-15784730 48 2.50e-04 TGGTCGGTTT ATATTTGC ACAAAACGGG chr2L:3479745-3479865 80 3.05e-04 ACTGTTTGAA CTGTTTAC GAAGAAATTT chrX:15568501-15568621 14 3.05e-04 ACATATGTAT GTATTTGC ACCTCTACCC chr3R:12441362-12441482 38 3.05e-04 CTTAATCGAT TTGTTTTC GTTTTGGCAA chr3L:22826319-22826439 72 3.05e-04 AGCGCTCTTT TTGTTTTC TCTATAAACA chr3R:30454504-30454624 47 3.05e-04 TCGAGTTTCT CTGTTTAC AATGTAAACA chr3L:17650823-17650943 82 3.05e-04 ATTGGTTTTT CTGTTTAC ACTCTCACTT chrX:10728192-10728312 57 3.29e-04 AGCCGCATAT TTGTTTAA TTCCGTTTAC chr3R:27502072-27502192 52 3.29e-04 TACATTCTCG TTGTTTAA ATACACCAGA chr2R:18168291-18168411 17 3.29e-04 AGTAATTAAC TTGTTTAA CTACAATTGT chrX:7227418-7227538 74 3.76e-04 GATCGCAGCT ATATTTAC ATATGTCCGT chr3L:16670323-16670443 67 3.76e-04 CACTTGGGTG TTATTTGT CTAATTCGAC chr3L:12417525-12417645 94 3.76e-04 CATACTATCG ATATTTAC CCATCTCAAA chr2R:6143588-6143708 79 3.76e-04 CACATGCAGC TTATTTGT ATGTGTTATT chrX:9576595-9576715 40 3.76e-04 TGTATGCCCC ATATTTAC ATTTGCCAAA chr2L:5904705-5904825 47 3.76e-04 TACCCAATTC ATATTTAC TTGAAAAATT chr3L:11272390-11272510 59 3.76e-04 ATCGGTGCAA ATATTTAC CCAGGCAACT chr2R:19303951-19304071 64 3.76e-04 CGTTATTTAA ATATTTAC ACAAGCTTCG chr3R:31878423-31878543 111 3.76e-04 GACTGCGAAA ATATTTAC AC chr3L:137040-137160 45 3.76e-04 CACCTTGTGT TTATTTGT GCTAAGCCAA chrX:21377486-21377606 55 3.97e-04 TAACTCGTGC GTATTTAC TCAGCGAGAC chr2L:13807305-13807425 73 3.97e-04 TGATCTTAAA GTATTTAC AGCCAAAGTC chr3R:4236632-4236752 44 4.14e-04 GGCATATACG CTATTTGC GACTCACAGA chr3R:16484185-16484305 94 4.86e-04 TAAATTAATT TTATTTAT GTGGTTAACA chr2L:8132402-8132522 27 4.86e-04 TGCAGTCCGC TTATTTGA CCAGGTTTCG chr2L:7954704-7954824 105 4.86e-04 AGTGCGCATT TTATTTAT TCAGCCAT chr3R:22635885-22636005 8 4.86e-04 GGTTATA TTATTTAT ATTTTCATTT chr3L:6614123-6614243 9 4.86e-04 ACGATAAT TTATTTAT TGCACTATCA chrX:6733332-6733452 109 5.03e-04 AAGTTCAGTG GTGTTTGT CCGC chr3L:8985257-8985377 6 5.47e-04 GCCCA TTATTTTC GCAGTCGACG chrX:14805894-14806014 41 5.47e-04 CTCAACGCCT CTATTTAC ACGTTCCCTG chr3R:31225442-31225562 35 5.47e-04 TGCACTCTCG CTATTTAC TTATTTCGGC chr2R:11646070-11646190 90 5.47e-04 CTCTTTCTCT TTATTTTC ACAGCTGGCG chr3R:14744543-14744663 99 5.47e-04 AAATATCCAT TTATTTTC CAGACCCACT chr2L:4900301-4900421 10 5.47e-04 CGAGTGGCG TTATTTTC GTATTTTTTT chr3R:17404282-17404402 94 6.20e-04 TCTTATTTTT TTATTTAA AATTTTTGCA chr3R:23179432-23179552 41 6.20e-04 CCCTTGAAGG TTATTTAA ACAGCTGAAC chr2R:23716155-23716275 105 6.72e-04 gcttgtgtgt gtgtttat gtgtgttg chr3L:12791170-12791290 29 6.72e-04 GGAATGGGAA TTGTTGGC GAATTTTTGC chrX:2663566-2663686 82 6.72e-04 TTCAATACTC GTGTTTGA TCAGCTGTGA chr3R:8654111-8654231 6 6.72e-04 TCGTC GTGTTTAT ATGTTGACAG chr2L:18981638-18981758 26 7.10e-04 GATCGAATGG ATGTTTTC TGTTTCGAAA chrX:7228733-7228853 55 7.10e-04 ATATCGCGCT CTGTTTGT TATAGTTTCA chr2R:16845511-16845631 101 7.10e-04 TCGGTCCCAG ATGTTTTC GGCTGGCTTG chr2R:10773436-10773556 33 7.66e-04 TGCTCCTCCA TTGTGTGC AGCAATTAAT chr2R:9148687-9148807 31 7.66e-04 GCGCGCACAG ATGTTTAA CTCAGTTCCC chrX:17183621-17183741 63 7.66e-04 ACATATGCAT GTGTTTTC AGCTGGAGAT chr2R:8121348-8121468 31 7.66e-04 AAAATACTCT TTGTGTGC TTAGCTTTAT chr2L:20881840-20881960 30 7.66e-04 CCACTTATTT TTGTGTGC CTTGTAGAGG chr2L:5090098-5090218 102 7.66e-04 tgctgtatgt gtgtTTTC CACACGATTT chr3R:8067157-8067277 64 7.66e-04 ATTTGCTCAG GTGTTTTC AACTGCAACT chr2L:21009107-21009227 106 8.27e-04 ATGAAACAAG ATATTTGT ACCAGGA chr3L:12080499-12080619 45 8.27e-04 ATCGAGATCA TTGTTGAC ATTCCGTGCA chr2R:18536186-18536306 27 8.27e-04 CAATGTAGCT ATATTTGT GGCCAATGCA chr3L:21254567-21254687 77 8.27e-04 ACAACGACTC TTGTTGAC TTTCATTGAC chr2R:21382972-21383092 91 8.27e-04 TTTTGTTCTC TTGTTGAC CAATCTCTGT chr2R:17405128-17405248 52 8.27e-04 ACAACTGCAA GTGTTTAA CTATGGGGAA chr2L:16318395-16318515 42 8.27e-04 CGGACTCGCC TTGTTGAC TTTCTTTCGA chr3L:15150186-15150306 56 8.27e-04 ATCTGGCTCA ATATTTGT TCTGGGCAAA chr2L:9946259-9946379 74 9.09e-04 AAAGCAGCAG CTGTTTGA TTCAAGATCG chr2L:9937037-9937157 86 9.09e-04 GTGGAGACGA CTGTTTGA ACTGCTGTTT chr2R:6503131-6503251 49 9.09e-04 GGCTTTGTCA CTGTTTGA TCAGCTGAAA chr4:695971-696091 19 9.95e-04 TAGAGAACCA ATATTTGA AAACCCGCAG chr3R:17394452-17394572 70 1.10e-03 ATATATATAT GTATTTAT GCCTACCTGG chr2L:13845276-13845396 32 1.10e-03 AGTACCTACG GTATTTAT ACTACTCAGT chr3L:14978601-14978721 95 1.21e-03 CCAGTGGAGC TTATGTGC ATTCCGAGTG chrX:12716155-12716275 36 1.27e-03 AACATGTTCG ATGTTGGC GGTCAGCCAT chr3L:13924780-13924900 5 1.39e-03 ATCT TTATGTAC ACACACTTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRTTTRC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:4543982-4544102 1.7e-05 30_[+1]_82 chr3R:29788026-29788146 1.7e-05 42_[+1]_70 chr2L:19988251-19988371 1.7e-05 21_[+1]_91 chr2R:11096418-11096538 1.7e-05 30_[+1]_82 chr2L:6464910-6465030 1.7e-05 48_[+1]_64 chr2R:8683525-8683645 1.7e-05 46_[+1]_66 chr3R:22411958-22412078 1.7e-05 40_[+1]_72 chr3R:17595219-17595339 1.7e-05 20_[+1]_92 chr2R:18619464-18619584 1.7e-05 66_[+1]_46 chr3R:5454468-5454588 1.7e-05 52_[+1]_60 chr2L:15643930-15644050 3.7e-05 105_[+1]_7 chr2R:8240321-8240441 3.7e-05 41_[+1]_71 chr3L:2254454-2254574 3.7e-05 60_[+1]_52 chr2L:2909612-2909732 3.7e-05 50_[+1]_62 chr2L:6453581-6453701 3.7e-05 84_[+1]_28 chr2R:22324193-22324313 3.7e-05 12_[+1]_100 chr2R:11644016-11644136 3.7e-05 49_[+1]_63 chr2R:23359263-23359383 3.7e-05 45_[+1]_67 chr3L:12409423-12409543 3.7e-05 47_[+1]_65 chr2R:24616149-24616269 3.7e-05 92_[+1]_20 chrX:7699972-7700092 3.7e-05 58_[+1]_54 chr3L:1022344-1022464 3.7e-05 87_[+1]_25 chr3L:19504887-19505007 5.8e-05 4_[+1]_108 chr2R:21549429-21549549 5.8e-05 5_[+1]_107 chr2L:857199-857319 5.8e-05 6_[+1]_106 chr3L:15637767-15637887 5.8e-05 46_[+1]_66 chrX:7102273-7102393 9.9e-05 [+1]_112 chr2L:6086836-6086956 9.9e-05 96_[+1]_16 chr2R:16209441-16209561 9.9e-05 [+1]_112 chr2L:9687154-9687274 9.9e-05 61_[+1]_51 chr3L:4357832-4357952 9.9e-05 40_[+1]_72 chr2L:13808092-13808212 9.9e-05 7_[+1]_105 chr3L:13923957-13924077 9.9e-05 72_[+1]_40 chr3R:25280097-25280217 9.9e-05 62_[+1]_50 chr3R:8748888-8749008 9.9e-05 28_[+1]_84 chr3R:18398623-18398743 0.00011 91_[+1]_21 chr2R:22135199-22135319 0.00011 93_[+1]_19 chr3R:20766208-20766328 0.00011 41_[+1]_71 chrX:17121821-17121941 0.00011 41_[+1]_71 chr3L:4220813-4220933 0.00015 10_[+1]_102 chr2R:24981162-24981282 0.00015 44_[+1]_68 chrX:11601454-11601574 0.00015 26_[+1]_86 chr2R:6145467-6145587 0.00015 8_[+1]_104 chr3L:16145276-16145396 0.00015 61_[+1]_51 chr2L:19721422-19721542 0.00015 1_[+1]_111 chr3L:16178549-16178669 0.00015 1_[+1]_111 chrX:1618129-1618249 0.00015 4_[+1]_108 chr2L:2361739-2361859 0.00015 29_[+1]_83 chr2L:13467966-13468086 0.00015 29_[+1]_83 chr3R:31882308-31882428 0.00017 42_[+1]_70 chr3L:3209035-3209155 0.00017 37_[+1]_75 chr3R:22057246-22057366 0.00017 77_[+1]_35 chr3L:2469764-2469884 0.00019 36_[+1]_76 chr3L:4120465-4120585 0.00019 47_[+1]_65 chr3R:21260932-21261052 0.00019 81_[+1]_31 chr2L:4119538-4119658 0.00023 111_[+1]_1 chrX:4936655-4936775 0.00023 71_[+1]_41 chr3R:17116330-17116450 0.00023 9_[+1]_103 chr2R:24631029-24631149 0.00023 22_[+1]_90 chrX:1828121-1828241 0.00023 14_[+1]_98 chr2L:20000621-20000741 0.00023 28_[+1]_84 chr2L:3165423-3165543 0.00023 3_[+1]_109 chr2L:18864241-18864361 0.00023 66_[+1]_46 chr2L:480659-480779 0.00023 112_[+1] chr2L:18625131-18625251 0.00023 37_[+1]_75 chr2L:4937195-4937315 0.00023 74_[+1]_38 chr2L:7493610-7493730 0.00025 20_[+1]_92 chrX:7228236-7228356 0.00025 56_[+1]_56 chr2L:11046201-11046321 0.00025 64_[+1]_48 chrX:1595825-1595945 0.00025 98_[+1]_14 chr2R:15784610-15784730 0.00025 47_[+1]_65 chr2L:3479745-3479865 0.0003 79_[+1]_33 chrX:15568501-15568621 0.0003 13_[+1]_99 chr3R:12441362-12441482 0.0003 37_[+1]_75 chr3L:22826319-22826439 0.0003 71_[+1]_41 chr3R:30454504-30454624 0.0003 46_[+1]_66 