******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hr39.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:8103230-8103350 1.0000 120 chrX:8829545-8829665 1.0000 120 chrX:5606463-5606583 1.0000 120 chrX:15259434-15259554 1.0000 120 chr3R:18515191-18515311 1.0000 120 chrX:597203-597323 1.0000 120 chrX:1643779-1643899 1.0000 120 chrX:5511306-5511426 1.0000 120 chrX:4897031-4897151 1.0000 120 chrX:8179120-8179240 1.0000 120 chrX:20942197-20942317 1.0000 120 chrX:1538777-1538897 1.0000 120 chr3L:19653689-19653809 1.0000 120 chrX:9668101-9668221 1.0000 120 chrX:14719418-14719538 1.0000 120 chr2L:11737127-11737247 1.0000 120 chrX:6671326-6671446 1.0000 120 chr2L:14154248-14154368 1.0000 120 chr2R:6893758-6893878 1.0000 120 chrX:9716987-9717107 1.0000 120 chr3R:22831177-22831297 1.0000 120 chr3R:6116988-6117108 1.0000 120 chr2L:19101235-19101355 1.0000 120 chr3R:29046576-29046696 1.0000 120 chr2R:7598445-7598565 1.0000 120 chrX:12700907-12701027 1.0000 120 chr3L:7258448-7258568 1.0000 120 chrX:16648929-16649049 1.0000 120 chrX:16523530-16523650 1.0000 120 chr3R:23539925-23540045 1.0000 120 chrX:9357003-9357123 1.0000 120 chr3L:4472114-4472234 1.0000 120 chr2R:10690658-10690778 1.0000 120 chr3R:20927172-20927292 1.0000 120 chr2R:23863736-23863856 1.0000 120 chr2R:10609922-10610042 1.0000 120 chr3R:14430031-14430151 1.0000 120 chr3L:2688672-2688792 1.0000 120 chrX:19025758-19025878 1.0000 120 chr3L:10924619-10924739 1.0000 120 chrX:18481429-18481549 1.0000 120 chrX:12050467-12050587 1.0000 120 chr3R:12174817-12174937 1.0000 120 chrX:15431232-15431352 1.0000 120 chrX:6717731-6717851 1.0000 120 chr3R:29325195-29325315 1.0000 120 chr3L:11549593-11549713 1.0000 120 chrX:9847672-9847792 1.0000 120 chr3R:30031975-30032095 1.0000 120 chr2L:7744333-7744453 1.0000 120 chr2L:12908136-12908256 1.0000 120 chrX:14145592-14145712 1.0000 120 chr3R:4682757-4682877 1.0000 120 chr2L:3925025-3925145 1.0000 120 chr2L:763944-764064 1.0000 120 chr2L:18543485-18543605 1.0000 120 chr2L:1619674-1619794 1.0000 120 chr3L:2520139-2520259 1.0000 120 chrX:6515434-6515554 1.0000 120 chr2R:11028258-11028378 1.0000 120 chr3L:1252790-1252910 1.0000 120 chr2L:10011115-10011235 1.0000 120 chr2R:15548633-15548753 1.0000 120 chrX:6894360-6894480 1.0000 120 chr3L:19462896-19463016 1.0000 120 chr3R:28594541-28594661 1.0000 120 chrX:4313369-4313489 1.0000 120 chrX:19539807-19539927 1.0000 120 chr3R:16885752-16885872 1.0000 120 chr3L:11025194-11025314 1.0000 120 chr2L:1306236-1306356 1.0000 120 chr2R:24009118-24009238 1.0000 120 chr2R:14798462-14798582 1.0000 120 chr3R:26781102-26781222 1.0000 120 chr2L:806340-806460 1.0000 120 chr2R:20950740-20950860 1.0000 120 chrX:11720772-11720892 1.0000 120 chr3L:1995964-1996084 1.0000 120 chr2R:13490695-13490815 1.0000 120 chr2R:11154986-11155106 1.0000 120 chr3R:13329534-13329654 1.0000 120 chrX:18732190-18732310 1.0000 120 chr2L:14835381-14835501 1.0000 120 chr3R:6891170-6891290 1.0000 120 chr2R:10924190-10924310 1.0000 120 chr3R:13390151-13390271 1.0000 120 chr2L:10684016-10684136 1.0000 120 chr3L:22308754-22308874 1.0000 120 chr3R:6968195-6968315 1.0000 120 chr2L:627002-627122 1.0000 120 chr3L:8759946-8760066 1.0000 120 chr2R:870423-870543 1.0000 120 chr2R:23298222-23298342 1.0000 120 chr2L:3874538-3874658 1.0000 120 chrX:13944299-13944419 1.0000 120 chr2R:20876916-20877036 1.0000 120 chr2R:10334936-10335056 1.0000 120 chrX:9940715-9940835 1.0000 120 chr3L:598488-598608 1.0000 120 chrX:16865683-16865803 1.0000 120 chr2R:6067603-6067723 1.0000 120 chr3L:7824948-7825068 1.0000 120 chr2L:3448573-3448693 1.0000 120 chr2R:8387999-8388119 1.0000 120 chrX:12044944-12045064 1.0000 120 chr3R:30929573-30929693 1.0000 120 chr2L:5783018-5783138 1.0000 120 chr2L:15238112-15238232 1.0000 120 chr2R:19599417-19599537 1.0000 120 chrX:8323764-8323884 1.0000 120 chr3L:20260741-20260861 1.0000 120 chrX:14102234-14102354 1.0000 120 chr2L:9864032-9864152 1.0000 120 chr2L:735866-735986 1.0000 120 chr2R:11111166-11111286 1.0000 120 chrX:20748978-20749098 1.0000 120 chrX:17807442-17807562 1.0000 120 chr2R:13045524-13045644 1.0000 120 chrX:13580318-13580438 1.0000 120 chrX:16510817-16510937 1.0000 120 chr3L:12162436-12162556 1.0000 120 chr3R:6877370-6877490 1.0000 120 chr2R:8389341-8389461 1.0000 120 chr3L:19887712-19887832 1.0000 120 chrX:15215806-15215926 1.0000 120 chr3R:17632924-17633044 1.0000 120 chr2R:20867376-20867496 1.0000 120 chr3R:6952184-6952304 1.0000 120 chr3R:22103946-22104066 1.0000 120 chr2R:14558255-14558375 1.0000 120 chr3L:3135338-3135458 1.0000 120 chr2L:14940174-14940294 1.0000 120 chr3L:12708220-12708340 1.0000 120 chr2R:7470619-7470739 1.0000 120 chr3L:11160433-11160553 1.0000 120 chr2L:7923340-7923460 1.0000 120 chr2L:12970053-12970173 1.0000 120 chr2R:22001758-22001878 1.0000 120 chrX:10184076-10184196 1.0000 120 chr3L:4143247-4143367 1.0000 120 chr3R:22660556-22660676 1.0000 120 chrX:13315788-13315908 1.0000 120 chr2R:13765229-13765349 1.0000 120 chr3L:18628669-18628789 1.0000 120 chr2R:17312910-17313030 1.0000 120 chrX:18770724-18770844 1.0000 120 chrX:13573959-13574079 1.0000 120 chr3L:21631001-21631121 1.0000 120 chr3R:8587979-8588099 1.0000 120 chr2L:12849824-12849944 1.0000 120 chr2R:22065993-22066113 1.0000 120 chr2R:22733087-22733207 1.0000 120 chr2L:5332376-5332496 1.0000 120 chr3R:19236951-19237071 1.0000 120 chrX:2819026-2819146 1.0000 120 chr2R:19330597-19330717 1.0000 120 chrX:14125393-14125513 1.0000 120 chr3L:1931772-1931892 1.0000 120 chr3L:17386059-17386179 1.0000 120 chr3R:9322705-9322825 1.0000 120 chrX:16566068-16566188 1.0000 120 chr2R:23308068-23308188 1.0000 120 chr2L:3219754-3219874 1.0000 120 chr2R:6566178-6566298 1.0000 120 chr2R:22576094-22576214 1.0000 120 chrX:933321-933441 1.0000 120 chr2R:6914654-6914774 1.0000 120 chr3R:17792832-17792952 1.0000 120 chrX:1977326-1977446 1.0000 120 chr3L:9884782-9884902 1.0000 120 chrX:17009191-17009311 1.0000 120 chr2R:22967109-22967229 1.0000 120 chr2L:9445035-9445155 1.0000 120 chr3R:5334552-5334672 1.0000 120 chr2L:7236199-7236319 1.0000 120 chr2R:18192033-18192153 1.0000 120 chr3R:29330370-29330490 1.0000 120 chr3R:6278768-6278888 1.0000 120 chrX:9767810-9767930 1.0000 120 chr2L:19702604-19702724 1.0000 120 chr3L:5324981-5325101 1.0000 120 chr2R:8430923-8431043 1.0000 120 chr2R:14690663-14690783 1.0000 120 chr3R:13244289-13244409 1.0000 120 chr3R:13659030-13659150 1.0000 120 chr3L:19917205-19917325 1.0000 120 chr3R:9270924-9271044 1.0000 120 chrX:12251000-12251120 1.0000 120 chr2L:5959957-5960077 1.0000 120 chr3R:12295034-12295154 1.0000 120 chr3R:17698453-17698573 1.0000 120 chr2R:8828397-8828517 1.0000 120 chrX:15249985-15250105 1.0000 120 chr3L:8874454-8874574 1.0000 120 chr2R:20600255-20600375 1.0000 120 chr3R:25666161-25666281 1.0000 120 chrX:2640964-2641084 1.0000 120 chr3L:18492800-18492920 1.0000 120 chr3R:16659905-16660025 1.0000 120 chr2R:12744404-12744524 1.0000 120 chr3R:13503506-13503626 1.0000 120 chr2R:4552748-4552868 1.0000 120 chrX:11003559-11003679 1.0000 120 chr2L:10960378-10960498 1.0000 120 chr2L:1087748-1087868 1.0000 120 chr3L:3971490-3971610 1.0000 120 chr3L:2658933-2659053 1.0000 120 chr2R:15361748-15361868 1.0000 120 chr3L:20106148-20106268 1.0000 120 chr2R:5848411-5848531 1.0000 120 chr3R:13545646-13545766 1.0000 120 chr3R:10674782-10674902 1.0000 120 chr2R:24332992-24333112 1.0000 120 chr3R:24863246-24863366 1.0000 120 chr3L:7412780-7412900 1.0000 120 chr3R:22277782-22277902 1.0000 120 chr3R:13545353-13545473 1.0000 120 chr3R:11436221-11436341 1.0000 120 chr2L:20441952-20442072 1.0000 120 chr3L:5800601-5800721 1.0000 120 chr2R:7209208-7209328 1.0000 120 chr2L:2040079-2040199 1.0000 120 chr3L:17479734-17479854 1.0000 120 chr2L:10972910-10973030 1.0000 120 chr2L:9359104-9359224 1.0000 120 chr2R:18872857-18872977 1.0000 120 chr2L:6208648-6208768 1.0000 120 chr3L:12340164-12340284 1.0000 120 chrX:10295342-10295462 1.0000 120 chrX:17937777-17937897 1.0000 120 chrX:12812920-12813040 1.0000 120 chr2L:1199478-1199598 1.0000 120 chr3R:7448481-7448601 1.0000 120 chr2R:7894857-7894977 1.0000 120 chr3R:15951710-15951830 1.0000 120 chrX:10316322-10316442 1.0000 120 chr3L:8257596-8257716 1.0000 120 chr2R:16077575-16077695 1.0000 120 chrX:12126965-12127085 1.0000 120 chr3L:17226033-17226153 1.0000 120 chrX:21429036-21429156 1.0000 120 chr3R:10216014-10216134 1.0000 120 chr3R:2413581-2413701 1.0000 120 chrX:9286247-9286367 1.0000 120 chr2R:8201172-8201292 1.0000 120 chr3R:18129547-18129667 1.0000 120 chr2R:17660396-17660516 1.0000 120 chr2L:3751852-3751972 1.0000 120 chr3R:28490126-28490246 1.0000 120 chrX:11424118-11424238 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Hr39/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hr39.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.222 C 0.28 G 0.277 T 0.222 Background letter frequencies (from file dataset with add-one prior applied): A 0.222 C 0.28 G 0.277 T 0.222 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTT MEME-1 width = 8 sites = 45 llr = 427 E-value = 9.5e-026 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::2:1:: pos.-specific C ::1:2::: probability G :11::::: matrix T a98888aa bits 2.2 * * 2.0 * ** 1.7 ** ** 1.5 ** * ** Relative 1.3 ******** Entropy 1.1 ******** (13.