******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hr51.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:15329369-15329489 1.0000 120 chr2R:21323925-21324045 1.0000 120 chr2R:12173442-12173562 1.0000 120 chr3L:15999774-15999894 1.0000 120 chr2R:15330926-15331046 1.0000 120 chrX:16781241-16781361 1.0000 120 chr3R:20276241-20276361 1.0000 120 chr2R:7510121-7510241 1.0000 120 chr2R:24963943-24964063 1.0000 120 chr2L:2873419-2873539 1.0000 120 chr2R:25011264-25011384 1.0000 120 chr2L:2731427-2731547 1.0000 120 chr3R:4381246-4381366 1.0000 120 chr2R:10899184-10899304 1.0000 120 chr2R:15322143-15322263 1.0000 120 chr2L:15039371-15039491 1.0000 120 chr3R:17526288-17526408 1.0000 120 chr2R:23997299-23997419 1.0000 120 chr2R:16202880-16203000 1.0000 120 chrX:10086280-10086400 1.0000 120 chr2R:11192640-11192760 1.0000 120 chr2R:6133337-6133457 1.0000 120 chr2R:20330776-20330896 1.0000 120 chr3L:5603978-5604098 1.0000 120 chr3R:12350621-12350741 1.0000 120 chr3R:30802328-30802448 1.0000 120 chr3L:11833402-11833522 1.0000 120 chr2R:7636649-7636769 1.0000 120 chr2R:15326215-15326335 1.0000 120 chr3R:11628517-11628637 1.0000 120 chr2R:15735461-15735581 1.0000 120 chr2L:3748882-3749002 1.0000 120 chr3R:18296236-18296356 1.0000 120 chr2R:10437347-10437467 1.0000 120 chrX:3811666-3811786 1.0000 120 chrX:10325970-10326090 1.0000 120 chrX:10348202-10348322 1.0000 120 chr2R:21514474-21514594 1.0000 120 chr3L:10862008-10862128 1.0000 120 chr3R:31053973-31054093 1.0000 120 chr2R:25183145-25183265 1.0000 120 chr3L:1463776-1463896 1.0000 120 chrX:5082963-5083083 1.0000 120 chr2R:7076992-7077112 1.0000 120 chr2R:12586909-12587029 1.0000 120 chr2R:9087748-9087868 1.0000 120 chrX:16385954-16386074 1.0000 120 chr2R:17564766-17564886 1.0000 120 chrX:10473629-10473749 1.0000 120 chrX:6091207-6091327 1.0000 120 chr2L:11203784-11203904 1.0000 120 chr2R:9692715-9692835 1.0000 120 chr3R:20735525-20735645 1.0000 120 chr2L:6179121-6179241 1.0000 120 chr2R:9109665-9109785 1.0000 120 chrX:19494395-19494515 1.0000 120 chrX:8560428-8560548 1.0000 120 chr3L:14972823-14972943 1.0000 120 chr2R:18140715-18140835 1.0000 120 chr2L:16251959-16252079 1.0000 120 chr3R:31221098-31221218 1.0000 120 chr2R:21295601-21295721 1.0000 120 chr2R:24132857-24132977 1.0000 120 chr2L:2753236-2753356 1.0000 120 chr3L:630126-630246 1.0000 120 chr3R:31311036-31311156 1.0000 120 chr3L:1568762-1568882 1.0000 120 chrX:2159007-2159127 1.0000 120 chr3R:18399629-18399749 1.0000 120 chr3R:22041832-22041952 1.0000 120 chrX:13253270-13253390 1.0000 120 chr2L:16647818-16647938 1.0000 120 chrX:8141490-8141610 1.0000 120 chr3L:21317996-21318116 1.0000 120 chr3L:21196754-21196874 1.0000 120 chr2L:15060677-15060797 1.0000 120 chr2R:22450428-22450548 1.0000 120 chr3L:8604454-8604574 1.0000 120 chr3L:8912390-8912510 1.0000 120 chr2R:15754387-15754507 1.0000 120 chrX:17176685-17176805 1.0000 120 chr3L:16955388-16955508 1.0000 120 chr2R:17091801-17091921 1.0000 120 chr2R:23942315-23942435 1.0000 120 chrX:1517691-1517811 1.0000 120 chr3R:21377377-21377497 1.0000 120 chr3L:7335199-7335319 1.0000 120 chr3R:10626083-10626203 1.0000 120 chr2L:10767958-10768078 1.0000 120 chrX:5671796-5671916 1.0000 120 chr3L:4353858-4353978 1.0000 120 chr3L:15098090-15098210 1.0000 120 chr3R:25885282-25885402 1.0000 120 chr3R:5251687-5251807 1.0000 120 chr3R:16263995-16264115 1.0000 120 chr3R:26280452-26280572 1.0000 120 chrX:4322554-4322674 1.0000 120 chr2R:18158173-18158293 1.0000 120 chr2L:1716014-1716134 1.0000 120 chr3L:10691032-10691152 1.0000 120 chr2R:13586370-13586490 1.0000 120 chr2L:1980760-1980880 1.0000 120 chrX:3845779-3845899 1.0000 120 chr3L:14672801-14672921 1.0000 120 chrX:9137333-9137453 1.0000 120 chr3R:10350069-10350189 1.0000 120 chr3R:31744171-31744291 1.0000 120 chr3L:5654657-5654777 1.0000 120 chr2R:10854226-10854346 1.0000 120 chr3L:11074676-11074796 1.0000 120 chr2R:24046779-24046899 1.0000 120 chr2R:16571768-16571888 1.0000 120 chr3L:17659336-17659456 1.0000 120 chr3R:21850175-21850295 1.0000 120 chr3R:31060335-31060455 1.0000 120 chr2R:16150965-16151085 1.0000 120 chr3L:13486724-13486844 1.0000 120 chr2L:21260942-21261062 1.0000 120 chr3L:20785162-20785282 1.0000 120 chr3L:21517082-21517202 1.0000 120 chr2R:10066658-10066778 1.0000 120 chr2R:23551253-23551373 1.0000 120 chr2R:11809530-11809650 1.0000 120 chrX:7710926-7711046 1.0000 120 chrX:3719790-3719910 1.0000 120 chr3L:8525181-8525301 1.0000 120 chr3R:11735518-11735638 1.0000 120 chr2R:23574937-23575057 1.0000 120 chr2L:12010157-12010277 1.0000 120 chr2R:7699147-7699267 1.0000 120 chr2R:9989048-9989168 1.0000 120 chr3R:6008479-6008599 1.0000 120 chr3L:13922355-13922475 1.0000 120 chrX:11548932-11549052 1.0000 120 chrX:13755334-13755454 1.0000 120 chr2R:21183229-21183349 1.0000 120 chr2R:21060639-21060759 1.0000 120 chr3L:3770997-3771117 1.0000 120 chrX:21373899-21374019 1.0000 120 chr3L:6743120-6743240 1.0000 120 chr2R:20601135-20601255 1.0000 120 chr2R:8615310-8615430 1.0000 120 chr2L:5055098-5055218 1.0000 120 chr2L:19140972-19141092 1.0000 120 chr2L:3852264-3852384 1.0000 120 chr2L:901575-901695 1.0000 120 chr3L:20944340-20944460 1.0000 120 chr3R:8984766-8984886 1.0000 120 chr2R:19275611-19275731 1.0000 120 chrX:6695096-6695216 1.0000 120 chr3L:15968011-15968131 1.0000 120 chr2L:21156224-21156344 1.0000 120 chr3R:22147639-22147759 1.0000 120 chrX:19852054-19852174 1.0000 120 chr2L:20918857-20918977 1.0000 120 chr2L:4441011-4441131 1.0000 120 chr2R:22700898-22701018 1.0000 120 chrX:21117040-21117160 