******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hmx.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:2124-2244 1.0000 120 chrM:5075-5195 1.0000 120 chrM:10958-11078 1.0000 120 chrM:1597-1717 1.0000 120 chrM:2716-2836 1.0000 120 chrM:7341-7461 1.0000 120 chrM:3487-3607 1.0000 120 chrM:5274-5394 1.0000 120 chrM:1804-1924 1.0000 120 chrM:8622-8742 1.0000 120 chrM:8824-8944 1.0000 120 chrM:10754-10874 1.0000 120 chr3L:20396063-20396183 1.0000 120 chr3L:7855297-7855417 1.0000 120 chr3L:20823395-20823515 1.0000 120 chrX:8294411-8294531 1.0000 120 chr2L:15062144-15062264 1.0000 120 chr2L:12416007-12416127 1.0000 120 chr3L:17948733-17948853 1.0000 120 chr2L:22281809-22281929 1.0000 120 chrX:15803834-15803954 1.0000 120 chr3R:14721074-14721194 1.0000 120 chr3L:259081-259201 1.0000 120 chr3R:18914375-18914495 1.0000 120 chr2L:6921892-6922012 1.0000 120 chr3R:25056269-25056389 1.0000 120 chrX:3399533-3399653 1.0000 120 chr3L:4413245-4413365 1.0000 120 chr3L:12409060-12409180 1.0000 120 chr3R:21856522-21856642 1.0000 120 chr3R:16996146-16996266 1.0000 120 chr2R:14907742-14907862 1.0000 120 chr2R:13438155-13438275 1.0000 120 chr3L:21604706-21604826 1.0000 120 chr2L:8115946-8116066 1.0000 120 chr3R:21359909-21360029 1.0000 120 chr3R:23941641-23941761 1.0000 120 chrX:7703105-7703225 1.0000 120 chr3R:16241886-16242006 1.0000 120 chr2R:1522919-1523039 1.0000 120 chr3L:20393779-20393899 1.0000 120 chr2R:6991331-6991451 1.0000 120 chr2L:10232844-10232964 1.0000 120 chr3R:20310979-20311099 1.0000 120 chr3L:20187659-20187779 1.0000 120 chrX:19664242-19664362 1.0000 120 chr2R:22648627-22648747 1.0000 120 chr2R:11197851-11197971 1.0000 120 chr4:468730-468850 1.0000 120 chr2R:7241784-7241904 1.0000 120 chr4:466256-466376 1.0000 120 chr3R:21188094-21188214 1.0000 120 chr2R:22616957-22617077 1.0000 120 chr3R:14026155-14026275 1.0000 120 chr3R:16098965-16099085 1.0000 120 chr2R:14576126-14576246 1.0000 120 chr2L:10488622-10488742 1.0000 120 chr3L:7862867-7862987 1.0000 120 chr3L:21522501-21522621 1.0000 120 chr3R:26867906-26868026 1.0000 120 chr3L:16160270-16160390 1.0000 120 chr3L:6959702-6959822 1.0000 120 chr3L:3874269-3874389 1.0000 120 chr3R:7086055-7086175 1.0000 120 chr2R:16673047-16673167 1.0000 120 chrX:9106765-9106885 1.0000 120 chr2L:4382907-4383027 1.0000 120 chr3R:4906242-4906362 1.0000 120 chr2L:10250396-10250516 1.0000 120 chrX:8412083-8412203 1.0000 120 chr3L:10362543-10362663 1.0000 120 chr3L:4413447-4413567 1.0000 120 chr2L:10426320-10426440 1.0000 120 chr3L:9691240-9691360 1.0000 120 chr2R:11640103-11640223 1.0000 120 chr3R:13446597-13446717 1.0000 120 chr3L:11253249-11253369 1.0000 120 chr3L:3078586-3078706 1.0000 120 chr2R:18691664-18691784 1.0000 120 chr3R:25215414-25215534 1.0000 120 chr2L:8361713-8361833 1.0000 120 chr2R:24293542-24293662 1.0000 120 chr2R:17672765-17672885 1.0000 120 chr3L:20395190-20395310 1.0000 120 chr2R:6810738-6810858 1.0000 120 chrX:16103538-16103658 1.0000 120 chr2R:14009514-14009634 1.0000 120 chr2L:19397698-19397818 1.0000 120 chr3R:24580728-24580848 1.0000 120 chrX:10363160-10363280 1.0000 120 chr2R:20319409-20319529 1.0000 120 chr2R:12174530-12174650 1.0000 120 chr3R:14741386-14741506 1.0000 120 chrX:16650629-16650749 1.0000 120 chr3R:20555217-20555337 1.0000 120 chr3L:9424616-9424736 1.0000 120 chr3L:8024898-8025018 1.0000 120 chr3L:699409-699529 1.0000 120 chr3L:16147895-16148015 1.0000 120 chr2L:4224252-4224372 1.0000 120 chrX:10628910-10629030 1.0000 120 chrX:16102500-16102620 1.0000 120 chr2L:3477533-3477653 1.0000 120 chr2L:20797381-20797501 1.0000 120 chr3L:19561904-19562024 1.0000 120 chr3L:20432403-20432523 1.0000 120 chr3L:6495492-6495612 1.0000 120 chr2L:20734408-20734528 1.0000 120 chr3R:11220152-11220272 1.0000 120 chr2R:11204214-11204334 1.0000 