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:18129547-18129667 26 5.90e-06 ttttgttttg tttttttt tttttttttt chrX:12812920-12813040 91 5.90e-06 CAGCCTTCTT TTTTTTTT GCCCCCCGCT chr2R:5848411-5848531 20 5.90e-06 TTTGGTCCTA TTTTTTTT ACCGCCCCCC chr2R:20600255-20600375 37 5.90e-06 tttttttttt tttttttt tttttttttt chr3R:9270924-9271044 49 5.90e-06 CCtttttctt tttttttt ttcctttttC chr2R:14690663-14690783 65 5.90e-06 TTTTGTTATT TTTTTTTT TGCTTCCTTT chrX:9767810-9767930 77 5.90e-06 ttcattttgc tttttttt cttctcttct chr2L:3219754-3219874 37 5.90e-06 aatttttctt tttttttt ttgtttGGTC chr3R:9322705-9322825 64 5.90e-06 ACTTGGGTCC TTTTTTTT GGAGGGGGGG chrX:14125393-14125513 83 5.90e-06 tttttgttcc tttttttt tcttcttttt chr3R:8587979-8588099 39 5.90e-06 ctcttctttt tttttttt tttGTGCCCC chrX:13315788-13315908 49 5.90e-06 tctttttctc tttttttt tctttttTCA chr3R:22660556-22660676 6 5.90e-06 ctttt tttttttt tttggttgcc chr2L:14940174-14940294 71 5.90e-06 TTAATCGCTG tttttttt tttttttatt chr3L:1995964-1996084 95 5.90e-06 TTTTTCTTTT TTTTTTTT GGTCCTTCCG chrX:6894360-6894480 68 5.90e-06 GGAAAATGTT TTTTTTTT TCTCTCTCTC chr2L:3925025-3925145 33 5.90e-06 cctttccttc tttttttt cctGGCACTT chrX:14145592-14145712 71 5.90e-06 tttctttttt tttttttt ttttGCTCAA chrX:9716987-9717107 92 5.90e-06 TTCCTTTTTT TTTTTTTT GGCTTTTTTG chrX:8179120-8179240 20 5.90e-06 ATTGCTCATA TTTTTTTT CCGCCGCGTG chrX:2640964-2641084 16 1.92e-05 TGCGGGGCAA TTTATTTT GTTGACACCG chr2L:1619674-1619794 12 1.92e-05 ttcctttttc ttttcttt ttctTGCTCG chrX:6717731-6717851 48 1.92e-05 GTTTAATTTA TTTATTTT ACTCACGCAC chrX:12050467-12050587 7 1.92e-05 TGACAG TTTTCTTT TGCCCTGACG chr3L:2688672-2688792 82 1.92e-05 ctttcttttc ttttcttt gctttgccct chr3L:7258448-7258568 32 1.92e-05 CCGTTATAGC TTTTCTTT AGTTCTGCCA chr3L:18628669-18628789 86 2.51e-05 ATTTGCAAAT TTTTTATT GGCCGTTTCG chr2R:6893758-6893878 97 2.51e-05 TATGCCAGCT TTTTTATT GTATCTTAAG chrX:12126965-12127085 38 3.99e-05 GTGAGAGTTG TTCTTTTT TCCAGCTAGC chr3L:9884782-9884902 26 3.99e-05 cttctccttc ttcttttt cttcttGAGC chrX:15259434-15259554 102 3.99e-05 GGTCTGTGGG TTGTTTTT AAAAGCATTT chr3L:20260741-20260861 17 4.73e-05 AGCTACTCGA TGTTTTTT GGAAACACAC chr2L:14835381-14835501 89 4.73e-05 TGGTGTACGA TGTTTTTT GCTGTTTGCC chr2R:13765229-13765349 103 6.22e-05 GATTCGGTAT TTTACTTT GGGATTATTT chr3R:6116988-6117108 82 7.55e-05 CACGTTCAAT TTTTCATT ACTCACGCCT chrX:18770724-18770844 28 8.30e-05 TCCAAATTGG TTTTTTCT GTTTAACATT chr3R:2413581-2413701 45 1.16e-04 catcttgtta ttctCTTT ATCTCTTTAC chr2R:16077575-16077695 83 1.16e-04 GCAGCTTTAG TTGATTTT TAAGCCAGCT chrX:17009191-17009311 35 1.16e-04 ACACTTCACA TTCATTTT GCATTTTTGG chr2R:10334936-10335056 57 1.16e-04 GGTCCGATGT TTGATTTT GATTAACGAC chrX:20942197-20942317 20 1.33e-04 TGAGAGTGTG TGTATTTT CCCATATTTC chr3R:14430031-14430151 14 1.48e-04 CTTTATGCAG TTGTTATT TCGCTGcccc chrX:11424118-11424238 86 1.55e-04 AAACGAACAT TGTTTATT TCTGATCCGC chrX:1977326-1977446 30 1.72e-04 GTCGATGTTG TTTTCCTT GTTTTCCCGC chrX:9940715-9940835 91 1.72e-04 TCGGCCTCTG TTTTCCTT TGCCTTGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:18129547-18129667 5.9e-06 25_[+1]_87 chrX:12812920-12813040 5.9e-06 90_[+1]_22 chr2R:5848411-5848531 5.9e-06 19_[+1]_93 chr2R:20600255-20600375 5.9e-06 36_[+1]_76 chr3R:9270924-9271044 5.9e-06 48_[+1]_64 chr2R:14690663-14690783 5.9e-06 64_[+1]_48 chrX:9767810-9767930 5.9e-06 76_[+1]_36 chr2L:3219754-3219874 5.9e-06 36_[+1]_76 chr3R:9322705-9322825 5.9e-06 63_[+1]_49 chrX:14125393-14125513 5.9e-06 82_[+1]_30 chr3R:8587979-8588099 5.9e-06 38_[+1]_74 chrX:13315788-13315908 5.9e-06 48_[+1]_64 chr3R:22660556-22660676 5.9e-06 5_[+1]_107 chr2L:14940174-14940294 5.9e-06 70_[+1]_42 chr3L:1995964-1996084 5.9e-06 94_[+1]_18 chrX:6894360-6894480 5.9e-06 67_[+1]_45 chr2L:3925025-3925145 5.9e-06 32_[+1]_80 chrX:14145592-14145712 5.9e-06 70_[+1]_42 chrX:9716987-9717107 5.9e-06 91_[+1]_21 chrX:8179120-8179240 5.9e-06 19_[+1]_93 chrX:2640964-2641084 1.9e-05 15_[+1]_97 chr2L:1619674-1619794 1.9e-05 11_[+1]_101 chrX:6717731-6717851 1.9e-05 47_[+1]_65 chrX:12050467-12050587 1.9e-05 6_[+1]_106 chr3L:2688672-2688792 1.9e-05 81_[+1]_31 chr3L:7258448-7258568 1.9e-05 31_[+1]_81 chr3L:18628669-18628789 2.5e-05 85_[+1]_27 chr2R:6893758-6893878 2.5e-05 96_[+1]_16 chrX:12126965-12127085 4e-05 37_[+1]_75 chr3L:9884782-9884902 4e-05 25_[+1]_87 chrX:15259434-15259554 4e-05 101_[+1]_11 chr3L:20260741-20260861 4.7e-05 16_[+1]_96 chr2L:14835381-14835501 4.7e-05 88_[+1]_24 chr2R:13765229-13765349 6.2e-05 102_[+1]_10 chr3R:6116988-6117108 7.6e-05 81_[+1]_31 chrX:18770724-18770844 8.3e-05 27_[+1]_85 chr3R:2413581-2413701 0.00012 44_[+1]_68 chr2R:16077575-16077695 0.00012 82_[+1]_30 chrX:17009191-17009311 0.00012 34_[+1]_78 chr2R:10334936-10335056 0.00012 56_[+1]_56 chrX:20942197-20942317 0.00013 19_[+1]_93 chr3R:14430031-14430151 0.00015 13_[+1]_99 chrX:11424118-11424238 0.00016 85_[+1]_27 chrX:1977326-1977446 0.00017 29_[+1]_83 chrX:9940715-9940835 0.00017 90_[+1]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTT width=8 seqs=45 chr3R:18129547-18129667 ( 26) TTTTTTTT 1 chrX:12812920-12813040 ( 91) TTTTTTTT 1 chr2R:5848411-5848531 ( 20) TTTTTTTT 1 chr2R:20600255-20600375 ( 37) TTTTTTTT 1 chr3R:9270924-9271044 ( 49) TTTTTTTT 1 chr2R:14690663-14690783 ( 65) TTTTTTTT 1 chrX:9767810-9767930 ( 77) TTTTTTTT 1 chr2L:3219754-3219874 ( 37) TTTTTTTT 1 chr3R:9322705-9322825 ( 64) TTTTTTTT 1 chrX:14125393-14125513 ( 83) TTTTTTTT 1 chr3R:8587979-8588099 ( 39) TTTTTTTT 1 chrX:13315788-13315908 ( 49) TTTTTTTT 1 chr3R:22660556-22660676 ( 6) TTTTTTTT 1 chr2L:14940174-14940294 ( 71) TTTTTTTT 1 chr3L:1995964-1996084 ( 95) TTTTTTTT 1 chrX:6894360-6894480 ( 68) TTTTTTTT 1 chr2L:3925025-3925145 ( 33) TTTTTTTT 1 chrX:14145592-14145712 ( 71) TTTTTTTT 1 chrX:9716987-9717107 ( 92) TTTTTTTT 1 chrX:8179120-8179240 ( 20) TTTTTTTT 1 chrX:2640964-2641084 ( 16) TTTATTTT 1 chr2L:1619674-1619794 ( 12) TTTTCTTT 1 chrX:6717731-6717851 ( 48) TTTATTTT 1 chrX:12050467-12050587 ( 7) TTTTCTTT 1 chr3L:2688672-2688792 ( 82) TTTTCTTT 1 chr3L:7258448-7258568 ( 32) TTTTCTTT 1 chr3L:18628669-18628789 ( 86) TTTTTATT 1 chr2R:6893758-6893878 ( 97) TTTTTATT 1 chrX:12126965-12127085 ( 38) TTCTTTTT 1 chr3L:9884782-9884902 ( 26) TTCTTTTT 1 chrX:15259434-15259554 ( 102) TTGTTTTT 1 chr3L:20260741-20260861 ( 17) TGTTTTTT 1 chr2L:14835381-14835501 ( 89) TGTTTTTT 1 chr2R:13765229-13765349 ( 103) TTTACTTT 1 chr3R:6116988-6117108 ( 82) TTTTCATT 1 chrX:18770724-18770844 ( 28) TTTTTTCT 1 chr3R:2413581-2413701 ( 45) TTCTCTTT 1 chr2R:16077575-16077695 ( 83) TTGATTTT 1 chrX:17009191-17009311 ( 35) TTCATTTT 1 chr2R:10334936-10335056 ( 57) TTGATTTT 1 chrX:20942197-20942317 ( 20) TGTATTTT 1 chr3R:14430031-14430151 ( 14) TTGTTATT 1 chrX:11424118-11424238 ( 86) TGTTTATT 1 chrX:1977326-1977446 ( 30) TTTTCCTT 1 chrX:9940715-9940835 ( 91) TTTTCCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3794 E= 9.5e-026 -1214 -1214 -1214 217 -1214 -1214 -164 204 -1214 -165 -164 189 -51 -1214 -1214 193 -1214 -48 -1214 185 -100 -265 -1214 193 -1214 -365 -1214 214 -1214 -1214 -1214 217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 9.5e-026 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.088889 0.911111 0.000000 0.088889 0.088889 0.822222 0.155556 0.000000 0.000000 0.844444 0.000000 0.200000 0.000000 0.800000 0.111111 0.044444 0.000000 0.844444 0.000000 0.022222 0.000000 0.977778 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 regular expression -------------------------------------------------------------------------------- TTTT[TC]TTT -------------------------------------------------------------------------------- Time 7.83 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGGGGG MEME-2 width = 8 sites = 80 llr = 644 E-value = 3.2e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGGGGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::1::2:: pos.-specific C ::11:1:: probability G aa89a7a9 matrix T :::::::1 bits 2.2 2.0 * * * 1.7 ** * * 1.5 ** * * Relative 1.3 ** ** ** Entropy 1.1 ***** ** (11.6 bits) 0.9 ***** ** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17660396-17660516 43 3.47e-05 CGAGGGTCTT GGGGGGGG GGGGGGCGGT chr3R:10216014-10216134 85 3.47e-05 GTTTCCCTGA GGGGGGGG GGGGGGTGCA chrX:12126965-12127085 4 3.47e-05 ggg gggggggg gggggTCGCG chr3L:8257596-8257716 56 3.47e-05 TTGCGGGTGG GGGGGGGG CGGGGGTTAG chr3L:7412780-7412900 67 3.47e-05 GGGTTggggg gggggggg gggggggAAA chr3R:10674782-10674902 30 3.47e-05 AGGGGAGGGG GGGGGGGG GTGTCCAACT chr2R:15361748-15361868 79 3.47e-05 AAAGGGGGGG GGGGGGGG TTGGAATGCC chrX:2640964-2641084 54 3.47e-05 ggtggggggg gggggggg ggTAGGTAGG chr2R:8828397-8828517 43 3.47e-05 AAAAGCAGCG GGGGGGGG GGGGGCGGCA chrX:12251000-12251120 27 3.47e-05 CATTGGTTGA GGGGGGGG GGGGGGGGTT chr2L:19702604-19702724 24 3.47e-05 ATGCGCGTAA GGGGGGGG AGGGGGTGTG chrX:17009191-17009311 74 3.47e-05 TTGGTGGGGG GGGGGGGG GGTTTAAAAT chrX:933321-933441 43 3.47e-05 AGGAGGGGGG GGGGGGGG GTCGCGGAAG chr2R:22576094-22576214 5 3.47e-05 GGGG GGGGGGGG AGGCGGTTTG chr3R:9322705-9322825 78 3.47e-05 TTTTGGAGGG GGGGGGGG GGGGCTCTGG chr3L:1931772-1931892 51 3.47e-05 GAGTGGGGGG GGGGGGGG CCGGACTGCA chrX:10184076-10184196 34 3.47e-05 TGCTTTGGTG GGGGGGGG AGGGGGGGTG chr2L:12970053-12970173 28 3.47e-05 CGAGCggggg gggggggg gggggTCGAA chr2R:7470619-7470739 60 3.47e-05 TGTATAGGGG GGGGGGGG GGGGTAATGG chr3R:17632924-17633044 20 3.47e-05 GACGAACggg gggggggg gggggggggA chr2R:13045524-13045644 3 3.47e-05 GG GGGGGGGG ATGAATCACA chrX:17807442-17807562 