1.0000 120 chr3R:22547772-22547892 1.0000 120 chr2R:10558994-10559114 1.0000 120 chr3R:27273623-27273743 1.0000 120 chrX:5420847-5420967 1.0000 120 chr3L:13114216-13114336 1.0000 120 chrX:11451103-11451223 1.0000 120 chr3R:8564025-8564145 1.0000 120 chr3R:23921281-23921401 1.0000 120 chr3R:4319609-4319729 1.0000 120 chr2R:16178582-16178702 1.0000 120 chrX:3968852-3968972 1.0000 120 chr2R:13055021-13055141 1.0000 120 chr2R:22669359-22669479 1.0000 120 chr2L:3861506-3861626 1.0000 120 chr2R:19357534-19357654 1.0000 120 chr2L:6907823-6907943 1.0000 120 chr3R:18298327-18298447 1.0000 120 chrX:11854951-11855071 1.0000 120 chr2R:13171408-13171528 1.0000 120 chr3L:8110399-8110519 1.0000 120 chr2R:7916495-7916615 1.0000 120 chr2R:14981168-14981288 1.0000 120 chr2L:20093996-20094116 1.0000 120 chr3L:16571454-16571574 1.0000 120 chr3R:30052571-30052691 1.0000 120 chr2R:11095281-11095401 1.0000 120 chr3L:1647425-1647545 1.0000 120 chr2L:21215058-21215178 1.0000 120 chr3L:21841287-21841407 1.0000 120 chr3L:21484096-21484216 1.0000 120 chrX:6590784-6590904 1.0000 120 chr3L:9435499-9435619 1.0000 120 chr3L:14956437-14956557 1.0000 120 chr3L:1352169-1352289 1.0000 120 chr2L:6797553-6797673 1.0000 120 chr3L:18673140-18673260 1.0000 120 chr2R:12772720-12772840 1.0000 120 chr3L:7360427-7360547 1.0000 120 chr2L:220713-220833 1.0000 120 chr3L:20771123-20771243 1.0000 120 chr2L:10565736-10565856 1.0000 120 chr3R:14741458-14741578 1.0000 120 chr2L:4847296-4847416 1.0000 120 chr3R:5368259-5368379 1.0000 120 chr3L:3239572-3239692 1.0000 120 chr2R:22375058-22375178 1.0000 120 chr3L:18822529-18822649 1.0000 120 chr2R:14906617-14906737 1.0000 120 chr2R:9971145-9971265 1.0000 120 chr2L:11970971-11971091 1.0000 120 chr3L:12336378-12336498 1.0000 120 chrX:3068433-3068553 1.0000 120 chr2L:277282-277402 1.0000 120 chr2L:3042195-3042315 1.0000 120 chr3L:10899305-10899425 1.0000 120 chr2L:7307042-7307162 1.0000 120 chr2R:23577406-23577526 1.0000 120 chr3R:15250705-15250825 1.0000 120 chr3L:613694-613814 1.0000 120 chrX:9356476-9356596 1.0000 120 chrX:16967543-16967663 1.0000 120 chrX:18635395-18635515 1.0000 120 chr2L:1473514-1473634 1.0000 120 chrX:15384037-15384157 1.0000 120 chrX:5901911-5902031 1.0000 120 chrX:4530099-4530219 1.0000 120 chr3L:1295839-1295959 1.0000 120 chr3R:8181535-8181655 1.0000 120 chr3R:23225509-23225629 1.0000 120 chr3L:4379038-4379158 1.0000 120 chr3R:5742379-5742499 1.0000 120 chr3L:15563023-15563143 1.0000 120 chr3R:5591502-5591622 1.0000 120 chr2L:13445577-13445697 1.0000 120 chr2L:1077872-1077992 1.0000 120 chr3L:5857059-5857179 1.0000 120 chr3R:19024033-19024153 1.0000 120 chr2L:7033467-7033587 1.0000 120 chrX:7333364-7333484 1.0000 120 chr3R:4220908-4221028 1.0000 120 chrX:6037359-6037479 1.0000 120 chr3L:292260-292380 1.0000 120 chrX:17751802-17751922 1.0000 120 chr2R:19228944-19229064 1.0000 120 chr2R:15330703-15330823 1.0000 120 chr3R:30195708-30195828 1.0000 120 chr2R:8649406-8649526 1.0000 120 chrX:16422786-16422906 1.0000 120 chr2L:16703806-16703926 1.0000 120 chr2R:23856885-23857005 1.0000 120 chr2R:11427838-11427958 1.0000 120 chr2L:17963239-17963359 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Hr51/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hr51.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.289 C 0.22 G 0.216 T 0.275 Background letter frequencies (from file dataset with add-one prior applied): A 0.289 C 0.22 G 0.216 T 0.275 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-1 width = 8 sites = 38 llr = 350 E-value = 3.7e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3a:::a:7 pos.-specific C 1::a:::: probability G ::::a::3 matrix T 6:a:::a: bits 2.2 ** 2.0 ** 1.8 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ******* (13.3 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:17963239-17963359 109 2.39e-05 CAGAACTGCT TATCGATA GGCA chr2R:23856885-23857005 43 2.39e-05 AGGCGATACT TATCGATA GCTTTGCTAT chr3L:18822529-18822649 36 2.39e-05 ATAATCGAAA TATCGATA TCTTCGGCCC chr3L:7360427-7360547 93 2.39e-05 GCCTCCCGCC TATCGATA GCCGTGCAAT chrX:6590784-6590904 51 2.39e-05 CAGCAGTGTC TATCGATA GGACCAGCTG chrX:11854951-11855071 12 2.39e-05 TTAAGCAATG TATCGATA TAGCCCACAT chr3R:4319609-4319729 11 2.39e-05 GAGCAGCAGG TATCGATA ATCGCAACAA chr2R:22700898-22701018 107 2.39e-05 GGAATCGATA TATCGATA TATTTT chrX:21373899-21374019 5 2.39e-05 TTCG TATCGATA TATTTCTCCA chr3L:8525181-8525301 92 2.39e-05 CCCTACCGCC TATCGATA ATTGTTATAA chr3R:5251687-5251807 107 2.39e-05 GCTCGGTAAG TATCGATA GCCTTG chr3R:21377377-21377497 71 2.39e-05 AGTGACAATA TATCGATA GCTTAAAATA chr3R:20735525-20735645 37 2.39e-05 AAGGAATTCT TATCGATA TGTGGCGCTG chr2R:9087748-9087868 64 2.39e-05 ATTAAAAACG TATCGATA GTTATATACC chr3R:12350621-12350741 69 2.39e-05 AAGCGATAGG TATCGATA GCGAGGTCAG chr3R:4220908-4221028 21 4.17e-05 CAGCGCCACA TATCGATG GTGAGCCAGG chr3R:5742379-5742499 81 4.17e-05 AACGCGTTAT TATCGATG AGCATGCCGC chr3L:18673140-18673260 49 4.17e-05 CGTTCGATAG TATCGATG CCGCTTGGGC chr3L:13486724-13486844 57 4.17e-05 GCTGAGCAAA TATCGATG TGAATACAGA chr2R:16571768-16571888 23 4.17e-05 TGTTCGATTT TATCGATG TTTCCAACCA chr2L:1980760-1980880 9 4.17e-05 TATCGAAC TATCGATG GGCGATAGGC chr2L:10767958-10768078 48 4.17e-05 CTTAGCGAAC TATCGATG TTCGGCTTCT chr3R:4381246-4381366 24 4.17e-05 CGACTATGCA TATCGATG CCTCTATCGC chr2L:1077872-1077992 46 6.68e-05 CACGCTAAAG AATCGATA TGTACATCGA chr3L:15563023-15563143 65 6.68e-05 GTCGCATAGT AATCGATA AGTTTTAAAT chr2L:20918857-20918977 106 6.68e-05 TAGCTCTTGC AATCGATA