******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hnf4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:9378717-9378837 1.0000 120 chr2R:8145530-8145650 1.0000 120 chr2L:3475460-3475580 1.0000 120 chr2R:22740387-22740507 1.0000 120 chr2R:24957444-24957564 1.0000 120 chr2R:6148120-6148240 1.0000 120 chr3L:18998552-18998672 1.0000 120 chr3L:8128771-8128891 1.0000 120 chr3L:16165492-16165612 1.0000 120 chr2R:23522572-23522692 1.0000 120 chr3L:4068551-4068671 1.0000 120 chr2L:5904694-5904814 1.0000 120 chr2R:13409898-13410018 1.0000 120 chr3R:27092341-27092461 1.0000 120 chr2R:17405138-17405258 1.0000 120 chr2L:18843724-18843844 1.0000 120 chr3R:17404295-17404415 1.0000 120 chr3L:14782790-14782910 1.0000 120 chr2R:12384992-12385112 1.0000 120 chr2L:7954737-7954857 1.0000 120 chr3R:5223331-5223451 1.0000 120 chr2L:1117115-1117235 1.0000 120 chr3R:4469040-4469160 1.0000 120 chr3L:4367459-4367579 1.0000 120 chr2R:21389316-21389436 1.0000 120 chrX:20166793-20166913 1.0000 120 chr2R:9839528-9839648 1.0000 120 chr3R:31878406-31878526 1.0000 120 chr3R:10476094-10476214 1.0000 120 chr3R:9969257-9969377 1.0000 120 chrX:13539614-13539734 1.0000 120 chrX:19755111-19755231 1.0000 120 chrM:6982-7102 1.0000 120 chr3L:1866551-1866671 1.0000 120 chr3L:2546180-2546300 1.0000 120 chr2R:6143603-6143723 1.0000 120 chr2L:5505271-5505391 1.0000 120 chr3R:8939844-8939964 1.0000 120 chr2L:2363048-2363168 1.0000 120 chr2L:15407562-15407682 1.0000 120 chrX:13779809-13779929 1.0000 120 chrX:10728205-10728325 1.0000 120 chr2R:24959528-24959648 1.0000 120 chr2R:16720119-16720239 1.0000 120 chrM:13259-13379 1.0000 120 chr2L:8705179-8705299 1.0000 120 chr3R:13955348-13955468 1.0000 120 chr4:1029320-1029440 1.0000 120 chr2L:2875045-2875165 1.0000 120 chr2L:2806313-2806433 1.0000 120 chr3L:20317159-20317279 1.0000 120 chrM:11387-11507 1.0000 120 chr3L:14450645-14450765 1.0000 120 chr2L:8204511-8204631 1.0000 120 chrM:12979-13099 1.0000 120 chr3R:24039327-24039447 1.0000 120 chr3R:9612411-9612531 1.0000 120 chr2L:135839-135959 1.0000 120 chr2R:20306641-20306761 1.0000 120 chr3L:3251993-3252113 1.0000 120 chr3L:6771355-6771475 1.0000 120 chr3R:17595215-17595335 1.0000 120 chrX:263801-263921 1.0000 120 chr3L:11627947-11628067 1.0000 120 chrX:15071201-15071321 1.0000 120 chr2L:3844242-3844362 1.0000 120 chr2L:8126895-8127015 1.0000 120 chr2L:5393435-5393555 1.0000 120 chr3L:11113433-11113553 1.0000 120 chr3R:27929020-27929140 1.0000 120 chrX:2334734-2334854 1.0000 120 chr2L:8744392-8744512 1.0000 120 chr2L:18981644-18981764 1.0000 120 chrX:17814921-17815041 1.0000 120 chr3R:24263071-24263191 1.0000 120 chr3R:29076180-29076300 1.0000 120 chr2R:10473718-10473838 1.0000 120 chrX:2196209-2196329 1.0000 120 chr3L:6809543-6809663 1.0000 120 chr3L:3901934-3902054 1.0000 120 chr3L:3817079-3817199 1.0000 120 chr3R:25493942-25494062 1.0000 120 chrX:8560235-8560355 1.0000 120 chr2R:18529873-18529993 1.0000 120 chr3R:29550101-29550221 1.0000 120 chr2L:12013945-12014065 1.0000 120 chr3L:17918204-17918324 1.0000 120 chrX:14951580-14951700 1.0000 120 chr3R:7542831-7542951 1.0000 120 chr3R:29763977-29764097 1.0000 120 chr3R:31606968-31607088 1.0000 120 chrX:8231727-8231847 1.0000 120 chr2L:11053557-11053677 1.0000 120 chr3L:21502137-21502257 1.0000 120 chr3L:21594586-21594706 1.0000 120 chr2L:8701149-8701269 1.0000 120 chrX:21043260-21043380 1.0000 120 chr2R:9607215-9607335 1.0000 120 chr2L:13845271-13845391 1.0000 120 chr2L:5295161-5295281 1.0000 120 chr3R:29283337-29283457 1.0000 120 chr3R:16240581-16240701 1.0000 120 chr3L:3905134-3905254 1.0000 120 chrX:14014860-14014980 1.0000 120 chr2L:18805799-18805919 1.0000 120 chr3L:4357825-4357945 1.0000 120 chr3R:8142250-8142370 1.0000 120 chr2L:18572200-18572320 1.0000 120 chrX:3473817-3473937 1.0000 120 chr3R:19603110-19603230 1.0000 120 chr2R:6517782-6517902 1.0000 120 chrX:1618151-1618271 1.0000 120 chr2R:9915294-9915414 1.0000 120 chr2R:17090798-17090918 