36 3.47e-05 GGGGAGGGGG GGGGGGGG TTCCAGGGTC chr2L:3448573-3448693 42 3.47e-05 TGACGTgggg gggggggg ggggggggtg chrX:16865683-16865803 33 3.47e-05 CGGAGTTggt gggggggg gggggggggA chrX:13944299-13944419 48 3.47e-05 GGGAGAGGGG GGGGGGGG GGGAGATGCC chr3R:6968195-6968315 56 3.47e-05 GGTTGATGGG GGGGGGGG GGTGTCGGAG chr2R:10924190-10924310 77 3.47e-05 gagggggggg gggggggg ATTTTATGCA chr3R:6891170-6891290 6 3.47e-05 ggggg gggggggg gggCTGAGAG chrX:18732190-18732310 72 3.47e-05 CACTGCCATT gggggggg gggggggggg chr2R:13490695-13490815 14 3.47e-05 tgtggggggg gggggggg ggggttgtgt chr2R:20950740-20950860 22 3.47e-05 Cggggggggg gggggggg AGAATCAAGG chr2L:1306236-1306356 57 3.47e-05 TGGCCGCGGA GGGGGGGG GGGGGGCTTT chr3L:11025194-11025314 4 3.47e-05 TGG GGGGGGGG GGGGCATATT chr2R:15548633-15548753 46 3.47e-05 TACACCCGGG GGGGGGGG GGCAGTGGGC chr3L:10924619-10924739 47 3.47e-05 GCGGGAAAGG GGGGGGGG GACCAGAACT chrX:12700907-12701027 87 3.47e-05 GCACCAACAG GGGGGGGG GGGGGGTGCT chr2R:23308068-23308188 61 6.24e-05 Cggcggggga gggggagg ggatgggcag chr3L:17386059-17386179 34 6.24e-05 GGGCCTCGTT GGGGGAGG AGTCCTTGGT chr2R:13765229-13765349 57 6.24e-05 AAATGGGGCG GGGGGAGG GGGCGCTACG chr2R:20867376-20867496 41 6.24e-05 AGGGGGGGAG GGGGGAGG GGTAAGCATG chr3L:12162436-12162556 36 6.24e-05 GTGACGGGAG GGGGGAGG GGGGAGGGTG chrX:9847672-9847792 58 6.24e-05 TGGGCAGCGG GGGGGAGG GGAACCCTTA chr3R:29325195-29325315 46 6.24e-05 GAAAGGGGAG GGGGGAGG GGGGGTGTGG chr3R:28490126-28490246 2 9.75e-05 T GGGGGCGG AGGAGCGGGC chr2L:2040079-2040199 20 9.75e-05 CCTCCAGCTC GGGGGCGG GGGCCAGTGG chr2L:1087748-1087868 56 9.75e-05 CGTTGTCAGC GGGGGCGG GTGCGGGGGC chr2R:6914654-6914774 94 9.75e-05 cgggggcagc gggggcgg cggcgaggcg chrX:11720772-11720892 58 9.75e-05 CGGGGGTCCC GGGGGCGG AGCAGCTGCT chrX:10295342-10295462 95 1.25e-04 GACTGCCGAC GGGGGGGT AAAACTTTTG chr2R:12744404-12744524 1 1.25e-04 . GGGGGGGT TCAGTGTAGT chr3L:8874454-8874574 34 1.25e-04 TGAAACGGGT GGGGGGGT GCTCTGTTTC chr2L:6208648-6208768 65 1.60e-04 CCGGCTCCGA GGCGGGGG CCGCCACAGG chr3R:19236951-19237071 1 1.60e-04 . GGCGGGGG CAGCAGATTG chr2R:6067603-6067723 49 1.60e-04 AGGTGGTGCG GGCGGGGG ATCCTCCGGA chr2L:806340-806460 40 1.60e-04 ACCACCCGCC GGCGGGGG GTTTCTTTGG chr3R:15951710-15951830 75 1.95e-04 TCGCCGGAGA GGGCGGGG CCGCCGCCAG chr2R:19330597-19330717 48 1.95e-04 GGCCCCGCGA GGGCGGGG TGGGGCGTTG chr2L:18543485-18543605 42 1.95e-04 GGCTGATAGT gggcgggg agtggctggt chrX:9668101-9668221 95 1.95e-04 cacacacATG GGGCGGGG TCCTTAGCTA chr2R:18872857-18872977 3 2.23e-04 GA ggaggggg ggtggggggt chrX:12044944-12045064 2 2.23e-04 G GGAGGGGG CGTAGCTGGC chr2L:7923340-7923460 63 2.45e-04 AATGGGCACC GGGGGAGT GTGTGCAGGT chr3R:16885752-16885872 10 2.45e-04 ATATCGTTT GGGGGAGT CCTGTAATCT chr2L:3874538-3874658 79 2.73e-04 ACTGCCcgga ggcggagg tggcggcggt chr2R:24009118-24009238 11 2.73e-04 GGTGggcggc ggcggagg cggcggcgag chr3L:19917205-19917325 73 3.02e-04 TGATCGCCAT GGGCGAGG ACATTGGTGC chr2R:8387999-8388119 110 3.02e-04 acgagaacga gggcgagg gcg chrX:20748978-20749098 34 3.24e-04 aaaaaaaaaa GGAGGAGG AAAAGACGGA chrX:19025758-19025878 108 3.24e-04 aggaggagga ggaggagg aggag chr2R:22967109-22967229 91 3.52e-04 GCAAGGCACG GGGGGCGT GGCAGTCTGG chrX:15215806-15215926 59 3.52e-04 TTTGCCGCCC GGGGGCGT CGCATAAGCG chrX:17937777-17937897 56 4.22e-04 aaaagaaaaa GGGGGGGC CATATTCCCA chr2L:20441952-20442072 54 4.22e-04 GCCGCCGGTC GGGGGGGC TTGGGCGGTG chr2R:8389341-8389461 29 4.22e-04 CCAATGTCCT GGCGGCGG CCACCGCCTC chr3R:30031975-30032095 13 4.22e-04 GATGCAGGAG GGCGGCGG ATCCCTCGGC chr2L:8103230-8103350 44 4.58e-04 TATcgggagc gggcgcgg gcgcaggcgc chr3L:19653689-19653809 75 4.86e-04 ggtgcggCGA GGAGGCGG CCAGGTGGCT chrX:14125393-14125513 10 5.42e-04 CTGCAATAT GGGTGGGG TTCGGGTTTT chr3L:12708220-12708340 86 5.98e-04 gcagaccgca gTGGGGGG CACCGCGAAG chr3R:13329534-13329654 54 5.98e-04 ACCTCCTGGT GGGCGGGT GATGCGCGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17660396-17660516 3.5e-05 42_[+2]_70 chr3R:10216014-10216134 3.5e-05 84_[+2]_28 chrX:12126965-12127085 3.5e-05 3_[+2]_109 chr3L:8257596-8257716 3.5e-05 55_[+2]_57 chr3L:7412780-7412900 3.5e-05 66_[+2]_46 chr3R:10674782-10674902 3.5e-05 29_[+2]_83 chr2R:15361748-15361868 3.5e-05 78_[+2]_34 chrX:2640964-2641084 3.5e-05 53_[+2]_59 chr2R:8828397-8828517 3.5e-05 42_[+2]_70 chrX:12251000-12251120 3.5e-05 26_[+2]_86 chr2L:19702604-19702724 3.5e-05 23_[+2]_89 chrX:17009191-17009311 3.5e-05 73_[+2]_39 chrX:933321-933441 3.5e-05 42_[+2]_70 chr2R:22576094-22576214 3.5e-05 4_[+2]_108 chr3R:9322705-9322825 3.5e-05 77_[+2]_35 chr3L:1931772-1931892 3.5e-05 50_[+2]_62 chrX:10184076-10184196 3.5e-05 33_[+2]_79 chr2L:12970053-12970173 3.5e-05 27_[+2]_85 chr2R:7470619-7470739 3.5e-05 59_[+2]_53 chr3R:17632924-17633044 3.5e-05 19_[+2]_93 chr2R:13045524-13045644 3.5e-05 2_[+2]_110 chrX:17807442-17807562 3.5e-05 35_[+2]_77 chr2L:3448573-3448693 3.5e-05 41_[+2]_71 chrX:16865683-16865803 3.5e-05 32_[+2]_80 chrX:13944299-13944419 3.5e-05 47_[+2]_65 chr3R:6968195-6968315 3.5e-05 55_[+2]_57 chr2R:10924190-10924310 3.5e-05 76_[+2]_36 chr3R:6891170-6891290 3.5e-05 5_[+2]_107 chrX:18732190-18732310 3.5e-05 71_[+2]_41 chr2R:13490695-13490815 3.5e-05 13_[+2]_99 chr2R:20950740-20950860 3.5e-05 21_[+2]_91 chr2L:1306236-1306356 3.5e-05 56_[+2]_56 chr3L:11025194-11025314 3.5e-05 3_[+2]_109 chr2R:15548633-15548753 3.5e-05 45_[+2]_67 chr3L:10924619-10924739 3.5e-05 46_[+2]_66 chrX:12700907-12701027 3.5e-05 86_[+2]_26 chr2R:23308068-23308188 6.2e-05 60_[+2]_52 chr3L:17386059-17386179 6.2e-05 33_[+2]_79 chr2R:13765229-13765349 6.2e-05 56_[+2]_56 chr2R:20867376-20867496 6.2e-05 40_[+2]_72 chr3L:12162436-12162556 6.2e-05 35_[+2]_77 chrX:9847672-9847792 6.2e-05 57_[+2]_55 chr3R:29325195-29325315 6.2e-05 45_[+2]_67 chr3R:28490126-28490246 9.7e-05 1_[+2]_111 chr2L:2040079-2040199 9.7e-05 19_[+2]_93 chr2L:1087748-1087868 9.7e-05 55_[+2]_57 chr2R:6914654-6914774 9.7e-05 93_[+2]_19 chrX:11720772-11720892 9.7e-05 57_[+2]_55 chrX:10295342-10295462 0.00013 94_[+2]_18 chr2R:12744404-12744524 0.00013 [+2]_112 chr3L:8874454-8874574 0.00013 33_[+2]_79 chr2L:6208648-6208768 0.00016 64_[+2]_48 chr3R:19236951-19237071 0.00016 [+2]_112 chr2R:6067603-6067723 0.00016 48_[+2]_64 chr2L:806340-806460 0.00016 39_[+2]_73 chr3R:15951710-15951830 0.0002 74_[+2]_38 chr2R:19330597-19330717 0.0002 47_[+2]_65 chr2L:18543485-18543605 0.0002 41_[+2]_71 chrX:9668101-9668221 0.0002 94_[+2]_18 chr2R:18872857-18872977 0.00022 2_[+2]_110 chrX:12044944-12045064 0.00022 1_[+2]_111 chr2L:7923340-7923460 0.00025 62_[+2]_50 chr3R:16885752-16885872 0.00025 9_[+2]_103 chr2L:3874538-3874658 0.00027 78_[+2]_34 chr2R:24009118-24009238 0.00027 10_[+2]_102 chr3L:19917205-19917325 0.0003 72_[+2]_40 chr2R:8387999-8388119 0.0003 109_[+2]_3 chrX:20748978-20749098 0.00032 33_[+2]_79 chrX:19025758-19025878 0.00032 107_[+2]_5 chr2R:22967109-22967229 0.00035 90_[+2]_22 chrX:15215806-15215926 0.00035 58_[+2]_54 chrX:17937777-17937897 0.00042 55_[+2]_57 chr2L:20441952-20442072 0.00042 53_[+2]_59 chr2R:8389341-8389461 0.00042 28_[+2]_84 chr3R:30031975-30032095 0.00042 12_[+2]_100 chr2L:8103230-8103350 0.00046 43_[+2]_69 chr3L:19653689-19653809 0.00049 74_[+2]_38 chrX:14125393-14125513 0.00054 9_[+2]_103 chr3L:12708220-12708340 0.0006 85_[+2]_27 chr3R:13329534-13329654 0.0006 53_[+2]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGGGGG width=8 seqs=80 chr2R:17660396-17660516 ( 43) GGGGGGGG 1 chr3R:10216014-10216134 ( 85) GGGGGGGG 1 chrX:12126965-12127085 ( 4) GGGGGGGG 1 chr3L:8257596-8257716 ( 56) GGGGGGGG 1 chr3L:7412780-7412900 ( 67) GGGGGGGG 1 chr3R:10674782-10674902 ( 30) GGGGGGGG 1 chr2R:15361748-15361868 ( 79) GGGGGGGG 1 chrX:2640964-2641084 ( 54) GGGGGGGG 1 chr2R:8828397-8828517 ( 43) GGGGGGGG 1 chrX:12251000-12251120 ( 27) GGGGGGGG 1 chr2L:19702604-19702724 ( 24) GGGGGGGG 1 chrX:17009191-17009311 ( 74) GGGGGGGG 1 chrX:933321-933441 ( 43) GGGGGGGG 1 chr2R:22576094-22576214 ( 5) GGGGGGGG 1 chr3R:9322705-9322825 ( 78) GGGGGGGG 1 chr3L:1931772-1931892 ( 51) GGGGGGGG 1 chrX:10184076-10184196 ( 34) GGGGGGGG 1 chr2L:12970053-12970173 ( 28) GGGGGGGG 1 chr2R:7470619-7470739 ( 60) GGGGGGGG 1 chr3R:17632924-17633044 ( 20) GGGGGGGG 1 chr2R:13045524-13045644 ( 3) GGGGGGGG 1 chrX:17807442-17807562 ( 36) GGGGGGGG 1 chr2L:3448573-3448693 ( 42) GGGGGGGG 1 chrX:16865683-16865803 ( 33) GGGGGGGG 1 chrX:13944299-13944419 ( 48) GGGGGGGG 1 chr3R:6968195-6968315 ( 56) GGGGGGGG 1 chr2R:10924190-10924310 ( 77) GGGGGGGG 1 chr3R:6891170-6891290 ( 6) GGGGGGGG 1 chrX:18732190-18732310 ( 72) GGGGGGGG 1 chr2R:13490695-13490815 ( 14) GGGGGGGG 1 chr2R:20950740-20950860 ( 22) GGGGGGGG 1 chr2L:1306236-1306356 ( 57) GGGGGGGG 1 chr3L:11025194-11025314 ( 4) GGGGGGGG 1 chr2R:15548633-15548753 ( 46) GGGGGGGG 1 chr3L:10924619-10924739 ( 47) GGGGGGGG 1 chrX:12700907-12701027 ( 87) GGGGGGGG 1 chr2R:23308068-23308188 ( 61) GGGGGAGG 1 chr3L:17386059-17386179 ( 34) GGGGGAGG 1 chr2R:13765229-13765349 ( 57) GGGGGAGG 1 chr2R:20867376-20867496 ( 41) GGGGGAGG 1 chr3L:12162436-12162556 ( 36) GGGGGAGG 1 chrX:9847672-9847792 ( 58) GGGGGAGG 1 chr3R:29325195-29325315 ( 46) GGGGGAGG 1 chr3R:28490126-28490246 ( 2) GGGGGCGG 1 chr2L:2040079-2040199 ( 20) GGGGGCGG 1 chr2L:1087748-1087868 ( 56) GGGGGCGG 1 chr2R:6914654-6914774 ( 94) GGGGGCGG 1 chrX:11720772-11720892 ( 58) GGGGGCGG 1 chrX:10295342-10295462 ( 95) GGGGGGGT 1 chr2R:12744404-12744524 ( 1) GGGGGGGT 1 chr3L:8874454-8874574 ( 