******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hr38.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:13921203-13921323 1.0000 120 chr2R:8358045-8358165 1.0000 120 chr2R:7246657-7246777 1.0000 120 chr3R:21733127-21733247 1.0000 120 chr3R:24996683-24996803 1.0000 120 chr3L:5834387-5834507 1.0000 120 chr2L:1916568-1916688 1.0000 120 chr2R:23672701-23672821 1.0000 120 chr2R:7246861-7246981 1.0000 120 chr2R:23761430-23761550 1.0000 120 chr2L:2184294-2184414 1.0000 120 chr2R:1522466-1522586 1.0000 120 chr3L:5807465-5807585 1.0000 120 chr2L:2249555-2249675 1.0000 120 chr3L:6482966-6483086 1.0000 120 chr3L:813323-813443 1.0000 120 chr3R:29757333-29757453 1.0000 120 chr2L:18860835-18860955 1.0000 120 chr3R:6214337-6214457 1.0000 120 chr2L:18456235-18456355 1.0000 120 chr3R:14847291-14847411 1.0000 120 chr2R:23770171-23770291 1.0000 120 chr3R:14720287-14720407 1.0000 120 chr2L:14224146-14224266 1.0000 120 chr2R:18355938-18356058 1.0000 120 chr2R:7244289-7244409 1.0000 120 chr2L:11950055-11950175 1.0000 120 chr2L:1086469-1086589 1.0000 120 chr3R:13952467-13952587 1.0000 120 chr3L:19491475-19491595 1.0000 120 chr2L:2802691-2802811 1.0000 120 chr2L:7376319-7376439 1.0000 120 chr3R:31680922-31681042 1.0000 120 chr3R:13974861-13974981 1.0000 120 chr2R:18224964-18225084 1.0000 120 chr2L:2413293-2413413 1.0000 120 chr3L:8419156-8419276 1.0000 120 chr2R:9557555-9557675 1.0000 120 chr3R:29847198-29847318 1.0000 120 chr3R:30095981-30096101 1.0000 120 chr2R:23567372-23567492 1.0000 120 chr3L:6274981-6275101 1.0000 120 chr3L:13495172-13495292 1.0000 120 chr3R:30840866-30840986 1.0000 120 chr2R:12595784-12595904 1.0000 120 chr3R:31443628-31443748 1.0000 120 chr3L:19315048-19315168 1.0000 120 chr3L:1844746-1844866 1.0000 120 chr3L:787715-787835 1.0000 120 chr3R:14070213-14070333 1.0000 120 chr3L:10792689-10792809 1.0000 120 chr2L:7313579-7313699 1.0000 120 chrX:8491926-8492046 1.0000 120 chr2L:4347142-4347262 1.0000 120 chr3R:13716933-13717053 1.0000 120 chrX:11451117-11451237 1.0000 120 chr2L:18341043-18341163 1.0000 120 chr2L:3882365-3882485 1.0000 120 chr3L:11656345-11656465 1.0000 120 chrX:14953134-14953254 1.0000 120 chr3L:4304697-4304817 1.0000 120 chr2L:18707923-18708043 1.0000 120 chr3R:8106468-8106588 1.0000 120 chrX:9460757-9460877 1.0000 120 chrX:12226718-12226838 1.0000 120 chr2L:20681886-20682006 1.0000 120 chr3R:27167427-27167547 1.0000 120 chrX:17562061-17562181 1.0000 120 chrX:7604657-7604777 1.0000 120 chr2L:10276969-10277089 1.0000 120 chr2R:11367422-11367542 1.0000 120 chrX:12677118-12677238 1.0000 120 chr2L:427484-427604 1.0000 120 chr3L:2533782-2533902 1.0000 120 chr3R:26953691-26953811 1.0000 120 chr2R:23067475-23067595 1.0000 120 chr2R:7762822-7762942 1.0000 120 chr3R:29211163-29211283 1.0000 120 chr3R:14719520-14719640 1.0000 120 chr2L:246886-247006 1.0000 120 chrX:5972146-5972266 1.0000 120 chr2R:14490775-14490895 1.0000 120 chrX:6344102-6344222 1.0000 120 chrX:3044930-3045050 1.0000 120 chr3L:18822856-18822976 1.0000 120 chr3R:8355123-8355243 1.0000 120 chr3R:25010157-25010277 1.0000 120 chr3R:14715256-14715376 1.0000 120 chr2L:7900129-7900249 1.0000 120 chr3R:5834015-5834135 1.0000 120 chr3L:8441274-8441394 1.0000 120 chr3R:31060316-31060436 1.0000 120 chr3R:20914267-20914387 1.0000 120 chr2L:9915426-9915546 1.0000 120 chr3L:11364376-11364496 1.0000 120 chrX:9305881-9306001 1.0000 120 chrX:14481789-14481909 1.0000 120 chr3R:28859128-28859248 1.0000 120 chrX:8861367-8861487 1.0000 120 chr3L:2472858-2472978 1.0000 120 chr2R:18648037-18648157 1.0000 120 chr2R:11629593-11629713 1.0000 120 chr2L:9576285-9576405 1.0000 120 chr2R:8943738-8943858 1.0000 120 chr3R:13999716-13999836 1.0000 120 chr3R:14061514-14061634 1.0000 120 chr2L:11155337-11155457 1.0000 120 chr3L:12408641-12408761 1.0000 120 chr3L:15260687-15260807 1.0000 120 chr3R:8812710-8812830 1.0000 120 chr3L:8153351-8153471 1.0000 120 chr3R:10079686-10079806 1.0000 120 chr2R:7094361-7094481 1.0000 120 chr2L:14370066-14370186 1.0000 120 chrX:18647112-18647232 1.0000 120 chrX:17531624-17531744 1.0000 120 chr3R:21605347-21605467 1.0000 120 chr2R:21202292-21202412 1.0000 120 chrX:2533970-2534090 1.0000 120 chr2L:18121762-18121882 1.0000 120 chrX:2359984-2360104 1.0000 120 chrX:21064998-21065118 1.0000 120 chr2R:13467014-13467134 1.0000 120 chr2L:1729698-1729818 1.0000 120 chr3L:627100-627220 1.0000 120 chr3R:17703476-17703596 1.0000 120 chrX:20501176-20501296 1.0000 120 chr2R:7768156-7768276 1.0000 120 chr3L:1963165-1963285 1.0000 120 chr3R:21897646-21897766 1.0000 120 chr3L:18011881-18012001 1.0000 120 chr3L:11120458-11120578 1.0000 120 chr2R:6537819-6537939 1.0000 120 chrX:19875058-19875178 1.0000 120 chr2L:2426576-2426696 1.0000 120 chr3R:5209621-5209741 1.0000 120 chrX:4909059-4909179 1.0000 120 chr3R:30796854-30796974 1.0000 120 chr3L:8996281-8996401 1.0000 120 chr3L:22822690-22822810 1.0000 120 chr2L:3703392-3703512 1.0000 120 chr3L:14410444-14410564 1.0000 120 chrX:14947548-14947668 1.0000 120 chr2R:11601003-11601123 1.0000 120 chr3R:15984710-15984830 1.0000 120 chr3L:5249018-5249138 1.0000 120 chr3R:22597754-22597874 1.0000 120 chr2R:14964107-14964227 1.0000 120 chrX:2083243-2083363 1.0000 120 chr2L:479096-479216 1.0000 120 chr2L:16601660-16601780 1.0000 120 chr2R:22317458-22317578 1.0000 120 chr2R:7488942-7489062 1.0000 120 chr2R:23426332-23426452 1.0000 120 chr3R:9598298-9598418 1.0000 120 chrX:13383870-13383990 1.0000 120 chrX:6861914-6862034 1.0000 120 chr3L:14409448-14409568 1.0000 120 chr3R:11582321-11582441 1.0000 120 chr3R:31941681-31941801 1.0000 120 chrX:10263582-10263702 1.0000 120 chrX:13404445-13404565 1.0000 120 chr2L:3440453-3440573 1.0000 120 chr3R:15651861-15651981 