1.0000 120 chrX:6021595-6021715 1.0000 120 chr2L:8198856-8198976 1.0000 120 chrM:5093-5213 1.0000 120 chr2L:18572785-18572905 1.0000 120 chrX:1578384-1578504 1.0000 120 chrM:12080-12200 1.0000 120 chr2L:16889236-16889356 1.0000 120 chrX:1595848-1595968 1.0000 120 chr3L:16189933-16190053 1.0000 120 chr3L:1087470-1087590 1.0000 120 chr3R:22411985-22412105 1.0000 120 chr3R:20765853-20765973 1.0000 120 chr3R:10466453-10466573 1.0000 120 chrX:7558758-7558878 1.0000 120 chr3R:7130985-7131105 1.0000 120 chr2R:8659701-8659821 1.0000 120 chrX:13541345-13541465 1.0000 120 chr2R:21382976-21383096 1.0000 120 chr3R:24152571-24152691 1.0000 120 chrX:1616940-1617060 1.0000 120 chr3R:11614607-11614727 1.0000 120 chr2L:7433438-7433558 1.0000 120 chr2L:8095276-8095396 1.0000 120 chr3R:21599689-21599809 1.0000 120 chr3L:14564543-14564663 1.0000 120 chr2L:6085888-6086008 1.0000 120 chr2L:1668813-1668933 1.0000 120 chr2L:382959-383079 1.0000 120 chr3R:18481214-18481334 1.0000 120 chr2L:2804707-2804827 1.0000 120 chr2L:13289862-13289982 1.0000 120 chr2L:634254-634374 1.0000 120 chr2L:11395801-11395921 1.0000 120 chr2R:11096426-11096546 1.0000 120 chr3L:17947438-17947558 1.0000 120 chrX:8667861-8667981 1.0000 120 chr3L:6446702-6446822 1.0000 120 chr2L:11328488-11328608 1.0000 120 chrX:11442207-11442327 1.0000 120 chr2R:9836867-9836987 1.0000 120 chrX:13644755-13644875 1.0000 120 chr3L:5633665-5633785 1.0000 120 chr2R:8671242-8671362 1.0000 120 chr2R:25007988-25008108 1.0000 120 chr3L:21894904-21895024 1.0000 120 chr3L:14789802-14789922 1.0000 120 chr3L:16159915-16160035 1.0000 120 chrX:14953147-14953267 1.0000 120 chr3R:31956394-31956514 1.0000 120 chrX:17172290-17172410 1.0000 120 chrX:5988249-5988369 1.0000 120 chr2L:7422501-7422621 1.0000 120 chr3L:16191008-16191128 1.0000 120 chrX:14805894-14806014 1.0000 120 chr2R:6144330-6144450 1.0000 120 chr3R:14481596-14481716 1.0000 120 chr2R:10474671-10474791 1.0000 120 chr3R:11859730-11859850 1.0000 120 chr2R:22197234-22197354 1.0000 120 chr2L:16526798-16526918 1.0000 120 chr2L:18823527-18823647 1.0000 120 chrX:15857719-15857839 1.0000 120 chr3L:137015-137135 1.0000 120 chrX:3720647-3720767 1.0000 120 chr3L:16670350-16670470 1.0000 120 chr3L:15637787-15637907 1.0000 120 chr3L:2573089-2573209 1.0000 120 chr3R:11689984-11690104 1.0000 120 chr3R:18398566-18398686 1.0000 120 chr2R:9098462-9098582 1.0000 120 chr3L:11711401-11711521 1.0000 120 chr2L:11061342-11061462 1.0000 120 chr2R:9691851-9691971 1.0000 120 chr3R:19283683-19283803 1.0000 120 chr2L:650995-651115 1.0000 120 chr3L:16041302-16041422 1.0000 120 chrX:20509637-20509757 1.0000 120 chr2L:9438442-9438562 1.0000 120 chr2R:17420061-17420181 1.0000 120 chr3L:1336438-1336558 1.0000 120 chr2L:18003155-18003275 1.0000 120 chrM:5357-5477 1.0000 120 chr3L:761836-761956 1.0000 120 chr3L:22074481-22074601 1.0000 120 chr3R:26588205-26588325 1.0000 120 chrM:3588-3708 1.0000 120 chr3R:5281303-5281423 1.0000 120 chr3L:7719439-7719559 1.0000 120 chrM:2806-2926 1.0000 120 chr3R:29835495-29835615 1.0000 120 chr2R:11690776-11690896 1.0000 120 chr3R:8349890-8350010 1.0000 120 chr2R:19913818-19913938 1.0000 120 chr2R:18180175-18180295 1.0000 120 chr2L:4224219-4224339 1.0000 120 chr2L:3554079-3554199 1.0000 120 chr3L:2833832-2833952 1.0000 120 chr2L:7323125-7323245 1.0000 120 chr3R:22025474-22025594 1.0000 120 chr2L:13082325-13082445 1.0000 120 chr3R:9628777-9628897 1.0000 120 chrM:1827-1947 1.0000 120 chr3R:19153796-19153916 1.0000 120 chr3L:3251216-3251336 1.0000 120 chrM:7261-7381 1.0000 120 chr2L:8009419-8009539 1.0000 120 chrX:11684589-11684709 1.0000 120 chrM:10704-10824 1.0000 120 chrX:12890401-12890521 1.0000 120 chr3L:8338976-8339096 1.0000 120 chr2L:8423970-8424090 1.0000 120 chr3R:10045454-10045574 1.0000 120 chr2R:19467193-19467313 1.0000 120 chrX:19605181-19605301 1.0000 120 chr3R:10125557-10125677 1.0000 120 chr3L:1321315-1321435 1.0000 120 chr3R:15963783-15963903 1.0000 120 