120 chr3L:10206311-10206431 1.0000 120 chr3L:8526236-8526356 1.0000 120 chr2R:13015437-13015557 1.0000 120 chr3L:20837392-20837512 1.0000 120 chr3R:22121373-22121493 1.0000 120 chr3L:6969169-6969289 1.0000 120 chr3R:18448625-18448745 1.0000 120 chr2L:1980914-1981034 1.0000 120 chr3R:12443300-12443420 1.0000 120 chr3L:19166430-19166550 1.0000 120 chrX:7706634-7706754 1.0000 120 chr2L:15254446-15254566 1.0000 120 chr2L:7027269-7027389 1.0000 120 chr3L:21954656-21954776 1.0000 120 chr2R:12678145-12678265 1.0000 120 chr3L:18786844-18786964 1.0000 120 chr2R:13923594-13923714 1.0000 120 chr3L:19586064-19586184 1.0000 120 chr3R:6374116-6374236 1.0000 120 chr3L:20784899-20785019 1.0000 120 chr2L:16302946-16303066 1.0000 120 chr2R:21060612-21060732 1.0000 120 chr3L:9127453-9127573 1.0000 120 chrX:17510343-17510463 1.0000 120 chr2R:9544806-9544926 1.0000 120 chr2L:11091297-11091417 1.0000 120 chr2L:14394747-14394867 1.0000 120 chr2R:9847816-9847936 1.0000 120 chr3L:554636-554756 1.0000 120 chr2L:12721046-12721166 1.0000 120 chr3R:20312869-20312989 1.0000 120 chr3L:9435486-9435606 1.0000 120 chr2R:19491943-19492063 1.0000 120 chrX:3672642-3672762 1.0000 120 chr3R:9220166-9220286 1.0000 120 chr3L:16806157-16806277 1.0000 120 chr3R:18242195-18242315 1.0000 120 chr2R:7490346-7490466 1.0000 120 chr3R:29772374-29772494 1.0000 120 chr3L:3197705-3197825 1.0000 120 chr2R:10540553-10540673 1.0000 120 chr2L:21658563-21658683 1.0000 120 chr3R:26121142-26121262 1.0000 120 chr2R:11359164-11359284 1.0000 120 chr2L:4458599-4458719 1.0000 120 chr3R:26052456-26052576 1.0000 120 chr2L:15248708-15248828 1.0000 120 chr3L:13922403-13922523 1.0000 120 chr3R:13779261-13779381 1.0000 120 chr2L:6339700-6339820 1.0000 120 chr3R:17540175-17540295 1.0000 120 chr3L:18870149-18870269 1.0000 120 chr3L:1350720-1350840 1.0000 120 chr2R:17796720-17796840 1.0000 120 chr2R:8670846-8670966 1.0000 120 chr3R:29039718-29039838 1.0000 120 chr3L:9399342-9399462 1.0000 120 chr2L:14020913-14021033 1.0000 120 chr2L:14022650-14022770 1.0000 120 chr2L:3476056-3476176 1.0000 120 chr3L:8072837-8072957 1.0000 120 chr3R:5620380-5620500 1.0000 120 chr2R:17478612-17478732 1.0000 120 chr3R:30808743-30808863 1.0000 120 chr2L:1986872-1986992 1.0000 120 chrX:6340150-6340270 1.0000 120 chr3R:20328133-20328253 1.0000 120 chr2R:16129459-16129579 1.0000 120 chr3L:12136699-12136819 1.0000 120 chr2L:2161970-2162090 1.0000 120 chr2R:22686527-22686647 1.0000 120 chr2R:9440383-9440503 1.0000 120 chr2R:18326574-18326694 1.0000 120 chr3R:14649915-14650035 1.0000 120 chr3R:10696428-10696548 1.0000 120 chrX:20656668-20656788 1.0000 120 chr2L:11988095-11988215 1.0000 120 chr3R:16157586-16157706 1.0000 120 chr3R:8013355-8013475 1.0000 120 chr2L:20649807-20649927 1.0000 120 chr2R:24057459-24057579 1.0000 120 chr3R:10882299-10882419 1.0000 120 chr3R:5742273-5742393 1.0000 120 chr2L:602670-602790 1.0000 120 chr3L:8446184-8446304 1.0000 120 chrX:8113554-8113674 1.0000 120 chr3R:26654693-26654813 1.0000 120 chr2R:9092012-9092132 1.0000 120 chr3L:1740318-1740438 1.0000 120 chrX:17881253-17881373 1.0000 120 chrX:17125690-17125810 1.0000 120 chr3L:16165751-16165871 1.0000 120 chrX:12463107-12463227 1.0000 120 chrX:3672844-3672964 1.0000 120 chrX:1273009-1273129 1.0000 120 chr2R:21057324-21057444 1.0000 120 chr3L:11261083-11261203 1.0000 120 chr2L:12424689-12424809 1.0000 120 chr3L:12501337-12501457 1.0000 120 chrX:9641478-9641598 1.0000 120 chr3R:9555438-9555558 1.0000 120 chr2L:10442095-10442215 1.0000 120 chr2R:14954734-14954854 1.0000 120 chrX:4679949-4680069 1.0000 120 chr2L:6124849-6124969 1.0000 120 chr3L:7241634-7241754 1.0000 120 chr2L:285841-285961 1.0000 120 chr3R:13264045-13264165 1.0000 120 chr2R:19397010-19397130 1.0000 120 chr2R:11203105-11203225 1.0000 120 chr2R:19396796-19396916 