1.0000 120 chr3L:636532-636652 1.0000 120 chrX:1845558-1845678 1.0000 120 chr2L:16598496-16598616 1.0000 120 chr3R:30265608-30265728 1.0000 120 chr3L:15580601-15580721 1.0000 120 chr3R:10130174-10130294 1.0000 120 chr2R:17437019-17437139 1.0000 120 chr3L:8920786-8920906 1.0000 120 chr3L:1517619-1517739 1.0000 120 chr2R:24146023-24146143 1.0000 120 chr3R:22624900-22625020 1.0000 120 chr3R:23646324-23646444 1.0000 120 chr3L:791504-791624 1.0000 120 chr3L:16328416-16328536 1.0000 120 chr2R:21076123-21076243 1.0000 120 chr2R:24539270-24539390 1.0000 120 chr2L:2957791-2957911 1.0000 120 chr3L:3418895-3419015 1.0000 120 chr2L:19358100-19358220 1.0000 120 chrX:5724784-5724904 1.0000 120 chr3R:8652901-8653021 1.0000 120 chr2R:11450723-11450843 1.0000 120 chr3L:11246247-11246367 1.0000 120 chrX:6793520-6793640 1.0000 120 chr3L:805820-805940 1.0000 120 chr3L:21828268-21828388 1.0000 120 chr3R:16448815-16448935 1.0000 120 chr2R:24363506-24363626 1.0000 120 chr2R:11188638-11188758 1.0000 120 chr3L:14339002-14339122 1.0000 120 chr3L:16609204-16609324 1.0000 120 chr2L:16495330-16495450 1.0000 120 chrX:8898276-8898396 1.0000 120 chr2R:23745328-23745448 1.0000 120 chr3L:15940944-15941064 1.0000 120 chr2L:7423556-7423676 1.0000 120 chr2R:18302851-18302971 1.0000 120 chr2L:4583424-4583544 1.0000 120 chr2R:24319509-24319629 1.0000 120 chrX:17713932-17714052 1.0000 120 chr2R:20623433-20623553 1.0000 120 chrX:5322566-5322686 1.0000 120 chr2R:8652366-8652486 1.0000 120 chr2R:25019763-25019883 1.0000 120 chr3R:29802918-29803038 1.0000 120 chr2L:7436905-7437025 1.0000 120 chr2R:10731176-10731296 1.0000 120 chr2R:22569911-22570031 1.0000 120 chr2L:11324033-11324153 1.0000 120 chr3L:611736-611856 1.0000 120 chr2L:6922440-6922560 1.0000 120 chr2L:16329226-16329346 1.0000 120 chr2R:16007663-16007783 1.0000 120 chrX:20173773-20173893 1.0000 120 chr3L:12002941-12003061 1.0000 120 chr2L:11123701-11123821 1.0000 120 chr3L:17621612-17621732 1.0000 120 chr2L:10737261-10737381 1.0000 120 chr3R:27263610-27263730 1.0000 120 chr3L:15105034-15105154 1.0000 120 chr3L:3899108-3899228 1.0000 120 chr2R:20531428-20531548 1.0000 120 chr3R:14692375-14692495 1.0000 120 chr3L:11431399-11431519 1.0000 120 chrX:3482813-3482933 1.0000 120 chr2R:22677045-22677165 1.0000 120 chr3R:4215731-4215851 1.0000 120 chr2R:9442866-9442986 1.0000 120 chr2L:20918091-20918211 1.0000 120 chr3L:16105726-16105846 1.0000 120 chr2L:18141532-18141652 1.0000 120 chr2L:9918546-9918666 1.0000 120 chr2R:19805958-19806078 1.0000 120 chr3R:4665142-4665262 1.0000 120 chr3R:29745193-29745313 1.0000 120 chrX:10767521-10767641 1.0000 120 chr3L:13513145-13513265 1.0000 120 chr2R:10894160-10894280 1.0000 120 chr2R:16249970-16250090 1.0000 120 chr2R:21576309-21576429 1.0000 120 chr3R:23940603-23940723 1.0000 120 chr2R:7245678-7245798 1.0000 120 chr2L:5476760-5476880 1.0000 120 chr2R:14270272-14270392 1.0000 120 chr3L:348191-348311 1.0000 120 chr3R:25069785-25069905 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Hr38/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hr38.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.312 C 0.192 G 0.196 T 0.301 Background letter frequencies (from file dataset with add-one prior applied): A 0.312 C 0.192 G 0.196 T 0.301 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SACAGTGG MEME-1 width = 8 sites = 15 llr = 157 E-value = 5.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif SACAGTGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:a:::2 pos.-specific C 7:a::::: probability G 3:::a:a8 matrix T :::::a:: bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 ****** Relative 1.4 ******** Entropy 1.2 ******** (15.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACAGTGG consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SACAGTGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:4215731-4215851 55 8.13e-06 GCGATCGGTG CACAGTGG TACAAGCGCT chr3L:11246247-11246367 94 8.13e-06 ggcgcacaca cacaGTGG GGCACAAATG chrX:5724784-5724904 15 8.13e-06 GGTGGCGCCG CACAGTGG GTGCACACCA chr3L:636532-636652 5 8.13e-06 CCAG CACAGTGG GACCAGAAAA chr3R:31060316-31060436 33 8.13e-06 AACTTGAACG CACAGTGG AACAAATTCC chrX:11451117-11451237 21 8.13e-06 TGGCCAAACT CACAGTGG CTATTGGCTA chrX:8491926-8492046 56 8.13e-06 TAGCGGTGCC CACAGTGG CGGCGAGAAA chr2R:16007663-16007783 26 1.64e-05 GGTGGGTGTA GACAGTGG CGCAGTAAAT chr2R:24539270-24539390 42 1.64e-05 AAAGTCAGTG GACAGTGG CGTCGATCGA chr3R:10130174-10130294 22 1.64e-05 CCTTTTCACT GACAGTGG GATGCATGAT chr3R:21897646-21897766 45 1.64e-05 CCTGGATATC GACAGTGG GACCTCGATA chr3R:29757333-29757453 99 1.64e-05 ATTGATCCGC GACAGTGG ACAAGCCTCC chr2R:19805958-19806078 47 2.94e-05 CTCACAAGTG CACAGTGA GAAATTTCGA chr3L:21828268-21828388 19 2.94e-05 CTATGTAAGG CACAGTGA AGATTGCCAC chrX:2533970-2534090 2 2.94e-05 C CACAGTGA GGACTCGTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SACAGTGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:4215731-4215851 8.1e-06 54_[+1]_58 chr3L:11246247-11246367 8.1e-06 93_[+1]_19 chrX:5724784-5724904 8.1e-06 14_[+1]_98 chr3L:636532-636652 8.1e-06 4_[+1]_108 chr3R:31060316-31060436 8.1e-06 32_[+1]_80 chrX:11451117-11451237 8.1e-06 20_[+1]_92 chrX:8491926-8492046 8.1e-06 55_[+1]_57 chr2R:16007663-16007783 1.6e-05 25_[+1]_87 chr2R:24539270-24539390 1.6e-05 41_[+1]_71 chr3R:10130174-10130294 1.6e-05 21_[+1]_91 chr3R:21897646-21897766 1.6e-05 44_[+1]_68 chr3R:29757333-29757453 1.6e-05 98_[+1]_14 chr2R:19805958-19806078 2.9e-05 46_[+1]_66 chr3L:21828268-21828388 2.9e-05 18_[+1]_94 chrX:2533970-2534090 2.9e-05 1_[+1]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SACAGTGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SACAGTGG