chr3L:17650823-17650943 0.0003 81_[+1]_31 chrX:10728192-10728312 0.00033 56_[+1]_56 chr3R:27502072-27502192 0.00033 51_[+1]_61 chr2R:18168291-18168411 0.00033 16_[+1]_96 chrX:7227418-7227538 0.00038 73_[+1]_39 chr3L:16670323-16670443 0.00038 66_[+1]_46 chr3L:12417525-12417645 0.00038 93_[+1]_19 chr2R:6143588-6143708 0.00038 78_[+1]_34 chrX:9576595-9576715 0.00038 39_[+1]_73 chr2L:5904705-5904825 0.00038 46_[+1]_66 chr3L:11272390-11272510 0.00038 58_[+1]_54 chr2R:19303951-19304071 0.00038 63_[+1]_49 chr3R:31878423-31878543 0.00038 110_[+1]_2 chr3L:137040-137160 0.00038 44_[+1]_68 chrX:21377486-21377606 0.0004 54_[+1]_58 chr2L:13807305-13807425 0.0004 72_[+1]_40 chr3R:4236632-4236752 0.00041 43_[+1]_69 chr3R:16484185-16484305 0.00049 93_[+1]_19 chr2L:8132402-8132522 0.00049 26_[+1]_86 chr2L:7954704-7954824 0.00049 104_[+1]_8 chr3R:22635885-22636005 0.00049 7_[+1]_105 chr3L:6614123-6614243 0.00049 8_[+1]_104 chrX:6733332-6733452 0.0005 108_[+1]_4 chr3L:8985257-8985377 0.00055 5_[+1]_107 chrX:14805894-14806014 0.00055 40_[+1]_72 chr3R:31225442-31225562 0.00055 34_[+1]_78 chr2R:11646070-11646190 0.00055 89_[+1]_23 chr3R:14744543-14744663 0.00055 98_[+1]_14 chr2L:4900301-4900421 0.00055 9_[+1]_103 chr3R:17404282-17404402 0.00062 93_[+1]_19 chr3R:23179432-23179552 0.00062 40_[+1]_72 chr2R:23716155-23716275 0.00067 104_[+1]_8 chr3L:12791170-12791290 0.00067 28_[+1]_84 chrX:2663566-2663686 0.00067 81_[+1]_31 chr3R:8654111-8654231 0.00067 5_[+1]_107 chr2L:18981638-18981758 0.00071 25_[+1]_87 chrX:7228733-7228853 0.00071 54_[+1]_58 chr2R:16845511-16845631 0.00071 100_[+1]_12 chr2R:10773436-10773556 0.00077 32_[+1]_80 chr2R:9148687-9148807 0.00077 30_[+1]_82 chrX:17183621-17183741 0.00077 62_[+1]_50 chr2R:8121348-8121468 0.00077 30_[+1]_82 chr2L:20881840-20881960 0.00077 29_[+1]_83 chr2L:5090098-5090218 0.00077 101_[+1]_11 chr3R:8067157-8067277 0.00077 63_[+1]_49 chr2L:21009107-21009227 0.00083 105_[+1]_7 chr3L:12080499-12080619 0.00083 44_[+1]_68 chr2R:18536186-18536306 0.00083 26_[+1]_86 chr3L:21254567-21254687 0.00083 76_[+1]_36 chr2R:21382972-21383092 0.00083 90_[+1]_22 chr2R:17405128-17405248 0.00083 51_[+1]_61 chr2L:16318395-16318515 0.00083 41_[+1]_71 chr3L:15150186-15150306 0.00083 55_[+1]_57 chr2L:9946259-9946379 0.00091 73_[+1]_39 chr2L:9937037-9937157 0.00091 85_[+1]_27 chr2R:6503131-6503251 0.00091 48_[+1]_64 chr4:695971-696091 0.001 18_[+1]_94 chr3R:17394452-17394572 0.0011 69_[+1]_43 chr2L:13845276-13845396 0.0011 31_[+1]_81 chr3L:14978601-14978721 0.0012 94_[+1]_18 chrX:12716155-12716275 0.0013 35_[+1]_77 chr3L:13924780-13924900 0.0014 4_[+1]_108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRTTTRC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTRTTTRC width=8 seqs=138 chr3L:4543982-4544102 ( 31) TTGTTTGC 1 chr3R:29788026-29788146 ( 43) TTGTTTGC 1 chr2L:19988251-19988371 ( 22) TTGTTTGC 1 chr2R:11096418-11096538 ( 31) TTGTTTGC 1 chr2L:6464910-6465030 ( 49) TTGTTTGC 1 chr2R:8683525-8683645 ( 47) TTGTTTGC 1 chr3R:22411958-22412078 ( 41) TTGTTTGC 1 chr3R:17595219-17595339 ( 21) TTGTTTGC 1 chr2R:18619464-18619584 ( 67) TTGTTTGC 1 chr3R:5454468-5454588 ( 53) TTGTTTGC 1 chr2L:15643930-15644050 ( 106) TTGTTTAC 1 chr2R:8240321-8240441 ( 42) TTGTTTAC 1 chr3L:2254454-2254574 ( 61) TTGTTTAC 1 chr2L:2909612-2909732 ( 51) TTGTTTAC 1 chr2L:6453581-6453701 ( 85) TTGTTTAC 1 chr2R:22324193-22324313 ( 13) TTGTTTAC 1 chr2R:11644016-11644136 ( 50) TTGTTTAC 1 chr2R:23359263-23359383 ( 46) TTGTTTAC 1 chr3L:12409423-12409543 ( 48) TTGTTTAC 1 chr2R:24616149-24616269 ( 93) TTGTTTAC 1 chrX:7699972-7700092 ( 59) TTGTTTAC 1 chr3L:1022344-1022464 ( 88) TTGTTTAC 1 chr3L:19504887-19505007 ( 5) TTATTTGC 1 chr2R:21549429-21549549 ( 6) TTATTTGC 1 chr2L:857199-857319 ( 7) TTATTTGC 1 chr3L:15637767-15637887 ( 47) TTATTTGC 1 chrX:7102273-7102393 ( 1) TTATTTAC 1 chr2L:6086836-6086956 ( 97) ATGTTTGC 1 chr2R:16209441-16209561 ( 1) TTATTTAC 1 chr2L:9687154-9687274 ( 62) TTATTTAC 1 chr3L:4357832-4357952 ( 41) TTATTTAC 1 chr2L:13808092-13808212 ( 8) ATGTTTGC 1 chr3L:13923957-13924077 ( 73) TTATTTAC 1 chr3R:25280097-25280217 ( 63) ATGTTTGC 1 chr3R:8748888-8749008 ( 29) ATGTTTGC 1 chr3R:18398623-18398743 ( 92) GTGTTTGC 1 chr2R:22135199-22135319 ( 94) GTGTTTGC 1 chr3R:20766208-20766328 ( 42) GTGTTTGC 1 chrX:17121821-17121941 ( 42) GTGTTTGC 1 chr3L:4220813-4220933 ( 11) TTGTTTGT 1 chr2R:24981162-24981282 ( 45) ATGTTTAC 1 chrX:11601454-11601574 ( 27) TTGTTTGT 1 chr2R:6145467-6145587 ( 9) TTGTTTGT 1 chr3L:16145276-16145396 ( 62) ATGTTTAC 1 chr2L:19721422-19721542 ( 2) ATGTTTAC 1 chr3L:16178549-16178669 ( 2) TTGTTTGT 1 chrX:1618129-1618249 ( 5) TTGTTTGT 1 chr2L:2361739-2361859 ( 30) TTGTTTGT 1 chr2L:13467966-13468086 ( 30) TTGTTTGT 1 chr3R:31882308-31882428 ( 43) GTGTTTAC 1 chr3L:3209035-3209155 ( 38) GTGTTTAC 1 chr3R:22057246-22057366 ( 78) GTGTTTAC 1 chr3L:2469764-2469884 ( 37) CTGTTTGC 1 chr3L:4120465-4120585 ( 48) CTGTTTGC 1 chr3R:21260932-21261052 ( 82) CTGTTTGC 1 chr2L:4119538-4119658 ( 112) TTGTTTGA 1 chrX:4936655-4936775 ( 72) TTGTTTGA 1 chr3R:17116330-17116450 ( 10) TTGTTTGA 1 chr2R:24631029-24631149 ( 23) TTGTTTAT 1 chrX:1828121-1828241 ( 15) TTGTTTGA 1 chr2L:20000621-20000741 ( 29) TTGTTTAT 1 chr2L:3165423-3165543 ( 4) TTGTTTGA 1 chr2L:18864241-18864361 ( 67) TTGTTTGA 1 chr2L:480659-480779 ( 113) TTGTTTGA 1 chr2L:18625131-18625251 ( 38) TTGTTTAT 1 chr2L:4937195-4937315 ( 75) TTGTTTAT 1 chr2L:7493610-7493730 ( 21) ATATTTGC 1 chrX:7228236-7228356 ( 57) ATATTTGC 1 chr2L:11046201-11046321 ( 65) ATATTTGC 1 chrX:1595825-1595945 ( 99) ATATTTGC 1 chr2R:15784610-15784730 ( 48) ATATTTGC 1 chr2L:3479745-3479865 ( 80) CTGTTTAC 1 chrX:15568501-15568621 ( 14) GTATTTGC 1 chr3R:12441362-12441482 ( 38) TTGTTTTC 1 chr3L:22826319-22826439 ( 72) TTGTTTTC 1 chr3R:30454504-30454624 ( 47) CTGTTTAC 1 chr3L:17650823-17650943 ( 82) CTGTTTAC 1 chrX:10728192-10728312 ( 57) TTGTTTAA 1 chr3R:27502072-27502192 ( 52) TTGTTTAA 1 chr2R:18168291-18168411 ( 17) TTGTTTAA 1 chrX:7227418-7227538 ( 74) ATATTTAC 1 chr3L:16670323-16670443 ( 67) TTATTTGT 1 chr3L:12417525-12417645 ( 94) ATATTTAC 1 chr2R:6143588-6143708 ( 79) TTATTTGT 1 chrX:9576595-9576715 ( 40) ATATTTAC 1 chr2L:5904705-5904825 ( 47) ATATTTAC 1 chr3L:11272390-11272510 ( 59) ATATTTAC 1 chr2R:19303951-19304071 ( 64) ATATTTAC 1 chr3R:31878423-31878543 ( 111) ATATTTAC 1 chr3L:137040-137160 ( 45) TTATTTGT 1 chrX:21377486-21377606 ( 55) GTATTTAC 1 chr2L:13807305-13807425 ( 73) GTATTTAC 1 chr3R:4236632-4236752 ( 44) CTATTTGC 1 chr3R:16484185-16484305 ( 94) TTATTTAT 1 chr2L:8132402-8132522 ( 27) TTATTTGA 1 chr2L:7954704-7954824 ( 105) TTATTTAT 1 chr3R:22635885-22636005 ( 8) TTATTTAT 1 chr3L:6614123-6614243 ( 9) TTATTTAT 1 chrX:6733332-6733452 ( 109) GTGTTTGT 1 chr3L:8985257-8985377 ( 6) TTATTTTC 1 chrX:14805894-14806014 ( 41) CTATTTAC 1 chr3R:31225442-31225562 ( 35) CTATTTAC 1 chr2R:11646070-11646190 ( 90) TTATTTTC 1 chr3R:14744543-14744663 ( 99) TTATTTTC 1 chr2L:4900301-4900421 ( 10) TTATTTTC 1 chr3R:17404282-17404402 ( 94) TTATTTAA 1 chr3R:23179432-23179552 ( 41) TTATTTAA 1 chr2R:23716155-23716275 ( 105) GTGTTTAT 1 chr3L:12791170-12791290 ( 29) TTGTTGGC 1 chrX:2663566-2663686 ( 82) GTGTTTGA 1 chr3R:8654111-8654231 ( 6) GTGTTTAT 1 chr2L:18981638-18981758 ( 26) ATGTTTTC 1 chrX:7228733-7228853 ( 55) CTGTTTGT 1 chr2R:16845511-16845631 ( 101) ATGTTTTC 1 chr2R:10773436-10773556 ( 33) TTGTGTGC 1 chr2R:9148687-9148807 ( 31) ATGTTTAA 1 chrX:17183621-17183741 ( 63) GTGTTTTC 1 chr2R:8121348-8121468 ( 31) TTGTGTGC 1 chr2L:20881840-20881960 ( 30) TTGTGTGC 1 chr2L:5090098-5090218 ( 102) GTGTTTTC 1 chr3R:8067157-8067277 ( 64) GTGTTTTC 1 chr2L:21009107-21009227 ( 106) ATATTTGT 1 chr3L:12080499-12080619 ( 45) TTGTTGAC 1 chr2R:18536186-18536306 ( 27) ATATTTGT 1 chr3L:21254567-21254687 ( 77) TTGTTGAC 1 chr2R:21382972-21383092 ( 91) TTGTTGAC 1 chr2R:17405128-17405248 ( 52) GTGTTTAA 1 chr2L:16318395-16318515 ( 42) TTGTTGAC 1 chr3L:15150186-15150306 ( 56) ATATTTGT 1 chr2L:9946259-9946379 ( 74) CTGTTTGA 1 chr2L:9937037-9937157 ( 86) CTGTTTGA 1 chr2R:6503131-6503251 ( 49) CTGTTTGA 1 chr4:695971-696091 ( 19) ATATTTGA 1 chr3R:17394452-17394572 ( 70) GTATTTAT 1 chr2L:13845276-13845396 ( 32) GTATTTAT 1 chr3L:14978601-14978721 ( 95) TTATGTGC 1 chrX:12716155-12716275 ( 36) ATGTTGGC 1 chr3L:13924780-13924900 ( 5) TTATGTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRTTTRC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.48181 E= 5.2e-034 -47 -128 -67 107 -1375 -1375 -1375 189 39 -1375 148 -1375 -1375 -1375 -1375 189 -1375 -1375 -267 184 -1375 -1375 -241 183 70 -1375 105 -176 -90 153 -1375 -46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRTTTRC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 138 E= 5.2e-034 0.195652 0.094203 0.144928 0.565217 0.000000 0.000000 0.000000 1.000000 0.355072 0.000000 0.644928 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.036232 0.963768 0.000000 0.000000 0.043478 0.956522 0.442029 0.000000 0.478261 0.079710 0.144928 0.659420 0.000000 0.195652 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRTTTRC MEME-1 regular expression -------------------------------------------------------------------------------- TT[GA]TTT[GA]C -------------------------------------------------------------------------------- Time 7.47 secs. ******************************************************************************** ******************************************************************************** MOTIF RHAAAYAA MEME-2 width = 8 sites = 129 llr = 870 E-value = 4.6e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif RHAAAYAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 328aa:a6 pos.-specific C :52::6:2 probability G 7::::::1 matrix T :3:::4:1 bits 2.1 1.9 ** * 1.7 ** * 1.5 ** * Relative 1.3 *** * Entropy 1.1 * ***** (9.7 bits) 0.9 * ***** 0.6 * ***** 0.4 ******* 0.2 ******** 0.0 -------- Multilevel GCAAACAA consensus ATC T C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RHAAAYAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:128522-128642 54 1.77e-05 CGCAGCTAAA GCAAACAA GTAAAACCCG chrX:9576595-9576715 17 1.77e-05 CAATGGATCG GCAAACAA CAATATGTAT chr2R:22525227-22525347 11 1.77e-05 GGGTGCACGA GCAAACAA CTGCGAAACA chr2L:7954704-7954824 77 1.77e-05 AATTAGCAAA GCAAACAA GCCAAAAGTC chr3R:25280097-25280217 48 1.77e-05 GCTTTTATGG GCAAACAA GCCTGCGATG chr2L:1122296-1122416 45 1.77e-05 CCGCAGCTAA GCAAACAA AGCTGCTCCT chr3L:15637767-15637887 95 1.77e-05 GAAAAGGTGA GCAAACAA AGGAAGTGCG chr3L:13924780-13924900 51 1.77e-05 AAACACGAGA GCAAACAA ATGTTGCAGG chr3L:8985257-8985377 84 7.43e-05 ATTTACATAC GTAAACAA ATAGCCGTGG chr3R:31225442-31225562 113 7.43e-05 TTGTTCCAGA GCAAACAC chr2L:20760257-20760377 70 7.43e-05 TCGAACACTT GTAAACAA GGAACAGCTG chr2R:21549429-21549549 77 7.43e-05 CGGCATGTAT GCAAATAA ATGCTAGAGA chr2L:19721422-19721542 83 7.43e-05 ACGCTCACCT GCAAACAC ACCTTTGCCA chr2L:19988251-19988371 45 7.43e-05 GTGTTTCTGG GCAAATAA TGGTTTTTAA chr2R:22324193-22324313 75 7.43e-05 GAAAACGAAG GCAAACAC AGGCGGTCTT chr2L:18864241-18864361 78 7.43e-05 TGTTTGATGG GCAAATAA GCTGTGGGGG chr2L:18981638-18981758 73 7.43e-05 CATGGCCTGC GCAAACAC AGGTATGTAA chr3R:5295576-5295696 53 7.43e-05 AGGCAGCTGG GCAAACAC TAACCGGTCT chr2L:5975269-5975389 91 7.43e-05 TGGCGCGTCA GCAAATAA ACTGGTCGTC chr3L:16914240-16914360 59 7.43e-05 CAATTGTAGC GCAAATAA ATATGACAGA chr3R:9625587-9625707 44 7.43e-05 AATCAGTTGG GCAAACAC AGCACAACGA chr2L:12013312-12013432 24 9.52e-05 TTCGCACACT GAAAACAA TTTCTTAAAA chr3R:5182405-5182525 55 9.52e-05 GAACAGCTGC GAAAACAA CTGGATCGTT chr3R:31878423-31878543 63 9.52e-05 AGATGGCAGG GAAAACAA CAAAAAAAAT chr2R:7512688-7512808 17 1.16e-04 TGATTTGCTT ACAAACAA ATAAGATACA chrX:15568501-15568621 100 1.16e-04 TTTATTCGGC ACAAACAA CCTGATTATT chr2L:7493610-7493730 77 1.16e-04 AAGTATTTAA ACAAACAA GGCGGAAACA chr2R:17405128-17405248 75 1.16e-04 GGGAAGCTGA ACAAACAA GAGGACAAGT chr3R:27502072-27502192 87 1.16e-04 CAGCTGGGAA ACAAACAA TGACAAGCAA chr2L:13467966-13468086 110 1.16e-04 cacacacacc acaaacaa aca chr3L:8129354-8129474 68 1.16e-04 ATGTACAATT ACAAACAA TTATTTTTTG chr3L:3442899-3443019 110 1.16e-04 AGCAAATCAA ACAAACAA CTC chr2R:18346151-18346271 65 1.31e-04 GAAAACTTTG GCCAACAA AGCAAAGACA chr3L:11252801-11252921 67 1.31e-04 GACTTTCCAA GCCAACAA AACACAGAAA chr2L:14743489-14743609 2 1.31e-04 G GCCAACAA GGATTCGGAC chr3L:15762626-15762746 62 1.31e-04 TTCCAGAAAC GCCAACAA CTCGCATGCC chr3L:11777622-11777742 53 1.91e-04 ATAAGGCAGG GCAAATAC AAACACAAAC chr3R:14744543-14744663 75 1.91e-04 CCCAAAATGT GTAAATAA GGCCTTAAAT chr2R:6143588-6143708 44 1.91e-04 ATACCCACAT GTAAATAA ACGTATTGGT chr3L:13315598-13315718 41 1.91e-04 ACAGTCAAAG GTAAATAA CAGCAGCTGC chrX:3935111-3935231 71 1.91e-04 TTGTGTCACT GTAAATAA TGAGAATTTC chr2L:5904705-5904825 71 1.91e-04 AATTTCACAG GCAAATAC TCGCATTCAG chr3L:12080499-12080619 60 1.91e-04 GACATTCCGT GCAAATAC AAACAGTTGG chr3R:29866798-29866918 66 1.91e-04 GATCAGATGA GTAAATAA TTCAATTTCG chr2L:13903938-13904058 76 1.91e-04 AGGAGATACA GTAAACAC CCACTAGATA chr3R:30454504-30454624 58 1.91e-04 TGTTTACAAT GTAAACAC GTGCTGTGCG chr2R:19303951-19304071 42 1.91e-04 CCGCTCAAAA GTAAATAA AGAACGTTAT chr3L:12409423-12409543 106 1.91e-04 CGTCACTTGT GTAAATAA GGTCTCT chr2R:24616149-24616269 75 1.91e-04 ATGTTGAAAG GTAAATAA GGGCGGGCAA chr2R:23522579-23522699 56 1.91e-04 AAAAAGCAGA GCAAATAC TGCACCCGCT chr2L:13807305-13807425 108 1.91e-04 AACTCGCTGG GTAAATAA AGCCA chr2R:18168291-18168411 59 1.91e-04 ATAAATTTTA GTAAACAC AGATGAATAA chr2L:14745001-14745121 54 2.48e-04 CAAAGCCCCG GCAAACAG AAGCGATAGC chr2L:12045210-12045330 110 2.48e-04 AAATGCAAAT GAAAATAA GAC chr3L:8696969-8697089 54 2.48e-04 GATAGCTTCT GCAAACAG CGAACATTTC chr2L:13808092-13808212 75 2.48e-04 ACAAAATGCA GCAAACAG GGGAACAGCA chr2L:18678035-18678155 47 2.48e-04 GAAAAATGTC GAAAATAA GGCTCGTCCG chr2L:9783250-9783370 72 2.48e-04 TATGCGAATG GCAAACAG AGTGTGGTGC chr3R:8654111-8654231 93 2.48e-04 CCGGACTGCC GAAAATAA TAATAAAACG chrX:10728192-10728312 22 3.32e-04 CAGGCAGACA ACAAATAA ACAATAAACC chr2R:11646070-11646190 10 3.32e-04 GCGGAGCTG GCAAACAT ACTCGGTTCT chrX:1828121-1828241 84 3.32e-04 TCAATCACCC ACAAACAC CTGATTCTAC chr3L:22826319-22826439 83 3.32e-04 TGTTTTCTCT ATAAACAA CAGAAAAAAA chr2L:9526671-9526791 80 3.32e-04 GTATAGTTGA ATAAACAA GCGAACCTAT chr3R:17595219-17595339 38 3.32e-04 CGTACGTTCT GCAAACAT TTTACTTTCA chr2R:10871422-10871542 84 3.32e-04 ACACAACTGC GCAAACAT TGCGAAAAAC chr3R:4236632-4236752 76 3.32e-04 TATCGCAACA ATAAACAA AGCTCCTCGG chr2L:9707660-9707780 73 3.32e-04 ATATAAGAAT ATAAACAA TGAGGCTACT chr2R:15784610-15784730 82 3.32e-04 TCGTGCAAAA ACAAACAC AAACAGAGAC chr3R:5454468-5454588 96 3.32e-04 CTGATAAAAA ACAAACAC CCGCCCAATT chr3L:14978601-14978721 54 3.56e-04 GCAGACCCCA AAAAACAA GAAGGGTCCC chr2L:1989709-1989829 47 3.56e-04 ATAAGACGCC AAAAACAA CTGAAACATC chr2R:8683525-8683645 109 3.56e-04 AAGGCCTTAC AAAAACAA GGAA chr2L:5090098-5090218 5 3.56e-04 cgaa aaaaacaa aagaaataaG chr2L:4119538-4119658 10 4.04e-04 ATCGGAAGT GCCAATAA GTAGTTGTCA chr3R:14474824-14474944 9 4.04e-04 AAAACATC GTCAACAA CAGCAGGAAA chrX:1618129-1618249 67 4.04e-04 GCGGCGGCGG GCCAATAA CTGATTGCCC chr2R:21382972-21383092 41 4.04e-04 AGTCAACAAC GTCAACAA GGCGGGATGT chr3R:29716146-29716266 68 4.43e-04 AACAGCAGCC GACAACAA ACGCAAGAGA chr3R:17712984-17713104 91 4.43e-04 AATCAGCTGT GACAACAA CAAGTTTCTC chr3L:16178549-16178669 98 4.43e-04 TCTGCAGACC Gacaacaa cagccgcaac chr2L:6453581-6453701 32 4.43e-04 TGGGTATGGC GTAAATAC GCAAAAGCGC chr2R:18536186-18536306 81 4.43e-04 AGCTGCAGGG GACAACAA CTGCTGTTGC chr2L:11046201-11046321 88 4.43e-04 AGCAGCGCGT GACAACAA CAACAAAGGC chr3R:17059111-17059231 4 5.16e-04 AAA