34) GGGGGGGT 1 chr2L:6208648-6208768 ( 65) GGCGGGGG 1 chr3R:19236951-19237071 ( 1) GGCGGGGG 1 chr2R:6067603-6067723 ( 49) GGCGGGGG 1 chr2L:806340-806460 ( 40) GGCGGGGG 1 chr3R:15951710-15951830 ( 75) GGGCGGGG 1 chr2R:19330597-19330717 ( 48) GGGCGGGG 1 chr2L:18543485-18543605 ( 42) GGGCGGGG 1 chrX:9668101-9668221 ( 95) GGGCGGGG 1 chr2R:18872857-18872977 ( 3) GGAGGGGG 1 chrX:12044944-12045064 ( 2) GGAGGGGG 1 chr2L:7923340-7923460 ( 63) GGGGGAGT 1 chr3R:16885752-16885872 ( 10) GGGGGAGT 1 chr2L:3874538-3874658 ( 79) GGCGGAGG 1 chr2R:24009118-24009238 ( 11) GGCGGAGG 1 chr3L:19917205-19917325 ( 73) GGGCGAGG 1 chr2R:8387999-8388119 ( 110) GGGCGAGG 1 chrX:20748978-20749098 ( 34) GGAGGAGG 1 chrX:19025758-19025878 ( 108) GGAGGAGG 1 chr2R:22967109-22967229 ( 91) GGGGGCGT 1 chrX:15215806-15215926 ( 59) GGGGGCGT 1 chrX:17937777-17937897 ( 56) GGGGGGGC 1 chr2L:20441952-20442072 ( 54) GGGGGGGC 1 chr2R:8389341-8389461 ( 29) GGCGGCGG 1 chr3R:30031975-30032095 ( 13) GGCGGCGG 1 chr2L:8103230-8103350 ( 44) GGGCGCGG 1 chr3L:19653689-19653809 ( 75) GGAGGCGG 1 chrX:14125393-14125513 ( 10) GGGTGGGG 1 chr3L:12708220-12708340 ( 86) GTGGGGGG 1 chr3R:13329534-13329654 ( 54) GGGCGGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.40533 E= 3.2e-028 -1297 -1297 185 -1297 -1297 -1297 183 -414 -183 -148 160 -1297 -1297 -148 168 -414 -1297 -1297 185 -1297 -24 -102 128 -1297 -1297 -1297 185 -1297 -1297 -348 166 -115 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 80 E= 3.2e-028 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.987500 0.012500 0.062500 0.100000 0.837500 0.000000 0.000000 0.100000 0.887500 0.012500 0.000000 0.000000 1.000000 0.000000 0.187500 0.137500 0.675000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.025000 0.875000 0.100000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGGG MEME-2 regular expression -------------------------------------------------------------------------------- GGGGGGGG -------------------------------------------------------------------------------- Time 14.34 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCCCCC MEME-3 width = 8 sites = 90 llr = 698 E-value = 5.8e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCCCCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::2::::: pos.-specific C aa5a87aa probability G ::1:21:: matrix T ::2::2:: bits 2.2 2.0 1.7 ** * ** 1.5 ** * ** Relative 1.3 ** * ** Entropy 1.1 ** ** ** (11.2 bits) 0.9 ** ** ** 0.7 ** ***** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel CCCCCCCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11424118-11424238 33 3.78e-05 GGGGTCGCCC CCCCCCCC CAACGCTTTA chr2R:8201172-8201292 17 3.78e-05 CAACACCCCC CCCCCCCC CATTCCCCAC chr2L:9359104-9359224 60 3.78e-05 TCCTCCCCCC CCCCCCCC TTGTCAGTAA chr2R:5848411-5848531 35 3.78e-05 TTTACCGCCC CCCCCCCC CCCGGCCAAA chr2L:10960378-10960498 67 3.78e-05 CCAGACCTCC CCCCCCCC TCACCCCAAG chr3R:13503506-13503626 53 3.78e-05 ACCAACGAAc cccccccc cccccccccA chr3L:18492800-18492920 53 3.78e-05 ctcctcctcc cccccccc cCTTTCCCGG chr3R:25666161-25666281 101 3.78e-05 GCGATGTAAC CCCCCCCC CCCCTTGCCG chr3L:5324981-5325101 65 3.78e-05 GTCGCCTGCC CCCCCCCC CCCCCAAAAC chr3R:29330370-29330490 13 3.78e-05 CCCCCTACTC CCCCCCCC TCCGCCGCAA chr3R:17792832-17792952 51 3.78e-05 CATACGACCC CCCCCCCC TTCCCCTTCT chr2R:6566178-6566298 61 3.78e-05 AGGGGccacc cccccccc cacccccctc chr2R:22065993-22066113 69 3.78e-05 CATTTGCGCC CCCCCCCC CCTCCCCTCC chr2L:12849824-12849944 34 3.78e-05 cccccccccc cccccccc AACAACACAA chr2R:17312910-17313030 65 3.78e-05 CGcccccccc cccccccc cccGGACCGT chr3L:18628669-18628789 8 3.78e-05 CCCATCC CCCCCCCC CCCTCGGTTC chr2L:7923340-7923460 105 3.78e-05 AAATACCCTC CCCCCCCC CTCAGGGA chr2L:14940174-14940294 30 3.78e-05 CACCACCCGC CCCCCCCC CTGGGCCAAC chr3L:3135338-3135458 51 3.78e-05 AGGATCTGCA CCCCCCCC CCCCCCCCTT chr3R:22103946-22104066 61 3.78e-05 CAACCCCCCC CCCCCCCC ACTCACTCAT chr3R:6952184-6952304 77 3.78e-05 AACCTTAccc cccccccc caccccccTA chr2R:11111166-11111286 47 3.78e-05 Gccccccccc cccccccc cccccGTTAA chr2L:9864032-9864152 80 3.78e-05 ATAAcccccc cccccccc cccATGGACC chrX:14102234-14102354 62 3.78e-05 acacacacCC CCCCCCCC CCTCACCGAC chr3L:20260741-20260861 47 3.78e-05 CAAccccccc cccccccc cccTGAGAAG chr2L:5783018-5783138 52 3.78e-05 CCTCCAACCC CCCCCCCC CCCCTCGATA chr3L:22308754-22308874 58 3.78e-05 ATcccccccc cccccccc cccTCTGTGA chr2L:14835381-14835501 47 3.78e-05 ATCTGCCCCC CCCCCCCC CTTCCCATCG chr3R:26781102-26781222 47 3.78e-05 GCACACCTGC CCCCCCCC CCTCCCCCCT chr3R:16885752-16885872 50 3.78e-05 CGAACCCCTG CCCCCCCC CCCCCCATTA chrX:4313369-4313489 48 3.78e-05 GCCACACACA cccccccc cccccccccc chr2R:11028258-11028378 56 3.78e-05 GGGGTTCCCC CCCCCCCC CCCACGACCC chr3R:4682757-4682877 63 3.78e-05 Tccccccccc cccccccc ccGTCCCAGT chr3R:14430031-14430151 33 3.78e-05 CGCTGccccc cccccccc ccccccATCA chr2R:10690658-10690778 85 3.78e-05 Tccccccccc cccccccc cccccGGAAT chr3L:7258448-7258568 61 3.78e-05 CCGCACCACC CCCCCCCC CTCCCCGGGT chr2R:7598445-7598565 65 3.78e-05 tccccccccc cccccccc cGACACCGTG chr3R:22831177-22831297 63 3.78e-05 CAcccccccc cccccccc accAGAAATG chr2R:16077575-16077695 57 9.77e-05 CCACCACCCC CCTCCCCC CTGCCCATGC chr2L:19702604-19702724 78 9.77e-05 TGGGTGATAT CCTCCCCC GTAAATCCCA chrX:2819026-2819146 113 9.77e-05 TTAAGAGCCC CCACCCCC chr3R:30929573-30929693 85 9.77e-05 TACTCCGCCC CCTCCCCC GTGTCGAGGT chrX:19539807-19539927 76 9.77e-05 CCCCGTCGCC CCTCCCCC CTTCCCATCC chr2R:18192033-18192153 63 1.65e-04 CGGGCCACGC CCCCGCCC CGTTGCCGCC chr3L:21631001-21631121 72 1.65e-04 CTACCCAGTC CCCCGCCC GCCGCCAGAT chr2R:8389341-8389461 49 1.65e-04 ACCGCCTCGC CCCCGCCC TCCTTGCAGG chr3R:13390151-13390271 52 1.65e-04 TCGCCCATTC CCCCGCCC ACTCCCGTTC chr2R:11154986-11155106 18 1.65e-04 CCCGCTCCCG CCCCGCCC ACACAGATCC chrX:6515434-6515554 35 1.65e-04 CAAACGCCCA CCCCGCCC CTCTGCCAAC chr3L:4472114-4472234 81 1.65e-04 CAGCTCCCGC CCCCGCCC CCGTGCAGTC chr3R:11436221-11436341 1 2.02e-04 . CCGCCCCC AGATCCCGCC chr3L:4143247-4143367 89 2.02e-04 ataccctgcg ccgccccc gccgccgccg chr2R:10334936-10335056 7 2.02e-04 CCGCCT CCGCCCCC TGTCCCGCTC chr3R:20927172-20927292 60 2.02e-04 CATACGCCGG CCGCCCCC CACCCGCTCC chrX:9286247-9286367 33 3.09e-04 caccgtacca ccacgccc acccctacca chr2R:7894857-7894977 76 3.09e-04 CAAcccactc ccacgccc gcgcccacgc chr2L:2040079-2040199 7 3.09e-04 CCACGC CCACCTCC AGCTCGGGGG chr3L:8874454-8874574 93 3.09e-04 tgcccctacc cctcctcc tCTGGCCCGT chr3R:12295034-12295154 93 3.09e-04 cccgTGCCCA CCTCCTCC GTGGCCCAAG chr3R:13659030-13659150 59 3.09e-04 TCCGCGTCCG CCACCTCC GCCCTGTCGA chr2L:7236199-7236319 53 3.09e-04 gccaccgcca ccacctcc gGGGCCACTG chrX:16566068-16566188 74 3.09e-04 tcctcctcct cctcctcc tcctcctcct chr2L:5332376-5332496 79 3.09e-04 AAGGTctcct cctcctcc tcctcctcct chr2R:13765229-13765349 7 3.09e-04 CACTTG CCACGCCC TCCGGCGCCC chr3L:19887712-19887832 12 3.09e-04 TTcttctcct cctcctcc tcttcttcct chrX:13580318-13580438 88 3.09e-04 tccttccttc cctcctCC CAATCCCGGG chr3R:13329534-13329654 28 3.09e-04 CTGCCTCCTG CCACGCCC CCCGTCACAC chrX:19025758-19025878 33 3.09e-04 AGCGCTACTC CCTCGCCC AGGATCGTCT chr2R:10609922-10610042 24 3.09e-04 CGAAGCACCT CCACCTCC GCCTTCAACG chrX:16523530-16523650 14 3.09e-04 tcatccttct cctcctcc ttcttttcct chrX:6671326-6671446 24 3.09e-04 TTGGTGAAAT CCTCGCCC GGATCTCAAC chrX:597203-597323 48 3.09e-04 atgctcatgc ccacgccc acggacacgg chr3R:18515191-18515311 45 3.09e-04 tgagggtggc cCACGCCC AGCGGCGACT chrX:5606463-5606583 82 3.09e-04 acgcgcatgt ccacgccc atgccgctca chrX:21429036-21429156 68 4.43e-04 GCCGAAGCCA CCGCCTCC ACGTCCTCCG chr2R:24332992-24333112 37 4.43e-04 TGCTGGCTAG CCGCCTCC TGCAGGTGCC chrX:14719418-14719538 63 4.43e-04 acgcccgcgc ccgcgccc gcccaaaatg chrX:1643779-1643899 65 4.43e-04 gcactcgcat ccgcgccc gcatccgcac chr3R:22277782-22277902 94 5.02e-04 gcgTACTGCA CCACCGCC AGCAGCATGG chr3L:20106148-20106268 93 5.02e-04 GGTCCGGATG CCTCCGCC CGAGGTGCGG chr2R:22733087-22733207 95 5.02e-04 GCGCCCGCGT CCACCGCC TTCCGAATGT chrX:9357003-9357123 68 5.02e-04 GTGCCCATCG CCTCCGCC AGTGAGAAGA chr2R:15361748-15361868 95 5.49e-04 GGTTGGAATG CCACGTCC ATGGTTGTGG chr2L:15238112-15238232 35 5.49e-04 CGGCACACCC CCTCGTCC GCCGGCCCGC chr2L:12908136-12908256 93 5.49e-04 ACCCTTTTGG CCACGTCC AGTCCAGTTT chr2L:10972910-10973030 30 5.79e-04 TCTGTACATG cccccacc accaccacca chr3R:29046576-29046696 100 5.79e-04 GGAAGAGATA CCCCCACC CATCTAGTCA chr3R:15951710-15951830 83 6.53e-04 GAGGGCGGGG CCGCCGCC AGTGGAGCCG chr2R:8387999-8388119 45 6.53e-04 CCAGCActcc ccgccgcc catgcccctg chr2L:3874538-3874658 22 6.53e-04 CGGTATGCCG CCGCCGCC TTCAATGGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11424118-11424238 3.8e-05 32_[+3]_80 chr2R:8201172-8201292 3.8e-05 16_[+3]_96 chr2L:9359104-9359224 3.8e-05 59_[+3]_53 chr2R:5848411-5848531 3.8e-05 34_[+3]_78 chr2L:10960378-10960498 3.8e-05 66_[+3]_46 chr3R:13503506-13503626 3.8e-05 52_[+3]_60 chr3L:18492800-18492920 3.8e-05 52_[+3]_60 chr3R:25666161-25666281 3.8e-05 100_[+3]_12 chr3L:5324981-5325101 3.8e-05 64_[+3]_48 chr3R:29330370-29330490 3.8e-05 12_[+3]_100 chr3R:17792832-17792952 3.8e-05 50_[+3]_62 chr2R:6566178-6566298 3.8e-05 60_[+3]_52 chr2R:22065993-22066113 3.8e-05 68_[+3]_44 chr2L:12849824-12849944 3.8e-05 33_[+3]_79 chr2R:17312910-17313030 3.8e-05 64_[+3]_48 chr3L:18628669-18628789 3.8e-05 7_[+3]_105 chr2L:7923340-7923460 3.8e-05 104_[+3]_8 chr2L:14940174-14940294 3.8e-05 29_[+3]_83 chr3L:3135338-3135458 3.8e-05 