GCTCGAT chr2R:9989048-9989168 65 6.68e-05 CGCAGCGTGT AATCGATA TTTTCTAAGC chr3L:16955388-16955508 46 6.68e-05 CTGTAAAAAT AATCGATA TCTGGCACAA chr3L:21317996-21318116 30 6.68e-05 TCATGTAAAC AATCGATA GTGCTGCGAG chr2R:18140715-18140835 22 6.68e-05 AGTGGGATTT AATCGATA CTTTGTGGGG chr2R:10437347-10437467 49 6.68e-05 AGTTAAGTAT AATCGATA GATTCCTGCT chrX:5420847-5420967 50 8.58e-05 TGCCCACGCT CATCGATA GGTATCGATT chr2R:21183229-21183349 42 8.58e-05 TGTTTTGATG CATCGATA ACAACAAAAA chrX:8560428-8560548 97 8.58e-05 ATTTGGATGT CATCGATA TTTTGTAATA chr2L:21156224-21156344 64 1.05e-04 TAAATCGATT AATCGATG CTTGCGCACA chr2R:23551253-23551373 32 1.05e-04 GATGGCCACC AATCGATG ATTAGTGCTA chr3L:6743120-6743240 72 1.19e-04 ACACGCCAGC CATCGATG GTTCACTAGA chr3L:5603978-5604098 12 1.19e-04 ACATCGATGT CATCGATG TTTTCGAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:17963239-17963359 2.4e-05 108_[+1]_4 chr2R:23856885-23857005 2.4e-05 42_[+1]_70 chr3L:18822529-18822649 2.4e-05 35_[+1]_77 chr3L:7360427-7360547 2.4e-05 92_[+1]_20 chrX:6590784-6590904 2.4e-05 50_[+1]_62 chrX:11854951-11855071 2.4e-05 11_[+1]_101 chr3R:4319609-4319729 2.4e-05 10_[+1]_102 chr2R:22700898-22701018 2.4e-05 106_[+1]_6 chrX:21373899-21374019 2.4e-05 4_[+1]_108 chr3L:8525181-8525301 2.4e-05 91_[+1]_21 chr3R:5251687-5251807 2.4e-05 106_[+1]_6 chr3R:21377377-21377497 2.4e-05 70_[+1]_42 chr3R:20735525-20735645 2.4e-05 36_[+1]_76 chr2R:9087748-9087868 2.4e-05 63_[+1]_49 chr3R:12350621-12350741 2.4e-05 68_[+1]_44 chr3R:4220908-4221028 4.2e-05 20_[+1]_92 chr3R:5742379-5742499 4.2e-05 80_[+1]_32 chr3L:18673140-18673260 4.2e-05 48_[+1]_64 chr3L:13486724-13486844 4.2e-05 56_[+1]_56 chr2R:16571768-16571888 4.2e-05 22_[+1]_90 chr2L:1980760-1980880 4.2e-05 8_[+1]_104 chr2L:10767958-10768078 4.2e-05 47_[+1]_65 chr3R:4381246-4381366 4.2e-05 23_[+1]_89 chr2L:1077872-1077992 6.7e-05 45_[+1]_67 chr3L:15563023-15563143 6.7e-05 64_[+1]_48 chr2L:20918857-20918977 6.7e-05 105_[+1]_7 chr2R:9989048-9989168 6.7e-05 64_[+1]_48 chr3L:16955388-16955508 6.7e-05 45_[+1]_67 chr3L:21317996-21318116 6.7e-05 29_[+1]_83 chr2R:18140715-18140835 6.7e-05 21_[+1]_91 chr2R:10437347-10437467 6.7e-05 48_[+1]_64 chrX:5420847-5420967 8.6e-05 49_[+1]_63 chr2R:21183229-21183349 8.6e-05 41_[+1]_71 chrX:8560428-8560548 8.6e-05 96_[+1]_16 chr2L:21156224-21156344 0.0001 63_[+1]_49 chr2R:23551253-23551373 0.0001 31_[+1]_81 chr3L:6743120-6743240 0.00012 71_[+1]_41 chr3L:5603978-5604098 0.00012 11_[+1]_101 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=38 chr2L:17963239-17963359 ( 109) TATCGATA 1 chr2R:23856885-23857005 ( 43) TATCGATA 1 chr3L:18822529-18822649 ( 36) TATCGATA 1 chr3L:7360427-7360547 ( 93) TATCGATA 1 chrX:6590784-6590904 ( 51) TATCGATA 1 chrX:11854951-11855071 ( 12) TATCGATA 1 chr3R:4319609-4319729 ( 11) TATCGATA 1 chr2R:22700898-22701018 ( 107) TATCGATA 1 chrX:21373899-21374019 ( 5) TATCGATA 1 chr3L:8525181-8525301 ( 92) TATCGATA 1 chr3R:5251687-5251807 ( 107) TATCGATA 1 chr3R:21377377-21377497 ( 71) TATCGATA 1 chr3R:20735525-20735645 ( 37) TATCGATA 1 chr2R:9087748-9087868 ( 64) TATCGATA 1 chr3R:12350621-12350741 ( 69) TATCGATA 1 chr3R:4220908-4221028 ( 21) TATCGATG 1 chr3R:5742379-5742499 ( 81) TATCGATG 1 chr3L:18673140-18673260 ( 49) TATCGATG 1 chr3L:13486724-13486844 ( 57) TATCGATG 1 chr2R:16571768-16571888 ( 23) TATCGATG 1 chr2L:1980760-1980880 ( 9) TATCGATG 1 chr2L:10767958-10768078 ( 48) TATCGATG 1 chr3R:4381246-4381366 ( 24) TATCGATG 1 chr2L:1077872-1077992 ( 46) AATCGATA 1 chr3L:15563023-15563143 ( 65) AATCGATA 1 chr2L:20918857-20918977 ( 106) AATCGATA 1 chr2R:9989048-9989168 ( 65) AATCGATA 1 chr3L:16955388-16955508 ( 46) AATCGATA 1 chr3L:21317996-21318116 ( 30) AATCGATA 1 chr2R:18140715-18140835 ( 22) AATCGATA 1 chr2R:10437347-10437467 ( 49) AATCGATA 1 chrX:5420847-5420967 ( 50) CATCGATA 1 chr2R:21183229-21183349 ( 42) CATCGATA 1 chrX:8560428-8560548 ( 97) CATCGATA 1 chr2L:21156224-21156344 ( 64) AATCGATG 1 chr2R:23551253-23551373 ( 32) AATCGATG 1 chr3L:6743120-6743240 ( 72) CATCGATG 1 chr3L:5603978-5604098 ( 12) CATCGATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4344 E= 3.7e-012 -13 -74 -1189 114 179 -1189 -1189 -1189 -1189 -1189 -1189 186 -1189 219 -1189 -1189 -1189 -1189 221 -1189 179 -1189 -1189 -1189 -1189 -1189 -1189 186 125 -1189 55 -1189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 3.7e-012 0.263158 0.131579 0.000000 0.605263 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.684211 0.000000 0.315789 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 regular expression -------------------------------------------------------------------------------- [TA]ATCGAT[AG] -------------------------------------------------------------------------------- Time 7.48 secs. ******************************************************************************** ******************************************************************************** MOTIF YGGCAGCR MEME-2 width = 8 sites = 39 llr = 332 E-value = 4.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGGCAGCR MEME-2 Description -------------------------------------------------------------------------------- Simplified A 22::a::3 pos.