chr2L:3341743-3341863 1.0000 120 chrX:5897176-5897296 1.0000 120 chr3R:29621000-29621120 1.0000 120 chr2L:18678517-18678637 1.0000 120 chr2L:18708025-18708145 1.0000 120 chr4:697596-697716 1.0000 120 chrX:18091326-18091446 1.0000 120 chrX:4113812-4113932 1.0000 120 chr2L:7926539-7926659 1.0000 120 chr3L:539935-540055 1.0000 120 chr2L:5972107-5972227 1.0000 120 chr2L:5242637-5242757 1.0000 120 chr2R:10052208-10052328 1.0000 120 chr2R:18800444-18800564 1.0000 120 chrX:3718711-3718831 1.0000 120 chr3R:10133040-10133160 1.0000 120 chr3L:5365301-5365421 1.0000 120 chr3R:13372094-13372214 1.0000 120 chrX:11349867-11349987 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Hnf4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hnf4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.293 C 0.207 G 0.199 T 0.301 Background letter frequencies (from file dataset with add-one prior applied): A 0.293 C 0.207 G 0.199 T 0.301 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAAAGTCC MEME-1 width = 8 sites = 29 llr = 275 E-value = 1.6e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :aaa:::1 pos.-specific C 9:::1:89 probability G ::::9:1: matrix T 1::::a1: bits 2.3 2.1 1.9 **** * 1.6 ****** * Relative 1.4 ****** * Entropy 1.2 ******** (13.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAAAGTCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12890401-12890521 47 1.34e-05 CGCTGGCGGG CAAAGTCC ACCAAGTGAT chr3L:16041302-16041422 23 1.34e-05 CCCGACTGTT CAAAGTCC ATTTCAACCA chr2R:10474671-10474791 113 1.34e-05 CACGAGGGGC CAAAGTCC chr2R:25007988-25008108 102 1.34e-05 TGGTCGCAAA CAAAGTCC AAAGTGGTTT chr2L:18572785-18572905 78 1.34e-05 CTAACGGGTG CAAAGTCC ATTACCAAGA chr3R:31606968-31607088 39 1.34e-05 AGTCGTAGTT CAAAGTCC CAAAATAACA chr3L:3817079-3817199 46 1.34e-05 GGCCAGAGGG CAAAGTCC ACGTTCATCT chrX:2334734-2334854 77 1.34e-05 TCTCTGGAAG CAAAGTCC AGTGTCTTGC chr2L:15407562-15407682 9 1.34e-05 CAGGCTTC CAAAGTCC ACTTATTGGA chrX:20166793-20166913 88 1.34e-05 GGGTTCGGTT CAAAGTCC GAACACCGGT chr3L:16165492-16165612 32 1.34e-05 AGCCGCCGTG CAAAGTCC AAGAAATTAA chr2R:6148120-6148240 37 1.34e-05 GGTCCGATGC CAAAGTCC GCCAgaccct chr2R:8145530-8145650 25 1.34e-05 GAGTCACGAT CAAAGTCC AGGGAATTTT chr3R:9378717-9378837 50 1.34e-05 TCACCCCAAC CAAAGTCC AGATTCGGGC chr2R:19913818-19913938 58 3.28e-05 TAGAAGACCA CAAAGTTC AACTGTTCAG chr3L:7719439-7719559 93 3.28e-05 TCCAAAGGTC CAAAGTTC TATCACGCTA chr3R:29763977-29764097 102 3.28e-05 GTAACCGGCC CAAAGTTC ATTCCGCTCT chr2L:5393435-5393555 76 3.28e-05 TATAATAGTA CAAAGTTC TACACTTATT chr3R:11689984-11690104 53 6.61e-05 GCTAGATGGC TAAAGTCC GTCACATGCG chrX:14953147-14953267 81 6.61e-05 GGGACCAAAA CAAACTCC AAAATGTTTA chr3R:24263071-24263191 38 6.61e-05 AACTGCAGGC CAAACTCC TCAATAGGTT chr2L:135839-135959 50 6.61e-05 TTCACTCGGT TAAAGTCC AAGCAAACTG chr3L:2546180-2546300 11 6.61e-05 TCGAAGCTCC CAAACTCC CCCTTCTTGT chr3L:1866551-1866671 79 6.61e-05 ATAAGGGTCT TAAAGTCC ACATTCAACA chr3R:9969257-9969377 45 6.61e-05 CATCTCCCTC TAAAGTCC ACATATGCCC chr3R:18481214-18481334 106 7.90e-05 AAGTGGCTCT CAAAGTGC TGTCGCT chr2R:20306641-20306761 32 7.90e-05 AGAAATCGGG CAAAGTGC GCCGGCTGAT chrX:11442207-11442327 57 9.79e-05 AAAATAAAAG CAAAGTCA TAACAACTGG chr2L:11053557-11053677 107 9.79e-05 CGGAGCCGGT CAAAGTCA AGTCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12890401-12890521 1.3e-05 46_[+1]_66 chr3L:16041302-16041422 1.3e-05 22_[+1]_90 chr2R:10474671-10474791 1.3e-05 112_[+1] chr2R:25007988-25008108 1.3e-05 101_[+1]_11 chr2L:18572785-18572905 1.3e-05 77_[+1]_35 chr3R:31606968-31607088 1.3e-05 38_[+1]_74 chr3L:3817079-3817199 1.3e-05 45_[+1]_67 chrX:2334734-2334854 1.3e-05 76_[+1]_36 chr2L:15407562-15407682 1.3e-05 8_[+1]_104 chrX:20166793-20166913 1.3e-05 87_[+1]_25 chr3L:16165492-16165612 1.3e-05 31_[+1]_81 chr2R:6148120-6148240 1.3e-05 36_[+1]_76 chr2R:8145530-8145650 1.3e-05 24_[+1]_88 chr3R:9378717-9378837 1.3e-05 49_[+1]_63 chr2R:19913818-19913938 3.3e-05 