width=8 seqs=15 chr3R:4215731-4215851 ( 55) CACAGTGG 1 chr3L:11246247-11246367 ( 94) CACAGTGG 1 chrX:5724784-5724904 ( 15) CACAGTGG 1 chr3L:636532-636652 ( 5) CACAGTGG 1 chr3R:31060316-31060436 ( 33) CACAGTGG 1 chrX:11451117-11451237 ( 21) CACAGTGG 1 chrX:8491926-8492046 ( 56) CACAGTGG 1 chr2R:16007663-16007783 ( 26) GACAGTGG 1 chr2R:24539270-24539390 ( 42) GACAGTGG 1 chr3R:10130174-10130294 ( 22) GACAGTGG 1 chr3R:21897646-21897766 ( 45) GACAGTGG 1 chr3R:29757333-29757453 ( 99) GACAGTGG 1 chr2R:19805958-19806078 ( 47) CACAGTGA 1 chr3L:21828268-21828388 ( 19) CACAGTGA 1 chrX:2533970-2534090 ( 2) CACAGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SACAGTGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 5.7e-001 -1055 180 77 -1055 168 -1055 -1055 -1055 -1055 238 -1055 -1055 168 -1055 -1055 -1055 -1055 -1055 235 -1055 -1055 -1055 -1055 173 -1055 -1055 235 -1055 -64 -1055 203 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SACAGTGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 5.7e-001 0.000000 0.666667 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.000000 0.800000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SACAGTGG MEME-1 regular expression -------------------------------------------------------------------------------- [CG]ACAGTG[GA] -------------------------------------------------------------------------------- Time 7.48 secs. ******************************************************************************** ******************************************************************************** MOTIF GCDGCDSC MEME-2 width = 8 sites = 24 llr = 219 E-value = 2.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCDGCDSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::4::2:: pos.-specific C :a:3a:4a probability G a:47:46: matrix T ::3::4:: bits 2.4 ** * * 2.1 ** * * 1.9 ** * * 1.7 ** * * Relative 1.4 ** ** ** Entropy 1.2 ** ** ** (13.2 bits) 1.0 ** ** ** 0.7 ** ** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCTGC consensus GC GC sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCDSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7423556-7423676 99 2.05e-06 CCCTTTTTCG GCGGCGGC GCCACTGTGC chr3L:5807465-5807585 100 2.05e-06 CATTGAAGAG GCGGCGGC CAGGGGCCGA chr3L:8153351-8153471 110 1.05e-05 TCTTCTCAGT GCAGCGGC AGT chrX:8898276-8898396 92 2.49e-05 GATCGATCTG GCAGCGCC GTGTAAATCT chr2L:479096-479216 47 2.49e-05 CCAATGTTCA GCTGCGGC CTCTCGCTCG chr2R:14964107-14964227 109 2.49e-05 ACTCACGACT GCAGCTGC CGCT chr3R:28859128-28859248 51 2.49e-05 TCGAAAATGT GCAGCTGC TCTCAGCGGC chr2L:246886-247006 43 2.49e-05 TATATCACGT GCTGCGGC AGTGGATGGG chr2R:7246861-7246981 2 2.69e-05 T GCGCCGGC GTGACTCAGC chr3R:4215731-4215851 24 4.30e-05 GTCGCTGCCA GCAGCTCC AACATCAGCA chr3L:1517619-1517739 23 4.30e-05 GTAGAGTTAC GCTGCTGC TAGTGTTTTT chr2R:7244289-7244409 105 4.30e-05 ATGATCTGGC GCAGCTCC TCGGCGTG chr3L:12408641-12408761 104 4.80e-05 TGTGCTTTTC GCGCCTGC CCCTCGCTC chrX:7604657-7604777 100 4.80e-05 AGAGATGAGA GCGCCTGC GCGCACCGAC chrX:8491926-8492046 88 4.80e-05 AGACCCGCAT GCGCCGCC GGCCCATATG chr2L:3440453-3440573 102 5.91e-05 TGCGAGTGTA GCACCGGC CAAACGTGTT chrX:13404445-13404565 94 5.91e-05 TGATCGCAAC GCTGCTCC GCTGGCTTGT chr3R:22597754-22597874 104 5.91e-05 GCTATCGTTC GCTGCTCC CCTCCAGAG chr2R:12595784-12595904 11 5.91e-05 CTATTTTTAT GCGGCACC GCACAACAGC chr3R:27263610-27263730 35 6.21e-05 AACAAAACAT GCGCCTCC AGAGAACAAA chr2R:25019763-25019883 82 8.85e-05 GTCCGGACCA GCAGCACC TATACTTTTA chrX:2533970-2534090 87 8.85e-05 TACTTTAAGT GCTGCAGC GATTGTAACA chr3R:21605347-21605467 107 8.85e-05 TGCAAGAAGC GCAGCACC GACGCC chr2L:18860835-18860955 64 1.04e-04 GACGGGGTCA GCGCCAGC TTGGATTCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCDSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7423556-7423676 2e-06 98_[+2]_14 chr3L:5807465-5807585 2e-06 99_[+2]_13 chr3L:8153351-8153471 1e-05 109_[+2]_3 chrX:8898276-8898396 2.5e-05 91_[+2]_21 chr2L:479096-479216 2.5e-05 46_[+2]_66 chr2R:14964107-14964227 2.5e-05 108_[+2]_4 chr3R:28859128-28859248 2.5e-05 50_[+2]_62 chr2L:246886-247006 2.5e-05 42_[+2]_70 chr2R:7246861-7246981 2.7e-05 1_[+2]_111 chr3R:4215731-4215851 4.3e-05 23_[+2]_89 chr3L:1517619-1517739 4.3e-05 22_[+2]_90 chr2R:7244289-7244409 4.3e-05 104_[+2]_8 chr3L:12408641-12408761 4.8e-05 103_[+2]_9 chrX:7604657-7604777 4.8e-05 99_[+2]_13 chrX:8491926-8492046 4.8e-05 87_[+2]_25 chr2L:3440453-3440573 5.9e-05 101_[+2]_11 chrX:13404445-13404565 5.9e-05 93_[+2]_19 chr3R:22597754-22597874 5.9e-05 103_[+2]_9 chr2R:12595784-12595904 5.9e-05 10_[+2]_102 chr3R:27263610-27263730 6.2e-05 34_[+2]_78 chr2R:25019763-25019883 8.9e-05 81_[+2]_31 chrX:2533970-2534090 8.9e-05 86_[+2]_26 chr3R:21605347-21605467 8.9e-05 106_[+2]_6 chr2L:18860835-18860955 0.0001 63_[+2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCDSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCDGCDSC width=8 seqs=24 chr2L:7423556-7423676 ( 99) GCGGCGGC 1 chr3L:5807465-5807585 ( 100) GCGGCGGC 1 chr3L:8153351-8153471 ( 110) GCAGCGGC 1 chrX:8898276-8898396 ( 92) GCAGCGCC 1 chr2L:479096-479216 ( 47) GCTGCGGC 1 chr2R:14964107-14964227 ( 109) GCAGCTGC 1 chr3R:28859128-28859248 ( 51) GCAGCTGC 1 chr2L:246886-247006 ( 43) GCTGCGGC 1 chr2R:7246861-7246981 ( 2) GCGCCGGC 1 chr3R:4215731-4215851 ( 24) GCAGCTCC 1 chr3L:1517619-1517739 ( 23) GCTGCTGC 1 chr2R:7244289-7244409 ( 105) GCAGCTCC 1 chr3L:12408641-12408761 ( 104) GCGCCTGC 1 chrX:7604657-7604777 ( 100) GCGCCTGC 1 chrX:8491926-8492046 ( 88) GCGCCGCC 1 chr2L:3440453-3440573 ( 102) GCACCGGC 1 chrX:13404445-13404565 ( 94) GCTGCTCC 1 chr3R:22597754-22597874 ( 104) GCTGCTCC 1 chr2R:12595784-12595904 ( 11) GCGGCACC 1 chr3R:27263610-27263730 ( 