50_[+3]_62 chr3R:22103946-22104066 3.8e-05 60_[+3]_52 chr3R:6952184-6952304 3.8e-05 76_[+3]_36 chr2R:11111166-11111286 3.8e-05 46_[+3]_66 chr2L:9864032-9864152 3.8e-05 79_[+3]_33 chrX:14102234-14102354 3.8e-05 61_[+3]_51 chr3L:20260741-20260861 3.8e-05 46_[+3]_66 chr2L:5783018-5783138 3.8e-05 51_[+3]_61 chr3L:22308754-22308874 3.8e-05 57_[+3]_55 chr2L:14835381-14835501 3.8e-05 46_[+3]_66 chr3R:26781102-26781222 3.8e-05 46_[+3]_66 chr3R:16885752-16885872 3.8e-05 49_[+3]_63 chrX:4313369-4313489 3.8e-05 47_[+3]_65 chr2R:11028258-11028378 3.8e-05 55_[+3]_57 chr3R:4682757-4682877 3.8e-05 62_[+3]_50 chr3R:14430031-14430151 3.8e-05 32_[+3]_80 chr2R:10690658-10690778 3.8e-05 84_[+3]_28 chr3L:7258448-7258568 3.8e-05 60_[+3]_52 chr2R:7598445-7598565 3.8e-05 64_[+3]_48 chr3R:22831177-22831297 3.8e-05 62_[+3]_50 chr2R:16077575-16077695 9.8e-05 56_[+3]_56 chr2L:19702604-19702724 9.8e-05 77_[+3]_35 chrX:2819026-2819146 9.8e-05 112_[+3] chr3R:30929573-30929693 9.8e-05 84_[+3]_28 chrX:19539807-19539927 9.8e-05 75_[+3]_37 chr2R:18192033-18192153 0.00017 62_[+3]_50 chr3L:21631001-21631121 0.00017 71_[+3]_41 chr2R:8389341-8389461 0.00017 48_[+3]_64 chr3R:13390151-13390271 0.00017 51_[+3]_61 chr2R:11154986-11155106 0.00017 17_[+3]_95 chrX:6515434-6515554 0.00017 34_[+3]_78 chr3L:4472114-4472234 0.00017 80_[+3]_32 chr3R:11436221-11436341 0.0002 [+3]_112 chr3L:4143247-4143367 0.0002 88_[+3]_24 chr2R:10334936-10335056 0.0002 6_[+3]_106 chr3R:20927172-20927292 0.0002 59_[+3]_53 chrX:9286247-9286367 0.00031 32_[+3]_80 chr2R:7894857-7894977 0.00031 75_[+3]_37 chr2L:2040079-2040199 0.00031 6_[+3]_106 chr3L:8874454-8874574 0.00031 92_[+3]_20 chr3R:12295034-12295154 0.00031 92_[+3]_20 chr3R:13659030-13659150 0.00031 58_[+3]_54 chr2L:7236199-7236319 0.00031 52_[+3]_60 chrX:16566068-16566188 0.00031 73_[+3]_39 chr2L:5332376-5332496 0.00031 78_[+3]_34 chr2R:13765229-13765349 0.00031 6_[+3]_106 chr3L:19887712-19887832 0.00031 11_[+3]_101 chrX:13580318-13580438 0.00031 87_[+3]_25 chr3R:13329534-13329654 0.00031 27_[+3]_85 chrX:19025758-19025878 0.00031 32_[+3]_80 chr2R:10609922-10610042 0.00031 23_[+3]_89 chrX:16523530-16523650 0.00031 13_[+3]_99 chrX:6671326-6671446 0.00031 23_[+3]_89 chrX:597203-597323 0.00031 47_[+3]_65 chr3R:18515191-18515311 0.00031 44_[+3]_68 chrX:5606463-5606583 0.00031 81_[+3]_31 chrX:21429036-21429156 0.00044 67_[+3]_45 chr2R:24332992-24333112 0.00044 36_[+3]_76 chrX:14719418-14719538 0.00044 62_[+3]_50 chrX:1643779-1643899 0.00044 64_[+3]_48 chr3R:22277782-22277902 0.0005 93_[+3]_19 chr3L:20106148-20106268 0.0005 92_[+3]_20 chr2R:22733087-22733207 0.0005 94_[+3]_18 chrX:9357003-9357123 0.0005 67_[+3]_45 chr2R:15361748-15361868 0.00055 94_[+3]_18 chr2L:15238112-15238232 0.00055 34_[+3]_78 chr2L:12908136-12908256 0.00055 92_[+3]_20 chr2L:10972910-10973030 0.00058 29_[+3]_83 chr3R:29046576-29046696 0.00058 99_[+3]_13 chr3R:15951710-15951830 0.00065 82_[+3]_30 chr2R:8387999-8388119 0.00065 44_[+3]_68 chr2L:3874538-3874658 0.00065 21_[+3]_91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCCCCC width=8 seqs=90 chrX:11424118-11424238 ( 33) CCCCCCCC 1 chr2R:8201172-8201292 ( 17) CCCCCCCC 1 chr2L:9359104-9359224 ( 60) CCCCCCCC 1 chr2R:5848411-5848531 ( 35) CCCCCCCC 1 chr2L:10960378-10960498 ( 67) CCCCCCCC 1 chr3R:13503506-13503626 ( 53) CCCCCCCC 1 chr3L:18492800-18492920 ( 53) CCCCCCCC 1 chr3R:25666161-25666281 ( 101) CCCCCCCC 1 chr3L:5324981-5325101 ( 65) CCCCCCCC 1 chr3R:29330370-29330490 ( 13) CCCCCCCC 1 chr3R:17792832-17792952 ( 51) CCCCCCCC 1 chr2R:6566178-6566298 ( 61) CCCCCCCC 1 chr2R:22065993-22066113 ( 69) CCCCCCCC 1 chr2L:12849824-12849944 ( 34) CCCCCCCC 1 chr2R:17312910-17313030 ( 65) CCCCCCCC 1 chr3L:18628669-18628789 ( 8) CCCCCCCC 1 chr2L:7923340-7923460 ( 105) CCCCCCCC 1 chr2L:14940174-14940294 ( 30) CCCCCCCC 1 chr3L:3135338-3135458 ( 51) CCCCCCCC 1 chr3R:22103946-22104066 ( 61) CCCCCCCC 1 chr3R:6952184-6952304 ( 77) CCCCCCCC 1 chr2R:11111166-11111286 ( 47) CCCCCCCC 1 chr2L:9864032-9864152 ( 80) CCCCCCCC 1 chrX:14102234-14102354 ( 62) CCCCCCCC 1 chr3L:20260741-20260861 ( 47) CCCCCCCC 1 chr2L:5783018-5783138 ( 52) CCCCCCCC 1 chr3L:22308754-22308874 ( 58) CCCCCCCC 1 chr2L:14835381-14835501 ( 47) CCCCCCCC 1 chr3R:26781102-26781222 ( 47) CCCCCCCC 1 chr3R:16885752-16885872 ( 50) CCCCCCCC 1 chrX:4313369-4313489 ( 48) CCCCCCCC 1 chr2R:11028258-11028378 ( 56) CCCCCCCC 1 chr3R:4682757-4682877 ( 63) CCCCCCCC 1 chr3R:14430031-14430151 ( 33) CCCCCCCC 1 chr2R:10690658-10690778 ( 85) CCCCCCCC 1 chr3L:7258448-7258568 ( 61) CCCCCCCC 1 chr2R:7598445-7598565 ( 65) CCCCCCCC 1 chr3R:22831177-22831297 ( 63) CCCCCCCC 1 chr2R:16077575-16077695 ( 57) CCTCCCCC 1 chr2L:19702604-19702724 ( 78) CCTCCCCC 1 chrX:2819026-2819146 ( 113) CCACCCCC 1 chr3R:30929573-30929693 ( 85) CCTCCCCC 1 chrX:19539807-19539927 ( 76) CCTCCCCC 1 chr2R:18192033-18192153 ( 63) CCCCGCCC 1 chr3L:21631001-21631121 ( 72) CCCCGCCC 1 chr2R:8389341-8389461 ( 49) CCCCGCCC 1 chr3R:13390151-13390271 ( 52) CCCCGCCC 1 chr2R:11154986-11155106 ( 18) CCCCGCCC 1 chrX:6515434-6515554 ( 35) CCCCGCCC 1 chr3L:4472114-4472234 ( 81) CCCCGCCC 1 chr3R:11436221-11436341 ( 1) CCGCCCCC 1 chr3L:4143247-4143367 ( 89) CCGCCCCC 1 chr2R:10334936-10335056 ( 7) CCGCCCCC 1 chr3R:20927172-20927292 ( 60) CCGCCCCC 1 chrX:9286247-9286367 ( 33) CCACGCCC 1 chr2R:7894857-7894977 ( 76) CCACGCCC 1 chr2L:2040079-2040199 ( 7) CCACCTCC 1 chr3L:8874454-8874574 ( 93) CCTCCTCC 1 chr3R:12295034-12295154 ( 93) CCTCCTCC 1 chr3R:13659030-13659150 ( 59) CCACCTCC 1 chr2L:7236199-7236319 ( 53) CCACCTCC 1 chrX:16566068-16566188 ( 74) CCTCCTCC 1 chr2L:5332376-5332496 ( 79) CCTCCTCC 1 chr2R:13765229-13765349 ( 7) CCACGCCC 1 chr3L:19887712-19887832 ( 12) CCTCCTCC 1 chrX:13580318-13580438 ( 88) CCTCCTCC 1 chr3R:13329534-13329654 ( 28) CCACGCCC 1 chrX:19025758-19025878 ( 33) CCTCGCCC 1 chr2R:10609922-10610042 ( 24) CCACCTCC 1 chrX:16523530-16523650 ( 14) CCTCCTCC 1 chrX:6671326-6671446 ( 24) CCTCGCCC 1 chrX:597203-597323 ( 48) CCACGCCC 1 chr3R:18515191-18515311 ( 45) CCACGCCC 1 chrX:5606463-5606583 ( 82) CCACGCCC 1 chrX:21429036-21429156 ( 68) CCGCCTCC 1 chr2R:24332992-24333112 ( 37) CCGCCTCC 1 chrX:14719418-14719538 ( 63) CCGCGCCC 1 chrX:1643779-1643899 ( 65) CCGCGCCC 1 chr3R:22277782-22277902 ( 94) CCACCGCC 1 chr3L:20106148-20106268 ( 93) CCTCCGCC 1 chr2R:22733087-22733207 ( 95) CCACCGCC 1 chrX:9357003-9357123 ( 68) CCTCCGCC 1 chr2R:15361748-15361868 ( 95) CCACGTCC 1 chr2L:15238112-15238232 ( 35) CCTCGTCC 1 chr2L:12908136-12908256 ( 93) CCACGTCC 1 chr2L:10972910-10973030 ( 30) CCCCCACC 1 chr3R:29046576-29046696 ( 100) CCCCCACC 1 chr3R:15951710-15951830 ( 83) CCGCCGCC 1 chr2R:8387999-8388119 ( 45) CCGCCGCC 1 chr2L:3874538-3874658 ( 22) CCGCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.33748 E= 5.8e-028 -1314 184 -1314 -1314 -1314 184 -1314 -1314 -32 90 -118 -32 -1314 184 -1314 -1314 -1314 146 -25 -1314 -332 137 -183 -32 -1314 184 -1314 -1314 -1314 184 -1314 -1314 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 90 E= 5.8e-028 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.177778 0.522222 0.122222 0.177778 0.000000 1.000000 0.000000 0.000000 0.000000 0.766667 0.233333 0.000000 0.022222 0.722222 0.077778 0.177778 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCCC MEME-3 regular expression -------------------------------------------------------------------------------- CCCC[CG]CCC -------------------------------------------------------------------------------- Time 20.64 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAA MEME-4 width = 8 sites = 47 llr = 417 E-value = 2.8e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 98788aaa pos.-specific C 11:::::: probability G ::111::: matrix T :111:::: bits 2.2 ** 2.0 *** 1.7 * *** 1.5 * *** Relative 1.3 ** ***** Entropy 1.1 ** ***** (12.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17937777-17937897 37 5.90e-06 CGGGTGCaaa aaaaaaaa aaaaagaaaa chrX:11003559-11003679 61 5.90e-06 TGGGCaaaaa aaaaaaaa aaacaaaaaa chr2R:4552748-4552868 59 5.90e-06 aacaaaaaaa aaaaaaaa aggaaaaaga chr3R:6877370-6877490 46 5.90e-06 agaaaaaaaa aaaaaaaa aaaaaCAGAG chrX:20748978-20749098 19 5.90e-06 GCAAGCaaaa aaaaaaaa aaaaaaaGGA chr3L:7824948-7825068 66 5.90e-06 ACTGGAAAGA AAAAAAAA AGGAGAAGAA chrX:9940715-9940835 65 5.90e-06 aaaaaaaaaa aaaaaaaa caagaaGCTC chrX:6894360-6894480 50 5.90e-06 GCGAGCGGCA AAAAAAAA GGAAAATGTT chrX:6515434-6515554 63 5.90e-06 CCaaaaaaaa aaaaaaaa aaaaaggaaa chr3L:2520139-2520259 84 5.90e-06 CTGCCaaaaa aaaaaaaa aaaaaaaaaa chr2L:763944-764064 39 5.90e-06 CCTCTGCaaa aaaaaaaa ggaaaagaaa chr3L:11549593-11549713 54 5.90e-06 aaaaaaaaaa aaaaaaaa ggaaaagagg chrX:15431232-15431352 4 5.90e-06 CAC AAAAAAAA Aaaggaagga chr3R:12174817-12174937 39 5.90e-06 aaaaaaaaaa aaaaaaaa aagagacaaa chr2R:10609922-10610042 78 5.90e-06 ggaaaaaagg aaaaaaaa gaaaaacgaa chrX:16648929-16649049 43 5.90e-06 GCTAAAATAA AAAAAAAA GGATAAAACG chr3R:29046576-29046696 45 5.90e-06 CCAAGCTCCC aaaaaaaa aaaccaaaaa chr2L:19101235-19101355 44 5.90e-06 AAGTTCTaaa aaaaaaaa aaggaaagag chrX:14145592-14145712 87 1.18e-05 ttttttGCTC AATAAAAA AGCGGCTCGT chr2R:10690658-10690778 7 1.18e-05 TAGGGC AATAAAAA TTCCGGCATT chr2L:2040079-2040199 86 1.92e-05 GTGAGCAAAC AAAAGAAA GTGAAACATT chrX:8323764-8323884 30 1.92e-05 aaatgaaaag aaaagaaa ggaaaagaaa chr3L:7412780-7412900 46 3.39e-05 CACAAATGTC AAAGAAAA TACGGGTTgg