57_[+1]_55 chr3L:7719439-7719559 3.3e-05 92_[+1]_20 chr3R:29763977-29764097 3.3e-05 101_[+1]_11 chr2L:5393435-5393555 3.3e-05 75_[+1]_37 chr3R:11689984-11690104 6.6e-05 52_[+1]_60 chrX:14953147-14953267 6.6e-05 80_[+1]_32 chr3R:24263071-24263191 6.6e-05 37_[+1]_75 chr2L:135839-135959 6.6e-05 49_[+1]_63 chr3L:2546180-2546300 6.6e-05 10_[+1]_102 chr3L:1866551-1866671 6.6e-05 78_[+1]_34 chr3R:9969257-9969377 6.6e-05 44_[+1]_68 chr3R:18481214-18481334 7.9e-05 105_[+1]_7 chr2R:20306641-20306761 7.9e-05 31_[+1]_81 chrX:11442207-11442327 9.8e-05 56_[+1]_56 chr2L:11053557-11053677 9.8e-05 106_[+1]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAAGTCC width=8 seqs=29 chrX:12890401-12890521 ( 47) CAAAGTCC 1 chr3L:16041302-16041422 ( 23) CAAAGTCC 1 chr2R:10474671-10474791 ( 113) CAAAGTCC 1 chr2R:25007988-25008108 ( 102) CAAAGTCC 1 chr2L:18572785-18572905 ( 78) CAAAGTCC 1 chr3R:31606968-31607088 ( 39) CAAAGTCC 1 chr3L:3817079-3817199 ( 46) CAAAGTCC 1 chrX:2334734-2334854 ( 77) CAAAGTCC 1 chr2L:15407562-15407682 ( 9) CAAAGTCC 1 chrX:20166793-20166913 ( 88) CAAAGTCC 1 chr3L:16165492-16165612 ( 32) CAAAGTCC 1 chr2R:6148120-6148240 ( 37) CAAAGTCC 1 chr2R:8145530-8145650 ( 25) CAAAGTCC 1 chr3R:9378717-9378837 ( 50) CAAAGTCC 1 chr2R:19913818-19913938 ( 58) CAAAGTTC 1 chr3L:7719439-7719559 ( 93) CAAAGTTC 1 chr3R:29763977-29764097 ( 102) CAAAGTTC 1 chr2L:5393435-5393555 ( 76) CAAAGTTC 1 chr3R:11689984-11690104 ( 53) TAAAGTCC 1 chrX:14953147-14953267 ( 81) CAAACTCC 1 chr3R:24263071-24263191 ( 38) CAAACTCC 1 chr2L:135839-135959 ( 50) TAAAGTCC 1 chr3L:2546180-2546300 ( 11) CAAACTCC 1 chr3L:1866551-1866671 ( 79) TAAAGTCC 1 chr3R:9969257-9969377 ( 45) TAAAGTCC 1 chr3R:18481214-18481334 ( 106) CAAAGTGC 1 chr2R:20306641-20306761 ( 32) CAAAGTGC 1 chrX:11442207-11442327 ( 57) CAAAGTCA 1 chr2L:11053557-11053677 ( 107) CAAAGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5678 E= 1.6e-007 -1150 206 -1150 -113 177 -1150 -1150 -1150 177 -1150 -1150 -1150 177 -1150 -1150 -1150 -1150 -100 217 -1150 -1150 -1150 -1150 173 -1150 194 -153 -113 -209 217 -1150 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 1.6e-007 0.000000 0.862069 0.000000 0.137931 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.103448 0.896552 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.793103 0.068966 0.137931 0.068966 0.931034 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-1 regular expression -------------------------------------------------------------------------------- CAAAGTCC -------------------------------------------------------------------------------- Time 7.54 secs. ******************************************************************************** ******************************************************************************** MOTIF GVACTTTG MEME-2 width = 8 sites = 20 llr = 194 E-value = 5.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GVACTTTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :4a::::: pos.-specific C :3:a:::: probability G a4:::1:a matrix T ::::a9a: bits 2.3 * * * 2.1 * * * 1.9 * ** * 1.6 * *** ** Relative 1.4 * ****** Entropy 1.2 * ****** (14.0 bits) 0.9 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAACTTTG consensus G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVACTTTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16191008-16191128 46 1.30e-05 TATGACGACG GGACTTTG TTCCCTATCT chrX:13644755-13644875 48 1.30e-05 CTTGTCGCTT GGACTTTG AACCGCGCCG chr2R:18529873-18529993 91 1.30e-05 TCCACTCTGT GGACTTTG ATATGCGGTA chr3R:25493942-25494062 58 1.30e-05 AAGACTAAGT GGACTTTG GAACTGGTTA chr2L:8204511-8204631 85 1.30e-05 CCCTGGACTT GGACTTTG TAACCCAAAT chr3R:8939844-8939964 64 1.30e-05 TGTGCGTTTT GGACTTTG CCTGAACTTA chr2R:24957444-24957564 15 1.30e-05 TCGAGTTTTT GGACTTTG TACCAGAGGC chr3L:16189933-16190053 86 2.66e-05 gtCTGCCGCT GCACTTTG GATCGCTTTT chr2L:8701149-8701269 105 2.66e-05 CACTCACGGT GCACTTTG GATTCGAA chr2R:24959528-24959648 79 2.66e-05 