35) GCGCCTCC 1 chr2R:25019763-25019883 ( 82) GCAGCACC 1 chrX:2533970-2534090 ( 87) GCTGCAGC 1 chr3R:21605347-21605467 ( 107) GCAGCACC 1 chr2L:18860835-18860955 ( 64) GCGCCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCDSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1076 E= 2.4e+002 -1123 -1123 235 -1123 -1123 238 -1123 -1123 27 -1123 94 -27 -1123 61 185 -1123 -1123 238 -1123 -1123 -58 -1123 94 47 -1123 112 157 -1123 -1123 238 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCDSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.4e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.000000 0.375000 0.250000 0.000000 0.291667 0.708333 0.000000 0.000000 1.000000 0.000000 0.000000 0.208333 0.000000 0.375000 0.416667 0.000000 0.416667 0.583333 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCDSC MEME-2 regular expression -------------------------------------------------------------------------------- GC[AGT][GC]C[TGA][GC]C -------------------------------------------------------------------------------- Time 13.77 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAMAAAA MEME-3 width = 8 sites = 49 llr = 389 E-value = 6.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A aa93a8aa pos.-specific C ::14:::: probability G :::2:2:: matrix T :::::::: bits 2.4 2.1 1.9 1.7 ** * ** Relative 1.4 ** * ** Entropy 1.2 *** **** (11.5 bits) 1.0 *** **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAACAAAA consensus A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:27263610-27263730 24 5.53e-05 GTGCACGAAA AAACAAAA CATGCGCCTC chrX:8898276-8898396 21 5.53e-05 CCAAAACGAA AAACAAAA GGAGATGGAA chr3L:805820-805940 66 5.53e-05 TAATTTCACC AAACAAAA GACTTATTTT chr3R:22624900-22625020 28 5.53e-05 CCTCTAATTC AAACAAAA CCATTGCTTG chr2R:24146023-24146143 27 5.53e-05 TGCACGGCCa aaacaaaa taaaataaaa chrX:10263582-10263702 47 5.53e-05 TATAATTGGC AAACAAAA CTATGTTTCT chr2R:14964107-14964227 72 5.53e-05 AAAATAGAGG AAACAAAA GACAATCAGG chr3R:21605347-21605467 62 5.53e-05 caaaaacgaa aaacaaaa gggaaaataa chr2L:9915426-9915546 101 5.53e-05 GTTGAATCGA AAACAAAA ATCCGCCTTC chr3R:20914267-20914387 108 5.53e-05 aacaaaagca aaacaaaa aacga chr3R:14715256-14715376 33 5.53e-05 CGTACACTGG AAACAAAA TGTAAAGGAC chrX:6344102-6344222 17 5.53e-05 GTGAAATAAT AAACAAAA GTAATATCAA chr2R:11367422-11367542 40 5.53e-05 CAGAAAAAAC AAACAAAA ACAGTCGATG chrX:7604657-7604777 35 5.53e-05 aaaagaaata aaacaaaa ataataaaag chr3L:6274981-6275101 75 5.53e-05 aaaaaaagaa aaacaaaa aaaaacaaca chr3L:813323-813443 94 5.53e-05 ATTATCCGAA AAACAAAA CTATCCCATT chr2R:20531428-20531548 12 1.45e-04 GTACACTGCA AAAAAAAA GTCGCGAAAC chr3L:12002941-12003061 78 1.45e-04 TAAATTAACA AAAAAAAA TGGGTTTTGT chr2R:25019763-25019883 25 1.45e-04 ACATGCAGAG AAAAAAAA TGTACAAATG chr2R:11188638-11188758 63 1.45e-04 GTGCACGAAG AAAAAAAA CGTGGTAGCT chr2R:17437019-17437139 35 1.45e-04 TACAAAAATT Aaaaaaaa gagagaagaa chr3L:15580601-15580721 51 1.45e-04 TTTATTGTTA AAAAAAAA TCAATTGATT chrX:4909059-4909179 68 1.45e-04 ATCGGGCCCC AAAAAAAA GGGAAAAAAG chrX:17531624-17531744 49 1.45e-04 AAAGCCACCG AAAAAAAA ATGAGAAAAA chrX:9305881-9306001 76 1.45e-04 aaagcaacac aaaaaaaa aCGGTAAGCA chrX:17562061-17562181 28 1.45e-04 GTTTTGTTAC AAAAAAAA TTAAGTCTGC chr3R:8106468-8106588 13 1.45e-04 GATAAATGAA AAAAAAAA TCAGTCAGTC chr3L:10792689-10792809 109 1.45e-04 CACAACAACG aaaaaaaa agaa chr2R:21576309-21576429 7 2.01e-04 GCACTG AAAGAAAA AACTATCTAA chr3L:14339002-14339122 6 2.01e-04 CACTG AAAGAAAA CTACCAATTT chr3R:31941681-31941801 111 2.01e-04 GAAATTAAGA AAAGAAAA TC chr3L:22822690-22822810 36 2.01e-04 ATAAAGACAA AAAGAAAA ATAAAGCAAA chr3R:5209621-5209741 63 2.01e-04 TTGGTAATTC AAAGAAAA GCCACTCTCG chr2R:14490775-14490895 31 2.01e-04 gaaaatgaaa aaagaaaa aaaTGCAAGA chr2L:7376319-7376439 50 2.01e-04 AAACATACTA AAAGAAAA TCGTTACTTT chr2R:23761430-23761550 96 2.01e-04 AAACGATTGA AAAGAAAA ATGTAATGCA chr3L:15940944-15941064 20 2.36e-04 ATGAAAATAA AAACAGAA ATAAATACAT chr3R:28859128-28859248 106 2.36e-04 CCCGAGCTCG AAACAGAA CGATCCA chr2L:11324033-11324153 41 2.70e-04 TAAATTTAAC AACCAAAA GCCGCAAAAT chr3L:791504-791624 89 2.70e-04 ACTCCGATTG AACCAAAA ACTGATTATT chr3R:17703476-17703596 23 2.70e-04 TTATATTTTT AACCAAAA TGTTATGGAA chr2L:246886-247006 15 2.70e-04 ataaagagca aaccaaaa gcaaagcaTG chr3R:14692375-14692495 94 3.27e-04 TTACGATTTT AAAAAGAA GAGCTCCGAT chrX:13383870-13383990 6 3.27e-04 GAGCT AAAAAGAA TCGATTGACG chr3R:10079686-10079806 23 3.27e-04 TACACAGGGC AAAAAGAA TGAATGGATA chr3L:8153351-8153471 86 3.27e-04 TAGTAAAATA AAAAAGAA GATCATTCTT chr2L:18707923-18708043 24 3.27e-04 AAACAAATTT AAAAAGAA TTTAGAATAA chr3L:18822856-18822976 87 3.62e-04 AAAAAGACAA AAAGAGAA GGGAGAAGCA chrX:5322566-5322686 82 4.52e-04 GAATTCGGTT AACGAAAA CTTATCATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:27263610-27263730 5.5e-05 23_[+3]_89 chrX:8898276-8898396 5.5e-05 20_[+3]_92 chr3L:805820-805940 5.5e-05 65_[+3]_47 chr3R:22624900-22625020 5.5e-05 27_[+3]_85 chr2R:24146023-24146143 5.5e-05 26_[+3]_86 chrX:10263582-10263702 5.5e-05 46_[+3]_66 chr2R:14964107-14964227 5.5e-05 71_[+3]_41 chr3R:21605347-21605467 5.5e-05 61_[+3]_51 chr2L:9915426-9915546 5.5e-05 100_[+3]_12 chr3R:20914267-20914387 5.5e-05 107_[+3]_5 chr3R:14715256-14715376 5.5e-05 32_[+3]_80 chrX:6344102-6344222 5.5e-05 16_[+3]_96 chr2R:11367422-11367542 5.5e-05 39_[+3]_73 chrX:7604657-7604777 5.5e-05 34_[+3]_78 chr3L:6274981-6275101 5.5e-05 74_[+3]_38 chr3L:813323-813443 5.5e-05 93_[+3]_19 chr2R:20531428-20531548 0.00015 11_[+3]_101 chr3L:12002941-12003061 0.00015 77_[+3]_35 chr2R:25019763-25019883 0.00015 24_[+3]_88 chr2R:11188638-11188758 0.00015 62_[+3]_50 chr2R:17437019-17437139 0.00015 34_[+3]_78 chr3L:15580601-15580721 