-specific C 521a::a: probability G :69::a:6 matrix T 3::::::1 bits 2.2 * ** 2.0 ** ** 1.8 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ***** (12.3 bits) 0.9 ****** 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGGCAGCG consensus T A sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCAGCR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:1077872-1077992 22 6.70e-06 ATATACCAAA CGGCAGCG AACGGCCACG chr3R:27273623-27273743 70 6.70e-06 TACTAAACAA CGGCAGCG CCAGCAGCTA chr3L:5654657-5654777 70 6.70e-06 TCGTGCGCAG CGGCAGCG TTTTCCTAAT chrX:10348202-10348322 25 6.70e-06 TCGTTCTGTC CGGCAGCG TGAGGATTTG chr3L:11833402-11833522 4 6.70e-06 TCA CGGCAGCG TTGGAATTAG chr2R:6133337-6133457 40 6.70e-06 GTAGTGGGGA CGGCAGCG GCTTGGTGTC chrX:3968852-3968972 65 1.51e-05 ACCACAGGTC TGGCAGCG CAAAAGCTTG chr2R:19275611-19275731 61 1.51e-05 CATCCCGCTC TGGCAGCG CTCGGGAAAT chr2R:21295601-21295721 69 1.51e-05 TTCGGCCCGG TGGCAGCG CTGAAATAAC chr3R:4381246-4381366 50 1.51e-05 GCACCATCGA TGGCAGCG TAGCCCACAG chr3L:20944340-20944460 51 2.40e-05 AACAAATGAG CGGCAGCA GGCAGAATAA chrX:5901911-5902031 20 3.28e-05 ACGTCGACGC AGGCAGCG ATTGAAAAAC chr2L:1980760-1980880 85 3.28e-05 GCAGGTGGCA AGGCAGCG ATAGATCGGA chr2L:15039371-15039491 89 3.28e-05 TATCGCCGGT AGGCAGCG ACTATCATAA chr2R:13171408-13171528 30 4.86e-05 GCAAACAAAT CAGCAGCG TCTTCGCCAA chr2R:24132857-24132977 82 4.86e-05 CACTAGCTCG CAGCAGCG CACGTGATAC chr3L:1295839-1295959 80 6.83e-05 CTGGCAACGC TGGCAGCA GTAGAATTAT chr3L:3239572-3239692 101 6.83e-05 TCGACTAGCT TGGCAGCA CTGGCGAAAA chrX:5420847-5420967 16 6.83e-05 TCAAATCGAA TGGCAGCA CATGCACAAA chr3L:8912390-8912510 5 6.83e-05 TATC TGGCAGCA CTGTAAAGCT chr2R:10899184-10899304 50 6.83e-05 CCTTTTAACG CGGCAGCT TGTACCTTGT chr2R:9989048-9989168 54 8.87e-05 TTACAAACCA TCGCAGCG TGTAATCGAT chrX:6590784-6590904 38 9.78e-05 CGGTGACGAA CCGCAGCA GTGTCTATCG chr2R:9692715-9692835 28 9.78e-05 GCTCGCTTCG CCGCAGCA TTAACGCCGC chr2R:15330926-15331046 22 9.78e-05 CAAGCTCCTG CCGCAGCA TCAAGAAGGA chr3R:18298327-18298447 109 1.30e-04 AAAACAACAA CAGCAGCA GCCG chr3R:6008479-6008599 43 1.30e-04 GATTTATCCT ACGCAGCG CGGCATCCGC chr2R:7699147-7699267 77 1.30e-04 AAAAATACTA CAGCAGCA ATGGATTACG chrX:19494395-19494515 62 1.30e-04 GTGCTGCAGA ACGCAGCG TGTATTTACA chr2R:12586909-12587029 91 1.30e-04 GAGGTAACAG CAGCAGCA AACGCAACAA chr2R:15735461-15735581 106 1.30e-04 gctacaacag cagcagca gcagcag chr2R:21323925-21324045 89 1.30e-04 AATGGATATT ACGCAGCG GTAAAATTAT chr3L:12336378-12336498 86 1.41e-04 AATTAACAGA TGGCAGCT CAGCTACTGC chr3L:21484096-21484216 95 1.41e-04 GTAGTCGGTA TGGCAGCT CCAATGGGTT chr2R:12173442-12173562 98 1.52e-04 GAAACTACTA AAGCAGCG CAAAGAACGT chr3R:8181535-8181655 107 1.64e-04 GGTGAGAGGG AGGCAGCT ATACAG chr2L:10565736-10565856 49 1.64e-04 ACCAAATGGC AGGCAGCT CGGCACAGTG chr2R:13586370-13586490 31 1.70e-04 TGCCAAAAAA CGCCAGCG ATTTCGGGCG chr2R:16202880-16203000 31 1.70e-04 AGGAAAATAC CGCCAGCG ATCAGTGTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCAGCR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1077872-1077992 6.7e-06 21_[+2]_91 chr3R:27273623-27273743 6.7e-06 69_[+2]_43 chr3L:5654657-5654777 6.7e-06 69_[+2]_43 chrX:10348202-10348322 6.7e-06 24_[+2]_88 chr3L:11833402-11833522 6.7e-06 3_[+2]_109 chr2R:6133337-6133457 6.7e-06 39_[+2]_73 chrX:3968852-3968972 1.5e-05 64_[+2]_48 chr2R:19275611-19275731 1.5e-05 60_[+2]_52 chr2R:21295601-21295721 1.5e-05 68_[+2]_44 chr3R:4381246-4381366 1.5e-05 49_[+2]_63 chr3L:20944340-20944460 2.4e-05 50_[+2]_62 chrX:5901911-5902031 3.3e-05 19_[+2]_93 chr2L:1980760-1980880 3.3e-05 84_[+2]_28 chr2L:15039371-15039491 3.3e-05 88_[+2]_24 chr2R:13171408-13171528 4.9e-05 29_[+2]_83 chr2R:24132857-24132977 4.9e-05 81_[+2]_31 chr3L:1295839-1295959 6.8e-05 79_[+2]_33 chr3L:3239572-3239692 6.8e-05 100_[+2]_12 chrX:5420847-5420967 6.8e-05 15_[+2]_97 chr3L:8912390-8912510 6.8e-05 4_[+2]_108 chr2R:10899184-10899304 6.8e-05 49_[+2]_63 chr2R:9989048-9989168 8.9e-05 53_[+2]_59 chrX:6590784-6590904 9.8e-05 37_[+2]_75 chr2R:9692715-9692835 9.8e-05 27_[+2]_85 chr2R:15330926-15331046 9.8e-05 21_[+2]_91 chr3R:18298327-18298447 0.00013 108_[+2]_4 chr3R:6008479-6008599 0.00013 42_[+2]_70 chr2R:7699147-7699267 0.00013 76_[+2]_36 chrX:19494395-19494515 0.00013 61_[+2]_51 chr2R:12586909-12587029 0.00013 90_[+2]_22 chr2R:15735461-15735581 0.00013 105_[+2]_7 chr2R:21323925-21324045 0.00013 88_[+2]_24 chr3L:12336378-12336498 0.00014 85_[+2]_27 chr3L:21484096-21484216 0.00014 94_[+2]_18 chr2R:12173442-12173562 0.00015 97_[+2]_15 chr3R:8181535-8181655 0.00016 106_[+2]_6 chr2L:10565736-10565856 0.00016 48_[+2]_64 chr2R:13586370-13586490 0.00017 30_[+2]_82 chr2R:16202880-16203000 0.00017 30_[+2]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCAGCR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGGCAGCR width=8 seqs=39 chr2L:1077872-1077992 ( 22) CGGCAGCG 1 chr3R:27273623-27273743 ( 70) CGGCAGCG 1 chr3L:5654657-5654777 ( 70) CGGCAGCG 1 chrX:10348202-10348322 ( 25) CGGCAGCG 1 chr3L:11833402-11833522 ( 4) CGGCAGCG 1 chr2R:6133337-6133457 ( 40) CGGCAGCG 1 chrX:3968852-3968972 ( 65) TGGCAGCG 1 chr2R:19275611-19275731 ( 61) TGGCAGCG 1 chr2R:21295601-21295721 ( 69) TGGCAGCG 1 chr3R:4381246-4381366 ( 50) TGGCAGCG 1 chr3L:20944340-20944460 ( 51) CGGCAGCA 1 chrX:5901911-5902031 ( 20) AGGCAGCG 1 chr2L:1980760-1980880 ( 85) AGGCAGCG 1 chr2L:15039371-15039491 ( 89) AGGCAGCG 1 chr2R:13171408-13171528 ( 30) CAGCAGCG 1 chr2R:24132857-24132977 ( 82) CAGCAGCG 1 chr3L:1295839-1295959 ( 80) TGGCAGCA 1 chr3L:3239572-3239692 ( 101) TGGCAGCA 1 chrX:5420847-5420967 ( 16) TGGCAGCA 1 chr3L:8912390-8912510 ( 5) TGGCAGCA 1 chr2R:10899184-10899304 ( 50) CGGCAGCT 1 chr2R:9989048-9989168 ( 54) TCGCAGCG 1 chrX:6590784-6590904 ( 38) CCGCAGCA 1 chr2R:9692715-9692835 ( 28) CCGCAGCA 1 chr2R:15330926-15331046 ( 22) CCGCAGCA 1 chr3R:18298327-18298447 ( 109) CAGCAGCA 1 chr3R:6008479-6008599 ( 43) ACGCAGCG 1 chr2R:7699147-7699267 ( 77) CAGCAGCA 1 chrX:19494395-19494515 ( 62) ACGCAGCG 1 chr2R:12586909-12587029 ( 91) CAGCAGCA 1 chr2R:15735461-15735581 ( 106) CAGCAGCA 1 chr2R:21323925-21324045 ( 89) ACGCAGCG 1 chr3L:12336378-12336498 ( 86) TGGCAGCT 1 chr3L:21484096-21484216 ( 95) TGGCAGCT 1 chr2R:12173442-12173562 ( 98) AAGCAGCG 1 chr3R:8181535-8181655 ( 107) AGGCAGCT 1 chr2L:10565736-10565856 ( 49) AGGCAGCT 1 chr2R:13586370-13586490 ( 31) CGCCAGCG 1 chr2R:16202880-16203000 ( 31) CGCCAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCAGCR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.326 E= 4.2e-002 -32 115 -1193 3 -68 -29 157 -1193 -1193 -210 213 -1193 -1193 219 -1193 -1193 179 -1193 -1193 -1193 -1193 -1193 221 -1193 -1193 219 -1193 -1193 9 -1193 138 -110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCAGCR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 4.2e-002 0.230769 0.487179 0.000000 0.282051 0.179487 0.179487 0.641026 0.000000 0.000000 0.051282 0.948718 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.307692 0.000000 0.564103 0.128205 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCAGCR MEME-2 regular expression -------------------------------------------------------------------------------- [CTA]GGCAGC[GA] -------------------------------------------------------------------------------- Time 13.72 secs. ******************************************************************************** ******************************************************************************** MOTIF CGTTGCCA MEME-3 width = 8 sites = 12 llr = 125 E-value = 1.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGTTGCCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3::::::a pos.-specific C 8:2::aa: probability G :a::a::: matrix T ::8a:::: bits 2.2 * *** 2.0 * *** 1.8 * ***** 1.5 * ***** Relative 1.3 ******** Entropy 1.1 ******** (15.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGTTGCCA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTTGCCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:12336378-12336498 55 1.09e-05 GACGACAAAG CGTTGCCA CATGGATAGA chr2R:22375058-22375178 44 1.09e-05 ATATCACACT CGTTGCCA TCTCCAACGG chrX:5420847-5420967 94 1.09e-05 TCTTAGGCGG CGTTGCCA CCGAATGTGC chr2R:9989048-9989168 24 1.09e-05 TTTCCTTTAG CGTTGCCA CTTCAATTTC chr3L:21196754-21196874 23 1.09e-05 TTTACTTACG CGTTGCCA AACACCAGCT chr3L:630126-630246 50 1.09e-05 CTCCCCGCGG CGTTGCCA GATTGTCATT chr3R:31053973-31054093 9 1.09e-05 TATATTGG CGTTGCCA GATTATCGAA chr3R:19024033-19024153 4 2.51e-05 CAG AGTTGCCA GACTGAAGAT chrX:3811666-3811786 108 2.51e-05 gcatttgcGC AGTTGCCA CACAG chr2R:15330926-15331046 78 2.51e-05 GCGCCACCAG AGTTGCCA CTAAAAGTCT chr2L:21156224-21156344 37 3.38e-05 GGCAAAGCGA CGCTGCCA CGACGATAGT chr3R:16263995-16264115 85 3.38e-05 TACTGAGCAG CGCTGCCA GATTCGGTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTTGCCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:12336378-12336498 1.1e-05 54_[+3]_58 chr2R:22375058-22375178 1.1e-05 43_[+3]_69 chrX:5420847-5420967 1.1e-05 93_[+3]_19 chr2R:9989048-9989168 1.1e-05 23_[+3]_89 chr3L:21196754-21196874 1.1e-05 22_[+3]_90 chr3L:630126-630246 1.1e-05 49_[+3]_63 chr3R:31053973-31054093 1.1e-05 8_[+3]_104 chr3R:19024033-19024153 2.5e-05 3_[+3]_109 chrX:3811666-3811786 2.5e-05 107_[+3]_5 chr2R:15330926-15331046 2.5e-05 77_[+3]_35 chr2L:21156224-21156344 3.4e-05 36_[+3]_76 chr3R:16263995-16264115 3.4e-05 84_[+3]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTTGCCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGTTGCCA width=8 seqs=12 chr3L:12336378-12336498 ( 55) CGTTGCCA 1 chr2R:22375058-22375178 ( 44) CGTTGCCA 1 chrX:5420847-5420967 ( 94) CGTTGCCA 1 chr2R:9989048-9989168 ( 24) CGTTGCCA 1 chr3L:21196754-21196874 ( 23) CGTTGCCA 1 chr3L:630126-630246 ( 50) CGTTGCCA 1 chr3R:31053973-31054093 ( 9) CGTTGCCA 1 chr3R:19024033-19024153 ( 4) AGTTGCCA 1 chrX:3811666-3811786 ( 108) AGTTGCCA 1 chr2R:15330926-15331046 ( 78) AGTTGCCA 1 chr2L:21156224-21156344 ( 37) CGCTGCCA 1 chr3R:16263995-16264115 ( 85) CGCTGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTTGCCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 1.6e+003 -21 177 -1023 -1023 -1023 -1023 221 -1023 -1023 -40 -1023 160 -1023 -1023 -1023 186 -1023 -1023 221 -1023 -1023 219 -1023 -1023 -1023 219 -1023 -1023 179 -1023 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTTGCCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.6e+003 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTTGCCA MEME-3 regular expression -------------------------------------------------------------------------------- [CA]GTTGCCA -------------------------------------------------------------------------------- Time 19.90 secs. ******************************************************************************** ******************************************************************************** MOTIF GCACTGCG MEME-4 width = 8 sites = 17 llr = 164 E-value = 5.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACTGCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :28:2::2 pos.-specific C :8:a::a: probability G a:2::a:8 matrix T ::::8::: bits 2.2 * * ** 2.0 * * ** 1.8 * * ** 1.5 ** * *** Relative 1.3 ** * *** Entropy 1.1 ******** (13.