GATCTAGAAT GCACTTTG TTTCAAAAGT chr2R:21389316-21389436 35 2.66e-05 GCTGTCTTGT GCACTTTG CCCCCCCAAA chr2R:18800444-18800564 15 4.58e-05 CAAACTGACC GAACTTTG AGCTCTCTCT chrX:14953147-14953267 22 4.58e-05 GTTTTGTGTT GAACTTTG GACCCTGGCT chr2L:2804707-2804827 11 4.58e-05 GACTGCCGCT GAACTTTG GACCGGTTGG chr2R:17090798-17090918 13 4.58e-05 TCGCGCTGTT GAACTTTG CATATTTGAT chr3L:21502137-21502257 73 4.58e-05 TCAACGCACT GAACTTTG GACAACGCTG chr3L:11627947-11628067 3 4.58e-05 TC GAACTTTG GAATTGATAT chr2L:2875045-2875165 49 4.58e-05 TTCAGAACTC GAACTTTG GCACCACAGC chr2R:21382976-21383096 60 6.34e-05 GATGTCGCCG GCACTGTG GCTTCTCCGT chr3R:9969257-9969377 26 6.34e-05 CTTTCGCTCG GCACTGTG TCATCTCCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVACTTTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16191008-16191128 1.3e-05 45_[+2]_67 chrX:13644755-13644875 1.3e-05 47_[+2]_65 chr2R:18529873-18529993 1.3e-05 90_[+2]_22 chr3R:25493942-25494062 1.3e-05 57_[+2]_55 chr2L:8204511-8204631 1.3e-05 84_[+2]_28 chr3R:8939844-8939964 1.3e-05 63_[+2]_49 chr2R:24957444-24957564 1.3e-05 14_[+2]_98 chr3L:16189933-16190053 2.7e-05 85_[+2]_27 chr2L:8701149-8701269 2.7e-05 104_[+2]_8 chr2R:24959528-24959648 2.7e-05 78_[+2]_34 chr2R:21389316-21389436 2.7e-05 34_[+2]_78 chr2R:18800444-18800564 4.6e-05 14_[+2]_98 chrX:14953147-14953267 4.6e-05 21_[+2]_91 chr2L:2804707-2804827 4.6e-05 10_[+2]_102 chr2R:17090798-17090918 4.6e-05 12_[+2]_100 chr3L:21502137-21502257 4.6e-05 72_[+2]_40 chr3L:11627947-11628067 4.6e-05 2_[+2]_110 chr2L:2875045-2875165 4.6e-05 48_[+2]_64 chr2R:21382976-21383096 6.3e-05 59_[+2]_53 chr3R:9969257-9969377 6.3e-05 25_[+2]_87 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVACTTTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GVACTTTG width=8 seqs=20 chr3L:16191008-16191128 ( 46) GGACTTTG 1 chrX:13644755-13644875 ( 48) GGACTTTG 1 chr2R:18529873-18529993 ( 91) GGACTTTG 1 chr3R:25493942-25494062 ( 58) GGACTTTG 1 chr2L:8204511-8204631 ( 85) GGACTTTG 1 chr3R:8939844-8939964 ( 64) GGACTTTG 1 chr2R:24957444-24957564 ( 15) GGACTTTG 1 chr3L:16189933-16190053 ( 86) GCACTTTG 1 chr2L:8701149-8701269 ( 105) GCACTTTG 1 chr2R:24959528-24959648 ( 79) GCACTTTG 1 chr2R:21389316-21389436 ( 35) GCACTTTG 1 chr2R:18800444-18800564 ( 15) GAACTTTG 1 chrX:14953147-14953267 ( 22) GAACTTTG 1 chr2L:2804707-2804827 ( 11) GAACTTTG 1 chr2R:17090798-17090918 ( 13) GAACTTTG 1 chr3L:21502137-21502257 ( 73) GAACTTTG 1 chr3L:11627947-11628067 ( 3) GAACTTTG 1 chr2L:2875045-2875165 ( 49) GAACTTTG 1 chr2R:21382976-21383096 ( 60) GCACTGTG 1 chr3R:9969257-9969377 ( 26) GCACTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVACTTTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.89693 E= 5.0e+000 -1097 -1097 233 -1097 26 54 81 -1097 177 -1097 -1097 -1097 -1097 227 -1097 -1097 -1097 -1097 -1097 173 -1097 -1097 -99 158 -1097 -1097 -1097 173 -1097 -1097 233 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVACTTTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 5.0e+000 0.000000 0.000000 1.000000 0.000000 0.350000 0.300000 0.350000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVACTTTG MEME-2 regular expression -------------------------------------------------------------------------------- G[AGC]ACTTTG -------------------------------------------------------------------------------- Time 13.94 secs. ******************************************************************************** ******************************************************************************** MOTIF GCRGCDGM MEME-3 width = 8 sites = 30 llr = 263 E-value = 3.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCRGCDGM MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::7::4:3 pos.