1.0000 120 chr2R:13991309-13991429 1.0000 120 chr3R:25884384-25884504 1.0000 120 chrX:10731964-10732084 1.0000 120 chr3R:21111150-21111270 1.0000 120 chr3R:28844863-28844983 1.0000 120 chr3R:28328952-28329072 1.0000 120 chr2R:10545625-10545745 1.0000 120 chrX:4906695-4906815 1.0000 120 chr3R:13999708-13999828 1.0000 120 chr3R:11209886-11210006 1.0000 120 chr2R:11631580-11631700 1.0000 120 chr3R:15676401-15676521 1.0000 120 chr3R:18743742-18743862 1.0000 120 chr3R:21662463-21662583 1.0000 120 chr3L:21176997-21177117 1.0000 120 chr2R:23618165-23618285 1.0000 120 chr2L:4333646-4333766 1.0000 120 chr2R:7052349-7052469 1.0000 120 chr2R:18326774-18326894 1.0000 120 chr3R:10265831-10265951 1.0000 120 chr2R:21372141-21372261 1.0000 120 chr2L:14372379-14372499 1.0000 120 chr3R:7895572-7895692 1.0000 120 chr3R:13779460-13779580 1.0000 120 chr2L:21109116-21109236 1.0000 120 chr3R:13454069-13454189 1.0000 120 chr3R:10144264-10144384 1.0000 120 chr2L:2885636-2885756 1.0000 120 chr3R:22368855-22368975 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Hmx/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hmx.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.346 C 0.149 G 0.153 T 0.352 Background letter frequencies (from file dataset with add-one prior applied): A 0.346 C 0.149 G 0.153 T 0.352 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YWGCCAGC MEME-1 width = 8 sites = 12 llr = 128 E-value = 2.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YWGCCAGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :4:::a:: pos.-specific C 5:18a::a probability G 1:93::a: matrix T 46:::::: bits 2.8 * ** 2.5 * ** 2.2 * * ** 1.9 *** ** Relative 1.7 ****** Entropy 1.4 ****** (15.4 bits) 1.1 ****** 0.8 * ****** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CTGCCAGC consensus TA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YWGCCAGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8113554-8113674 58 2.79e-06 ACTATATAGC CAGCCAGC ATgtttatag chr2L:20649807-20649927 42 2.79e-06 GATTTGTTCC CAGCCAGC TGGACCACGA chr3R:5742273-5742393 20 6.11e-06 TAGCTATTTT TTGCCAGC TCTTAATGTG chr2R:18691664-18691784 82 6.11e-06 aataaaaACA TTGCCAGC GCTTAGAAAT chrX:19664242-19664362 8 6.11e-06 TAGGTAA TTGCCAGC TGTTAGTTTG chr2L:12424689-12424809 65 7.55e-06 CTAGCGCCAC CTGGCAGC AGTAGGTTCT chr3L:18870149-18870269 96 7.55e-06 TTTAACTGAT CTGGCAGC GCCGTAACTG chr3R:26654693-26654813 10 1.08e-05 AAACTGGGT TAGCCAGC AACAGAACAC chr2L:11091297-11091417 84 1.08e-05 TATTGAAAAA TAGCCAGC TTAACGAGGT chr2L:4333646-4333766 92 1.22e-05 TACAAGCAGC CAGGCAGC ACTATTGCTA chr3R:30808743-30808863 102 1.37e-05 GTGCAAGTGC GTGCCAGC GAATAAGAAG chr3L:11253249-11253369 100 2.32e-05 CAACAAAAAA CTCCCAGC AGCAATAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YWGCCAGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8113554-8113674 2.8e-06 57_[+1]_55 chr2L:20649807-20649927 2.8e-06 41_[+1]_71 chr3R:5742273-5742393 6.1e-06 19_[+1]_93 chr2R:18691664-18691784 6.1e-06 81_[+1]_31 chrX:19664242-19664362 6.1e-06 7_[+1]_105 chr2L:12424689-12424809 7.5e-06 64_[+1]_48 chr3L:18870149-18870269 7.5e-06 95_[+1]_17 chr3R:26654693-26654813 1.1e-05 9_[+1]_103 chr2L:11091297-11091417 1.1e-05 83_[+1]_29 chr2L:4333646-4333766 1.2e-05 91_[+1]_21 chr3R:30808743-30808863 1.4e-05 101_[+1]_11 chr3L:11253249-11253369 2.3e-05 99_[+1]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YWGCCAGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YWGCCAGC width=8 seqs=12 chrX:8113554-8113674 ( 58) CAGCCAGC 1 chr2L:20649807-20649927 ( 42) CAGCCAGC 1 chr3R:5742273-5742393 ( 20) TTGCCAGC 1 chr2R:18691664-18691784 ( 82) TTGCCAGC 1 chrX:19664242-19664362 ( 8) TTGCCAGC 1 chr2L:12424689-12424809 ( 65) CTGGCAGC 1 chr3L:18870149-18870269 ( 96) CTGGCAGC 1 chr3R:26654693-26654813 ( 10) TAGCCAGC 1 chr2L:11091297-11091417 ( 84) TAGCCAGC 1 chr2L:4333646-4333766 ( 92) CAGGCAGC 1 chr3R:30808743-30808863 ( 102) GTGCCAGC 1 chr3L:11253249-11253369 ( 100) CTCCCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YWGCCAGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 2.6e+001 -1023 175 -88 24 27 -1023 -1023 73 -1023 -83 258 -1023 -1023 233 71 -1023 -1023 275 -1023 -1023 153 -1023 -1023 -1023 -1023 -1023 271 -1023 -1023 275 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YWGCCAGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.6e+001 0.000000 0.500000 0.083333 0.416667 0.416667 0.000000 0.000000 0.583333 0.000000 0.083333 0.916667 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YWGCCAGC MEME-1 regular expression -------------------------------------------------------------------------------- [CT][TA]G[CG]CAGC -------------------------------------------------------------------------------- Time 7.49 secs. ******************************************************************************** ******************************************************************************** MOTIF CSCACACC MEME-2 width = 8 sites = 3 llr = 39 E-value = 4.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSCACACC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::a:a:: pos.-specific C a7a:a:aa probability G :3:::::: matrix T :::::::: bits 2.8 * * * ** 2.5 * * * ** 2.2 * * * ** 1.9 *** * ** Relative 1.7 ******** Entropy 1.4 ******** (18.6 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCCACACC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCACACC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:13264045-13264165 61 1.31e-06 AGAGTTGTCA CCCACACC GGTTGTTTGT chrX:17510343-17510463 45 1.31e-06 TGTAATATAC CCCACACC AAACACAAAA chr2L:1980914-1981034 81 2.66e-06 TGATTTATTT CGCACACC TACAGTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCACACC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:13264045-13264165 1.3e-06 60_[+2]_52 chrX:17510343-17510463 1.3e-06 44_[+2]_68 chr2L:1980914-1981034 2.7e-06 80_[+2]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCACACC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSCACACC width=8 seqs=3 chr3R:13264045-13264165 ( 61) CCCACACC 1 chrX:17510343-17510463 ( 45) CCCACACC 1 chr2L:1980914-1981034 ( 81) CGCACACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCACACC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 4.7e+003 -823 275 -823 -823 -823 216 112 -823 -823 275 -823 -823 153 -823 -823 -823 -823 275 -823 -823 153 -823 -823 -823 -823 275 -823 -823 -823 275 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCACACC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 4.7e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCACACC MEME-2 regular expression -------------------------------------------------------------------------------- C[CG]CACACC -------------------------------------------------------------------------------- Time 14.30 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCCCAAC MEME-3 width = 8 sites = 4 llr = 50 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCCCAAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::a8: pos.-specific C ::aaa::8 probability G aa::::33 matrix T :::::::: bits 2.8 ***** 2.5 ***** 2.2 ***** 1.9 ***** * Relative 1.7 ****** * Entropy 1.4 ****** * (18.1 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GGCCCAAC consensus GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCCAAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2161970-2162090 2 1.38e-06 G GGCCCAAC CTTACGTCCC chr3L:13922403-13922523 53 1.38e-06 GGTGATTTAA GGCCCAAC AAATTTATGA chr2R:21057324-21057444 75 1.99e-06 AGATAAAAAT GGCCCAGC TTGGGCTTTC chr3R:14721074-14721194 72 3.41e-06 CGTCAAAGCC GGCCCAAG CAATTATCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCCAAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2161970-2162090 1.4e-06 1_[+3]_111 chr3L:13922403-13922523 1.4e-06 52_[+3]_60 chr2R:21057324-21057444 2e-06 74_[+3]_38 chr3R:14721074-14721194 3.4e-06 71_[+3]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCCAAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCCCAAC width=8 seqs=4 chr2L:2161970-2162090 ( 2) GGCCCAAC 1 chr3L:13922403-13922523 ( 53) GGCCCAAC 1 chr2R:21057324-21057444 ( 75) GGCCCAGC 1 chr3R:14721074-14721194 ( 72) GGCCCAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCCAAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.5228 E= 1.2e+004 -865 -865 270 -865 -865 -865 270 -865 -865 275 -865 -865 -865 275 -865 -865 -865 275 -865 -865 153 -865 -865 -865 112 -865 71 -865 -865 233 71 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCCAAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.2e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.750000 0.250000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCCAAC MEME-3 regular expression -------------------------------------------------------------------------------- GGCCCA[AG][CG] -------------------------------------------------------------------------------- Time 20.57 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGCGCS MEME-4 width = 8 sites = 3 llr = 41 E-value = 5.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGCGCS MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::a:a7 probability G a:aa:a:3 matrix T :a:::::: bits 2.8 * ***** 2.5 * ***** 2.2 * ***** 1.9 * ****** Relative 1.7 * ****** Entropy 1.4 ******** (19.6 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GTGGCGCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9435486-9435606 43 6.38e-07 TGGCGAGTCA GTGGCGCC TAGCCTAGCA chr4:468730-468850 36 6.38e-07 attgtaagtt gtggcgcc aattcgcatg chr3R:21856522-21856642 80 1.29e-06 GTTTTGAGAG GTGGCGCG AGTAGGGAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9435486-9435606 6.4e-07 42_[+4]_70 chr4:468730-468850 6.4e-07 35_[+4]_77 chr3R:21856522-21856642 1.3e-06 79_[+4]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGCGCS width=8 seqs=3 chr3L:9435486-9435606 ( 43) GTGGCGCC 1 chr4:468730-468850 ( 36) GTGGCGCC 1 chr3R:21856522-21856642 ( 80) GTGGCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 5.0e+003 -823 -823 270 -823 -823 -823 -823 150 -823 -823 270 -823 -823 -823 270 -823 -823 275 -823 -823 -823 -823 270 -823 -823 275 -823 -823 -823 216 112 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 5.0e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCS MEME-4 regular expression -------------------------------------------------------------------------------- GTGGCGC[CG] -------------------------------------------------------------------------------- Time 26.82 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGCGCMC MEME-5 width = 8 sites = 7 llr = 79 E-value = 7.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGCGCMC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::4: pos.-specific C 1::91a6a probability G 71a19::: matrix T 19:::::: bits 2.8 * * * 2.5 * * * 2.2 **** * 1.9 **** * Relative 1.7 **** * Entropy 1.4 * ****** (16.2 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GTGCGCCC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCGCMC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9424616-9424736 4 6.21e-07 AGG GTGCGCCC TTATGCTAAT chr3R:13264045-13264165 2 2.33e-06 C GTGCGCAC ATGCATAGAA chr3L:18870149-18870269 57 2.94e-06 TCCCCTTCAA CTGCGCCC ATGTGAGCAA chr2R:19396796-19396916 27 4.18e-06 ATAAATAACA GTGGGCCC TCGTTTATGA chrX:4906695-4906815 4 4.81e-06 GTT GGGCGCAC GATACACTGC chr3R:20328133-20328253 56 6.24e-06 TTTTGTAACT TTGCGCCC TTCTTAGCTT