GCAAATAG CAATCTAAGC chr2L:16318395-16318515 76 5.16e-04 AATGCGAAAT GCAAATAG CACCCAGCCA chrX:4936655-4936775 24 6.45e-04 CATATGATAT GCAAATAT GAAGCGCAAC chr2R:21236786-21236906 26 6.45e-04 AAATTAATTT ATAAACAC AATTGACATT chr3R:10076814-10076934 2 6.45e-04 A GAAAACAG GATGGCAGCC chr3R:16484185-16484305 25 6.45e-04 TAGTGATGGT ACAAATAC TAGTGACACT chr2L:8132402-8132522 65 6.45e-04 TGAAAGAGCT GTAAACAT GACATATTGT chr3R:29788026-29788146 108 6.45e-04 AGATCGTCAA ATAAATAA GCACA chr3L:2254454-2254574 47 6.45e-04 TAATTCATGC GTAAACAT TTGCGCTTGT chr3R:22635885-22636005 64 6.45e-04 TTAGTATAAA ACAAATAC ACGAGGGAAC chr3R:15468506-15468626 62 6.45e-04 CAACGCTTGT GCAAATAT GTACATATGT chrX:17121821-17121941 55 6.45e-04 TTTGCTCTCT ATAAATAA AGTCAACTAA chr3L:15150186-15150306 69 6.45e-04 TTTGTTCTGG GCAAATAT GAATGATGCG chr2L:18561807-18561927 6 7.34e-04 CAAGG GAAAACAT ATGCGATCGT chrX:6037835-6037955 9 7.34e-04 GATTTTTC GAAAACAT CGATGACATC chrX:6733332-6733452 8 7.34e-04 ATCGGCT AAAAATAA GTCGCTTTAC chr3L:12791170-12791290 94 7.34e-04 GAGCGGAGTG AAAAATAA TTATTTTACT chr3R:31882308-31882428 96 7.34e-04 GCAGCTGCAT AAAAATAA AATCCACTGT chr2L:5253922-5254042 48 7.34e-04 GACGTTGACA AAAAACAC GCGGGACCCG chr3L:3209035-3209155 20 7.34e-04 AACCACTTAC AAAAACAC CTGTTCTTCG chr2R:22740362-22740482 59 7.34e-04 TTCAATTGAA AAAAACAC GTCCAGCGCG chr2R:6503131-6503251 79 7.34e-04 TAGCGTCAAT ACAAACAG TTTGACAATT chrX:7699972-7700092 11 7.34e-04 GCCTGGGGGA AAAAATAA TAATGAATAA chr2R:11648532-11648652 113 8.05e-04 CACAATGGCC GTCAACAC chr3L:20788115-20788235 72 8.05e-04 CGCGAATGGC GCCAATAC TTCAGTGGTT chr3L:16670323-16670443 82 8.53e-04 TGTCTAATTC GACAACAC AGAAGGCAGA chr2R:9078772-9078892 56 8.53e-04 TATTCGGGCA GACAATAA CGACGTTAAA chr2L:6464910-6465030 99 8.53e-04 AGCAGGGACC GACAATAA ATATTGAAAG chr3R:29560130-29560250 103 1.04e-03 GAGTCATTGC ATAAATAC ATAGAGCCAG chr3L:6614123-6614243 68 1.04e-03 GGTTCACTGG GTAAATAT TTGAATACGG chr3R:9338938-9339058 98 1.13e-03 ATAGTGTGCC AAAAATAC ACCAAGCTTG chrX:17183621-17183741 103 1.13e-03 ACAGAATACA ATAAACAG ACGGTCTGGA chr3L:13499646-13499766 70 1.19e-03 TGACGTTGCC AAAAACAG GACAACGCTC chr2R:16214167-16214287 16 1.28e-03 AAACTTTGGG GTCAACAG GCGATGGCGA chr2L:2909612-2909732 76 1.28e-03 TGTCAACGGT GTCAACAG CACGCTACAG chr3R:24039297-24039417 111 1.28e-03 TGCCCCAAAT GTCAACAG GA chr3R:21260932-21261052 106 1.28e-03 TATTTACAAA GTCAACAG AGTATAT chr2R:13464199-13464319 94 1.39e-03 CATTTAAATT ATCAACAC GAAGAGGGAA chr2R:10044021-10044141 52 1.47e-03 AGTCAAGCAG AACAATAA AGTGCGTCAA chr3L:4357832-4357952 58 1.47e-03 CACAGTGCTC GACAACAT TAAACAGCTG chr3R:20766208-20766328 105 1.51e-03 CGATATCCTT ACCAACAT GATCTCAC chr2L:9687154-9687274 84 1.56e-03 GCCGAAGCTT ATAAATAT TGCAAGCCAC chr3R:17404282-17404402 30 1.56e-03 ACTACAGATA ATAAATAT CCAGCTGGGC chr3L:16145276-16145396 44 1.63e-03 CGCTCCCGTG GCAAAAAA TTAGGTTAAA chr2L:11023524-11023644 48 1.96e-03 CTGTAGGGGC ACAAAAAA GGCGTGCAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RHAAAYAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:128522-128642 1.8e-05 53_[+2]_59 chrX:9576595-9576715 1.8e-05 16_[+2]_96 chr2R:22525227-22525347 1.8e-05 10_[+2]_102 chr2L:7954704-7954824 1.8e-05 76_[+2]_36 chr3R:25280097-25280217 1.8e-05 47_[+2]_65 chr2L:1122296-1122416 1.8e-05 44_[+2]_68 chr3L:15637767-15637887 1.8e-05 94_[+2]_18 chr3L:13924780-13924900 1.8e-05 50_[+2]_62 chr3L:8985257-8985377 7.4e-05 83_[+2]_29 chr3R:31225442-31225562 7.4e-05 112_[+2] chr2L:20760257-20760377 7.4e-05 69_[+2]_43 chr2R:21549429-21549549 7.4e-05 76_[+2]_36 chr2L:19721422-19721542 7.4e-05 82_[+2]_30 chr2L:19988251-19988371 7.4e-05 44_[+2]_68 chr2R:22324193-22324313 7.4e-05 74_[+2]_38 chr2L:18864241-18864361 7.4e-05 77_[+2]_35 chr2L:18981638-18981758 7.4e-05 72_[+2]_40 chr3R:5295576-5295696 7.4e-05 52_[+2]_60 chr2L:5975269-5975389 7.4e-05 90_[+2]_22 chr3L:16914240-16914360 7.4e-05 58_[+2]_54 chr3R:9625587-9625707 7.4e-05 43_[+2]_69 chr2L:12013312-12013432 9.5e-05 23_[+2]_89 chr3R:5182405-5182525 9.5e-05 54_[+2]_58 chr3R:31878423-31878543 9.5e-05 62_[+2]_50 chr2R:7512688-7512808 0.00012 16_[+2]_96 chrX:15568501-15568621 0.00012 99_[+2]_13 chr2L:7493610-7493730 0.00012 76_[+2]_36 chr2R:17405128-17405248 0.00012 74_[+2]_38 chr3R:27502072-27502192 0.00012 86_[+2]_26 chr2L:13467966-13468086 0.00012 109_[+2]_3 chr3L:8129354-8129474 0.00012 67_[+2]_45 chr3L:3442899-3443019 0.00012 109_[+2]_3 chr2R:18346151-18346271 0.00013 64_[+2]_48 chr3L:11252801-11252921 0.00013 66_[+2]_46 chr2L:14743489-14743609 0.00013 1_[+2]_111 chr3L:15762626-15762746 0.00013 61_[+2]_51 chr3L:11777622-11777742 0.00019 52_[+2]_60 chr3R:14744543-14744663 0.00019 74_[+2]_38 chr2R:6143588-6143708 0.00019 43_[+2]_69 chr3L:13315598-13315718 0.00019 40_[+2]_72 chrX:3935111-3935231 0.00019 70_[+2]_42 chr2L:5904705-5904825 0.00019 70_[+2]_42 chr3L:12080499-12080619 0.00019 59_[+2]_53 chr3R:29866798-29866918 0.00019 65_[+2]_47 chr2L:13903938-13904058 0.00019 75_[+2]_37 chr3R:30454504-30454624 0.00019 57_[+2]_55 chr2R:19303951-19304071 0.00019 41_[+2]_71 chr3L:12409423-12409543 0.00019 105_[+2]_7 chr2R:24616149-24616269 0.00019 74_[+2]_38 chr2R:23522579-23522699 0.00019 55_[+2]_57 chr2L:13807305-13807425 0.00019 107_[+2]_5 chr2R:18168291-18168411 0.00019 58_[+2]_54 chr2L:14745001-14745121 0.00025 53_[+2]_59 chr2L:12045210-12045330 0.00025 109_[+2]_3 chr3L:8696969-8697089 0.00025 53_[+2]_59 chr2L:13808092-13808212 0.00025 74_[+2]_38 chr2L:18678035-18678155 0.00025 46_[+2]_66 chr2L:9783250-9783370 0.00025 71_[+2]_41 chr3R:8654111-8654231 0.00025 92_[+2]_20 chrX:10728192-10728312 0.00033 21_[+2]_91 chr2R:11646070-11646190 0.00033 9_[+2]_103 chrX:1828121-1828241 0.00033 83_[+2]_29 chr3L:22826319-22826439 0.00033 82_[+2]_30 chr2L:9526671-9526791 0.00033 79_[+2]_33 chr3R:17595219-17595339 0.00033 37_[+2]_75 chr2R:10871422-10871542 0.00033 83_[+2]_29 chr3R:4236632-4236752 0.00033 75_[+2]_37 chr2L:9707660-9707780 0.00033 72_[+2]_40 chr2R:15784610-15784730 0.00033 81_[+2]_31 chr3R:5454468-5454588 0.00033 95_[+2]_17 chr3L:14978601-14978721 0.00036 53_[+2]_59 chr2L:1989709-1989829 0.00036 46_[+2]_66 chr2R:8683525-8683645 0.00036 108_[+2]_4 chr2L:5090098-5090218 0.00036 4_[+2]_108 chr2L:4119538-4119658 0.0004 9_[+2]_103 chr3R:14474824-14474944 0.0004 8_[+2]_104 chrX:1618129-1618249 0.0004 66_[+2]_46 chr2R:21382972-21383092 0.0004 40_[+2]_72 chr3R:29716146-29716266 0.00044 67_[+2]_45 chr3R:17712984-17713104 0.00044 90_[+2]_22 chr3L:16178549-16178669 0.00044 97_[+2]_15 chr2L:6453581-6453701 0.00044 31_[+2]_81 chr2R:18536186-18536306 0.00044 80_[+2]_32 chr2L:11046201-11046321 0.00044 87_[+2]_25 chr3R:17059111-17059231 0.00052 3_[+2]_109 chr2L:16318395-16318515 0.00052 75_[+2]_37 chrX:4936655-4936775 0.00065 23_[+2]_89 chr2R:21236786-21236906 0.00065 25_[+2]_87 chr3R:10076814-10076934 0.00065 1_[+2]_111 chr3R:16484185-16484305 0.00065 24_[+2]_88 chr2L:8132402-8132522 0.00065 64_[+2]_48 chr3R:29788026-29788146 0.00065 107_[+2]_5 chr3L:2254454-2254574 0.00065 46_[+2]_66 chr3R:22635885-22636005 0.00065 63_[+2]_49 chr3R:15468506-15468626 0.00065 61_[+2]_51 chrX:17121821-17121941 0.00065 54_[+2]_58 chr3L:15150186-15150306 0.00065 68_[+2]_44 chr2L:18561807-18561927 0.00073 5_[+2]_107 chrX:6037835-6037955 0.00073 8_[+2]_104 chrX:6733332-6733452 0.00073 7_[+2]_105 chr3L:12791170-12791290 0.00073 93_[+2]_19 chr3R:31882308-31882428 0.00073 95_[+2]_17 chr2L:5253922-5254042 0.00073 47_[+2]_65 chr3L:3209035-3209155 0.00073 19_[+2]_93 chr2R:22740362-22740482 0.00073 58_[+2]_54 chr2R:6503131-6503251 0.00073 78_[+2]_34 chrX:7699972-7700092 0.00073 10_[+2]_102 chr2R:11648532-11648652 0.0008 112_[+2] chr3L:20788115-20788235 0.0008 71_[+2]_41 chr3L:16670323-16670443 0.00085 81_[+2]_31 chr2R:9078772-9078892 0.00085 55_[+2]_57 chr2L:6464910-6465030 0.00085 98_[+2]_14 chr3R:29560130-29560250 