chr2L:10011115-10011235 75 3.39e-05 GAAAAAGGAG AAGAAAAA GCGCAAGATC chr3R:23539925-23540045 78 3.98e-05 AAAGCGTTGC ATAAAAAA TGGTTATGGC chrX:14719418-14719538 38 4.72e-05 gcaataatgc acaaaaaa tgcaataacg chrX:8179120-8179240 3 4.72e-05 AT ACAAAAAA TTGCTCATAT chr2L:1306236-1306356 23 5.31e-05 GTAAAGAGCA AAATAAAA TTCATTGCGC chr3R:2413581-2413701 12 6.06e-05 aaatcgtgtg caaaaaaa tcgtatggcg chr3L:19462896-19463016 4 6.80e-05 AAC AACAAAAA GTTTAATTGA chr3R:18129547-18129667 109 8.28e-05 TTTATGGAAC AATAGAAA CGCT chrX:12251000-12251120 107 8.28e-05 AACTGTCGCC AAAAACAA TTTCGT chrX:13944299-13944419 101 9.61e-05 TGAAATGCTC ATTAAAAA TGTAGAAAGC chr2R:11111166-11111286 70 1.04e-04 GTTAATGGCC AAAACAAA TGAACATGGC chrX:13573959-13574079 83 1.29e-04 gggaaaggga aaaggaaa aggaattggc chr2L:627002-627122 9 1.29e-04 agaagagg aaaggaaa gcagaggaaa chr3L:10924619-10924739 62 1.29e-04 GGGGACCAGA ACTAAAAA GAGTTGAGAG chr3R:10216014-10216134 8 1.52e-04 TATGGCT AAGGAAAA TCGCTTTAAC chr3L:8759946-8760066 49 1.52e-04 ggagaaggag aaggaaaa ggagcaggag chr2R:22967109-22967229 13 1.83e-04 AGTCGTGGCA ACAAGAAA TGCGGTTACA chrX:2819026-2819146 9 1.83e-04 TGATGTGT CATAAAAA CTATTTTCCA chrX:1538777-1538897 102 1.83e-04 CTTGTGCGTT ATGAAAAA CTAATTTCTC chrX:10295342-10295462 46 1.91e-04 TCTGGAAATG AAATGAAA TTGTGCTCAT chr2L:9864032-9864152 38 2.17e-04 ACGAACAACA AAGTAAAA TTCGCTCTGG chr2R:22576094-22576214 44 2.48e-04 GAGGTTGGCG AATAACAA AGGCGGTTTG chr2L:1619674-1619794 97 2.67e-04 GCTGGAAATG CAAGAAAA GCGAAAACAT chr2L:3925025-3925145 72 3.08e-04 CAGTGGCATA ATCAAAAA GGACAAGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17937777-17937897 5.9e-06 36_[+4]_76 chrX:11003559-11003679 5.9e-06 60_[+4]_52 chr2R:4552748-4552868 5.9e-06 58_[+4]_54 chr3R:6877370-6877490 5.9e-06 45_[+4]_67 chrX:20748978-20749098 5.9e-06 18_[+4]_94 chr3L:7824948-7825068 5.9e-06 65_[+4]_47 chrX:9940715-9940835 5.9e-06 64_[+4]_48 chrX:6894360-6894480 5.9e-06 49_[+4]_63 chrX:6515434-6515554 5.9e-06 62_[+4]_50 chr3L:2520139-2520259 5.9e-06 83_[+4]_29 chr2L:763944-764064 5.9e-06 38_[+4]_74 chr3L:11549593-11549713 5.9e-06 53_[+4]_59 chrX:15431232-15431352 5.9e-06 3_[+4]_109 chr3R:12174817-12174937 5.9e-06 38_[+4]_74 chr2R:10609922-10610042 5.9e-06 77_[+4]_35 chrX:16648929-16649049 5.9e-06 42_[+4]_70 chr3R:29046576-29046696 5.9e-06 44_[+4]_68 chr2L:19101235-19101355 5.9e-06 43_[+4]_69 chrX:14145592-14145712 1.2e-05 86_[+4]_26 chr2R:10690658-10690778 1.2e-05 6_[+4]_106 chr2L:2040079-2040199 1.9e-05 85_[+4]_27 chrX:8323764-8323884 1.9e-05 29_[+4]_83 chr3L:7412780-7412900 3.4e-05 45_[+4]_67 chr2L:10011115-10011235 3.4e-05 74_[+4]_38 chr3R:23539925-23540045 4e-05 77_[+4]_35 chrX:14719418-14719538 4.7e-05 37_[+4]_75 chrX:8179120-8179240 4.7e-05 2_[+4]_110 chr2L:1306236-1306356 5.3e-05 22_[+4]_90 chr3R:2413581-2413701 6.1e-05 11_[+4]_101 chr3L:19462896-19463016 6.8e-05 3_[+4]_109 chr3R:18129547-18129667 8.3e-05 108_[+4]_4 chrX:12251000-12251120 8.3e-05 106_[+4]_6 chrX:13944299-13944419 9.6e-05 100_[+4]_12 chr2R:11111166-11111286 0.0001 69_[+4]_43 chrX:13573959-13574079 0.00013 82_[+4]_30 chr2L:627002-627122 0.00013 8_[+4]_104 chr3L:10924619-10924739 0.00013 61_[+4]_51 chr3R:10216014-10216134 0.00015 7_[+4]_105 chr3L:8759946-8760066 0.00015 48_[+4]_64 chr2R:22967109-22967229 0.00018 12_[+4]_100 chrX:2819026-2819146 0.00018 8_[+4]_104 chrX:1538777-1538897 0.00018 101_[+4]_11 chrX:10295342-10295462 0.00019 45_[+4]_67 chr2L:9864032-9864152 0.00022 37_[+4]_75 chr2R:22576094-22576214 0.00025 43_[+4]_69 chr2L:1619674-1619794 0.00027 96_[+4]_16 chr2L:3925025-3925145 0.00031 71_[+4]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAA width=8 seqs=47 chrX:17937777-17937897 ( 37) AAAAAAAA 1 chrX:11003559-11003679 ( 61) AAAAAAAA 1 chr2R:4552748-4552868 ( 59) AAAAAAAA 1 chr3R:6877370-6877490 ( 46) AAAAAAAA 1 chrX:20748978-20749098 ( 19) AAAAAAAA 1 chr3L:7824948-7825068 ( 66) AAAAAAAA 1 chrX:9940715-9940835 ( 65) AAAAAAAA 1 chrX:6894360-6894480 ( 50) AAAAAAAA 1 chrX:6515434-6515554 ( 63) AAAAAAAA 1 chr3L:2520139-2520259 ( 84) AAAAAAAA 1 chr2L:763944-764064 ( 39) AAAAAAAA 1 chr3L:11549593-11549713 ( 54) AAAAAAAA 1 chrX:15431232-15431352 ( 4) AAAAAAAA 1 chr3R:12174817-12174937 ( 39) AAAAAAAA 1 chr2R:10609922-10610042 ( 78) AAAAAAAA 1 chrX:16648929-16649049 ( 43) AAAAAAAA 1 chr3R:29046576-29046696 ( 45) AAAAAAAA 1 chr2L:19101235-19101355 ( 44) AAAAAAAA 1 chrX:14145592-14145712 ( 87) AATAAAAA 1 chr2R:10690658-10690778 ( 7) AATAAAAA 1 chr2L:2040079-2040199 ( 86) AAAAGAAA 1 chrX:8323764-8323884 ( 30) AAAAGAAA 1 chr3L:7412780-7412900 ( 46) AAAGAAAA 1 chr2L:10011115-10011235 ( 75) AAGAAAAA 1 chr3R:23539925-23540045 ( 78) ATAAAAAA 1 chrX:14719418-14719538 ( 38) ACAAAAAA 1 chrX:8179120-8179240 ( 3) ACAAAAAA 1 chr2L:1306236-1306356 ( 23) AAATAAAA 1 chr3R:2413581-2413701 ( 12) CAAAAAAA 1 chr3L:19462896-19463016 ( 4) AACAAAAA 1 chr3R:18129547-18129667 ( 109) AATAGAAA 1 chrX:12251000-12251120 ( 107) AAAAACAA 1 chrX:13944299-13944419 ( 101) ATTAAAAA 1 chr2R:11111166-11111286 ( 70) AAAACAAA 1 chrX:13573959-13574079 ( 83) AAAGGAAA 1 chr2L:627002-627122 ( 9) AAAGGAAA 1 chr3L:10924619-10924739 ( 62) ACTAAAAA 1 chr3R:10216014-10216134 ( 8) AAGGAAAA 1 chr3L:8759946-8760066 ( 49) AAGGAAAA 1 chr2R:22967109-22967229 ( 13) ACAAGAAA 1 chrX:2819026-2819146 ( 9) CATAAAAA 1 chrX:1538777-1538897 ( 102) ATGAAAAA 1 chrX:10295342-10295462 ( 46) AAATGAAA 1 chr2L:9864032-9864152 ( 38) AAGTAAAA 1 chr2R:22576094-22576214 ( 44) AATAACAA 1 chr2L:1619674-1619794 ( 97) CAAGAAAA 1 chr2L:3925025-3925145 ( 72) ATCAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8033 E= 2.8e-016 208 -213 -1220 -1220 190 -171 -1220 -138 166 -271 -138 -57 187 -1220 -112 -179 190 -371 -90 -1220 211 -271 -1220 -1220 217 -1220 -1220 -1220 217 -1220 -1220 -1220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 2.8e-016 0.936170 0.063830 0.000000 0.000000 0.829787 0.085106 0.000000 0.085106 0.702128 0.042553 0.106383 0.148936 0.808511 0.000000 0.127660 0.063830 0.829787 0.021277 0.148936 0.000000 0.957447 0.042553 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-4 regular expression -------------------------------------------------------------------------------- AAAAAAAA -------------------------------------------------------------------------------- Time 26.76 secs. ******************************************************************************** ******************************************************************************** MOTIF CAMACAMA MEME-5 width = 8 sites = 40 llr = 351 E-value = 3.0e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAMACAMA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1a493a4a pos.-specific C 9:6:7:6: probability G :::1:::: matrix T :::::::: bits 2.2 * * * 2.0 * * * 1.7 * * * * 1.5 * * * * Relative 1.3 ** * * * Entropy 1.1 ******** (12.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus A A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMACAMA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5324981-5325101 25 1.49e-05 ATTTTGTGCC CACACACA GACACATGGA chr2L:12970053-12970173 59 1.49e-05 TAAGTGCCAC CACACACA TACGCTTGGG chr2R:14558255-14558375 78 1.49e-05 CCCCGATGGT CACACACA AAGCCAGCGA chrX:14102234-14102354 49 1.49e-05 cacacacaca cacacaca cacCCCCCCC chr2R:19599417-19599537 77 1.49e-05 TCcacacgca cacacaca cacacacGCG chrX:4313369-4313489 40 1.49e-05 TTAATTGTGC CACACACA cccccccccc chr3R:29325195-29325315 14 1.49e-05 AGcacacaca cacacaca ctccactcac chrX:6717731-6717851 83 1.49e-05 cacacacaca cacacaca cacacacaAG chrX:16648929-16649049 78 1.49e-05 CGCGcacaca cacacaca cacgcaTGTG chrX:12700907-12701027 45 1.49e-05 GCCTGAGACA CACACACA GACACAAAAG chr2R:6893758-6893878 50 1.49e-05 cgcacacaca cacacaca cacGGCAGCT chr2L:14154248-14154368 46 1.49e-05 CAGGAAAacg cacacaca cgcacacacg chrX:6671326-6671446 55 1.49e-05 ACTGGGTACA CACACACA TATTGAGGGG chrX:9668101-9668221 83 1.49e-05 cacgcactca cacacaca cATGGGGCGG chrX:10316322-10316442 36 2.68e-05 TGCCTGTAAA CAAACACA CTTCTTGGCC chr2L:10960378-10960498 23 2.68e-05 CCGAAAGCCA CAAACACA ACAGAGTTTG chr2R:20876916-20877036 23 2.68e-05 AAGCAACAGC CAAACACA AATTCTCGAG chr2R:14690663-14690783 21 3.86e-05 CTCCGAATGA CACACAAA TTGATGAGCA chr2L:9864032-9864152 103 3.86e-05 GGACCCTTCG CACACAAA CCAGGAAAAT chr3L:8257596-8257716 30 4.80e-05 TGCATTTCAT CAAACAAA GCACACGGTT chr3R:6877370-6877490 68 4.80e-05 aCAGAGAGCC CAAACAAA TGACGGTCGA chr3R:22103946-22104066 11 5.98e-05 TAATGTGGGA CACAAACA GAAGCGGCGT chrX:2819026-2819146 48 6.92e-05 TTACACGAGA CAAAAACA GAGTCAAAGT chr3L:1995964-1996084 50 7.86e-05 TAATGACACG CACAAAAA GGCTGAAGGG chr3L:11549593-11549713 6 7.86e-05 GCCAG CACAAAAA AAAGGACTAG chr3R:6116988-6117108 108 7.86e-05 CTCAATCAAT CACAAAAA GCGAT chrX:11003559-11003679 72 8.60e-05 aaaaaaaaaa caaaaaaa aaggaaaaaa chr2R:4552748-4552868 51 8.60e-05 agaaaaagaa caaaaaaa aaaaaaaaag chrX:6515434-6515554 54 8.60e-05 TCTGCCAACC Caaaaaaa aaaaaaaaaa chr3R:12174817-12174937 21 8.60e-05 TGGAAAGGAG Caaaaaaa aaaaaaaaaa chr3R:29046576-29046696 57 8.60e-05 aaaaaaaaac caaaaaaa aaaggaaaga chrX:14719418-14719538 112 8.60e-05 atgttattta caaaaaaa g chr3R:9270924-9271044 28 9.79e-05 AAGCAAATTT AACACACA CTCCCttttt chr3L:20260741-20260861 28 9.79e-05 GTTTTTTGGA AACACACA ACAAcccccc chr3R:13503506-13503626 94 1.07e-04 TACACAGCGG AAAACACA CGGCGGCTCA chr2R:13490695-13490815 92 1.07e-04 TTAATGACGG AAAACACA TAAGTTAGGG chrX:9940715-9940835 54 1.54e-04 CCGGGCaaag