0.00015 50_[+3]_62 chrX:4909059-4909179 0.00015 67_[+3]_45 chrX:17531624-17531744 0.00015 48_[+3]_64 chrX:9305881-9306001 0.00015 75_[+3]_37 chrX:17562061-17562181 0.00015 27_[+3]_85 chr3R:8106468-8106588 0.00015 12_[+3]_100 chr3L:10792689-10792809 0.00015 108_[+3]_4 chr2R:21576309-21576429 0.0002 6_[+3]_106 chr3L:14339002-14339122 0.0002 5_[+3]_107 chr3R:31941681-31941801 0.0002 110_[+3]_2 chr3L:22822690-22822810 0.0002 35_[+3]_77 chr3R:5209621-5209741 0.0002 62_[+3]_50 chr2R:14490775-14490895 0.0002 30_[+3]_82 chr2L:7376319-7376439 0.0002 49_[+3]_63 chr2R:23761430-23761550 0.0002 95_[+3]_17 chr3L:15940944-15941064 0.00024 19_[+3]_93 chr3R:28859128-28859248 0.00024 105_[+3]_7 chr2L:11324033-11324153 0.00027 40_[+3]_72 chr3L:791504-791624 0.00027 88_[+3]_24 chr3R:17703476-17703596 0.00027 22_[+3]_90 chr2L:246886-247006 0.00027 14_[+3]_98 chr3R:14692375-14692495 0.00033 93_[+3]_19 chrX:13383870-13383990 0.00033 5_[+3]_107 chr3R:10079686-10079806 0.00033 22_[+3]_90 chr3L:8153351-8153471 0.00033 85_[+3]_27 chr2L:18707923-18708043 0.00033 23_[+3]_89 chr3L:18822856-18822976 0.00036 86_[+3]_26 chrX:5322566-5322686 0.00045 81_[+3]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAMAAAA width=8 seqs=49 chr3R:27263610-27263730 ( 24) AAACAAAA 1 chrX:8898276-8898396 ( 21) AAACAAAA 1 chr3L:805820-805940 ( 66) AAACAAAA 1 chr3R:22624900-22625020 ( 28) AAACAAAA 1 chr2R:24146023-24146143 ( 27) AAACAAAA 1 chrX:10263582-10263702 ( 47) AAACAAAA 1 chr2R:14964107-14964227 ( 72) AAACAAAA 1 chr3R:21605347-21605467 ( 62) AAACAAAA 1 chr2L:9915426-9915546 ( 101) AAACAAAA 1 chr3R:20914267-20914387 ( 108) AAACAAAA 1 chr3R:14715256-14715376 ( 33) AAACAAAA 1 chrX:6344102-6344222 ( 17) AAACAAAA 1 chr2R:11367422-11367542 ( 40) AAACAAAA 1 chrX:7604657-7604777 ( 35) AAACAAAA 1 chr3L:6274981-6275101 ( 75) AAACAAAA 1 chr3L:813323-813443 ( 94) AAACAAAA 1 chr2R:20531428-20531548 ( 12) AAAAAAAA 1 chr3L:12002941-12003061 ( 78) AAAAAAAA 1 chr2R:25019763-25019883 ( 25) AAAAAAAA 1 chr2R:11188638-11188758 ( 63) AAAAAAAA 1 chr2R:17437019-17437139 ( 35) AAAAAAAA 1 chr3L:15580601-15580721 ( 51) AAAAAAAA 1 chrX:4909059-4909179 ( 68) AAAAAAAA 1 chrX:17531624-17531744 ( 49) AAAAAAAA 1 chrX:9305881-9306001 ( 76) AAAAAAAA 1 chrX:17562061-17562181 ( 28) AAAAAAAA 1 chr3R:8106468-8106588 ( 13) AAAAAAAA 1 chr3L:10792689-10792809 ( 109) AAAAAAAA 1 chr2R:21576309-21576429 ( 7) AAAGAAAA 1 chr3L:14339002-14339122 ( 6) AAAGAAAA 1 chr3R:31941681-31941801 ( 111) AAAGAAAA 1 chr3L:22822690-22822810 ( 36) AAAGAAAA 1 chr3R:5209621-5209741 ( 63) AAAGAAAA 1 chr2R:14490775-14490895 ( 31) AAAGAAAA 1 chr2L:7376319-7376439 ( 50) AAAGAAAA 1 chr2R:23761430-23761550 ( 96) AAAGAAAA 1 chr3L:15940944-15941064 ( 20) AAACAGAA 1 chr3R:28859128-28859248 ( 106) AAACAGAA 1 chr2L:11324033-11324153 ( 41) AACCAAAA 1 chr3L:791504-791624 ( 89) AACCAAAA 1 chr3R:17703476-17703596 ( 23) AACCAAAA 1 chr2L:246886-247006 ( 15) AACCAAAA 1 chr3R:14692375-14692495 ( 94) AAAAAGAA 1 chrX:13383870-13383990 ( 6) AAAAAGAA 1 chr3R:10079686-10079806 ( 23) AAAAAGAA 1 chr3L:8153351-8153471 ( 86) AAAAAGAA 1 chr2L:18707923-18708043 ( 24) AAAAAGAA 1 chr3L:18822856-18822976 ( 87) AAAGAGAA 1 chrX:5322566-5322686 ( 82) AACGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2866 E= 6.8e+002 168 -1226 -1226 -1226 168 -1226 -1226 -1226 153 -91 -1226 -1226 15 123 6 -1226 168 -1226 -1226 -1226 142 -1226 -26 -1226 168 -1226 -1226 -1226 168 -1226 -1226 -1226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 6.8e+002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.897959 0.102041 0.000000 0.000000 0.346939 0.448980 0.204082 0.000000 1.000000 0.000000 0.000000 0.000000 0.836735 0.000000 0.163265 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-3 regular expression -------------------------------------------------------------------------------- AAA[CAG]AAAA -------------------------------------------------------------------------------- Time 20.02 secs. ******************************************************************************** ******************************************************************************** MOTIF SGCAACGC MEME-4 width = 8 sites = 11 llr = 111 E-value = 7.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGCAACGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a8::: pos.-specific C 4:a::918 probability G 6a::2192 matrix T :::::::: bits 2.4 ** 2.1 ** 1.9 ** ** 1.7 *** *** Relative 1.4 **** *** Entropy 1.2 ******** (14.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCAACGC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCAACGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23940603-23940723 50 5.19e-06 AGTACTTGTG GGCAACGC TATTTACTTG chr3R:8106468-8106588 108 5.19e-06 CAAGCGGCCT GGCAACGC TGAAA chr3L:19491475-19491595 26 5.19e-06 GAAGAGCGAT GGCAACGC ACACGAGTAA chrX:19875058-19875178 1 1.03e-05 . CGCAACGC AGTGCACGCT chr2L:1086469-1086589 44 1.03e-05 AATTAAGGAA CGCAACGC GGCGTATACG chr2L:2957791-2957911 79 1.35e-05 GCCCTGCTTA GGCAGCGC AGTTGCCGTC chrX:7604657-7604777 7 1.35e-05 GCAGTC GGCAGCGC AGTCGACGCa chr3L:6274981-6275101 16 2.72e-05 CAAACGAAAT CGCAACGG CCTCTTGCCA chr2R:18224964-18225084 58 2.72e-05 TATTTTACCA CGCAACGG ATTAAAGCAA chr2R:24363506-24363626 71 3.76e-05 CCAAGTAAAT GGCAAGGC ATTTAAACAG chr2L:18456235-18456355 95 3.76e-05 TCTGCGCGAT GGCAACCC TGGCAGCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCAACGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23940603-23940723 5.2e-06 49_[+4]_63 chr3R:8106468-8106588 5.2e-06 107_[+4]_5 chr3L:19491475-19491595 5.2e-06 25_[+4]_87 chrX:19875058-19875178 1e-05 [+4]_112 chr2L:1086469-1086589 1e-05 43_[+4]_69 chr2L:2957791-2957911 1.4e-05 78_[+4]_34 chrX:7604657-7604777 