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCACTGCG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15384037-15384157 22 8.53e-06 AGCTGAACGT GCACTGCG AGAAATTAGC chr2R:12772720-12772840 11 8.53e-06 GAGCGAGACT GCACTGCG AAAAATCGGT chr2L:20093996-20094116 107 8.53e-06 ACACATGGTT GCACTGCG CGATAA chr2L:21156224-21156344 13 8.53e-06 TTCTTCGTGC GCACTGCG CAGTGTGGCA chr2R:22450428-22450548 9 8.53e-06 CGACAAGT GCACTGCG AGAAATCGTA chrX:6037359-6037479 96 1.75e-05 TGGTCACACC GCACAGCG GGCCAAGCTC chr3R:4220908-4221028 8 1.75e-05 GATAAGA GCACAGCG CCACATATCG chr2R:7510121-7510241 83 1.75e-05 GGCCAGTGCT GCACAGCG CAAGAATAGG chr2R:14981168-14981288 85 2.39e-05 TGGTAACACC GCGCTGCG GTCACACCGA chr3R:23921281-23921401 5 2.39e-05 TTAT GCGCTGCG CGTGTAATGA chr2L:1077872-1077992 71 4.65e-05 CGATAGTATC GCACTGCA AACTGACATC chr3L:18822529-18822649 109 4.65e-05 AAAACAAATG GAACTGCG CTGC chr3L:20771123-20771243 1 4.65e-05 . GAACTGCG GCGTGACTCA chr3L:16571454-16571574 30 4.65e-05 AGGGTTAGAT GCACTGCA AGAAACTCTA chr3L:14672801-14672921 98 4.65e-05 CGTGAAAAAT GAACTGCG GCAAAGAAAA chrX:10348202-10348322 62 4.65e-05 CTTGTGGGAT GCACTGCA TCCTTAGCGG chr2R:22700898-22701018 34 5.32e-05 GCGATTCACG GCGCAGCG AAAACTCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15384037-15384157 8.5e-06 21_[+4]_91 chr2R:12772720-12772840 8.5e-06 10_[+4]_102 chr2L:20093996-20094116 8.5e-06 106_[+4]_6 chr2L:21156224-21156344 8.5e-06 12_[+4]_100 chr2R:22450428-22450548 8.5e-06 8_[+4]_104 chrX:6037359-6037479 1.7e-05 95_[+4]_17 chr3R:4220908-4221028 1.7e-05 7_[+4]_105 chr2R:7510121-7510241 1.7e-05 82_[+4]_30 chr2R:14981168-14981288 2.4e-05 84_[+4]_28 chr3R:23921281-23921401 2.4e-05 4_[+4]_108 chr2L:1077872-1077992 4.6e-05 70_[+4]_42 chr3L:18822529-18822649 4.6e-05 108_[+4]_4 chr3L:20771123-20771243 4.6e-05 [+4]_112 chr3L:16571454-16571574 4.6e-05 29_[+4]_83 chr3L:14672801-14672921 4.6e-05 97_[+4]_15 chrX:10348202-10348322 4.6e-05 61_[+4]_51 chr2R:22700898-22701018 5.3e-05 33_[+4]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACTGCG width=8 seqs=17 chrX:15384037-15384157 ( 22) GCACTGCG 1 chr2R:12772720-12772840 ( 11) GCACTGCG 1 chr2L:20093996-20094116 ( 107) GCACTGCG 1 chr2L:21156224-21156344 ( 13) GCACTGCG 1 chr2R:22450428-22450548 ( 9) GCACTGCG 1 chrX:6037359-6037479 ( 96) GCACAGCG 1 chr3R:4220908-4221028 ( 8) GCACAGCG 1 chr2R:7510121-7510241 ( 83) GCACAGCG 1 chr2R:14981168-14981288 ( 85) GCGCTGCG 1 chr3R:23921281-23921401 ( 5) GCGCTGCG 1 chr2L:1077872-1077992 ( 71) GCACTGCA 1 chr3L:18822529-18822649 ( 109) GAACTGCG 1 chr3L:20771123-20771243 ( 1) GAACTGCG 1 chr3L:16571454-16571574 ( 30) GCACTGCA 1 chr3L:14672801-14672921 ( 98) GAACTGCG 1 chrX:10348202-10348322 ( 62) GCACTGCA 1 chr2R:22700898-22701018 ( 34) GCGCAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.9265 E= 5.1e+003 -1073 -1073 221 -1073 -71 191 -1073 -1073 151 -1073 -29 -1073 -1073 219 -1073 -1073 -29 -1073 -1073 147 -1073 -1073 221 -1073 -1073 219 -1073 -1073 -71 -1073 193 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 5.1e+003 0.000000 0.000000 1.000000 0.000000 0.176471 0.823529 0.000000 0.000000 0.823529 0.000000 0.176471 0.000000 0.000000 1.000000 0.000000 0.000000 0.235294 0.000000 0.000000 0.764706 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.176471 0.000000 0.823529 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGCG MEME-4 regular expression -------------------------------------------------------------------------------- GCAC[TA]GCG -------------------------------------------------------------------------------- Time 26.07 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTGTTTT MEME-5 width = 8 sites = 9 llr = 95 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G :::a:::: matrix T aaa:aaaa bits 2.2 * 2.0 * 1.8 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGTTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7333364-7333484 113 2.57e-05 TCATTTCGTA TTTGTTTT chr3L:10899305-10899425 86 2.57e-05 GGCGCCCTCT TTTGTTTT TCACACGAAC chr3L:21841287-21841407 4 2.57e-05 GCC TTTGTTTT GTGTTTTGCG chr2R:21060639-21060759 101 2.57e-05 TCGATAGTTA TTTGTTTT GAAAAATCAG chr2R:23551253-23551373 111 2.57e-05 GCAATCGCAG TTTGTTTT CG chr3R:5251687-5251807 23 2.57e-05 GTTTTTGGTC TTTGTTTT CTGCGAGACA chr2R:21514474-21514594 105 2.57e-05 TCGTTGCTCT TTTGTTTT ATGTTAAA chrX:3811666-3811786 34 2.57e-05 TTGCTGGCGG TTTGTTTT GATTCATAGC chr2L:2731427-2731547 42 2.57e-05 TTAGCTTCGT TTTGTTTT TTAATATTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7333364-7333484 2.6e-05 112_[+5] chr3L:10899305-10899425 2.6e-05 85_[+5]_27 chr3L:21841287-21841407 2.6e-05 3_[+5]_109 chr2R:21060639-21060759 2.6e-05 100_[+5]_12 chr2R:23551253-23551373 2.6e-05 110_[+5]_2 chr3R:5251687-5251807 2.6e-05 22_[+5]_90 chr2R:21514474-21514594 2.6e-05 104_[+5]_8 chrX:3811666-3811786 2.6e-05 33_[+5]_79 chr2L:2731427-2731547 2.6e-05 41_[+5]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTGTTTT width=8 seqs=9 chrX:7333364-7333484 ( 113) TTTGTTTT 1 chr3L:10899305-10899425 ( 86) TTTGTTTT 1 chr3L:21841287-21841407 ( 4) TTTGTTTT 1 chr2R:21060639-21060759 ( 101) TTTGTTTT 1 chr2R:23551253-23551373 ( 111) TTTGTTTT 1 chr3R:5251687-5251807 ( 23) TTTGTTTT 1 chr2R:21514474-21514594 ( 105) TTTGTTTT 1 chrX:3811666-3811786 ( 34) TTTGTTTT 1 chr2L:2731427-2731547 ( 42) TTTGTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 1.1e+004 -982 -982 -982 186 -982 -982 -982 186 -982 -982 -982 186 -982 -982 221 -982 -982 -982 -982 186 -982 -982 -982 186 -982 -982 -982 186 -982 -982 -982 186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.1e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 regular expression -------------------------------------------------------------------------------- TTTGTTTT -------------------------------------------------------------------------------- Time 