aaaaaaaa aaaaaaaaaa chr3L:7412780-7412900 32 1.73e-04 GTGCATATGG CACGCACA AATGTCAAAG chrX:20748978-20749098 10 2.14e-04 GGAAAATGG CAAGCaaa aaaaaaaaaa chr2R:8430923-8431043 88 2.29e-04 AATCCATCGG CACGAACA TCATCGGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMACAMA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5324981-5325101 1.5e-05 24_[+5]_88 chr2L:12970053-12970173 1.5e-05 58_[+5]_54 chr2R:14558255-14558375 1.5e-05 77_[+5]_35 chrX:14102234-14102354 1.5e-05 48_[+5]_64 chr2R:19599417-19599537 1.5e-05 76_[+5]_36 chrX:4313369-4313489 1.5e-05 39_[+5]_73 chr3R:29325195-29325315 1.5e-05 13_[+5]_99 chrX:6717731-6717851 1.5e-05 82_[+5]_30 chrX:16648929-16649049 1.5e-05 77_[+5]_35 chrX:12700907-12701027 1.5e-05 44_[+5]_68 chr2R:6893758-6893878 1.5e-05 49_[+5]_63 chr2L:14154248-14154368 1.5e-05 45_[+5]_67 chrX:6671326-6671446 1.5e-05 54_[+5]_58 chrX:9668101-9668221 1.5e-05 82_[+5]_30 chrX:10316322-10316442 2.7e-05 35_[+5]_77 chr2L:10960378-10960498 2.7e-05 22_[+5]_90 chr2R:20876916-20877036 2.7e-05 22_[+5]_90 chr2R:14690663-14690783 3.9e-05 20_[+5]_92 chr2L:9864032-9864152 3.9e-05 102_[+5]_10 chr3L:8257596-8257716 4.8e-05 29_[+5]_83 chr3R:6877370-6877490 4.8e-05 67_[+5]_45 chr3R:22103946-22104066 6e-05 10_[+5]_102 chrX:2819026-2819146 6.9e-05 47_[+5]_65 chr3L:1995964-1996084 7.9e-05 49_[+5]_63 chr3L:11549593-11549713 7.9e-05 5_[+5]_107 chr3R:6116988-6117108 7.9e-05 107_[+5]_5 chrX:11003559-11003679 8.6e-05 71_[+5]_41 chr2R:4552748-4552868 8.6e-05 50_[+5]_62 chrX:6515434-6515554 8.6e-05 53_[+5]_59 chr3R:12174817-12174937 8.6e-05 20_[+5]_92 chr3R:29046576-29046696 8.6e-05 56_[+5]_56 chrX:14719418-14719538 8.6e-05 111_[+5]_1 chr3R:9270924-9271044 9.8e-05 27_[+5]_85 chr3L:20260741-20260861 9.8e-05 27_[+5]_85 chr3R:13503506-13503626 0.00011 93_[+5]_19 chr2R:13490695-13490815 0.00011 91_[+5]_21 chrX:9940715-9940835 0.00015 53_[+5]_59 chr3L:7412780-7412900 0.00017 31_[+5]_81 chrX:20748978-20749098 0.00021 9_[+5]_103 chr2R:8430923-8431043 0.00023 87_[+5]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMACAMA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAMACAMA width=8 seqs=40 chr3L:5324981-5325101 ( 25) CACACACA 1 chr2L:12970053-12970173 ( 59) CACACACA 1 chr2R:14558255-14558375 ( 78) CACACACA 1 chrX:14102234-14102354 ( 49) CACACACA 1 chr2R:19599417-19599537 ( 77) CACACACA 1 chrX:4313369-4313489 ( 40) CACACACA 1 chr3R:29325195-29325315 ( 14) CACACACA 1 chrX:6717731-6717851 ( 83) CACACACA 1 chrX:16648929-16649049 ( 78) CACACACA 1 chrX:12700907-12701027 ( 45) CACACACA 1 chr2R:6893758-6893878 ( 50) CACACACA 1 chr2L:14154248-14154368 ( 46) CACACACA 1 chrX:6671326-6671446 ( 55) CACACACA 1 chrX:9668101-9668221 ( 83) CACACACA 1 chrX:10316322-10316442 ( 36) CAAACACA 1 chr2L:10960378-10960498 ( 23) CAAACACA 1 chr2R:20876916-20877036 ( 23) CAAACACA 1 chr2R:14690663-14690783 ( 21) CACACAAA 1 chr2L:9864032-9864152 ( 103) CACACAAA 1 chr3L:8257596-8257716 ( 30) CAAACAAA 1 chr3R:6877370-6877490 ( 68) CAAACAAA 1 chr3R:22103946-22104066 ( 11) CACAAACA 1 chrX:2819026-2819146 ( 48) CAAAAACA 1 chr3L:1995964-1996084 ( 50) CACAAAAA 1 chr3L:11549593-11549713 ( 6) CACAAAAA 1 chr3R:6116988-6117108 ( 108) CACAAAAA 1 chrX:11003559-11003679 ( 72) CAAAAAAA 1 chr2R:4552748-4552868 ( 51) CAAAAAAA 1 chrX:6515434-6515554 ( 54) CAAAAAAA 1 chr3R:12174817-12174937 ( 21) CAAAAAAA 1 chr3R:29046576-29046696 ( 57) CAAAAAAA 1 chrX:14719418-14719538 ( 112) CAAAAAAA 1 chr3R:9270924-9271044 ( 28) AACACACA 1 chr3L:20260741-20260861 ( 28) AACACACA 1 chr3R:13503506-13503626 ( 94) AAAACACA 1 chr2R:13490695-13490815 ( 92) AAAACACA 1 chrX:9940715-9940835 ( 54) AAAAAAAA 1 chr3L:7412780-7412900 ( 32) CACGCACA 1 chrX:20748978-20749098 ( 10) CAAGCAAA 1 chr2R:8430923-8431043 ( 88) CACGAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMACAMA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4064 E= 3.0e-006 -83 165 -1197 -1197 217 -1197 -1197 -1197 85 110 -1197 -1197 206 -1197 -188 -1197 55 127 -1197 -1197 217 -1197 -1197 -1197 76 116 -1197 -1197 217 -1197 -1197 -1197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMACAMA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 3.0e-006 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.925000 0.000000 0.075000 0.000000 0.325000 0.675000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.375000 0.625000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMACAMA MEME-5 regular expression -------------------------------------------------------------------------------- CA[CA]A[CA]A[CA]A -------------------------------------------------------------------------------- Time 32.78 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8103230-8103350 5.33e-01 120 chrX:8829545-8829665 5.01e-01 120 chrX:5606463-5606583 5.24e-01 120 chrX:15259434-15259554 2.05e-01 101_[+1(3.99e-05)]_11 chr3R:18515191-18515311 4.20e-02 120 chrX:597203-597323 4.16e-01 120 chrX:1643779-1643899 2.24e-01 120 chrX:5511306-5511426 7.40e-01 120 chrX:4897031-4897151 1.25e-01 120 chrX:8179120-8179240 3.52e-04 2_[+4(4.72e-05)]_9_[+1(5.90e-06)]_\ 93 chrX:20942197-20942317 4.07e-01 120 chrX:1538777-1538897 8.09e-02 120 chr3L:19653689-19653809 5.61e-01 120 chrX:9668101-9668221 8.40e-03 80_[+5(1.49e-05)]_32 chrX:14719418-14719538 1.02e-03 37_[+4(4.72e-05)]_65_[+4(4.72e-05)]_\ 2 chr2L:11737127-11737247 7.51e-01 120 chrX:6671326-6671446 8.20e-03 52_[+5(1.49e-05)]_60 chr2L:14154248-14154368 1.63e-02 45_[+5(1.49e-05)]_67 chr2R:6893758-6893878 2.53e-03 25_[+5(9.79e-05)]_8_[+5(1.49e-05)]_\ [+5(1.49e-05)]_39_[+1(2.51e-05)]_16 chrX:9716987-9717107 1.42e-01 74_[+1(3.99e-05)]_3_[+1(5.90e-06)]_\ 27 chr3R:22831177-22831297 4.15e-02 54_[+3(3.78e-05)]_[+3(3.78e-05)]_50 chr3R:6116988-6117108 2.14e-03 81_[+1(7.55e-05)]_18_[+5(7.86e-05)]_\ 5 chr2L:19101235-19101355 1.90e-03 4_[+4(1.92e-05)]_28_[+4(5.90e-06)]_\ 72 chr3R:29046576-29046696 2.39e-04 44_[+4(5.90e-06)]_5_[+4(5.90e-06)]_\ 8_[+4(1.92e-05)]_39 chr2R:7598445-7598565 3.29e-02 55_[+3(3.78e-05)]_[+3(3.78e-05)]_49 chrX:12700907-12701027 3.63e-03 42_[+5(1.49e-05)]_35_[+2(3.47e-05)]_\ 27 chr3L:7258448-7258568 8.20e-03 31_[+1(1.92e-05)]_19_[+3(3.78e-05)]_\ 54 chrX:16648929-16649049 6.32e-04 40_[+4(5.90e-06)]_23_[+5(1.49e-05)]_\ [+5(1.49e-05)]_33 chrX:16523530-16523650 4.48e-01 120 chr3R:23539925-23540045 2.12e-02 77_[+4(3.98e-05)]_35 chrX:9357003-9357123 1.96e-01 120 chr3L:4472114-4472234 5.40e-01 120 chr2R:10690658-10690778 7.76e-04 6_[+4(1.18e-05)]_61_[+3(3.78e-05)]_\ [+3(3.78e-05)]_29 chr3R:20927172-20927292 4.56e-01 120 chr2R:23863736-23863856 7.34e-01 120 chr2R:10609922-10610042 1.00e-03 77_[+4(5.90e-06)]_35 chr3R:14430031-14430151 7.44e-03 27_[+3(3.78e-05)]_[+3(3.78e-05)]_77 chr3L:2688672-2688792 2.37e-01 54_[+1(1.92e-05)]_[+1(3.99e-05)]_6_\ [+1(1.92e-05)]_36 chrX:19025758-19025878 1.59e-01 120 chr3L:10924619-10924739 3.06e-03 44_[+2(3.47e-05)]_68 chrX:18481429-18481549 2.89e-01 120 chrX:12050467-12050587 6.47e-02 6_[+1(1.92e-05)]_106 chr3R:12174817-12174937 7.09e-03 21_[+4(5.90e-06)]_[+4(5.90e-06)]_\ [+4(5.90e-06)]_75 chrX:15431232-15431352 1.71e-03 3_[+4(5.90e-06)]_109 chrX:6717731-6717851 1.01e-03 47_[+1(1.92e-05)]_17_[+5(1.49e-05)]_\ [+5(1.49e-05)]_[+5(1.49e-05)]_24 chr3R:29325195-29325315 1.10e-03 5_[+5(1.49e-05)]_[+5(1.49e-05)]_24_\ [+2(6.24e-05)]_67 chr3L:11549593-11549713 5.04e-03 8_[+4(5.90e-06)]_24_[+4(5.90e-06)]_\ [+4(5.90e-06)]_64 chrX:9847672-9847792 1.92e-02 57_[+2(6.24e-05)]_55 chr3R:30031975-30032095 1.67e-01 120 chr2L:7744333-7744453 9.72e-01 120 chr2L:12908136-12908256 2.08e-01 120 chrX:14145592-14145712 5.25e-04 64_[+1(5.90e-06)]_[+1(5.90e-06)]_6_\ [+4(1.18e-05)]_26 chr3R:4682757-4682877 8.74e-02 53_[+3(3.78e-05)]_[+3(3.78e-05)]_51 chr2L:3925025-3925145 7.97e-03 32_[+1(5.90e-06)]_80 chr2L:763944-764064 7.00e-03 35_[+4(5.90e-06)]_5_[+4(1.92e-05)]_\ 64 chr2L:18543485-18543605 6.20e-01 120 chr2L:1619674-1619794 3.27e-03 6_[+1(1.92e-05)]_2_[+1(5.47e-05)]_\ 96 chr3L:2520139-2520259 4.47e-03 78_[+4(5.90e-06)]_[+4(5.90e-06)]_\ [+4(5.90e-06)]_[+4(5.90e-06)]_10 chrX:6515434-6515554 1.02e-04 54_[+4(5.90e-06)]_[+4(5.90e-06)]_7_\ [+4(5.90e-06)]_35 chr2R:11028258-11028378 5.22e-02 51_[+3(3.78e-05)]_61 chr3L:1252790-1252910 9.85e-01 120 chr2L:10011115-10011235 1.89e-02 74_[+4(3.39e-05)]_38 chr2R:15548633-15548753 5.90e-02 42_[+2(3.47e-05)]_70 chrX:6894360-6894480 1.14e-05 48_[+4(5.90e-06)]_9_[+1(5.90e-06)]_\ 47 chr3L:19462896-19463016 3.54e-02 3_[+4(6.80e-05)]_109 chr3R:28594541-28594661 8.67e-01 120 chrX:4313369-4313489 7.42e-04 39_[+5(1.49e-05)]_[+3(3.78e-05)]_\ [+3(3.78e-05)]_57 chrX:19539807-19539927 8.27e-02 75_[+3(9.77e-05)]_37 chr3R:16885752-16885872 2.58e-02 49_[+3(3.78e-05)]_63 chr3L:11025194-11025314 9.17e-03 1_[+2(3.47e-05)]_111 chr2L:1306236-1306356 3.48e-03 22_[+4(5.31e-05)]_26_[+2(3.47e-05)]_\ 56 chr2R:24009118-24009238 5.80e-01 120 chr2R:14798462-14798582 9.25e-01 120 chr3R:26781102-26781222 1.48e-03 45_[+3(3.78e-05)]_1_[+3(9.77e-05)]_\ 58 chr2L:806340-806460 1.28e-01 120 chr2R:20950740-20950860 1.67e-02 12_[+2(3.47e-05)]_[+2(3.47e-05)]_92 chrX:11720772-11720892 5.29e-01 57_[+2(9.75e-05)]_55 chr3L:1995964-1996084 6.10e-04 49_[+5(7.86e-05)]_33_[+1(5.90e-06)]_\ 22 chr2R:13490695-13490815 3.14e-03 6_[+2(3.47e-05)]_[+2(3.47e-05)]_98 chr2R:11154986-11155106 1.38e-01 120 chr3R:13329534-13329654 1.75e-01 120 chrX:18732190-18732310 1.04e-01 71_[+2(3.47e-05)]_[+2(3.47e-05)]_33 chr2L:14835381-14835501 