chr3R:15676401-15676521 22 1.13e-05 ATTTTTTCGA GTGCCCAC TGTTTGTTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCGCMC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9424616-9424736 6.2e-07 3_[+5]_109 chr3R:13264045-13264165 2.3e-06 1_[+5]_111 chr3L:18870149-18870269 2.9e-06 56_[+5]_56 chr2R:19396796-19396916 4.2e-06 26_[+5]_86 chrX:4906695-4906815 4.8e-06 3_[+5]_109 chr3R:20328133-20328253 6.2e-06 55_[+5]_57 chr3R:15676401-15676521 1.1e-05 21_[+5]_91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCGCMC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGCGCMC width=8 seqs=7 chr3L:9424616-9424736 ( 4) GTGCGCCC 1 chr3R:13264045-13264165 ( 2) GTGCGCAC 1 chr3L:18870149-18870269 ( 57) CTGCGCCC 1 chr2R:19396796-19396916 ( 27) GTGGGCCC 1 chrX:4906695-4906815 ( 4) GGGCGCAC 1 chr3R:20328133-20328253 ( 56) TTGCGCCC 1 chr3R:15676401-15676521 ( 22) GTGCCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCGCMC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 7.6e+003 -945 -6 222 -130 -945 -945 -10 128 -945 -945 270 -945 -945 253 -10 -945 -945 -6 248 -945 -945 275 -945 -945 31 194 -945 -945 -945 275 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCGCMC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 7.6e+003 0.000000 0.142857 0.714286 0.142857 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCGCMC MEME-5 regular expression -------------------------------------------------------------------------------- GTGCGC[CA]C -------------------------------------------------------------------------------- Time 33.02 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:2124-2244 1.17e-02 3_[+1(3.95e-05)]_109 chrM:5075-5195 8.94e-03 120 chrM:10958-11078 9.76e-01 120 chrM:1597-1717 8.49e-01 120 chrM:2716-2836 5.47e-01 120 chrM:7341-7461 2.86e-01 120 chrM:3487-3607 8.21e-01 120 chrM:5274-5394 4.53e-01 120 chrM:1804-1924 1.07e-01 120 chrM:8622-8742 9.87e-01 120 chrM:8824-8944 2.09e-01 120 chrM:10754-10874 8.50e-01 120 chr3L:20396063-20396183 2.94e-01 120 chr3L:7855297-7855417 1.33e-01 120 chr3L:20823395-20823515 8.84e-01 120 chrX:8294411-8294531 2.85e-01 120 chr2L:15062144-15062264 4.40e-01 120 chr2L:12416007-12416127 9.14e-01 120 chr3L:17948733-17948853 8.07e-01 120 chr2L:22281809-22281929 9.39e-01 120 chrX:15803834-15803954 2.22e-01 120 chr3R:14721074-14721194 2.78e-03 71_[+3(3.41e-06)]_41 chr3L:259081-259201 2.30e-01 120 chr3R:18914375-18914495 2.63e-01 120 chr2L:6921892-6922012 1.59e-05 106_[+5(4.47e-05)]_6 chr3R:25056269-25056389 8.22e-01 120 chrX:3399533-3399653 9.52e-03 94_[+2(9.47e-05)]_18 chr3L:4413245-4413365 5.21e-01 120 chr3L:12409060-12409180 2.92e-01 120 chr3R:21856522-21856642 2.12e-04 79_[+4(1.29e-06)]_33 chr3R:16996146-16996266 9.97e-01 120 chr2R:14907742-14907862 6.84e-01 120 chr2R:13438155-13438275 9.16e-01 120 chr3L:21604706-21604826 9.33e-01 120 chr2L:8115946-8116066 3.66e-03 120 chr3R:21359909-21360029 6.36e-01 120 chr3R:23941641-23941761 9.61e-01 120 chrX:7703105-7703225 9.98e-01 120 chr3R:16241886-16242006 6.72e-01 120 chr2R:1522919-1523039 2.29e-01 120 chr3L:20393779-20393899 3.64e-01 120 chr2R:6991331-6991451 1.00e+00 120 chr2L:10232844-10232964 9.46e-01 120 chr3R:20310979-20311099 9.03e-01 120 chr3L:20187659-20187779 8.54e-01 120 chrX:19664242-19664362 2.70e-03 7_[+1(6.11e-06)]_105 chr2R:22648627-22648747 8.31e-01 120 chr2R:11197851-11197971 2.34e-01 120 chr4:468730-468850 1.15e-03 35_[+4(6.38e-07)]_77 chr2R:7241784-7241904 9.51e-01 120 chr4:466256-466376 3.64e-01 120 chr3R:21188094-21188214 5.54e-02 120 chr2R:22616957-22617077 3.00e-01 120 chr3R:14026155-14026275 4.23e-01 120 chr3R:16098965-16099085 1.71e-01 120 chr2R:14576126-14576246 2.85e-01 120 chr2L:10488622-10488742 2.25e-01 120 chr3L:7862867-7862987 2.66e-02 120 chr3L:21522501-21522621 8.32e-01 120 chr3R:26867906-26868026 