0.001 102_[+2]_10 chr3L:6614123-6614243 0.001 67_[+2]_45 chr3R:9338938-9339058 0.0011 97_[+2]_15 chrX:17183621-17183741 0.0011 102_[+2]_10 chr3L:13499646-13499766 0.0012 69_[+2]_43 chr2R:16214167-16214287 0.0013 15_[+2]_97 chr2L:2909612-2909732 0.0013 75_[+2]_37 chr3R:24039297-24039417 0.0013 110_[+2]_2 chr3R:21260932-21261052 0.0013 105_[+2]_7 chr2R:13464199-13464319 0.0014 93_[+2]_19 chr2R:10044021-10044141 0.0015 51_[+2]_61 chr3L:4357832-4357952 0.0015 57_[+2]_55 chr3R:20766208-20766328 0.0015 104_[+2]_8 chr2L:9687154-9687274 0.0016 83_[+2]_29 chr3R:17404282-17404402 0.0016 29_[+2]_83 chr3L:16145276-16145396 0.0016 43_[+2]_69 chr2L:11023524-11023644 0.002 47_[+2]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RHAAAYAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RHAAAYAA width=8 seqs=129 chr2L:128522-128642 ( 54) GCAAACAA 1 chrX:9576595-9576715 ( 17) GCAAACAA 1 chr2R:22525227-22525347 ( 11) GCAAACAA 1 chr2L:7954704-7954824 ( 77) GCAAACAA 1 chr3R:25280097-25280217 ( 48) GCAAACAA 1 chr2L:1122296-1122416 ( 45) GCAAACAA 1 chr3L:15637767-15637887 ( 95) GCAAACAA 1 chr3L:13924780-13924900 ( 51) GCAAACAA 1 chr3L:8985257-8985377 ( 84) GTAAACAA 1 chr3R:31225442-31225562 ( 113) GCAAACAC 1 chr2L:20760257-20760377 ( 70) GTAAACAA 1 chr2R:21549429-21549549 ( 77) GCAAATAA 1 chr2L:19721422-19721542 ( 83) GCAAACAC 1 chr2L:19988251-19988371 ( 45) GCAAATAA 1 chr2R:22324193-22324313 ( 75) GCAAACAC 1 chr2L:18864241-18864361 ( 78) GCAAATAA 1 chr2L:18981638-18981758 ( 73) GCAAACAC 1 chr3R:5295576-5295696 ( 53) GCAAACAC 1 chr2L:5975269-5975389 ( 91) GCAAATAA 1 chr3L:16914240-16914360 ( 59) GCAAATAA 1 chr3R:9625587-9625707 ( 44) GCAAACAC 1 chr2L:12013312-12013432 ( 24) GAAAACAA 1 chr3R:5182405-5182525 ( 55) GAAAACAA 1 chr3R:31878423-31878543 ( 63) GAAAACAA 1 chr2R:7512688-7512808 ( 17) ACAAACAA 1 chrX:15568501-15568621 ( 100) ACAAACAA 1 chr2L:7493610-7493730 ( 77) ACAAACAA 1 chr2R:17405128-17405248 ( 75) ACAAACAA 1 chr3R:27502072-27502192 ( 87) ACAAACAA 1 chr2L:13467966-13468086 ( 110) ACAAACAA 1 chr3L:8129354-8129474 ( 68) ACAAACAA 1 chr3L:3442899-3443019 ( 110) ACAAACAA 1 chr2R:18346151-18346271 ( 65) GCCAACAA 1 chr3L:11252801-11252921 ( 67) GCCAACAA 1 chr2L:14743489-14743609 ( 2) GCCAACAA 1 chr3L:15762626-15762746 ( 62) GCCAACAA 1 chr3L:11777622-11777742 ( 53) GCAAATAC 1 chr3R:14744543-14744663 ( 75) GTAAATAA 1 chr2R:6143588-6143708 ( 44) GTAAATAA 1 chr3L:13315598-13315718 ( 41) GTAAATAA 1 chrX:3935111-3935231 ( 71) GTAAATAA 1 chr2L:5904705-5904825 ( 71) GCAAATAC 1 chr3L:12080499-12080619 ( 60) GCAAATAC 1 chr3R:29866798-29866918 ( 66) GTAAATAA 1 chr2L:13903938-13904058 ( 76) GTAAACAC 1 chr3R:30454504-30454624 ( 58) GTAAACAC 1 chr2R:19303951-19304071 ( 42) GTAAATAA 1 chr3L:12409423-12409543 ( 106) GTAAATAA 1 chr2R:24616149-24616269 ( 75) GTAAATAA 1 chr2R:23522579-23522699 ( 56) GCAAATAC 1 chr2L:13807305-13807425 ( 108) GTAAATAA 1 chr2R:18168291-18168411 ( 59) GTAAACAC 1 chr2L:14745001-14745121 ( 54) GCAAACAG 1 chr2L:12045210-12045330 ( 110) GAAAATAA 1 chr3L:8696969-8697089 ( 54) GCAAACAG 1 chr2L:13808092-13808212 ( 75) GCAAACAG 1 chr2L:18678035-18678155 ( 47) GAAAATAA 1 chr2L:9783250-9783370 ( 72) GCAAACAG 1 chr3R:8654111-8654231 ( 93) GAAAATAA 1 chrX:10728192-10728312 ( 22) ACAAATAA 1 chr2R:11646070-11646190 ( 10) GCAAACAT 1 chrX:1828121-1828241 ( 84) ACAAACAC 1 chr3L:22826319-22826439 ( 83) ATAAACAA 1 chr2L:9526671-9526791 ( 80) ATAAACAA 1 chr3R:17595219-17595339 ( 38) GCAAACAT 1 chr2R:10871422-10871542 ( 84) GCAAACAT 1 chr3R:4236632-4236752 ( 76) ATAAACAA 1 chr2L:9707660-9707780 ( 73) ATAAACAA 1 chr2R:15784610-15784730 ( 82) ACAAACAC 1 chr3R:5454468-5454588 ( 96) ACAAACAC 1 chr3L:14978601-14978721 ( 54) AAAAACAA 1 chr2L:1989709-1989829 ( 47) AAAAACAA 1 chr2R:8683525-8683645 ( 109) AAAAACAA 1 chr2L:5090098-5090218 ( 5) AAAAACAA 1 chr2L:4119538-4119658 ( 10) GCCAATAA 1 chr3R:14474824-14474944 ( 9) GTCAACAA 1 chrX:1618129-1618249 ( 67) GCCAATAA 1 chr2R:21382972-21383092 ( 41) GTCAACAA 1 chr3R:29716146-29716266 ( 68) GACAACAA 1 chr3R:17712984-17713104 ( 91) GACAACAA 1 chr3L:16178549-16178669 ( 98) GACAACAA 1 chr2L:6453581-6453701 ( 32) GTAAATAC 1 chr2R:18536186-18536306 ( 81) GACAACAA 1 chr2L:11046201-11046321 ( 88) GACAACAA 1 chr3R:17059111-17059231 ( 4) GCAAATAG 1 chr2L:16318395-16318515 ( 76) GCAAATAG 1 chrX:4936655-4936775 ( 24) GCAAATAT 1 chr2R:21236786-21236906 ( 26) ATAAACAC 1 chr3R:10076814-10076934 ( 2) GAAAACAG 1 chr3R:16484185-16484305 ( 25) ACAAATAC 1 chr2L:8132402-8132522 ( 65) GTAAACAT 1 chr3R:29788026-29788146 ( 108) ATAAATAA 1 chr3L:2254454-2254574 ( 47) GTAAACAT 1 chr3R:22635885-22636005 ( 64) ACAAATAC 1 chr3R:15468506-15468626 ( 62) GCAAATAT 1 chrX:17121821-17121941 ( 55) ATAAATAA 1 chr3L:15150186-15150306 ( 69) GCAAATAT 1 chr2L:18561807-18561927 ( 6) GAAAACAT 1 chrX:6037835-6037955 ( 9) GAAAACAT 1 chrX:6733332-6733452 ( 8) AAAAATAA 1 chr3L:12791170-12791290 ( 94) AAAAATAA 1 chr3R:31882308-31882428 ( 96) AAAAATAA 1 chr2L:5253922-5254042 ( 48) AAAAACAC 1 chr3L:3209035-3209155 ( 20) AAAAACAC 1 chr2R:22740362-22740482 ( 59) AAAAACAC 1 chr2R:6503131-6503251 ( 79) ACAAACAG 1 chrX:7699972-7700092 ( 11) AAAAATAA 1 chr2R:11648532-11648652 ( 113) GTCAACAC 1 chr3L:20788115-20788235 ( 72) GCCAATAC 1 chr3L:16670323-16670443 ( 82) GACAACAC 1 chr2R:9078772-9078892 ( 56) GACAATAA 1 chr2L:6464910-6465030 ( 99) GACAATAA 1 chr3R:29560130-29560250 ( 103) ATAAATAC 1 chr3L:6614123-6614243 ( 68) GTAAATAT 1 chr3R:9338938-9339058 ( 98) AAAAATAC 1 chrX:17183621-17183741 ( 103) ATAAACAG 1 chr3L:13499646-13499766 ( 70) AAAAACAG 1 chr2R:16214167-16214287 ( 16) GTCAACAG 1 chr2L:2909612-2909732 ( 76) GTCAACAG 1 chr3R:24039297-24039417 ( 111) GTCAACAG 1 chr3R:21260932-21261052 ( 106) GTCAACAG 1 chr2R:13464199-13464319 ( 94) ATCAACAC 1 chr2R:10044021-10044141 ( 52) AACAATAA 1 chr3L:4357832-4357952 ( 58) GACAACAT 1 chr3R:20766208-20766328 ( 105) ACCAACAT 1 chr2L:9687154-9687274 ( 84) ATAAATAT 1 chr3R:17404282-17404402 ( 30) ATAAATAT 1 chr3L:16145276-16145396 ( 44) GCAAAAAA 1 chr2L:11023524-11023644 ( 48) ACAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RHAAAYAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.51524 E= 4.6e-016 30 -1366 153 -1366 -13 102 -1366 9 156 -18 -1366 -1366 188 -1366 -1366 -1366 188 -1366 -1366 -1366 -413 144 -1366 44 188 -1366 -1366 -1366 102 -3 -109 -121 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RHAAAYAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 129 E= 4.6e-016 0.333333 0.000000 0.666667 0.000000 0.248062 0.465116 0.000000 0.286822 0.798450 0.201550 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.015504 0.620155 0.000000 0.364341 1.000000 0.000000 0.000000 0.000000 0.550388 0.224806 0.108527 0.116279 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RHAAAYAA MEME-2 regular expression -------------------------------------------------------------------------------- [GA][CTA][AC]AA[CT]A[AC] -------------------------------------------------------------------------------- Time 14.04 secs. ******************************************************************************** ******************************************************************************** MOTIF RCAGCTGC MEME-3 width = 8 sites = 68 llr = 527 E-value = 1.1e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCAGCTGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 5:71:::1 pos.