1.16e-02 41_[+3(3.78e-05)]_39_[+1(4.73e-05)]_\ 24 chr3R:6891170-6891290 2.42e-01 [+2(3.47e-05)]_[+2(3.47e-05)]_104 chr2R:10924190-10924310 9.05e-03 68_[+2(3.47e-05)]_[+2(3.47e-05)]_36 chr3R:13390151-13390271 3.21e-01 120 chr2L:10684016-10684136 4.50e-01 120 chr3L:22308754-22308874 1.32e-01 49_[+3(3.78e-05)]_[+3(3.78e-05)]_55 chr3R:6968195-6968315 8.07e-02 52_[+2(3.47e-05)]_60 chr2L:627002-627122 4.19e-01 120 chr3L:8759946-8760066 2.63e-01 120 chr2R:870423-870543 9.99e-01 120 chr2R:23298222-23298342 3.43e-01 120 chr2L:3874538-3874658 2.18e-01 120 chrX:13944299-13944419 2.91e-03 43_[+2(3.47e-05)]_49_[+4(9.61e-05)]_\ 12 chr2R:20876916-20877036 2.38e-02 22_[+5(2.68e-05)]_90 chr2R:10334936-10335056 1.65e-02 120 chrX:9940715-9940835 4.99e-04 53_[+4(5.90e-06)]_[+4(5.90e-06)]_51 chr3L:598488-598608 9.97e-01 120 chrX:16865683-16865803 9.72e-02 32_[+2(3.47e-05)]_[+2(3.47e-05)]_72 chr2R:6067603-6067723 1.90e-01 120 chr3L:7824948-7825068 5.23e-03 48_[+4(5.31e-05)]_8_[+4(5.90e-06)]_\ 48 chr2L:3448573-3448693 9.60e-02 37_[+2(3.47e-05)]_[+2(3.47e-05)]_67 chr2R:8387999-8388119 2.06e-01 120 chrX:12044944-12045064 2.78e-01 120 chr3R:30929573-30929693 4.75e-01 84_[+3(9.77e-05)]_28 chr2L:5783018-5783138 1.23e-01 48_[+3(3.78e-05)]_64 chr2L:15238112-15238232 1.70e-01 120 chr2R:19599417-19599537 7.33e-02 74_[+5(1.49e-05)]_[+5(1.49e-05)]_30 chrX:8323764-8323884 3.28e-02 9_[+4(1.92e-05)]_7_[+4(1.92e-05)]_7_\ [+4(1.92e-05)]_73 chr3L:20260741-20260861 1.96e-04 16_[+1(4.73e-05)]_3_[+5(9.79e-05)]_\ 4_[+3(3.78e-05)]_[+3(3.78e-05)]_65 chrX:14102234-14102354 4.37e-04 32_[+5(1.49e-05)]_[+5(1.49e-05)]_\ [+5(1.49e-05)]_2_[+3(3.78e-05)]_54 chr2L:9864032-9864152 5.85e-04 73_[+3(3.78e-05)]_[+3(3.78e-05)]_13_\ [+5(3.86e-05)]_10 chr2L:735866-735986 9.56e-01 120 chr2R:11111166-11111286 2.56e-04 37_[+3(3.78e-05)]_[+3(3.78e-05)]_67 chrX:20748978-20749098 4.18e-04 14_[+4(5.90e-06)]_[+4(5.90e-06)]_90 chrX:17807442-17807562 1.14e-01 30_[+2(3.47e-05)]_82 chr2R:13045524-13045644 1.37e-01 [+2(3.47e-05)]_112 chrX:13580318-13580438 9.53e-02 120 chrX:16510817-16510937 4.95e-01 120 chr3L:12162436-12162556 2.96e-01 35_[+2(6.24e-05)]_77 chr3R:6877370-6877490 4.94e-03 24_[+4(4.72e-05)]_5_[+4(5.90e-06)]_\ [+4(5.90e-06)]_14_[+5(4.80e-05)]_45 chr2R:8389341-8389461 8.97e-02 120 chr3L:19887712-19887832 2.40e-01 120 chrX:15215806-15215926 5.88e-01 120 chr3R:17632924-17633044 3.06e-02 16_[+2(3.47e-05)]_[+2(3.47e-05)]_88 chr2R:20867376-20867496 3.73e-03 33_[+2(6.24e-05)]_79 chr3R:6952184-6952304 3.76e-02 73_[+3(3.78e-05)]_2_[+3(9.77e-05)]_\ 29 chr3R:22103946-22104066 6.14e-03 10_[+5(5.98e-05)]_35_[+3(3.78e-05)]_\ 59 chr2R:14558255-14558375 3.74e-02 77_[+5(1.49e-05)]_35 chr3L:3135338-3135458 7.87e-02 50_[+3(3.78e-05)]_[+3(3.78e-05)]_54 chr2L:14940174-14940294 1.19e-03 28_[+3(3.78e-05)]_34_[+1(5.90e-06)]_\ 2_[+1(2.51e-05)]_32 chr3L:12708220-12708340 2.43e-01 120 chr2R:7470619-7470739 2.85e-02 55_[+2(3.47e-05)]_[+2(3.47e-05)]_49 chr3L:11160433-11160553 6.34e-01 120 chr2L:7923340-7923460 2.03e-02 103_[+3(3.78e-05)]_9 chr2L:12970053-12970173 4.96e-03 22_[+2(3.47e-05)]_[+2(3.47e-05)]_20_\ [+5(1.49e-05)]_54 chr2R:22001758-22001878 3.65e-01 120 chrX:10184076-10184196 6.14e-02 32_[+2(3.47e-05)]_80 chr3L:4143247-4143367 5.72e-01 120 chr3R:22660556-22660676 3.04e-02 1_[+1(5.90e-06)]_111 chrX:13315788-13315908 2.31e-02 35_[+1(1.92e-05)]_5_[+1(5.90e-06)]_\ 64 chr2R:13765229-13765349 2.91e-04 56_[+2(6.24e-05)]_38_[+1(6.22e-05)]_\ 10 chr3L:18628669-18628789 1.18e-03 5_[+3(3.78e-05)]_72_[+1(2.51e-05)]_\ 27 chr2R:17312910-17313030 4.79e-02 56_[+3(3.78e-05)]_[+3(3.78e-05)]_48 chrX:18770724-18770844 9.41e-02 27_[+1(8.30e-05)]_85 chrX:13573959-13574079 3.60e-01 120 chr3L:21631001-21631121 3.90e-01 120 chr3R:8587979-8588099 2.63e-02 11_[+1(5.47e-05)]_15_[+1(5.90e-06)]_\ 78 chr2L:12849824-12849944 2.65e-02 20_[+3(3.78e-05)]_[+3(3.78e-05)]_84 chr2R:22065993-22066113 3.05e-02 66_[+3(3.78e-05)]_46 chr2R:22733087-22733207 2.74e-01 120 chr2L:5332376-5332496 4.17e-01 120 chr3R:19236951-19237071 2.38e-01 120 chrX:2819026-2819146 8.69e-04 47_[+5(6.92e-05)]_57_[+3(9.77e-05)] chr2R:19330597-19330717 6.24e-01 120 chrX:14125393-14125513 2.67e-02 82_[+1(5.90e-06)]_2_[+1(3.99e-05)]_\ 20 chr3L:1931772-1931892 2.37e-02 44_[+2(3.47e-05)]_68 chr3L:17386059-17386179 2.26e-01 33_[+2(6.24e-05)]_79 chr3R:9322705-9322825 4.14e-03 41_[+1(3.99e-05)]_14_[+1(5.90e-06)]_\ 3_[+2(3.47e-05)]_38 chrX:16566068-16566188 4.19e-01 120 chr2R:23308068-23308188 2.75e-01 54_[+2(6.24e-05)]_58 chr2L:3219754-3219874 9.36e-02 16_[+1(5.90e-06)]_10_[+1(5.90e-06)]_\ 78 chr2R:6566178-6566298 1.45e-01 58_[+3(3.78e-05)]_1_[+3(9.77e-05)]_\ 45 chr2R:22576094-22576214 2.71e-03 [+2(3.47e-05)]_112 chrX:933321-933441 8.99e-02 36_[+2(3.47e-05)]_76 chr2R:6914654-6914774 3.62e-01 93_[+2(9.75e-05)]_19 chr3R:17792832-17792952 1.79e-02 47_[+3(3.78e-05)]_65 chrX:1977326-1977446 3.94e-01 120 chr3L:9884782-9884902 1.84e-01 25_[+1(3.99e-05)]_87 chrX:17009191-17009311 4.41e-03 68_[+2(3.47e-05)]_44 chr2R:22967109-22967229 7.92e-02 120 chr2L:9445035-9445155 9.66e-01 120 chr3R:5334552-5334672 9.95e-01 120 chr2L:7236199-7236319 3.65e-01 120 chr2R:18192033-18192153 4.92e-02 120 chr3R:29330370-29330490 2.68e-02 11_[+3(3.78e-05)]_101 chr3R:6278768-6278888 9.37e-01 120 chrX:9767810-9767930 1.21e-01 36_[+1(7.55e-05)]_4_[+1(5.90e-06)]_\ 20_[+1(5.90e-06)]_20_[+1(3.99e-05)]_8 chr2L:19702604-19702724 7.66e-03 23_[+2(3.47e-05)]_46_[+3(9.77e-05)]_\ 35 chr3L:5324981-5325101 7.86e-04 24_[+5(1.49e-05)]_30_[+3(3.78e-05)]_\ 50 chr2R:8430923-8431043 3.78e-01 120 chr2R:14690663-14690783 1.32e-03 20_[+5(3.86e-05)]_34_[+1(5.90e-06)]_\ 9_[+1(1.92e-05)]_33 chr3R:13244289-13244409 9.35e-01 120 chr3R:13659030-13659150 2.48e-01 120 chr3L:19917205-19917325 4.07e-01 120 chr3R:9270924-9271044 6.12e-03 27_[+5(9.79e-05)]_11_[+1(5.90e-06)]_\ 66 chrX:12251000-12251120 2.49e-04 26_[+2(3.47e-05)]_[+2(3.47e-05)]_63_\ [+5(6.92e-05)]_7 chr2L:5959957-5960077 8.59e-01 120 chr3R:12295034-12295154 6.96e-01 120 chr3R:17698453-17698573 8.88e-01 120 chr2R:8828397-8828517 2.45e-03 41_[+2(3.47e-05)]_1_[+2(9.75e-05)]_\ 62 chrX:15249985-15250105 2.10e-01 120 chr3L:8874454-8874574 6.08e-02 120 chr2R:20600255-20600375 4.67e-02 18_[+1(5.90e-06)]_[+1(5.90e-06)]_\ [+1(5.90e-06)]_[+1(5.90e-06)]_[+1(5.90e-06)]_[+1(5.90e-06)]_[+1(5.90e-06)]_\ 46 chr3R:25666161-25666281 2.21e-01 99_[+3(3.78e-05)]_13 chrX:2640964-2641084 5.45e-03 15_[+1(1.92e-05)]_23_[+2(3.47e-05)]_\ [+2(3.47e-05)]_58 chr3L:18492800-18492920 1.57e-01 50_[+3(3.78e-05)]_62 chr3R:16659905-16660025 6.87e-01 120 chr2R:12744404-12744524 3.30e-02 120 chr3R:13503506-13503626 7.68e-03 51_[+3(3.78e-05)]_[+3(3.78e-05)]_53 chr2R:4552748-4552868 3.65e-03 37_[+4(1.92e-05)]_6_[+4(5.90e-06)]_\ [+4(5.90e-06)]_3_[+4(1.92e-05)]_4_[+4(5.90e-06)]_30 chrX:11003559-11003679 2.43e-03 55_[+4(5.90e-06)]_[+4(5.90e-06)]_1_\ [+4(5.90e-06)]_40 chr2L:10960378-10960498 2.33e-03 22_[+5(2.68e-05)]_34_[+3(3.78e-05)]_\ 48 chr2L:1087748-1087868 1.65e-01 55_[+2(9.75e-05)]_57 chr3L:3971490-3971610 3.84e-01 120 chr3L:2658933-2659053 9.11e-01 120 chr2R:15361748-15361868 5.76e-02 71_[+2(3.47e-05)]_41 chr3L:20106148-20106268 7.59e-01 120 chr2R:5848411-5848531 1.12e-03 19_[+1(5.90e-06)]_4_[+3(3.78e-05)]_\ 81 chr3R:13545646-13545766 3.63e-01 120 chr3R:10674782-10674902 1.71e-01 25_[+2(3.47e-05)]_87 chr2R:24332992-24333112 5.03e-01 120 chr3R:24863246-24863366 9.16e-01 120 chr3L:7412780-7412900 4.49e-05 45_[+4(3.39e-05)]_8_[+2(3.47e-05)]_\ [+2(3.47e-05)]_43 chr3R:22277782-22277902 4.14e-01 120 chr3R:13545353-13545473 9.58e-01 120 chr3R:11436221-11436341 2.58e-01 120 chr2L:20441952-20442072 6.74e-01 120 chr3L:5800601-5800721 9.95e-01 120 chr2R:7209208-7209328 4.76e-01 120 chr2L:2040079-2040199 1.84e-05 19_[+2(9.75e-05)]_58_[+4(1.92e-05)]_\ 27 chr3L:17479734-17479854 6.52e-01 120 chr2L:10972910-10973030 5.25e-01 120 chr2L:9359104-9359224 6.58e-02 53_[+3(3.78e-05)]_59 chr2R:18872857-18872977 9.83e-02 120 chr2L:6208648-6208768 3.57e-01 120 chr3L:12340164-12340284 7.67e-01 120 chrX:10295342-10295462 6.05e-02 120 chrX:17937777-17937897 8.43e-04 33_[+4(5.90e-06)]_[+4(5.90e-06)]_71 chrX:12812920-12813040 4.60e-02 42_[+1(5.90e-06)]_[+1(5.90e-06)]_30_\ [+1(5.90e-06)]_24 chr2L:1199478-1199598 5.35e-01 120 chr3R:7448481-7448601 5.33e-01 120 chr2R:7894857-7894977 2.41e-01 120 chr3R:15951710-15951830 2.27e-01 120 chrX:10316322-10316442 4.22e-03 35_[+5(2.68e-05)]_77 chr3L:8257596-8257716 3.71e-04 29_[+5(4.80e-05)]_16_[+2(3.47e-05)]_\ 59 chr2R:16077575-16077695 2.32e-02 49_[+3(9.77e-05)]_63 chrX:12126965-12127085 6.43e-03 [+2(3.47e-05)]_[+2(3.47e-05)]_21_\ [+1(3.99e-05)]_75 chr3L:17226033-17226153 7.69e-01 120 chrX:21429036-21429156 7.98e-01 120 chr3R:10216014-10216134 1.10e-02 84_[+2(3.47e-05)]_28 chr3R:2413581-2413701 1.84e-03 11_[+4(6.06e-05)]_101 chrX:9286247-9286367 5.32e-01 120 chr2R:8201172-8201292 5.59e-02 11_[+3(3.78e-05)]_101 chr3R:18129547-18129667 7.41e-04 1_[+1(1.92e-05)]_[+1(3.99e-05)]_8_\ [+1(5.90e-06)]_[+1(5.90e-06)]_67_[+4(8.28e-05)]_4 chr2R:17660396-17660516 2.55e-01 42_[+2(3.47e-05)]_1_[+2(9.75e-05)]_\ 61 chr2L:3751852-3751972 9.32e-01 120 chr3R:28490126-28490246 3.63e-01 1_[+2(9.75e-05)]_111 chrX:11424118-11424238 3.28e-04 29_[+3(3.78e-05)]_83 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n02.farnam.hpc.yale.internal ********************************************************************************