32.16 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15329369-15329489 3.60e-01 120 chr2R:21323925-21324045 5.07e-02 120 chr2R:12173442-12173562 2.22e-02 120 chr3L:15999774-15999894 9.58e-01 120 chr2R:15330926-15331046 8.04e-03 21_[+2(9.78e-05)]_48_[+3(2.51e-05)]_\ 35 chrX:16781241-16781361 2.65e-01 120 chr3R:20276241-20276361 2.48e-01 120 chr2R:7510121-7510241 1.39e-01 82_[+4(1.75e-05)]_30 chr2R:24963943-24964063 2.70e-01 120 chr2L:2873419-2873539 8.33e-01 120 chr2R:25011264-25011384 1.08e-01 120 chr2L:2731427-2731547 1.70e-02 41_[+5(2.57e-05)]_71 chr3R:4381246-4381366 6.58e-04 23_[+1(4.17e-05)]_18_[+2(1.51e-05)]_\ 63 chr2R:10899184-10899304 2.12e-01 49_[+2(6.83e-05)]_63 chr2R:15322143-15322263 9.69e-01 120 chr2L:15039371-15039491 3.70e-02 88_[+2(3.28e-05)]_24 chr3R:17526288-17526408 6.79e-01 120 chr2R:23997299-23997419 4.10e-01 120 chr2R:16202880-16203000 4.88e-03 43_[+3(8.94e-05)]_69 chrX:10086280-10086400 5.06e-01 120 chr2R:11192640-11192760 9.06e-01 120 chr2R:6133337-6133457 1.87e-02 39_[+2(6.70e-06)]_73 chr2R:20330776-20330896 3.49e-01 120 chr3L:5603978-5604098 4.76e-02 120 chr3R:12350621-12350741 1.10e-02 68_[+1(2.39e-05)]_44 chr3R:30802328-30802448 5.01e-01 120 chr3L:11833402-11833522 2.56e-02 3_[+2(6.70e-06)]_109 chr2R:7636649-7636769 5.53e-02 120 chr2R:15326215-15326335 2.32e-01 120 chr3R:11628517-11628637 1.18e-01 120 chr2R:15735461-15735581 5.04e-02 120 chr2L:3748882-3749002 7.05e-02 120 chr3R:18296236-18296356 8.33e-01 120 chr2R:10437347-10437467 9.93e-02 48_[+1(6.68e-05)]_64 chrX:3811666-3811786 1.38e-03 33_[+5(2.57e-05)]_66_[+3(2.51e-05)]_\ 5 chrX:10325970-10326090 9.96e-02 120 chrX:10348202-10348322 1.00e-03 24_[+2(6.70e-06)]_29_[+4(4.65e-05)]_\ 51 chr2R:21514474-21514594 1.96e-02 104_[+5(2.57e-05)]_8 chr3L:10862008-10862128 8.97e-01 120 chr3R:31053973-31054093 2.76e-02 8_[+3(1.09e-05)]_104 chr2R:25183145-25183265 7.58e-01 120 chr3L:1463776-1463896 1.67e-01 120 chrX:5082963-5083083 7.12e-01 120 chr2R:7076992-7077112 9.95e-01 120 chr2R:12586909-12587029 1.44e-01 120 chr2R:9087748-9087868 1.07e-01 63_[+1(2.39e-05)]_49 chrX:16385954-16386074 6.04e-01 120 chr2R:17564766-17564886 2.07e-01 120 chrX:10473629-10473749 8.32e-01 120 chrX:6091207-6091327 5.70e-01 120 chr2L:11203784-11203904 2.17e-01 120 chr2R:9692715-9692835 1.10e-01 27_[+2(9.78e-05)]_85 chr3R:20735525-20735645 1.94e-02 36_[+1(2.39e-05)]_76 chr2L:6179121-6179241 7.76e-01 120 chr2R:9109665-9109785 1.53e-01 120 chrX:19494395-19494515 6.66e-03 120 chrX:8560428-8560548 8.97e-02 96_[+1(8.58e-05)]_16 chr3L:14972823-14972943 4.00e-02 120 chr2R:18140715-18140835 1.28e-01 21_[+1(6.68e-05)]_91 chr2L:16251959-16252079 4.72e-01 120 chr3R:31221098-31221218 5.72e-01 120 chr2R:21295601-21295721 3.05e-03 68_[+2(1.51e-05)]_18_[+4(9.38e-05)]_\ 18 chr2R:24132857-24132977 7.69e-02 81_[+2(4.86e-05)]_31 chr2L:2753236-2753356 9.22e-01 120 chr3L:630126-630246 1.02e-02 49_[+3(1.09e-05)]_63 chr3R:31311036-31311156 4.92e-01 120 chr3L:1568762-1568882 7.80e-01 120 chrX:2159007-2159127 8.50e-02 120 chr3R:18399629-18399749 1.66e-02 100_[+5(2.57e-05)]_12 chr3R:22041832-22041952 5.51e-01 120 chrX:13253270-13253390 1.77e-01 120 chr2L:16647818-16647938 8.46e-01 120 chrX:8141490-8141610 3.59e-01 120 chr3L:21317996-21318116 3.50e-02 29_[+1(6.68e-05)]_83 chr3L:21196754-21196874 3.95e-03 22_[+3(1.09e-05)]_90 chr2L:15060677-15060797 8.04e-01 120 chr2R:22450428-22450548 5.47e-03 8_[+4(8.53e-06)]_104 chr3L:8604454-8604574 4.09e-01 120 chr3L:8912390-8912510 1.93e-02 4_[+2(6.83e-05)]_108 chr2R:15754387-15754507 4.16e-01 120 chrX:17176685-17176805 9.98e-01 120 chr3L:16955388-16955508 6.24e-02 45_[+1(6.68e-05)]_67 chr2R:17091801-17091921 9.62e-01 120 chr2R:23942315-23942435 1.77e-01 120 chrX:1517691-1517811 6.08e-01 120 chr3R:21377377-21377497 9.38e-02 70_[+1(2.39e-05)]_42 chr3L:7335199-7335319 1.09e-01 120 chr3R:10626083-10626203 9.41e-01 120 chr2L:10767958-10768078 4.40e-03 47_[+1(4.17e-05)]_65 chrX:5671796-5671916 1.07e-01 120 chr3L:4353858-4353978 3.38e-01 120 chr3L:15098090-15098210 9.87e-01 120 chr3R:25885282-25885402 2.21e-01 120 chr3R:5251687-5251807 4.43e-03 22_[+5(2.57e-05)]_55_[+1(4.17e-05)]_\ 13_[+1(2.39e-05)]_6 chr3R:16263995-16264115 5.16e-03 84_[+3(3.38e-05)]_28 chr3R:26280452-26280572 2.05e-01 120 chrX:4322554-4322674 2.33e-01 120 chr2R:18158173-18158293 3.13e-01 120 chr2L:1716014-1716134 4.48e-01 120 chr3L:10691032-10691152 2.17e-01 120 chr2R:13586370-13586490 3.89e-01 120 chr2L:1980760-1980880 7.27e-04 8_[+1(4.17e-05)]_68_[+2(3.28e-05)]_\ 28 chrX:3845779-3845899 1.16e-01 120 chr3L:14672801-14672921 2.71e-02 97_[+4(4.65e-05)]_15 chrX:9137333-9137453 1.89e-01 120 chr3R:10350069-10350189 6.80e-01 120 chr3R:31744171-31744291 6.85e-01 120 chr3L:5654657-5654777 2.63e-03 69_[+2(6.70e-06)]_43 chr2R:10854226-10854346 3.63e-01 120 chr3L:11074676-11074796 9.98e-01 120 chr2R:24046779-24046899 1.74e-01 29_[+3(8.94e-05)]_83 chr2R:16571768-16571888 3.18e-02 22_[+1(4.17e-05)]_90 chr3L:17659336-17659456 4.83e-01 120 chr3R:21850175-21850295 7.11e-01 120 chr3R:31060335-31060455 1.13e-01 120 chr2R:16150965-16151085 9.14e-01 120 chr3L:13486724-13486844 1.28e-01 56_[+1(4.17e-05)]_56 chr2L:21260942-21261062 8.85e-01 120 chr3L:20785162-20785282 3.16e-01 120 chr3L:21517082-21517202 7.77e-02 120 chr2R:10066658-10066778 2.31e-01 120 chr2R:23551253-23551373 9.68e-04 110_[+5(2.57e-05)]_2 chr2R:11809530-11809650 1.28e-01 120 chrX:7710926-7711046 4.01e-01 120 chrX:3719790-3719910 6.23e-01 120 chr3L:8525181-8525301 1.52e-02 91_[+1(2.39e-05)]_21 chr3R:11735518-11735638 