-specific C :a::a:16 probability G 3::9::91 matrix T 2:3::a:2 bits 2.1 * * 1.9 * ** 1.7 * ** 1.5 * **** Relative 1.3 * **** Entropy 1.1 ****** (11.2 bits) 0.9 ****** 0.6 ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACAGCTGC consensus G T T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21549429-21549549 60 1.27e-05 AAAAATAAGC ACAGCTGC GGCATGTATG chr3L:4357832-4357952 69 1.27e-05 ACAACATTAA ACAGCTGC ACTCGAAACG chr2L:13903938-13904058 52 1.27e-05 TACAGTAAAC ACAGCTGC CAACTGAGGA chr3R:5182405-5182525 47 1.27e-05 ATGTAGTGGA ACAGCTGC GAAAACAACT chr2R:8121348-8121468 104 1.27e-05 AGGCGACATC ACAGCTGC CTTGAGTAA chr3R:30454504-30454624 29 1.27e-05 GCATTCATTC ACAGCTGC TCGAGTTTCT chr3R:23179432-23179552 96 1.27e-05 GAACATGTGT ACAGCTGC ATATAGATAC chr3L:967989-968109 58 1.27e-05 CCTTGTATTA ACAGCTGC CCGCAATGTC chr2L:6086836-6086956 29 2.35e-05 CGCCCTCGTT GCAGCTGC AGCTGTGTGC chr3L:13315598-13315718 51 2.35e-05 GTAAATAACA GCAGCTGC AAAAACACCA chr3R:31882308-31882428 86 2.35e-05 TTACATAGCC GCAGCTGC ATAAAAATAA chr3R:29560130-29560250 25 2.35e-05 ACCACGCATT GCAGCTGC AATTCTTGGC chr3L:4543982-4544102 42 3.60e-05 TGTTTGCCTA TCAGCTGC TGTCACCGCT chr2L:9526671-9526791 57 3.60e-05 TTTTGTTTTA TCAGCTGC AGAAAGTATA chrX:7228733-7228853 70 3.60e-05 TGTTATAGTT TCAGCTGC TAAACACCTT chr3R:29095674-29095794 49 4.86e-05 AATGGCAACG ACTGCTGC CAGCGGGGAG chr2L:3165423-3165543 43 4.86e-05 AGTTCTCTCG ACTGCTGC GCTGCTGCTT chr2L:16282193-16282313 1 4.86e-05 . ACTGCTGC AGCAGGCGGA chr2R:11648532-11648652 24 7.42e-05 AGCTCCAGAA ACAGCTGT CCCACCAGCA chr2L:20760257-20760377 81 7.42e-05 TAAACAAGGA ACAGCTGT GCAAGTTGTC chr3L:16490287-16490407 55 7.42e-05 AAGATTGGAG GCTGCTGC GCATGCGCAG chr3L:2469764-2469884 84 7.42e-05 TACGCTTTGC ACAGCTGT TGTATCTGTG chr2R:15951938-15952058 102 7.42e-05 GCAAGGTGCT GCTGCTGC TGGTGACGTG chr3L:20788115-20788235 35 7.42e-05 TGTCACTATC GCTGCTGC CACAGTAAGA chr3R:24301580-24301700 75 7.42e-05 GGATGTATGC ACAGCTGT CACTAAGATA chr3L:8129354-8129474 18 7.42e-05 ATCCATATCC ACAGCTGT CTACAGTTGG chr2L:6524098-6524218 66 8.68e-05 TGATATTTTT GCAGCTGT TGCGGTTGCC chr2L:857199-857319 59 9.93e-05 CTCCCACTCC TCTGCTGC TCGTTGCCGA chr2R:24294705-24294825 32 9.93e-05 TGAGTTCAGT TCTGCTGC TCGCACCAGG chr3L:16914240-16914360 33 9.93e-05 GGACAAGGTG TCTGCTGC TCCGTTTTCA chr2L:20000621-20000741 54 1.14e-04 TGTTAAGTAC ACAACTGC AATTGTTTAA chr3R:17595219-17595339 85 1.14e-04 GCGCTTTGCC ACAACTGC TAAAACAGTG chr2R:10871422-10871542 76 1.14e-04 AAATGCCCAC ACAACTGC GCAAACATTG chr2R:17405128-17405248 42 1.14e-04 TAAAAGAAAT ACAACTGC AAGTGTTTAA chr2R:11646070-11646190 98 1.54e-04 CTTTATTTTC ACAGCTGG CGTCGTGTGA chr3R:17712984-17713104 83 1.54e-04 GGAGGGAGAA TCAGCTGT GACAACAACA chrX:2663566-2663686 90 1.54e-04 TCGTGTTTGA TCAGCTGT GAAAAGAGCA chr3R:17404282-17404402 66 1.54e-04 TTTTGTTCTC TCAGCTGT TCAAAGACGT chr2R:18536186-18536306 100 1.54e-04 TGCTGTTGCC TCAGCTGT CCGTGAACTG chr3R:22411958-22412078 89 1.54e-04 ACCTGTGTTA ACAGCTCC ACTTCCAGGC chr4:695971-696091 46 1.97e-04 GAGATTCTGT ACTGCTGT GCGATTGAGC chr2R:21708399-21708519 72 1.97e-04 TTTCTGGCGA ACAGCTGA TGCGGCTGCA chr3L:11272390-11272510 71 1.97e-04 ATTTACCCAG GCAACTGC AATTGTCTGG chr3R:22635885-22636005 83 1.97e-04 CGAGGGAACA GCAACTGC ACAGCGAGAC chr2L:9937037-9937157 94 1.97e-04 GACTGTTTGA ACTGCTGT TTTGGATTTA chr2L:5090098-5090218 80 1.97e-04 TGATTTTGCA ACtgctgt gctgtgctgt chr3R:8654111-8654231 36 1.97e-04 TGAAATTGAC ACAGCTGA GATCCGCGAA chr3R:14653427-14653547 101 2.18e-04 AACTCCATCT GCAGCTCC ACTTGGCCAC chr2L:9946259-9946379 41 2.18e-04 ATGCGGCAGT GCAGCTGG GAGGAGATGG chr3R:4394267-4394387 106 2.18e-04 TCTTTCCACC GCAGCTCC AGAGCAT chr3R:5295576-5295696 45 2.18e-04 CAAGCGTGAG GCAGCTGG GCAAACACTA chr3R:27502072-27502192 76 2.18e-04 CAGACAGAAA GCAGCTGG GAAACAAACA chr3R:8748888-8749008 53 2.18e-04 TGTTTCCACA GCAGCTCC GCAAATGTTA chr2L:14745001-14745121 76 2.44e-04 GATAGCAAAA GCAGCTGA AGAGAGGTAT chr2R:23359263-23359383 103 2.44e-04 CAGTGTAAGC GCAGCTGA TAACGGGCGG chr2R:24591135-24591255 43 2.58e-04 ATACACACCG TCAACTGC CAGGGCGAAC chr2R:8240321-8240441 50 2.58e-04 CGTTGTTTAC TCAACTGC AGCGGAACGG chr2R:16214167-16214287 54 2.98e-04 AGTTGCTTGC TCAGCTGG AATGAAAAAT chr3L:8696969-8697089 100 3.53e-04 TTATTGAATT ACTGCTGG CTAAAATTAC chr2R:6503131-6503251 57 3.53e-04 CACTGTTTGA TCAGCTGA AAAATAGCGT chr2R:23716155-23716275 27 3.98e-04 TCGCACTCGC ACAACTGT TGCTCGCGAT chr2R:11644016-11644136 65 3.98e-04 TACAACCTTT ACTGCTGA ATTTGCGCAG chr3R:6344021-6344141 111 3.98e-04 TGCTGCGAGT GCTACTGC CA chr2R:11575669-11575789 80 4.34e-04 AAATTAGTTG GCTGCTCC CCATCCCGAC chr2R:10773436-10773556 2 4.34e-04 T GCTGCTCC GCTGCCCATC chr2L:1122296-1122416 54 4.34e-04 AGCAAACAAA GCTGCTCC TGAAAGTAAC chr2L:13467966-13468086 57 4.34e-04 ATGTATTTAC ACAGCTCT ATTTGTATAT chr3L:15150186-15150306 23 4.34e-04 TTGATGTTGA ACAGCTCT TGAGGCGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21549429-21549549 1.3e-05 59_[+3]_53 chr3L:4357832-4357952 1.3e-05 68_[+3]_44 chr2L:13903938-13904058 1.3e-05 51_[+3]_61 chr3R:5182405-5182525 1.3e-05 46_[+3]_66 chr2R:8121348-8121468 1.3e-05 103_[+3]_9 chr3R:30454504-30454624 1.3e-05 28_[+3]_84 chr3R:23179432-23179552 1.3e-05 95_[+3]_17 chr3L:967989-968109 1.3e-05 57_[+3]_55 chr2L:6086836-6086956 2.3e-05 28_[+3]_84 chr3L:13315598-13315718 2.3e-05 50_[+3]_62 chr3R:31882308-31882428 2.3e-05 85_[+3]_27 chr3R:29560130-29560250 2.3e-05 24_[+3]_88 chr3L:4543982-4544102 3.6e-05 41_[+3]_71 chr2L:9526671-9526791 3.6e-05 56_[+3]_56 chrX:7228733-7228853 3.6e-05 69_[+3]_43 chr3R:29095674-29095794 4.9e-05 48_[+3]_64 chr2L:3165423-3165543 4.9e-05 42_[+3]_70 chr2L:16282193-16282313 4.9e-05 [+3]_112 chr2R:11648532-11648652 7.4e-05 23_[+3]_89 chr2L:20760257-20760377 7.4e-05 80_[+3]_32 chr3L:16490287-16490407 7.4e-05 54_[+3]_58 chr3L:2469764-2469884 7.4e-05 83_[+3]_29 chr2R:15951938-15952058 7.4e-05 101_[+3]_11 chr3L:20788115-20788235 7.4e-05 34_[+3]_78 chr3R:24301580-24301700 7.4e-05 74_[+3]_38 chr3L:8129354-8129474 7.4e-05 17_[+3]_95 chr2L:6524098-6524218 8.7e-05 65_[+3]_47 chr2L:857199-857319 9.9e-05 58_[+3]_54 chr2R:24294705-24294825 9.9e-05 31_[+3]_81 chr3L:16914240-16914360 9.9e-05 32_[+3]_80 chr2L:20000621-20000741 0.00011 53_[+3]_59 chr3R:17595219-17595339 0.00011 84_[+3]_28 chr2R:10871422-10871542 0.00011 75_[+3]_37 chr2R:17405128-17405248 0.00011 41_[+3]_71 chr2R:11646070-11646190 0.00015 97_[+3]_15 chr3R:17712984-17713104 0.00015 82_[+3]_30 chrX:2663566-2663686 0.00015 89_[+3]_23 chr3R:17404282-17404402 0.00015 65_[+3]_47 chr2R:18536186-18536306 0.00015 99_[+3]_13 chr3R:22411958-22412078 0.00015 88_[+3]_24 chr4:695971-696091 0.0002 45_[+3]_67 chr2R:21708399-21708519 0.0002 71_[+3]_41 chr3L:11272390-11272510 0.0002 70_[+3]_42 chr3R:22635885-22636005 0.0002 82_[+3]_30 chr2L:9937037-9937157 0.0002 93_[+3]_19 chr2L:5090098-5090218 0.0002 79_[+3]_33 chr3R:8654111-8654231 0.0002 35_[+3]_77 chr3R:14653427-14653547 0.00022 100_[+3]_12 chr2L:9946259-9946379 0.00022 40_[+3]_72 chr3R:4394267-4394387 0.00022 105_[+3]_7 chr3R:5295576-5295696 0.00022 44_[+3]_68 chr3R:27502072-27502192 0.00022 75_[+3]_37 chr3R:8748888-8749008 0.00022 52_[+3]_60 chr2L:14745001-14745121 0.00024 75_[+3]_37 chr2R:23359263-23359383 0.00024 102_[+3]_10 chr2R:24591135-24591255 0.00026 42_[+3]_70 chr2R:8240321-8240441 0.00026 49_[+3]_63 chr2R:16214167-16214287 0.0003 53_[+3]_59 chr3L:8696969-8697089 0.00035 99_[+3]_13 chr2R:6503131-6503251 0.00035 56_[+3]_56 chr2R:23716155-23716275 0.0004 26_[+3]_86 chr2R:11644016-11644136 0.0004 64_[+3]_48 chr3R:6344021-6344141 0.0004 110_[+3]_2 chr2R:11575669-11575789 0.00043 79_[+3]_33 chr2R:10773436-10773556 0.00043 1_[+3]_111 chr2L:1122296-1122416 0.00043 53_[+3]_59 chr2L:13467966-13468086 0.00043 56_[+3]_56 chr3L:15150186-15150306 0.00043 22_[+3]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCAGCTGC width=8 seqs=68 chr2R:21549429-21549549 ( 60) ACAGCTGC 1 chr3L:4357832-4357952 ( 69) ACAGCTGC 1 chr2L:13903938-13904058 ( 52) ACAGCTGC 1 chr3R:5182405-5182525 ( 47) ACAGCTGC 1 chr2R:8121348-8121468 ( 104) ACAGCTGC 1 chr3R:30454504-30454624 ( 29) ACAGCTGC 1 chr3R:23179432-23179552 ( 96) ACAGCTGC 1 chr3L:967989-968109 ( 58) ACAGCTGC 1 chr2L:6086836-6086956 ( 29) GCAGCTGC 1 chr3L:13315598-13315718 ( 51) GCAGCTGC 1 chr3R:31882308-31882428 ( 86) GCAGCTGC 1 chr3R:29560130-29560250 ( 25) GCAGCTGC 1 chr3L:4543982-4544102 ( 42) TCAGCTGC 1 chr2L:9526671-9526791 ( 57) TCAGCTGC 1 chrX:7228733-7228853 ( 70) TCAGCTGC 1 chr3R:29095674-29095794 ( 49) ACTGCTGC 1 chr2L:3165423-3165543 ( 43) ACTGCTGC 1 chr2L:16282193-16282313 ( 1) ACTGCTGC 1 chr2R:11648532-11648652 ( 24) ACAGCTGT 1 chr2L:20760257-20760377 ( 81) ACAGCTGT 1 chr3L:16490287-16490407 ( 55) GCTGCTGC 1 chr3L:2469764-2469884 ( 84) ACAGCTGT 1 chr2R:15951938-15952058 ( 102) GCTGCTGC 1 chr3L:20788115-20788235 ( 35) GCTGCTGC 1 chr3R:24301580-24301700 ( 75) ACAGCTGT 1 chr3L:8129354-8129474 ( 18) ACAGCTGT 1 chr2L:6524098-6524218 ( 66) GCAGCTGT 1 chr2L:857199-857319 ( 59) TCTGCTGC 1 chr2R:24294705-24294825 ( 32) TCTGCTGC 1 chr3L:16914240-16914360 ( 33) TCTGCTGC 1 chr2L:20000621-20000741 ( 54) ACAACTGC 1 chr3R:17595219-17595339 ( 85) ACAACTGC 1 chr2R:10871422-10871542 ( 76) ACAACTGC 1 chr2R:17405128-17405248 ( 42) ACAACTGC 1 chr2R:11646070-11646190 ( 98) ACAGCTGG 1 chr3R:17712984-17713104 ( 83) TCAGCTGT 1 chrX:2663566-2663686 ( 90) TCAGCTGT 1 chr3R:17404282-17404402 ( 66) TCAGCTGT 1 chr2R:18536186-18536306 ( 100) TCAGCTGT 1 chr3R:22411958-22412078 ( 89) ACAGCTCC 1 chr4:695971-696091 ( 46) ACTGCTGT 1 chr2R:21708399-21708519 ( 72) ACAGCTGA 1 chr3L:11272390-11272510 ( 71) GCAACTGC 1 chr3R:22635885-22636005 ( 83) GCAACTGC 1 chr2L:9937037-9937157 ( 94) ACTGCTGT 1 chr2L:5090098-5090218 ( 80) ACTGCTGT 1 chr3R:8654111-8654231 ( 36) ACAGCTGA 1 chr3R:14653427-14653547 ( 101) GCAGCTCC 1 chr2L:9946259-9946379 ( 41) GCAGCTGG 1 chr3R:4394267-4394387 ( 106) GCAGCTCC 1 chr3R:5295576-5295696 ( 45) GCAGCTGG 1 chr3R:27502072-27502192 ( 76) GCAGCTGG 1 chr3R:8748888-8749008 ( 53) GCAGCTCC 1 chr2L:14745001-14745121 ( 76) GCAGCTGA 1 chr2R:23359263-23359383 ( 103) GCAGCTGA 1 chr2R:24591135-24591255 ( 43) TCAACTGC 1 chr2R:8240321-8240441 ( 50) TCAACTGC 1 chr2R:16214167-16214287 ( 54) TCAGCTGG 1 chr3L:8696969-8697089 ( 100) ACTGCTGG 1 chr2R:6503131-6503251 ( 57) TCAGCTGA 1 chr2R:23716155-23716275 ( 27) ACAACTGT 1 chr2R:11644016-11644136 ( 65) ACTGCTGA 1 chr3R:6344021-6344141 ( 111) GCTACTGC 1 chr2R:11575669-11575789 ( 80) GCTGCTCC 1 chr2R:10773436-10773556 ( 2) GCTGCTCC 1 chr2L:1122296-1122416 ( 54) GCTGCTCC 1 chr2L:13467966-13468086 ( 57) ACAGCTCT 1 chr3L:15150186-15150306 ( 23) ACAGCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7147 E= 1.1e-007 79 -1273 49 -39 -1273 213 -1273 -1273 144 -1273 -1273 -2 -88 -1273 189 -1273 -1273 213 -1273 -1273 -1273 -1273 -1273 189 -1273 -79 191 -1273 -162 136 -139 -19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 1.1e-007 0.470588 0.000000 0.323529 0.205882 0.000000 1.000000 0.000000 0.000000 0.735294 0.000000 0.000000 0.264706 0.147059 0.000000 0.852941 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.132353 0.867647 0.000000 0.088235 0.588235 0.088235 0.235294 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGC MEME-3 regular expression -------------------------------------------------------------------------------- [AGT]C[AT]GCTG[CT] -------------------------------------------------------------------------------- Time 19.77 secs. ******************************************************************************** ******************************************************************************** MOTIF CACCTGTG MEME-4 width = 8 sites = 7 llr = 76 E-value = 1.6e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACCTGTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a::1::: pos.-specific C a:aa:::: probability G :::::a:a matrix T ::::9:a: bits 2.1 * ** * * 1.9 **** *** 1.7 **** *** 1.5 **** *** Relative 1.3 ******** Entropy 1.1 ******** (15.7 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACCTGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCTGTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:14164426-14164546 62 1.26e-05 GATATAGACA CACCTGTG CAATCGCCAG chr2L:3165423-3165543 73 1.26e-05 TACCCCCGCT CACCTGTG TTTTCTCACC chr2L:18981638-18981758 53 1.26e-05 ACCAAACATG CACCTGTG CACATGGCCT chr3R:22411958-22412078 78 1.26e-05 ACAATTTTTT CACCTGTG TTAACAGCTC chr2R:24616149-24616269 48 1.26e-05 GCCAGCGCGT CACCTGTG CAAATAGAAA chr3L:3442899-3443019 62 1.26e-05 ATAACCGCAC CACCTGTG TCAACAATGA chr2L:480659-480779 62 2.52e-05 TCTTATTCAC CACCAGTG AATGCATGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCTGTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14164426-14164546 1.3e-05 61_[+4]_51 chr2L:3165423-3165543 1.3e-05 72_[+4]_40 chr2L:18981638-18981758 1.3e-05 52_[+4]_60 chr3R:22411958-22412078 1.3e-05 77_[+4]_35 chr2R:24616149-24616269 1.3e-05 47_[+4]_65 chr3L:3442899-3443019 1.3e-05 61_[+4]_51 chr2L:480659-480779 2.5e-05 61_[+4]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCTGTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACCTGTG width=8 seqs=7 chr3L:14164426-14164546 ( 62) CACCTGTG 1 chr2L:3165423-3165543 ( 73) CACCTGTG 1 chr2L:18981638-18981758 ( 53) CACCTGTG 1 chr3R:22411958-22412078 ( 78) CACCTGTG 1 chr2R:24616149-24616269 ( 48) CACCTGTG 1 chr3L:3442899-3443019 ( 62) CACCTGTG 1 chr2L:480659-480779 ( 62) CACCAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCTGTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9574 E= 1.6e+005 -945 213 -945 -945 188 -945 -945 -945 -945 213 -945 -945 -945 213 -945 -945 -92 -945 -945 167 -945 -945 211 -945 -945 -945 -945 189 -945 -945 211 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCTGTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.6e+005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCTGTG MEME-4 regular expression -------------------------------------------------------------------------------- CACCTGTG -------------------------------------------------------------------------------- Time 25.38 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTYCTCC MEME-5 width = 8 sites = 7 llr = 75 E-value = 3.2e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTYCTCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:6a:aa probability G a::::::: matrix T ::a4:a:: bits 2.1 ** * ** 1.9 *** **** 1.7 *** **** 1.5 *** **** Relative 1.3 *** **** Entropy 1.1 ******** (15.5 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTCCTCC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTYCTCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15071281-15071401 95 1.05e-05 GAGCTACAGC GCTCCTCC TTCTCCCCCC chr2L:3781034-3781154 26 1.05e-05 TTCCTTTGGG GCTCCTCC ACCAGCATTA chr2R:10773436-10773556 24 1.05e-05 CCCATCCTCT GCTCCTCC ATTGTGTGCA chr3L:12409423-12409543 4 1.05e-05 TTA GCTCCTCC GCGCCTGGAT chr2L:8411586-8411706 28 2.29e-05 CTGACTGACA GCTTCTCC TTCTCTCGCA chr3R:17712984-17713104 46 2.29e-05 ttcttcttct gcttctcc tACCCCAAAA chr2R:21382972-21383092 72 2.29e-05 CGGCACTGTG GCTTCTCC GTTTTGTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTYCTCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15071281-15071401 1.1e-05 94_[+5]_18 chr2L:3781034-3781154 1.1e-05 25_[+5]_87 chr2R:10773436-10773556 1.1e-05 23_[+5]_89 chr3L:12409423-12409543 1.1e-05 3_[+5]_109 chr2L:8411586-8411706 2.3e-05 27_[+5]_85 chr3R:17712984-17713104 2.3e-05 45_[+5]_67 chr2R:21382972-21383092 2.3e-05 71_[+5]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTYCTCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTYCTCC width=8 seqs=7 chrX:15071281-15071401 ( 95) GCTCCTCC 1 chr2L:3781034-3781154 ( 26) GCTCCTCC 1 chr2R:10773436-10773556 ( 24) GCTCCTCC 1 chr3L:12409423-12409543 ( 4) GCTCCTCC 1 chr2L:8411586-8411706 ( 28) GCTTCTCC 1 chr3R:17712984-17713104 ( 46) GCTTCTCC 1 chr2R:21382972-21383092 ( 72) GCTTCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTYCTCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 3.2e+005 -945 -945 211 -945 -945 213 -945 -945 -945 -945 -945 189 -945 132 -945 67 -945 213 -945 -945 -945 -945 -945 189 -945 213 -945 -945 -945 213 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTYCTCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.2e+005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.571429 0.000000 0.428571 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTYCTCC MEME-5 regular expression -------------------------------------------------------------------------------- GCT[CT]CTCC -------------------------------------------------------------------------------- Time 30.98 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3442899-3443019 6.85e-04 61_[+4(1.26e-05)]_51 chr3L:967989-968109 3.98e-02 57_[+3(1.27e-05)]_55 chr2R:18168291-18168411 7.34e-02 120 chr3L:1022344-1022464 7.25e-02 24_[+1(5.76e-05)]_55_[+1(3.74e-05)]_\ 25 chr3R:8067157-8067277 7.72e-02 120 chr3L:8129354-8129474 6.27e-03 17_[+3(7.42e-05)]_95 chr3R:9625587-9625707 2.92e-01 43_[+2(7.43e-05)]_69 chr3L:15150186-15150306 5.91e-02 120 chrX:7699972-7700092 5.03e-02 58_[+1(3.74e-05)]_54 chr3L:6614123-6614243 5.13e-02 120 chr3R:21260932-21261052 5.91e-02 120 chrX:17121821-17121941 3.19e-03 120 chr3R:8748888-8749008 1.27e-02 28_[+1(9.86e-05)]_84 chr2L:13467966-13468086 7.58e-03 120 chr3L:13924780-13924900 2.05e-02 50_[+2(1.77e-05)]_62 chr2R:6503131-6503251 4.19e-02 120 chr3R:5454468-5454588 4.43e-04 40_[+1(5.76e-05)]_4_[+1(1.72e-05)]_\ 8_[+1(1.72e-05)]_44 chr2L:4937195-4937315 1.97e-01 120 chr3R:23179432-23179552 8.55e-03 95_[+3(1.27e-05)]_17 chr2R:18619464-18619584 6.67e-02 66_[+1(1.72e-05)]_46 chr3R:27502072-27502192 3.28e-03 120 chr2L:13807305-13807425 1.44e-01 120 chr2R:15784610-15784730 2.92e-02 120 chr2R:23522579-23522699 1.45e-01 120 chr3L:16914240-16914360 7.31e-04 35_[+5(4.60e-05)]_15_[+2(7.43e-05)]_\ 13_[+2(7.43e-05)]_33 chrX:1595825-1595945 4.34e-01 120 chr2R:24616149-24616269 2.98e-05 47_[+4(1.26e-05)]_37_[+1(3.74e-05)]_\ 20 chr3R:8654111-8654231 9.90e-03 120 chr3R:15468506-15468626 2.15e-01 120 chr2L:5090098-5090218 1.07e-02 120 chr3L:137040-137160 2.79e-01 120 chr3L:4120465-4120585 4.26e-02 120 chr2R:16845511-16845631 4.96e-02 120 chr3R:31878423-31878543 5.98e-02 62_[+2(9.52e-05)]_50 chr2L:16318395-16318515 2.67e-01 120 chr2L:5975269-5975389 4.25e-02 90_[+2(7.43e-05)]_22 chr2L:9937037-9937157 4.56e-02 120 chr3L:12409423-12409543 1.66e-05 3_[+5(1.05e-05)]_36_[+1(3.74e-05)]_\ 65 chr3R:6344021-6344141 1.66e-01 120 chr3R:14730738-14730858 9.19e-01 120 chr3R:20766208-20766328 1.97e-01 120 chr2L:2361739-2361859 1.20e-01 120 chr2R:17405128-17405248 5.03e-03 120 chr2L:20881840-20881960 8.40e-02 120 chrX:7228733-7228853 2.35e-02 69_[+3(3.60e-05)]_43 chr2R:19303951-19304071 9.71e-02 120 chr3L:17650823-17650943 1.11e-01 120 chr2R:21382972-21383092 1.14e-03 71_[+5(2.29e-05)]_41 chr2L:6524098-6524218 1.22e-01 65_[+3(8.68e-05)]_47 chr3R:30454504-30454624 3.34e-04 28_[+3(1.27e-05)]_84 chrX:15501978-15502098 1.18e-01 120 chr3L:15762626-15762746 6.21e-02 120 chr2L:9707660-9707780 6.16e-02 120 chr3R:5295576-5295696 1.92e-03 52_[+2(7.43e-05)]_60 chr2L:9783250-9783370 1.02e-02 120 chr3L:21254567-21254687 4.72e-02 120 chr3R:4236632-4236752 9.63e-03 120 chr3L:15637767-15637887 2.73e-03 46_[+1(5.76e-05)]_40_[+2(1.77e-05)]_\ 18 chr2R:8121348-8121468 3.07e-02 103_[+3(1.27e-05)]_9 chr2R:10871422-10871542 2.85e-02 120 chr3L:17002244-17002364 9.35e-01 120 chr2L:1122296-1122416 2.11e-04 44_[+2(1.77e-05)]_1_[+5(4.60e-05)]_\ 59 chr3R:17595219-17595339 5.95e-04 20_[+1(1.72e-05)]_92 chr3R:22411958-22412078 2.37e-05 40_[+1(1.72e-05)]_29_[+4(1.26e-05)]_\ 35 chr2R:22135199-22135319 8.33e-02 120 chr3R:29560130-29560250 5.29e-02 24_[+3(2.35e-05)]_88 chr2L:18625131-18625251 2.07e-01 120 chr2L:5532182-5532302 5.65e-01 120 chr2L:18981638-18981758 6.41e-04 52_[+4(1.26e-05)]_12_[+2(7.43e-05)]_\ 40 chr2L:16282193-16282313 4.65e-02 [+3(4.86e-05)]_68_[+3(7.42e-05)]_36 chr3R:5182405-5182525 1.58e-03 46_[+3(1.27e-05)]_[+2(9.52e-05)]_58 chr2R:8683525-8683645 3.12e-03 46_[+1(1.72e-05)]_66 chr3R:22635885-22636005 1.79e-02 120 chr2R:23359263-23359383 7.40e-03 45_[+1(3.74e-05)]_67 chr2L:6087817-6087937 1.55e-01 120 chr2L:9526671-9526791 1.33e-02 56_[+3(3.60e-05)]_56 chr2L:11046201-11046321 6.22e-02 120 chr2L:480659-480779 1.39e-02 61_[+4(2.52e-05)]_51 chr2L:13903938-13904058 1.56e-03 51_[+3(1.27e-05)]_61 chr2R:18536186-18536306 3.71e-03 120 chrX:17183621-17183741 6.88e-02 120 chr2L:6464910-6465030 2.50e-02 6_[+1(5.76e-05)]_34_[+1(1.72e-05)]_\ 64 chr3R:24301580-24301700 5.67e-02 74_[+3(7.42e-05)]_38 chr3R:29866798-29866918 2.07e-01 120 chr2L:301044-301164 2.95e-01 120 chrX:1618129-1618249 1.05e-01 120 chr3R:24039297-24039417 5.18e-01 120 chr3L:12080499-12080619 1.45e-02 120 chr2L:18864241-18864361 1.77e-02 77_[+2(7.43e-05)]_35 chr3R:4394267-4394387 8.98e-02 120 chrX:2221004-2221124 8.29e-01 120 chr3R:25280097-25280217 9.77e-03 47_[+2(1.77e-05)]_7_[+1(9.86e-05)]_\ 50 chr3R:22057246-22057366 3.62e-01 120 chr3L:22826319-22826439 1.09e-01 120 chr2R:22740362-22740482 2.26e-01 120 chr2R:24294705-24294825 3.09e-02 31_[+3(9.93e-05)]_81 chr2R:11644016-11644136 2.10e-03 49_[+1(3.74e-05)]_63 chr2R:9148687-9148807 4.72e-01 120 chr2R:18304950-18305070 8.78e-01 120 chr3L:11272390-11272510 1.51e-02 120 chr2L:857199-857319 8.29e-04 6_[+1(5.76e-05)]_44_[+3(9.93e-05)]_\ 54 chr2R:22324193-22324313 6.78e-03 12_[+1(3.74e-05)]_54_[+2(7.43e-05)]_\ 38 chr2L:18678035-18678155 7.26e-02 120 chr2L:14743489-14743609 5.74e-01 120 chr2L:7954704-7954824 1.60e-02 76_[+2(1.77e-05)]_36 chr3L:3209035-3209155 2.70e-03 120 chr2R:13464199-13464319 2.52e-01 120 chr3L:20788115-20788235 1.87e-02 34_[+3(7.42e-05)]_78 chr2L:12013312-12013432 2.48e-02 23_[+2(9.52e-05)]_89 chr3L:11252801-11252921 4.72e-01 120 chr3R:17404282-17404402 2.27e-02 120 chr2R:15951938-15952058 1.03e-02 98_[+3(7.42e-05)]_14 chr2L:5253922-5254042 1.26e-01 120 chr2L:6453581-6453701 2.18e-02 84_[+1(3.74e-05)]_28 chr2R:22525227-22525347 6.75e-03 10_[+2(1.77e-05)]_86_[+2(1.77e-05)]_\ 8 chr3R:31882308-31882428 2.14e-03 85_[+3(2.35e-05)]_27 chr2L:3165423-3165543 1.02e-05 42_[+3(4.86e-05)]_[+3(7.42e-05)]_14_\ [+4(1.26e-05)]_40 chr3L:13923957-13924077 2.60e-01 72_[+1(9.86e-05)]_40 chr2L:13808092-13808212 1.88e-03 7_[+1(9.86e-05)]_105 chr3R:14474824-14474944 4.79e-01 120 chr3L:4367463-4367583 6.35e-01 120 chr3L:4357832-4357952 1.47e-03 40_[+1(9.86e-05)]_20_[+3(1.27e-05)]_\ 44 chr2R:10773436-10773556 1.70e-03 1_[+5(4.60e-05)]_14_[+5(1.05e-05)]_\ 89 chr3R:8726764-8726884 1.08e-01 120 chrX:21377486-21377606 1.92e-01 120 chr2L:9946259-9946379 1.04e-02 69_[+3(8.68e-05)]_43 chr2L:5904705-5904825 1.18e-01 120 chr2L:20000621-20000741 2.10e-03 120 chrX:1828121-1828241 8.30e-03 120 chr2R:9078772-9078892 4.49e-01 120 chrX:7228236-7228356 1.23e-01 120 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chr3L:3251072-3251192 7.77e-01 120 chr4:695971-696091 3.89e-02 120 chr2R:14024787-14024907 6.91e-01 120 chr2L:18561807-18561927 4.54e-02 120 chr3L:4220813-4220933 2.42e-01 120 chr2R:11648532-11648652 3.13e-02 23_[+3(7.42e-05)]_89 chr3L:8985257-8985377 2.16e-02 83_[+2(7.43e-05)]_29 chr3R:18398623-18398743 1.06e-01 120 chr2R:23983023-23983143 8.20e-01 120 chrX:15071281-15071401 9.90e-02 94_[+5(1.05e-05)]_18 chr3R:17059111-17059231 6.79e-02 120 chr2L:4119538-4119658 1.82e-01 120 chrX:6546059-6546179 7.74e-01 120 chr3L:14978601-14978721 6.02e-04 82_[+4(2.52e-05)]_30 chr2R:7282533-7282653 1.46e-01 120 chr3L:17978085-17978205 6.89e-01 120 chr2L:16255766-16255886 6.70e-01 120 chr3R:14653427-14653547 1.83e-01 120 chr2R:24987009-24987129 6.70e-01 120 chr2R:11106734-11106854 6.82e-01 120 chr2R:18346151-18346271 3.04e-03 120 chr2R:7512688-7512808 2.84e-01 120 chr2L:3479745-3479865 4.75e-01 120 chr2R:22896190-22896310 5.66e-01 120 chrX:18647555-18647675 7.55e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************