-specific C :a::9::5 probability G a:3a14a1 matrix T :::::2:2 bits 2.3 ** * * 2.1 ** * * 1.9 ** ** * 1.6 ** ** * Relative 1.4 ** ** * Entropy 1.2 ** ** * (12.6 bits) 0.9 ***** * 0.7 ***** * 0.5 ***** * 0.2 ******** 0.0 -------- Multilevel GCAGCAGC consensus G G A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGCDGM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:539935-540055 100 4.08e-06 ATACACATAT GCAGCGGC ACATACACAC chr3L:21894904-21895024 34 4.08e-06 AAACCCGAca gcagcggc agcagcagca chr2R:13409898-13410018 1 4.08e-06 . GCAGCGGC GATCTTTTAG chrX:11684589-11684709 3 6.84e-06 CG GCGGCGGC AGCCATGCCG chrX:1618151-1618271 35 6.84e-06 GTTCATTAGA GCGGCGGC GGGCCAATAA chr3L:4357825-4357945 20 1.28e-05 ATCACCACCA GCAGCAGC AGTTACAAAT chr2L:8204511-8204631 60 1.28e-05 ATCTCGAGCA GCAGCAGC ATTATCGCCC chrX:3718711-3718831 72 1.69e-05 gcaggagaga gcggcagc gagagcgaga chrM:5357-5477 90 2.31e-05 TGGTTTTGAA GCAGCTGC ATGATATTGA chr2L:16889236-16889356 38 2.89e-05 GTCAAAGGGA GCAGCGGA AAGCTTATCA chr2L:2875045-2875165 110 2.89e-05 TGAATGCCCA GCAGcgga ttt chr3L:16189933-16190053 34 3.30e-05 gactgcgact gcggctgc ttttctgtct chrX:8560235-8560355 7 3.70e-05 TGATTA GCGGCGGA ACTGTACAGT chr3R:10133040-10133160 108 4.55e-05 AACGCGAAGA GCAGCAGA GAAAA chr2R:22740387-22740507 80 4.55e-05 ACTGAAATTG GCAGCAGA AATTAGACTT chr3R:25493942-25494062 93 5.53e-05 AGGGGATTGT GCAGCGGG CGGTAATCGT chrX:1578384-1578504 66 6.11e-05 CCAAGGCAGA GCGGCAGA GGATCAGCAG chr2R:9098462-9098582 42 8.52e-05 TGCACCTTAT GCAGCAGT GACCAACACT chr2R:8671242-8671362 67 8.52e-05 TCGGGGGAGC GCAGCAGT CGACGGTACC chr3L:21594586-21594706 104 8.52e-05 CAAAAGCTGG GCAGCAGT AGAGGACAG chrX:8231727-8231847 28 8.52e-05 CCTACAGCAG GCAGCTGA AAAATTTTAA chr2L:8705179-8705299 74 8.52e-05 TTATCAGGGG GCAGCTGA CGTAGACCCC chr2L:7422501-7422621 43 1.11e-04 CAGTCAGTCG GCGGCAGG GAGGCGAGCG chr3R:15963783-15963903 49 1.20e-04 AATTAGGCAA GCAGCTGT TGAGTTCGAT chrX:5988249-5988369 29 1.28e-04 CCAACAAAGA GCAGCTGG TGTACTTTGC chr2R:25007988-25008108 66 1.28e-04 ACGCCAAAGG GCGGGGGC GCGGAAGCGG chr3L:4068551-4068671 51 1.28e-04 TGTCTACGTT GCGGGGGC TGGGGGGATC chr2L:8423970-8424090 74 1.38e-04 GCAGAAGAAT GCAGGAGC CAGCAAAGTG chrX:8667861-8667981 30 1.38e-04 ATTTATGCTT GCAGCCGC ATAACAATCT chr2L:2806313-2806433 85 1.44e-04 TCTCCATCAA GCGGCTGT ACTTTGCACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGCDGM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:539935-540055 4.1e-06 99_[+3]_13 chr3L:21894904-21895024 4.1e-06 33_[+3]_79 chr2R:13409898-13410018 4.1e-06 [+3]_112 chrX:11684589-11684709 6.8e-06 2_[+3]_110 chrX:1618151-1618271 6.8e-06 34_[+3]_78 chr3L:4357825-4357945 1.3e-05 19_[+3]_93 chr2L:8204511-8204631 1.3e-05 59_[+3]_53 chrX:3718711-3718831 1.7e-05 71_[+3]_41 chrM:5357-5477 2.3e-05 89_[+3]_23 chr2L:16889236-16889356 2.9e-05 37_[+3]_75 chr2L:2875045-2875165 2.9e-05 109_[+3]_3 chr3L:16189933-16190053 3.3e-05 33_[+3]_79 chrX:8560235-8560355 3.7e-05 6_[+3]_106 chr3R:10133040-10133160 4.5e-05 107_[+3]_5 chr2R:22740387-22740507 4.5e-05 79_[+3]_33 chr3R:25493942-25494062 5.5e-05 92_[+3]_20 chrX:1578384-1578504 6.1e-05 65_[+3]_47 chr2R:9098462-9098582 8.5e-05 41_[+3]_71 chr2R:8671242-8671362 8.5e-05 66_[+3]_46 chr3L:21594586-21594706 8.5e-05 103_[+3]_9 chrX:8231727-8231847 8.5e-05 27_[+3]_85 chr2L:8705179-8705299 8.5e-05 73_[+3]_39 chr2L:7422501-7422621 0.00011 42_[+3]_70 chr3R:15963783-15963903 0.00012 48_[+3]_64 chrX:5988249-5988369 0.00013 28_[+3]_84 chr2R:25007988-25008108 0.00013 65_[+3]_47 chr3L:4068551-4068671 0.00013 50_[+3]_62 chr2L:8423970-8424090 0.00014 73_[+3]_39 chrX:8667861-8667981 0.00014 29_[+3]_83 chr2L:2806313-2806433 0.00014 84_[+3]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGCDGM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCRGCDGM width=8 seqs=30 chr3L:539935-540055 ( 100) GCAGCGGC 1 chr3L:21894904-21895024 ( 34) GCAGCGGC 1 chr2R:13409898-13410018 ( 1) GCAGCGGC 1 chrX:11684589-11684709 ( 3) GCGGCGGC 1 chrX:1618151-1618271 ( 35) GCGGCGGC 1 chr3L:4357825-4357945 ( 20) GCAGCAGC 1 chr2L:8204511-8204631 ( 60) GCAGCAGC 1 chrX:3718711-3718831 ( 72) GCGGCAGC 1 chrM:5357-5477 ( 90) GCAGCTGC 1 chr2L:16889236-16889356 ( 38) GCAGCGGA 1 chr2L:2875045-2875165 ( 