1.15e-01 120 chr2R:23574937-23575057 8.74e-01 120 chr2L:12010157-12010277 2.47e-01 120 chr2R:7699147-7699267 1.50e-01 120 chr2R:9989048-9989168 7.70e-06 23_[+3(1.09e-05)]_22_[+2(8.87e-05)]_\ 3_[+1(6.68e-05)]_48 chr3R:6008479-6008599 1.87e-01 120 chr3L:13922355-13922475 5.24e-01 120 chrX:11548932-11549052 6.09e-01 120 chrX:13755334-13755454 7.44e-01 120 chr2R:21183229-21183349 1.33e-01 41_[+1(8.58e-05)]_71 chr2R:21060639-21060759 2.92e-02 100_[+5(2.57e-05)]_12 chr3L:3770997-3771117 5.09e-01 120 chrX:21373899-21374019 6.42e-02 4_[+1(2.39e-05)]_108 chr3L:6743120-6743240 9.71e-02 120 chr2R:20601135-20601255 6.21e-01 120 chr2R:8615310-8615430 5.91e-01 120 chr2L:5055098-5055218 9.59e-01 120 chr2L:19140972-19141092 5.45e-01 120 chr2L:3852264-3852384 7.77e-01 120 chr2L:901575-901695 3.84e-01 120 chr3L:20944340-20944460 1.02e-01 50_[+2(2.40e-05)]_62 chr3R:8984766-8984886 6.59e-01 120 chr2R:19275611-19275731 6.37e-02 60_[+2(1.51e-05)]_52 chrX:6695096-6695216 3.18e-01 120 chr3L:15968011-15968131 8.66e-01 120 chr2L:21156224-21156344 8.84e-05 12_[+4(8.53e-06)]_16_[+3(3.38e-05)]_\ 76 chr3R:22147639-22147759 3.13e-01 120 chrX:19852054-19852174 2.04e-02 120 chr2L:20918857-20918977 3.60e-02 105_[+1(6.68e-05)]_7 chr2L:4441011-4441131 3.82e-01 120 chr2R:22700898-22701018 9.76e-04 33_[+4(5.32e-05)]_57_[+1(6.68e-05)]_\ [+1(2.39e-05)]_6 chrX:21117040-21117160 2.85e-01 120 chr3R:22547772-22547892 5.11e-02 120 chr2R:10558994-10559114 5.31e-01 120 chr3R:27273623-27273743 5.09e-02 69_[+2(6.70e-06)]_43 chrX:5420847-5420967 1.75e-04 15_[+2(6.83e-05)]_26_[+1(8.58e-05)]_\ 36_[+3(1.09e-05)]_19 chr3L:13114216-13114336 8.75e-03 120 chrX:11451103-11451223 7.98e-01 120 chr3R:8564025-8564145 3.85e-01 120 chr3R:23921281-23921401 4.93e-02 4_[+4(2.39e-05)]_108 chr3R:4319609-4319729 8.43e-03 10_[+1(2.39e-05)]_102 chr2R:16178582-16178702 4.10e-01 120 chrX:3968852-3968972 6.18e-02 64_[+2(1.51e-05)]_48 chr2R:13055021-13055141 7.45e-01 120 chr2R:22669359-22669479 2.63e-01 120 chr2L:3861506-3861626 7.07e-01 120 chr2R:19357534-19357654 4.38e-01 120 chr2L:6907823-6907943 3.96e-01 120 chr3R:18298327-18298447 1.56e-01 120 chrX:11854951-11855071 1.97e-02 11_[+1(2.39e-05)]_101 chr2R:13171408-13171528 3.85e-02 29_[+2(4.86e-05)]_83 chr3L:8110399-8110519 7.69e-01 120 chr2R:7916495-7916615 9.75e-01 120 chr2R:14981168-14981288 5.88e-02 84_[+4(2.39e-05)]_28 chr2L:20093996-20094116 1.03e-01 106_[+4(8.53e-06)]_6 chr3L:16571454-16571574 1.91e-01 29_[+4(4.65e-05)]_83 chr3R:30052571-30052691 8.92e-02 120 chr2R:11095281-11095401 7.88e-01 120 chr3L:1647425-1647545 9.72e-02 120 chr2L:21215058-21215178 2.12e-01 120 chr3L:21841287-21841407 8.15e-02 3_[+5(2.57e-05)]_109 chr3L:21484096-21484216 7.01e-02 120 chrX:6590784-6590904 2.25e-03 37_[+2(9.78e-05)]_5_[+1(2.39e-05)]_\ 62 chr3L:9435499-9435619 8.80e-01 120 chr3L:14956437-14956557 7.61e-01 120 chr3L:1352169-1352289 4.37e-01 120 chr2L:6797553-6797673 8.60e-01 120 chr3L:18673140-18673260 2.64e-02 48_[+1(4.17e-05)]_64 chr2R:12772720-12772840 2.70e-02 10_[+4(8.53e-06)]_102 chr3L:7360427-7360547 1.33e-02 92_[+1(2.39e-05)]_20 chr2L:220713-220833 5.44e-01 120 chr3L:20771123-20771243 1.53e-01 [+4(4.65e-05)]_112 chr2L:10565736-10565856 1.84e-01 120 chr3R:14741458-14741578 5.02e-01 120 chr2L:4847296-4847416 4.48e-01 120 chr3R:5368259-5368379 8.77e-01 120 chr3L:3239572-3239692 1.79e-01 100_[+2(6.83e-05)]_12 chr2R:22375058-22375178 2.63e-02 43_[+3(1.09e-05)]_69 chr3L:18822529-18822649 1.14e-02 35_[+1(2.39e-05)]_65_[+4(4.65e-05)]_\ 4 chr2R:14906617-14906737 7.44e-01 120 chr2R:9971145-9971265 9.85e-01 120 chr2L:11970971-11971091 1.55e-02 120 chr3L:12336378-12336498 1.80e-03 54_[+3(1.09e-05)]_58 chrX:3068433-3068553 3.23e-01 120 chr2L:277282-277402 5.77e-02 120 chr2L:3042195-3042315 1.74e-01 120 chr3L:10899305-10899425 1.65e-01 85_[+5(2.57e-05)]_27 chr2L:7307042-7307162 4.03e-01 120 chr2R:23577406-23577526 6.29e-01 120 chr3R:15250705-15250825 4.62e-01 120 chr3L:613694-613814 9.11e-01 120 chrX:9356476-9356596 9.68e-01 120 chrX:16967543-16967663 3.41e-02 120 chrX:18635395-18635515 4.34e-01 120 chr2L:1473514-1473634 1.75e-01 19_[+4(7.69e-05)]_93 chrX:15384037-15384157 7.14e-02 21_[+4(8.53e-06)]_91 chrX:5901911-5902031 1.73e-01 19_[+2(3.28e-05)]_93 chrX:4530099-4530219 4.45e-01 120 chr3L:1295839-1295959 6.97e-02 79_[+2(6.83e-05)]_33 chr3R:8181535-8181655 4.52e-02 120 chr3R:23225509-23225629 6.77e-01 120 chr3L:4379038-4379158 2.91e-01 120 chr3R:5742379-5742499 7.25e-02 80_[+1(4.17e-05)]_32 chr3L:15563023-15563143 1.52e-02 64_[+1(6.68e-05)]_48 chr3R:5591502-5591622 8.81e-01 120 chr2L:13445577-13445697 5.82e-02 120 chr2L:1077872-1077992 8.99e-05 21_[+2(6.70e-06)]_16_[+1(6.68e-05)]_\ 4_[+1(8.58e-05)]_5_[+4(4.65e-05)]_42 chr3L:5857059-5857179 9.90e-01 120 chr3R:19024033-19024153 6.40e-03 3_[+3(2.51e-05)]_109 chr2L:7033467-7033587 3.11e-01 120 chrX:7333364-7333484 7.02e-02 112_[+5(2.57e-05)] chr3R:4220908-4221028 9.11e-04 7_[+4(1.75e-05)]_5_[+1(4.17e-05)]_\ 92 chrX:6037359-6037479 5.69e-03 95_[+4(1.75e-05)]_17 chr3L:292260-292380 3.95e-01 120 chrX:17751802-17751922 4.01e-01 120 chr2R:19228944-19229064 4.04e-02 3_[+4(4.65e-05)]_109 chr2R:15330703-15330823 9.10e-01 120 chr3R:30195708-30195828 4.31e-01 120 chr2R:8649406-8649526 5.09e-01 120 chrX:16422786-16422906 2.56e-01 120 chr2L:16703806-16703926 5.08e-02 120 chr2R:23856885-23857005 1.11e-02 42_[+1(2.39e-05)]_70 chr2R:11427838-11427958 1.54e-01 120 chr2L:17963239-17963359 2.12e-03 108_[+1(2.39e-05)]_4 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************