6.29e-01 120 chr3L:16160270-16160390 9.78e-02 120 chr3L:6959702-6959822 3.49e-01 120 chr3L:3874269-3874389 9.64e-01 120 chr3R:7086055-7086175 6.32e-01 120 chr2R:16673047-16673167 3.64e-01 120 chrX:9106765-9106885 7.25e-01 120 chr2L:4382907-4383027 5.71e-01 120 chr3R:4906242-4906362 9.67e-01 120 chr2L:10250396-10250516 3.40e-01 120 chrX:8412083-8412203 8.81e-01 120 chr3L:10362543-10362663 8.85e-01 120 chr3L:4413447-4413567 8.18e-01 120 chr2L:10426320-10426440 9.26e-01 120 chr3L:9691240-9691360 9.96e-01 120 chr2R:11640103-11640223 2.90e-03 96_[+1(5.87e-05)]_16 chr3R:13446597-13446717 7.94e-01 120 chr3L:11253249-11253369 1.49e-02 99_[+1(2.32e-05)]_13 chr3L:3078586-3078706 5.74e-02 120 chr2R:18691664-18691784 4.49e-02 81_[+1(6.11e-06)]_31 chr3R:25215414-25215534 8.63e-01 120 chr2L:8361713-8361833 4.72e-02 120 chr2R:24293542-24293662 1.60e-02 120 chr2R:17672765-17672885 7.41e-01 120 chr3L:20395190-20395310 9.99e-01 120 chr2R:6810738-6810858 1.39e-02 79_[+2(9.47e-05)]_33 chrX:16103538-16103658 2.91e-02 108_[+3(6.01e-05)]_4 chr2R:14009514-14009634 9.99e-01 120 chr2L:19397698-19397818 8.62e-01 120 chr3R:24580728-24580848 6.38e-01 120 chrX:10363160-10363280 4.02e-01 120 chr2R:20319409-20319529 1.25e-02 33_[+4(9.50e-05)]_79 chr2R:12174530-12174650 9.62e-01 120 chr3R:14741386-14741506 1.08e-01 120 chrX:16650629-16650749 3.38e-01 120 chr3R:20555217-20555337 9.62e-02 120 chr3L:9424616-9424736 3.00e-04 3_[+5(6.21e-07)]_109 chr3L:8024898-8025018 2.04e-01 120 chr3L:699409-699529 6.89e-01 120 chr3L:16147895-16148015 5.67e-03 120 chr2L:4224252-4224372 1.77e-01 120 chrX:10628910-10629030 1.00e+00 120 chrX:16102500-16102620 4.92e-02 120 chr2L:3477533-3477653 2.64e-01 120 chr2L:20797381-20797501 7.98e-01 120 chr3L:19561904-19562024 8.92e-01 120 chr3L:20432403-20432523 1.76e-01 120 chr3L:6495492-6495612 5.43e-01 120 chr2L:20734408-20734528 8.95e-01 120 chr3R:11220152-11220272 7.03e-01 120 chr2R:11204214-11204334 4.71e-01 120 chr3L:10206311-10206431 9.99e-01 120 chr3L:8526236-8526356 7.24e-02 120 chr2R:13015437-13015557 8.93e-01 120 chr3L:20837392-20837512 5.70e-01 120 chr3R:22121373-22121493 3.77e-01 120 chr3L:6969169-6969289 6.73e-01 120 chr3R:18448625-18448745 8.55e-01 120 chr2L:1980914-1981034 1.52e-03 80_[+2(2.66e-06)]_32 chr3R:12443300-12443420 8.64e-02 120 chr3L:19166430-19166550 5.71e-02 120 chrX:7706634-7706754 2.98e-01 120 chr2L:15254446-15254566 8.72e-01 120 chr2L:7027269-7027389 4.63e-01 120 chr3L:21954656-21954776 1.27e-02 120 chr2R:12678145-12678265 2.12e-01 120 chr3L:18786844-18786964 9.58e-01 120 chr2R:13923594-13923714 8.00e-01 120 chr3L:19586064-19586184 6.31e-01 120 chr3R:6374116-6374236 2.97e-01 120 chr3L:20784899-20785019 8.97e-01 120 chr2L:16302946-16303066 9.68e-01 120 chr2R:21060612-21060732 9.68e-01 120 chr3L:9127453-9127573 1.00e+00 120 chrX:17510343-17510463 5.42e-04 44_[+2(1.31e-06)]_68 chr2R:9544806-9544926 9.20e-01 120 chr2L:11091297-11091417 3.33e-02 83_[+1(1.08e-05)]_29 chr2L:14394747-14394867 2.74e-01 120 chr2R:9847816-9847936 6.45e-02 120 chr3L:554636-554756 5.30e-01 120 chr2L:12721046-12721166 1.00e+00 120 chr3R:20312869-20312989 3.97e-01 120 chr3L:9435486-9435606 2.09e-04 42_[+4(6.38e-07)]_70 chr2R:19491943-19492063 9.92e-01 120 chrX:3672642-3672762 3.24e-01 120 chr3R:9220166-9220286 5.05e-03 22_[+4(5.46e-06)]_90 chr3L:16806157-16806277 9.00e-01 120 chr3R:18242195-18242315 9.88e-01 120 chr2R:7490346-7490466 6.07e-02 120 chr3R:29772374-29772494 9.53e-01 120 chr3L:3197705-3197825 3.30e-01 120 chr2R:10540553-10540673 2.52e-01 120 chr2L:21658563-21658683 9.22e-02 120 chr3R:26121142-26121262 3.51e-01 120 chr2R:11359164-11359284 1.60e-01 120 chr2L:4458599-4458719 8.68e-02 120 chr3R:26052456-26052576 7.27e-01 120 chr2L:15248708-15248828 3.32e-01 120 chr3L:13922403-13922523 3.10e-03 