110) GCAGCGGA 1 chr3L:16189933-16190053 ( 34) GCGGCTGC 1 chrX:8560235-8560355 ( 7) GCGGCGGA 1 chr3R:10133040-10133160 ( 108) GCAGCAGA 1 chr2R:22740387-22740507 ( 80) GCAGCAGA 1 chr3R:25493942-25494062 ( 93) GCAGCGGG 1 chrX:1578384-1578504 ( 66) GCGGCAGA 1 chr2R:9098462-9098582 ( 42) GCAGCAGT 1 chr2R:8671242-8671362 ( 67) GCAGCAGT 1 chr3L:21594586-21594706 ( 104) GCAGCAGT 1 chrX:8231727-8231847 ( 28) GCAGCTGA 1 chr2L:8705179-8705299 ( 74) GCAGCTGA 1 chr2L:7422501-7422621 ( 43) GCGGCAGG 1 chr3R:15963783-15963903 ( 49) GCAGCTGT 1 chrX:5988249-5988369 ( 29) GCAGCTGG 1 chr2R:25007988-25008108 ( 66) GCGGGGGC 1 chr3L:4068551-4068671 ( 51) GCGGGGGC 1 chr2L:8423970-8424090 ( 74) GCAGGAGC 1 chrX:8667861-8667981 ( 30) GCAGCCGC 1 chr2L:2806313-2806433 ( 85) GCGGCTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGCDGM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 3.2e+001 -1155 -1155 233 -1155 -1155 227 -1155 -1155 119 -1155 74 -1155 -1155 -1155 233 -1155 -1155 212 -99 -1155 32 -263 88 -37 -1155 -1155 233 -1155 -14 117 -99 -85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGCDGM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 3.2e+001 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.366667 0.033333 0.366667 0.233333 0.000000 0.000000 1.000000 0.000000 0.266667 0.466667 0.100000 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGCDGM MEME-3 regular expression -------------------------------------------------------------------------------- GC[AG]GC[AGT]G[CA] -------------------------------------------------------------------------------- Time 20.25 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGAGCT MEME-4 width = 8 sites = 6 llr = 70 E-value = 4.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGAGCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C ::::::a: probability G a:aa:a:: matrix T :a:::::a bits 2.3 * ** ** 2.1 * ** ** 1.9 * ***** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (16.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGGAGCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGAGCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrM:1827-1947 56 8.62e-06 ATTGCTCATG GTGGAGCT TCAGTTGATT chrM:3588-3708 93 8.62e-06 TCAGAAATCT GTGGAGCT AATCATAGAT chr3R:29283337-29283457 83 8.62e-06 CCAGATGATA GTGGAGCT ATCGCAAAAA chr2L:11053557-11053677 69 8.62e-06 GCCATATTTG GTGGAGCT GGAGGAGCCG chr2R:21389316-21389436 98 8.62e-06 CAGTAGTCGC GTGGAGCT CACAGCTGTT chr3L:16165492-16165612 74 8.62e-06 GGTCGGGGTG GTGGAGCT GCGGGGGTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGAGCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:1827-1947 8.6e-06 55_[+4]_57 chrM:3588-3708 8.6e-06 92_[+4]_20 chr3R:29283337-29283457 8.6e-06 82_[+4]_30 chr2L:11053557-11053677 8.6e-06 68_[+4]_44 chr2R:21389316-21389436 8.6e-06 97_[+4]_15 chr3L:16165492-16165612 8.6e-06 73_[+4]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGAGCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGAGCT width=8 seqs=6 chrM:1827-1947 ( 56) GTGGAGCT 1 chrM:3588-3708 ( 93) GTGGAGCT 1 chr3R:29283337-29283457 ( 83) GTGGAGCT 1 chr2L:11053557-11053677 ( 69) GTGGAGCT 1 chr2R:21389316-21389436 ( 98) GTGGAGCT 1 chr3L:16165492-16165612 ( 74) GTGGAGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGAGCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8596 E= 4.1e+003 -923 -923 233 -923 -923 -923 -923 173 -923 -923 233 -923 -923 -923 233 -923 177 -923 -923 -923 -923 -923 233 -923 -923 227 -923 -923 -923 -923 -923 173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGAGCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.1e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGAGCT MEME-4 regular expression -------------------------------------------------------------------------------- GTGGAGCT -------------------------------------------------------------------------------- Time 26.47 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGAGGG MEME-5 width = 