1.4e-05 6_[+4]_106 chr3L:6274981-6275101 2.7e-05 15_[+4]_97 chr2R:18224964-18225084 2.7e-05 57_[+4]_55 chr2R:24363506-24363626 3.8e-05 70_[+4]_42 chr2L:18456235-18456355 3.8e-05 94_[+4]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCAACGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGCAACGC width=8 seqs=11 chr3R:23940603-23940723 ( 50) GGCAACGC 1 chr3R:8106468-8106588 ( 108) GGCAACGC 1 chr3L:19491475-19491595 ( 26) GGCAACGC 1 chrX:19875058-19875178 ( 1) CGCAACGC 1 chr2L:1086469-1086589 ( 44) CGCAACGC 1 chr2L:2957791-2957911 ( 79) GGCAGCGC 1 chrX:7604657-7604777 ( 7) GGCAGCGC 1 chr3L:6274981-6275101 ( 16) CGCAACGG 1 chr2R:18224964-18225084 ( 58) CGCAACGG 1 chr2R:24363506-24363626 ( 71) GGCAAGGC 1 chr2L:18456235-18456355 ( 95) GGCAACCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCAACGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6812 E= 7.0e+004 -1010 92 170 -1010 -1010 -1010 235 -1010 -1010 238 -1010 -1010 168 -1010 -1010 -1010 139 -1010 -11 -1010 -1010 225 -111 -1010 -1010 -107 221 -1010 -1010 209 -11 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCAACGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 7.0e+004 0.000000 0.363636 0.636364 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.818182 0.000000 0.181818 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 0.818182 0.181818 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCAACGC MEME-4 regular expression -------------------------------------------------------------------------------- [GC]GCAACGC -------------------------------------------------------------------------------- Time 26.16 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTG MEME-5 width = 8 sites = 23 llr = 207 E-value = 6.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::1 pos.-specific C ::::322: probability G :a:a:7:9 matrix T a:a:727: bits 2.4 * * 2.1 * * 1.9 * * * 1.7 **** * Relative 1.4 **** * Entropy 1.2 ***** * (13.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3482813-3482933 23 1.21e-05 AATTGGGAAA TGTGTGTG TCAGTAAAAT chrX:13383870-13383990 103 1.21e-05 CGGACGCCAC TGTGTGTG TTTATGTATG chr3L:11120458-11120578 97 1.21e-05 GCTGCGTGTT TGTGTGTG TATATTATTT chr3L:627100-627220 77 1.21e-05 CGCGTGCGTT TGTGTGTG AATCTTTACA chr3L:18822856-18822976 38 1.21e-05 TGTGTGTGCG TGTGTGTG CCGGCAGGAA chr2R:23067475-23067595 95 1.21e-05 TGTGTGAGTC TGTGTGTG CAGTACGCAA chr2R:24539270-24539390 8 1.98e-05 GCGCATG TGTGCGTG TGTGACACGG chr2R:21076123-21076243 1 1.98e-05 . TGTGCGTG TCTTTTATCA chr3L:1963165-1963285 96 1.98e-05 GTAACTCTTT TGTGCGTG CGATTACGTG chrX:10767521-10767641 85 2.76e-05 TCTGTGTGCC TGTGTGCG CGTGTATGCG chr2R:7244289-7244409 43 2.76e-05 CGCACTGCCC TGTGTGCG CATCCTCGAC chr3R:27263610-27263730 76 3.94e-05 AAAGGAGGAG TGTGTCTG TATGCGCCGC chr2R:23567372-23567492 51 3.94e-05 CTGACAATAT TGTGTCTG TAGGATCTAC chr2L:13921203-13921323 97 3.94e-05 AACTGGCAAC TGTGTCTG TGTTCGATCG chr3L:14409448-14409568 87 4.44e-05 GACTGACTGT TGTGCGCG CGTTGACGCT chrX:19875058-19875178 48 6.30e-05 GCAACACAAT TGTGTTTG TAGGCCATAA chr3L:2533782-2533902 4 6.30e-05 TGC TGTGTTTG ACCCATATTG chrX:1845558-1845678 8 9.00e-05 GACCATT TGTGCttg ctatttgctc chr3R:30265608-30265728 98 9.79e-05 TGTGGGGAGT TGTGTGGG CTGGCACATG chrX:13404445-13404565 28 1.10e-04 tttttgtttt tgtgttcg ctttgttttt chr2L:18860835-18860955 26 1.15e-04 AGGAGATCGA TGTGCCCG CCGAGGCCGA chr2R:14270272-14270392 79 1.34e-04 TTCTGCCGCG TGTGTGTA GCGCGGCCCG chr3R:23940603-23940723 74 1.34e-04 CTTGAACTAA TGTGTGTA CATTTGTCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3482813-3482933 1.2e-05 22_[+5]_90 chrX:13383870-13383990 1.2e-05 102_[+5]_10 chr3L:11120458-11120578 1.2e-05 96_[+5]_16 chr3L:627100-627220 1.2e-05 76_[+5]_36 chr3L:18822856-18822976 1.2e-05 37_[+5]_75 chr2R:23067475-23067595 1.2e-05 94_[+5]_18 chr2R:24539270-24539390 2e-05 7_[+5]_105 chr2R:21076123-21076243 2e-05 [+5]_112 chr3L:1963165-1963285 2e-05 95_[+5]_17 chrX:10767521-10767641 2.8e-05 84_[+5]_28 chr2R:7244289-7244409 2.8e-05 42_[+5]_70 chr3R:27263610-27263730 3.9e-05 75_[+5]_37 chr2R:23567372-23567492 3.9e-05 50_[+5]_62 chr2L:13921203-13921323 3.9e-05 96_[+5]_16 chr3L:14409448-14409568 4.4e-05 86_[+5]_26 chrX:19875058-19875178 6.3e-05 47_[+5]_65 chr3L:2533782-2533902 6.3e-05 3_[+5]_109 chrX:1845558-1845678 9e-05 7_[+5]_105 chr3R:30265608-30265728 9.8e-05 97_[+5]_15 chrX:13404445-13404565 0.00011 27_[+5]_85 chr2L:18860835-18860955 0.00011 25_[+5]_87 chr2R:14270272-14270392 0.00013 78_[+5]_34 chr3R:23940603-23940723 0.00013 73_[+5]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTG width=8 seqs=23 chrX:3482813-3482933 ( 23) TGTGTGTG 1 chrX:13383870-13383990 ( 103) TGTGTGTG 1 chr3L:11120458-11120578 ( 97) TGTGTGTG 1 chr3L:627100-627220 ( 77) TGTGTGTG 1 chr3L:18822856-18822976 ( 38) TGTGTGTG 1 chr2R:23067475-23067595 ( 95) TGTGTGTG 1 chr2R:24539270-24539390 ( 8) TGTGCGTG 1 chr2R:21076123-21076243 ( 1) TGTGCGTG 1 chr3L:1963165-1963285 ( 96) TGTGCGTG 1 chrX:10767521-10767641 ( 85) TGTGTGCG 1 chr2R:7244289-7244409 ( 43) TGTGTGCG 1 chr3R:27263610-27263730 ( 76) TGTGTCTG 1 chr2R:23567372-23567492 ( 51) TGTGTCTG 1 chr2L:13921203-13921323 ( 97) TGTGTCTG 1 chr3L:14409448-14409568 ( 87) TGTGCGCG 1 chrX:19875058-19875178 ( 48) TGTGTTTG 1 chr3L:2533782-2533902 ( 4) TGTGTTTG 1 chrX:1845558-1845678 ( 8) TGTGCTTG 1 chr3R:30265608-30265728 ( 98) TGTGTGGG 1 chrX:13404445-13404565 ( 28) TGTGTTCG 1 chr2L:18860835-18860955 ( 26) TGTGCCCG 1 chr2R:14270272-14270392 ( 79) TGTGTGTA 1 chr3R:23940603-23940723 ( 74) TGTGTGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.326 E= 6.4e+004 -1117 -1117 -1117 173 -1117 -1117 235 -1117 -1117 -1117 -1117 173 -1117 -1117 235 -1117 -1117 45 -1117 130 -1117 -14 173 -79 -1117 18 -217 130 -184 -1117 222 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 6.4e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.260870 0.000000 0.739130 0.000000 0.173913 0.652174 0.173913 0.000000 0.217391 0.043478 0.739130 0.086957 0.000000 0.913043 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 regular expression -------------------------------------------------------------------------------- TGTG[TC]G[TC]G -------------------------------------------------------------------------------- Time 32.28 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:13921203-13921323 3.60e-03 96_[+5(3.94e-05)]_16 chr2R:8358045-8358165 6.61e-01 120 chr2R:7246657-7246777 2.36e-01 120 chr3R:21733127-21733247 6.52e-02 120 chr3R:24996683-24996803 1.22e-01 97_[+4(9.34e-05)]_15 chr3L:5834387-5834507 1.12e-01 120 chr2L:1916568-1916688 5.57e-01 120 chr2R:23672701-23672821 2.12e-02 120 chr2R:7246861-7246981 1.95e-03 1_[+2(2.69e-05)]_15_[+4(7.14e-05)]_\ 88 chr2R:23761430-23761550 2.80e-01 120 chr2L:2184294-2184414 9.66e-01 120 chr2R:1522466-1522586 9.80e-02 120 chr3L:5807465-5807585 1.62e-03 99_[+2(2.05e-06)]_13 chr2L:2249555-2249675 1.22e-01 120 chr3L:6482966-6483086 6.97e-01 120 chr3L:813323-813443 8.81e-02 93_[+3(5.53e-05)]_19 chr3R:29757333-29757453 2.84e-02 98_[+1(1.64e-05)]_14 chr2L:18860835-18860955 1.69e-03 120 chr3R:6214337-6214457 4.53e-01 120 chr2L:18456235-18456355 5.27e-02 94_[+4(3.76e-05)]_18 chr3R:14847291-14847411 4.82e-01 120 chr2R:23770171-23770291 3.61e-01 120 chr3R:14720287-14720407 9.17e-01 120 chr2L:14224146-14224266 1.48e-01 120 chr2R:18355938-18356058 9.98e-01 120 chr2R:7244289-7244409 6.57e-04 42_[+5(2.76e-05)]_54_[+2(4.30e-05)]_\ 8 chr2L:11950055-11950175 8.00e-01 120 chr2L:1086469-1086589 5.38e-02 43_[+4(1.03e-05)]_69 chr3R:13952467-13952587 8.49e-01 120 chr3L:19491475-19491595 1.40e-02 25_[+4(5.19e-06)]_87 chr2L:2802691-2802811 3.61e-01 120 chr2L:7376319-7376439 2.59e-01 120 chr3R:31680922-31681042 1.15e-01 120 chr3R:13974861-13974981 6.32e-01 120 chr2R:18224964-18225084 7.21e-02 57_[+4(2.72e-05)]_55 chr2L:2413293-2413413 8.52e-01 120 chr3L:8419156-8419276 9.91e-01 120 chr2R:9557555-9557675 3.14e-01 120 chr3R:29847198-29847318 3.99e-01 120 chr3R:30095981-30096101 6.65e-01 120 chr2R:23567372-23567492 1.79e-02 50_[+5(3.94e-05)]_62 chr3L:6274981-6275101 8.25e-04 15_[+4(2.72e-05)]_51_[+3(5.53e-05)]_\ 38 chr3L:13495172-13495292 1.35e-01 120 chr3R:30840866-30840986 5.05e-01 120 chr2R:12595784-12595904 9.39e-03 10_[+2(5.91e-05)]_102 chr3R:31443628-31443748 3.76e-01 120 chr3L:19315048-19315168 1.00e+00 120 chr3L:1844746-1844866 9.94e-01 120 chr3L:787715-787835 5.98e-01 120 chr3R:14070213-14070333 1.19e-01 120 chr3L:10792689-10792809 2.27e-02 120 chr2L:7313579-7313699 8.23e-01 120 chrX:8491926-8492046 8.89e-04 55_[+1(8.13e-06)]_24_[+2(4.80e-05)]_\ 25 chr2L:4347142-4347262 1.16e-01 120 chr3R:13716933-13717053 6.76e-01 120 chrX:11451117-11451237 2.42e-02 20_[+1(8.13e-06)]_92 chr2L:18341043-18341163 3.78e-01 120 chr2L:3882365-3882485 8.50e-01 120 chr3L:11656345-11656465 6.59e-01 120 chrX:14953134-14953254 3.78e-02 120 chr3L:4304697-4304817 9.72e-01 120 chr2L:18707923-18708043 4.41e-01 120 chr3R:8106468-8106588 6.35e-03 107_[+4(5.19e-06)]_5 chrX:9460757-9460877 6.96e-01 120 chrX:12226718-12226838 6.90e-01 120 chr2L:20681886-20682006 8.93e-01 120 chr3R:27167427-27167547 8.17e-01 120 chrX:17562061-17562181 3.16e-01 120 chrX:7604657-7604777 2.82e-05 6_[+4(1.35e-05)]_20_[+3(5.53e-05)]_\ 57_[+2(4.80e-05)]_13 chr2L:10276969-10277089 3.67e-01 120 chr2R:11367422-11367542 4.40e-02 39_[+3(5.53e-05)]_73 chrX:12677118-12677238 1.14e-01 93_[+3(5.53e-05)]_19 chr2L:427484-427604 6.36e-01 120 chr3L:2533782-2533902 1.47e-01 3_[+5(6.30e-05)]_109 chr3R:26953691-26953811 8.38e-01 120 chr2R:23067475-23067595 8.17e-02 58_[+5(1.98e-05)]_12_[+5(7.05e-05)]_\ 8_[+5(1.21e-05)]_18 chr2R:7762822-7762942 3.31e-01 120 chr3R:29211163-29211283 8.00e-01 120 chr3R:14719520-14719640 9.08e-01 120 chr2L:246886-247006 2.50e-05 42_[+2(2.49e-05)]_70 chrX:5972146-5972266 3.37e-02 120 chr2R:14490775-14490895 2.63e-01 120 chrX:6344102-6344222 8.13e-02 16_[+3(5.53e-05)]_96 chrX:3044930-3045050 9.55e-01 120 chr3L:18822856-18822976 6.43e-04 27_[+5(1.21e-05)]_2_[+5(1.21e-05)]_\ 75 chr3R:8355123-8355243 9.50e-01 120 chr3R:25010157-25010277 9.94e-01 120 chr3R:14715256-14715376 2.35e-02 32_[+3(5.53e-05)]_80 chr2L:7900129-7900249 8.24e-01 120 chr3R:5834015-5834135 1.23e-01 120 chr3L:8441274-8441394 2.68e-01 120 chr3R:31060316-31060436 5.46e-02 32_[+1(8.13e-06)]_80 chr3R:20914267-20914387 1.88e-01 96_[+3(5.53e-05)]_3_[+3(5.53e-05)]_\ 5 chr2L:9915426-9915546 1.17e-01 100_[+3(5.53e-05)]_12 chr3L:11364376-11364496 2.61e-01 120 chrX:9305881-9306001 1.15e-01 120 chrX:14481789-14481909 2.40e-01 120 chr3R:28859128-28859248 1.33e-03 50_[+2(2.49e-05)]_62 chrX:8861367-8861487 9.49e-01 120 chr3L:2472858-2472978 3.07e-01 120 chr2R:18648037-18648157 9.98e-01 120 chr2R:11629593-11629713 6.92e-03 120 chr2L:9576285-9576405 9.47e-02 120 chr2R:8943738-8943858 8.70e-02 120 chr3R:13999716-13999836 7.38e-01 120 chr3R:14061514-14061634 7.33e-01 120 chr2L:11155337-11155457 5.59e-01 120 chr3L:12408641-12408761 3.08e-03 103_[+2(4.80e-05)]_9 chr3L:15260687-15260807 1.58e-01 120 chr3R:8812710-8812830 9.31e-01 120 chr3L:8153351-8153471 1.15e-03 109_[+2(1.05e-05)]_3 chr3R:10079686-10079806 2.33e-02 120 chr2R:7094361-7094481 3.99e-01 120 chr2L:14370066-14370186 9.68e-01 120 chrX:18647112-18647232 8.42e-02 120 chrX:17531624-17531744 2.47e-02 120 chr3R:21605347-21605467 1.83e-03 61_[+3(5.53e-05)]_37_[+2(8.85e-05)]_\ 6 chr2R:21202292-21202412 8.52e-01 120 chrX:2533970-2534090 2.32e-03 1_[+1(2.94e-05)]_77_[+2(8.85e-05)]_\ 