52_[+3(1.38e-06)]_60 chr3R:13779261-13779381 6.55e-01 120 chr2L:6339700-6339820 3.62e-01 120 chr3R:17540175-17540295 7.96e-01 120 chr3L:18870149-18870269 1.74e-06 56_[+5(2.94e-06)]_31_[+1(7.55e-06)]_\ 17 chr3L:1350720-1350840 2.05e-01 120 chr2R:17796720-17796840 5.01e-01 120 chr2R:8670846-8670966 4.57e-01 120 chr3R:29039718-29039838 7.31e-02 120 chr3L:9399342-9399462 2.54e-02 86_[+5(4.86e-05)]_26 chr2L:14020913-14021033 8.33e-01 120 chr2L:14022650-14022770 2.79e-01 120 chr2L:3476056-3476176 9.56e-01 120 chr3L:8072837-8072957 8.06e-01 120 chr3R:5620380-5620500 9.28e-01 120 chr2R:17478612-17478732 4.74e-01 120 chr3R:30808743-30808863 1.92e-04 101_[+1(1.37e-05)]_11 chr2L:1986872-1986992 8.79e-01 120 chrX:6340150-6340270 7.44e-01 120 chr3R:20328133-20328253 2.74e-03 55_[+5(6.24e-06)]_57 chr2R:16129459-16129579 5.55e-01 120 chr3L:12136699-12136819 8.87e-01 120 chr2L:2161970-2162090 1.63e-04 1_[+3(1.38e-06)]_111 chr2R:22686527-22686647 9.50e-01 120 chr2R:9440383-9440503 6.20e-01 120 chr2R:18326574-18326694 5.98e-02 120 chr3R:14649915-14650035 5.74e-01 120 chr3R:10696428-10696548 3.01e-01 120 chrX:20656668-20656788 4.56e-01 120 chr2L:11988095-11988215 9.97e-01 120 chr3R:16157586-16157706 5.63e-01 120 chr3R:8013355-8013475 9.99e-01 120 chr2L:20649807-20649927 4.55e-04 41_[+1(2.79e-06)]_71 chr2R:24057459-24057579 9.59e-01 120 chr3R:10882299-10882419 6.29e-01 120 chr3R:5742273-5742393 1.85e-03 19_[+1(6.11e-06)]_93 chr2L:602670-602790 1.88e-02 96_[+5(4.47e-05)]_16 chr3L:8446184-8446304 8.06e-01 120 chrX:8113554-8113674 5.57e-03 57_[+1(2.79e-06)]_55 chr3R:26654693-26654813 1.07e-03 9_[+1(1.08e-05)]_103 chr2R:9092012-9092132 2.49e-01 120 chr3L:1740318-1740438 6.53e-03 120 chrX:17881253-17881373 7.93e-01 120 chrX:17125690-17125810 7.91e-01 120 chr3L:16165751-16165871 4.88e-01 120 chrX:12463107-12463227 3.68e-02 120 chrX:3672844-3672964 1.65e-01 120 chrX:1273009-1273129 3.63e-01 120 chr2R:21057324-21057444 9.86e-04 74_[+3(1.99e-06)]_38 chr3L:11261083-11261203 3.02e-01 120 chr2L:12424689-12424809 5.40e-04 64_[+1(7.55e-06)]_48 chr3L:12501337-12501457 9.98e-01 120 chrX:9641478-9641598 1.69e-01 120 chr3R:9555438-9555558 2.37e-02 34_[+4(5.01e-05)]_78 chr2L:10442095-10442215 6.00e-01 120 chr2R:14954734-14954854 9.89e-01 120 chrX:4679949-4680069 2.86e-01 120 chr2L:6124849-6124969 6.33e-01 120 chr3L:7241634-7241754 3.33e-01 120 chr2L:285841-285961 5.81e-01 120 chr3R:13264045-13264165 3.14e-05 1_[+5(2.33e-06)]_51_[+2(1.31e-06)]_\ 52 chr2R:19397010-19397130 7.65e-01 120 chr2R:11203105-11203225 9.74e-01 120 chr2R:19396796-19396916 1.02e-03 26_[+5(4.18e-06)]_86 chr2R:13991309-13991429 1.75e-01 120 chr3R:25884384-25884504 6.41e-01 120 chrX:10731964-10732084 5.66e-01 120 chr3R:21111150-21111270 9.81e-01 120 chr3R:28844863-28844983 4.59e-01 87_[+2(9.47e-05)]_25 chr3R:28328952-28329072 1.06e-01 120 chr2R:10545625-10545745 9.07e-01 120 chrX:4906695-4906815 1.83e-03 3_[+5(4.81e-06)]_109 chr3R:13999708-13999828 3.91e-01 120 chr3R:11209886-11210006 3.61e-01 120 chr2R:11631580-11631700 1.61e-01 120 chr3R:15676401-15676521 2.25e-03 21_[+5(1.13e-05)]_91 chr3R:18743742-18743862 6.38e-01 120 chr3R:21662463-21662583 9.67e-01 120 chr3L:21176997-21177117 9.19e-01 120 chr2R:23618165-23618285 9.89e-01 120 chr2L:4333646-4333766 1.29e-02 91_[+1(1.22e-05)]_21 chr2R:7052349-7052469 8.55e-01 120 chr2R:18326774-18326894 1.58e-02 120 chr3R:10265831-10265951 8.58e-01 120 chr2R:21372141-21372261 4.98e-01 120 chr2L:14372379-14372499 9.99e-01 120 chr3R:7895572-7895692 4.70e-01 120 chr3R:13779460-13779580 6.58e-02 120 chr2L:21109116-21109236 6.03e-02 120 chr3R:13454069-13454189 8.70e-01 120 chr3R:10144264-10144384 9.73e-01 120 chr2L:2885636-2885756 7.17e-01 120 chr3R:22368855-22368975 8.05e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************