8 sites = 2 llr = 25 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C :::::::: probability G aaaa:aaa matrix T :::::::: bits 2.3 **** *** 2.1 **** *** 1.9 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGAGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17090798-17090918 113 3.62e-06 TCAGAAGTTC GGGGAGGG chrX:1618151-1618271 88 3.62e-06 GCGCTGGGCG GGGGAGGG GTTTGGTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17090798-17090918 3.6e-06 112_[+5] chrX:1618151-1618271 3.6e-06 87_[+5]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGAGGG width=8 seqs=2 chr2R:17090798-17090918 ( 113) GGGGAGGG 1 chrX:1618151-1618271 ( 88) GGGGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.5e+004 -765 -765 232 -765 -765 -765 232 -765 -765 -765 232 -765 -765 -765 232 -765 177 -765 -765 -765 -765 -765 232 -765 -765 -765 232 -765 -765 -765 232 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.5e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-5 regular expression -------------------------------------------------------------------------------- GGGGAGGG -------------------------------------------------------------------------------- Time 32.79 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:9378717-9378837 1.16e-02 49_[+1(1.34e-05)]_63 chr2R:8145530-8145650 5.38e-02 24_[+1(1.34e-05)]_88 chr2L:3475460-3475580 2.78e-01 120 chr2R:22740387-22740507 4.85e-02 79_[+3(4.55e-05)]_33 chr2R:24957444-24957564 7.74e-02 14_[+2(1.30e-05)]_98 chr2R:6148120-6148240 2.55e-02 36_[+1(1.34e-05)]_76 chr3L:18998552-18998672 5.23e-02 120 chr3L:8128771-8128891 9.96e-01 120 chr3L:16165492-16165612 6.68e-06 31_[+1(1.34e-05)]_34_[+4(8.62e-06)]_\ 39 chr2R:23522572-23522692 1.89e-01 120 chr3L:4068551-4068671 1.16e-02 120 chr2L:5904694-5904814 5.66e-01 120 chr2R:13409898-13410018 4.27e-03 [+3(4.08e-06)]_112 chr3R:27092341-27092461 8.43e-01 120 chr2R:17405138-17405258 1.58e-01 120 chr2L:18843724-18843844 9.82e-01 120 chr3R:17404295-17404415 9.05e-01 120 chr3L:14782790-14782910 5.20e-01 120 chr2R:12384992-12385112 4.33e-01 120 chr2L:7954737-7954857 9.50e-01 120 chr3R:5223331-5223451 2.67e-01 120 chr2L:1117115-1117235 8.33e-02 120 chr3R:4469040-4469160 4.96e-01 120 chr3L:4367459-4367579 1.02e-01 120 chr2R:21389316-21389436 1.42e-03 34_[+2(2.66e-05)]_55_[+4(8.62e-06)]_\ 15 chrX:20166793-20166913 8.17e-03 87_[+1(1.34e-05)]_25 chr2R:9839528-9839648 4.93e-02 120 chr3R:31878406-31878526 3.58e-01 120 chr3R:10476094-10476214 9.28e-01 120 chr3R:9969257-9969377 1.30e-02 25_[+2(6.34e-05)]_11_[+1(6.61e-05)]_\ 68 chrX:13539614-13539734 9.98e-01 120 chrX:19755111-19755231 2.52e-02 120 chrM:6982-7102 9.98e-01 120 chr3L:1866551-1866671 3.80e-02 78_[+1(6.61e-05)]_34 chr3L:2546180-2546300 2.06e-01 10_[+1(6.61e-05)]_102 chr2R:6143603-6143723 6.82e-01 120 chr2L:5505271-5505391 9.35e-01 120 chr3R:8939844-8939964 4.20e-02 63_[+2(1.30e-05)]_49 chr2L:2363048-2363168 2.45e-01 120 chr2L:15407562-15407682 1.95e-01 8_[+1(1.34e-05)]_104 chrX:13779809-13779929 1.00e+00 120 chrX:10728205-10728325 5.03e-01 120 chr2R:24959528-24959648 5.92e-02 78_[+2(2.66e-05)]_34 chr2R:16720119-16720239 2.20e-01 120 chrM:13259-13379 4.17e-01 120 chr2L:8705179-8705299 3.81e-02 73_[+3(8.52e-05)]_39 chr3R:13955348-13955468 6.22e-01 120 chr4:1029320-1029440 2.88e-01 120 chr2L:2875045-2875165 8.88e-03 48_[+2(4.58e-05)]_53_[+3(2.89e-05)]_\ 3 chr2L:2806313-2806433 1.01e-02 90_[+2(9.58e-05)]_22 chr3L:20317159-20317279 2.80e-02 120 chrM:11387-11507 9.92e-01 120 chr3L:14450645-14450765 4.21e-01 120 chr2L:8204511-8204631 1.28e-03 56_[+3(1.28e-05)]_20_[+2(1.30e-05)]_\ 28 chrM:12979-13099 9.94e-01 120 chr3R:24039327-24039447 2.85e-01 120 chr3R:9612411-9612531 5.98e-01 120 chr2L:135839-135959 1.55e-01 49_[+1(6.61e-05)]_63 chr2R:20306641-20306761 4.33e-02 31_[+1(7.90e-05)]_81 chr3L:3251993-3252113 9.84e-01 120 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******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************