26 chr2L:18121762-18121882 9.86e-01 120 chrX:2359984-2360104 6.51e-01 120 chrX:21064998-21065118 5.07e-01 120 chr2R:13467014-13467134 4.84e-01 120 chr2L:1729698-1729818 9.88e-01 120 chr3L:627100-627220 1.81e-02 76_[+5(1.21e-05)]_36 chr3R:17703476-17703596 5.64e-01 120 chrX:20501176-20501296 7.90e-01 120 chr2R:7768156-7768276 7.48e-01 120 chr3L:1963165-1963285 2.85e-02 95_[+5(1.98e-05)]_17 chr3R:21897646-21897766 5.52e-02 44_[+1(1.64e-05)]_68 chr3L:18011881-18012001 2.05e-01 120 chr3L:11120458-11120578 6.75e-02 96_[+5(1.21e-05)]_16 chr2R:6537819-6537939 3.34e-01 120 chrX:19875058-19875178 9.44e-04 [+4(1.03e-05)]_39_[+5(6.30e-05)]_65 chr2L:2426576-2426696 6.19e-01 120 chr3R:5209621-5209741 3.82e-01 120 chrX:4909059-4909179 3.03e-01 120 chr3R:30796854-30796974 3.27e-01 120 chr3L:8996281-8996401 1.70e-01 120 chr3L:22822690-22822810 2.42e-01 120 chr2L:3703392-3703512 5.09e-01 120 chr3L:14410444-14410564 9.39e-02 120 chrX:14947548-14947668 6.92e-01 120 chr2R:11601003-11601123 6.20e-01 120 chr3R:15984710-15984830 3.66e-01 120 chr3L:5249018-5249138 7.78e-01 120 chr3R:22597754-22597874 1.69e-01 103_[+2(5.91e-05)]_9 chr2R:14964107-14964227 3.86e-03 71_[+3(5.53e-05)]_29_[+2(2.49e-05)]_\ 4 chrX:2083243-2083363 7.86e-02 120 chr2L:479096-479216 1.92e-02 46_[+2(2.49e-05)]_66 chr2L:16601660-16601780 2.41e-01 120 chr2R:22317458-22317578 9.39e-01 120 chr2R:7488942-7489062 2.29e-01 23_[+4(7.78e-05)]_89 chr2R:23426332-23426452 6.69e-01 120 chr3R:9598298-9598418 4.26e-01 120 chrX:13383870-13383990 8.43e-04 61_[+5(2.76e-05)]_33_[+5(1.21e-05)]_\ 10 chrX:6861914-6862034 6.51e-01 120 chr3L:14409448-14409568 3.56e-02 86_[+5(4.44e-05)]_26 chr3R:11582321-11582441 5.82e-01 120 chr3R:31941681-31941801 4.11e-02 120 chrX:10263582-10263702 1.51e-02 46_[+3(5.53e-05)]_66 chrX:13404445-13404565 3.52e-04 87_[+4(1.03e-05)]_25 chr2L:3440453-3440573 1.03e-01 101_[+2(5.91e-05)]_11 chr3R:15651861-15651981 7.75e-02 120 chr3L:636532-636652 3.23e-02 4_[+1(8.13e-06)]_108 chrX:1845558-1845678 2.36e-01 7_[+5(9.00e-05)]_105 chr2L:16598496-16598616 3.07e-01 120 chr3R:30265608-30265728 2.82e-01 97_[+5(9.79e-05)]_15 chr3L:15580601-15580721 2.21e-01 120 chr3R:10130174-10130294 1.05e-01 21_[+1(1.64e-05)]_91 chr2R:17437019-17437139 1.16e-01 120 chr3L:8920786-8920906 2.72e-01 120 chr3L:1517619-1517739 3.49e-02 22_[+2(4.30e-05)]_90 chr2R:24146023-24146143 1.98e-02 26_[+3(5.53e-05)]_86 chr3R:22624900-22625020 6.92e-02 27_[+3(5.53e-05)]_85 chr3R:23646324-23646444 7.17e-02 120 chr3L:791504-791624 3.67e-01 120 chr3L:16328416-16328536 8.77e-01 120 chr2R:21076123-21076243 6.37e-02 [+5(1.98e-05)]_112 chr2R:24539270-24539390 8.18e-04 7_[+5(1.98e-05)]_26_[+1(1.64e-05)]_\ 71 chr2L:2957791-2957911 2.14e-02 78_[+4(1.35e-05)]_34 chr3L:3418895-3419015 9.99e-01 120 chr2L:19358100-19358220 7.63e-01 120 chrX:5724784-5724904 3.69e-03 14_[+1(8.13e-06)]_98 chr3R:8652901-8653021 4.78e-01 120 chr2R:11450723-11450843 5.82e-03 120 chr3L:11246247-11246367 1.32e-02 93_[+1(8.13e-06)]_19 chrX:6793520-6793640 3.85e-01 120 chr3L:805820-805940 1.23e-01 65_[+3(5.53e-05)]_47 chr3L:21828268-21828388 1.12e-01 18_[+1(2.94e-05)]_94 chr3R:16448815-16448935 1.26e-01 120 chr2R:24363506-24363626 6.22e-02 70_[+4(3.76e-05)]_42 chr2R:11188638-11188758 2.46e-01 120 chr3L:14339002-14339122 4.75e-01 120 chr3L:16609204-16609324 4.81e-01 120 chr2L:16495330-16495450 9.92e-01 120 chrX:8898276-8898396 9.69e-05 20_[+3(5.53e-05)]_62_[+4(1.35e-05)]_\ 22 chr2R:23745328-23745448 3.60e-01 120 chr3L:15940944-15941064 3.61e-01 120 chr2L:7423556-7423676 2.75e-04 39_[+2(8.85e-05)]_51_[+2(2.05e-06)]_\ 14 chr2R:18302851-18302971 9.96e-01 120 chr2L:4583424-4583544 6.61e-01 120 chr2R:24319509-24319629 6.66e-01 120 chrX:17713932-17714052 3.98e-01 120 chr2R:20623433-20623553 3.23e-01 120 chrX:5322566-5322686 7.12e-01 120 chr2R:8652366-8652486 9.71e-01 120 chr2R:25019763-25019883 2.33e-02 81_[+2(8.85e-05)]_31 chr3R:29802918-29803038 8.95e-02 120 chr2L:7436905-7437025 8.36e-01 120 chr2R:10731176-10731296 7.07e-01 120 chr2R:22569911-22570031 6.90e-01 120 chr2L:11324033-11324153 5.99e-01 120 chr3L:611736-611856 1.00e-01 120 chr2L:6922440-6922560 5.42e-01 120 chr2L:16329226-16329346 1.00e-02 120 chr2R:16007663-16007783 5.80e-02 25_[+1(1.64e-05)]_87 chrX:20173773-20173893 6.34e-01 120 chr3L:12002941-12003061 2.57e-01 120 chr2L:11123701-11123821 2.74e-01 120 chr3L:17621612-17621732 7.48e-01 120 chr2L:10737261-10737381 2.07e-01 120 chr3R:27263610-27263730 8.33e-05 23_[+3(5.53e-05)]_3_[+2(6.21e-05)]_\ 33_[+5(3.94e-05)]_37 chr3L:15105034-15105154 2.33e-01 120 chr3L:3899108-3899228 6.16e-01 120 chr2R:20531428-20531548 5.62e-01 120 chr3R:14692375-14692495 5.21e-01 120 chr3L:11431399-11431519 4.16e-01 120 chrX:3482813-3482933 1.40e-02 22_[+5(1.21e-05)]_90 chr2R:22677045-22677165 6.32e-02 73_[+4(7.14e-05)]_39 chr3R:4215731-4215851 3.14e-04 23_[+2(4.30e-05)]_7_[+2(6.73e-05)]_\ 8_[+1(8.13e-06)]_58 chr2R:9442866-9442986 9.38e-01 120 chr2L:20918091-20918211 4.45e-01 120 chr3L:16105726-16105846 8.75e-01 120 chr2L:18141532-18141652 9.25e-01 120 chr2L:9918546-9918666 1.46e-01 120 chr2R:19805958-19806078 1.20e-01 46_[+1(2.94e-05)]_66 chr3R:4665142-4665262 3.54e-01 120 chr3R:29745193-29745313 7.29e-01 120 chrX:10767521-10767641 2.92e-02 84_[+5(2.76e-05)]_28 chr3L:13513145-13513265 2.90e-01 120 chr2R:10894160-10894280 5.78e-01 120 chr2R:16249970-16250090 6.56e-01 120 chr2R:21576309-21576429 1.26e-02 120 chr3R:23940603-23940723 5.50e-03 49_[+4(5.19e-06)]_63 chr2R:7245678-7245798 8.15e-01 120 chr2L:5476760-5476880 5.41e-01 120 chr2R:14270272-14270392 1.79e-02 120 chr3L:348191-348311 3.50e-01 120 chr3R:25069785-25069905 2.77e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************