******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hmr.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:1243471-1243591 1.0000 120 chr4:834988-835108 1.0000 120 chr4:979979-980099 1.0000 120 chr2R:1243719-1243839 1.0000 120 chr4:68713-68833 1.0000 120 chr3R:3374279-3374399 1.0000 120 chr2L:3755263-3755383 1.0000 120 chrX:4956076-4956196 1.0000 120 chr3R:25870523-25870643 1.0000 120 chr4:697569-697689 1.0000 120 chr2R:13909067-13909187 1.0000 120 chr3R:18508400-18508520 1.0000 120 chr3R:24544434-24544554 1.0000 120 chr3R:9784505-9784625 1.0000 120 chrX:9431542-9431662 1.0000 120 chr2L:1043745-1043865 1.0000 120 chr2R:15155109-15155229 1.0000 120 chr3R:25968669-25968789 1.0000 120 chr3R:28959297-28959417 1.0000 120 chr3R:17526198-17526318 1.0000 120 chr2L:540693-540813 1.0000 120 chr2R:25183077-25183197 1.0000 120 chr2L:5085000-5085120 1.0000 120 chr2R:22033375-22033495 1.0000 120 chr2R:18605462-18605582 1.0000 120 chr2R:25253211-25253331 1.0000 120 chr2R:20270978-20271098 1.0000 120 chr3R:30198962-30199082 1.0000 120 chr3R:31363747-31363867 1.0000 120 chr2L:4936446-4936566 1.0000 120 chr2R:7407826-7407946 1.0000 120 chr3L:2913410-2913530 1.0000 120 chr2L:9779200-9779320 1.0000 120 chr3L:17791647-17791767 1.0000 120 chr3R:22639555-22639675 1.0000 120 chr2L:1619302-1619422 1.0000 120 chr3R:18296252-18296372 1.0000 120 chr3L:17447988-17448108 1.0000 120 chr3R:7217316-7217436 1.0000 120 chr2L:4928511-4928631 1.0000 120 chr3R:12712592-12712712 1.0000 120 chr2R:17098556-17098676 1.0000 120 chr2L:1207588-1207708 1.0000 120 chrX:3282097-3282217 1.0000 120 chr2R:9756268-9756388 1.0000 120 chr3L:19961903-19962023 1.0000 120 chr2R:22789399-22789519 1.0000 120 chr2L:2015405-2015525 1.0000 120 chr2R:24139200-24139320 1.0000 120 chr2L:1135611-1135731 1.0000 120 chr2L:6088945-6089065 1.0000 120 chr3R:7821726-7821846 1.0000 120 chr2L:21397347-21397467 1.0000 120 chr3L:21321975-21322095 1.0000 120 chr3L:2244151-2244271 1.0000 120 chr2L:13882063-13882183 1.0000 120 chr3R:20273709-20273829 1.0000 120 chr2R:15480315-15480435 1.0000 120 chr3R:5217465-5217585 1.0000 120 chr2L:1637981-1638101 1.0000 120 chr3R:13803949-13804069 1.0000 120 chr3R:8577730-8577850 1.0000 120 chr3R:5746786-5746906 1.0000 120 chr2R:15532258-15532378 1.0000 120 chr2L:20638612-20638732 1.0000 120 chr3R:30802277-30802397 1.0000 120 chr3L:19087982-19088102 1.0000 120 chr3R:16656195-16656315 1.0000 120 chrX:20797642-20797762 1.0000 120 chr2L:1987919-1988039 1.0000 120 chr2L:9864430-9864550 1.0000 120 chr3R:23820462-23820582 1.0000 120 chr2R:8734624-8734744 1.0000 120 chrX:5408993-5409113 1.0000 120 chrX:8112825-8112945 1.0000 120 chr3L:20221512-20221632 1.0000 120 chr3L:1976890-1977010 1.0000 120 chr3R:24102578-24102698 1.0000 120 chr3R:17404299-17404419 1.0000 120 chr2L:17558226-17558346 1.0000 120 chr3R:10699213-10699333 1.0000 120 chr2L:6971858-6971978 1.0000 120 chr3L:19847086-19847206 1.0000 120 chr3L:5182388-5182508 1.0000 120 chr2R:17412637-17412757 1.0000 120 chr2R:22508220-22508340 1.0000 120 chrX:10184794-10184914 1.0000 120 chrX:20434714-20434834 1.0000 120 chr2L:18944258-18944378 1.0000 120 chr3L:11580082-11580202 1.0000 120 chr2R:16916246-16916366 1.0000 120 chr2L:2348622-2348742 1.0000 120 chr3R:16476611-16476731 1.0000 120 chr2L:14141354-14141474 1.0000 120 chrX:3719793-3719913 1.0000 120 chrX:7995246-7995366 1.0000 120 chr3L:3801436-3801556 1.0000 120 chr2R:14136971-14137091 1.0000 120 chr2R:15073208-15073328 1.0000 120 chr3R:10024175-10024295 1.0000 120 chr3L:12409177-12409297 1.0000 120 chr3R:26494398-26494518 1.0000 120 chr3L:12350426-12350546 1.0000 120 chr2L:20148487-20148607 1.0000 120 chrX:796638-796758 1.0000 120 chr3R:26280491-26280611 1.0000 120 chrX:18125654-18125774 1.0000 120 chr3L:11556822-11556942 1.0000 120 chr3R:30325588-30325708 1.0000 120 chr2R:17085654-17085774 1.0000 120 chrX:1399756-1399876 1.0000 120 chr2L:85237-85357 1.0000 120 chr2R:22387355-22387475 1.0000 120 chr2L:1837833-1837953 1.0000 120 chr2L:9509816-9509936 1.0000 120 chr2R:20603267-20603387 1.0000 120 chr3L:4000826-4000946 1.0000 120 chrX:13676601-13676721 1.0000 120 chr3R:22108436-22108556 1.0000 120 chr3R:31636690-31636810 1.0000 120 chr3L:3932896-3933016 1.0000 120 chr3L:17625139-17625259 1.0000 120 chrX:515838-515958 1.0000 120 chr3L:1576522-1576642 1.0000 120 chr3R:28118241-28118361 1.0000 120 chr2R:12218861-12218981 1.0000 120 chrX:11816684-11816804 1.0000 120 chr2L:13461101-13461221 1.0000 120 chrX:4366303-4366423 1.0000 120 chr3L:18837962-18838082 1.0000 120 chrX:16573780-16573900 1.0000 120 chr2L:1715867-1715987 1.0000 120 chr3R:13804160-13804280 1.0000 120 chr3R:26555996-26556116 1.0000 120 chr3R:5393864-5393984 1.0000 120 chr3R:22464662-22464782 1.0000 120 chr3R:17966142-17966262 1.0000 120 chr2R:13008264-13008384 1.0000 120 chr2R:22373596-22373716 1.0000 120 chr3R:10100659-10100779 1.0000 120 chr3R:15128981-15129101 1.0000 120 chr3R:9390363-9390483 1.0000 120 chr3L:4025860-4025980 1.0000 120 chr3L:14804755-14804875 1.0000 120 chrX:6524340-6524460 1.0000 120 chr3R:26261523-26261643 1.0000 120 chr2L:6082973-6083093 1.0000 120 chr3R:29891320-29891440 1.0000 120 chr2R:10013329-10013449 1.0000 120 chr2L:22169213-22169333 1.0000 120 chr3L:13903366-13903486 1.0000 120 chr3L:8093804-8093924 1.0000 120 chr2R:10899040-10899160 1.0000 120 chr3R:16260516-16260636 1.0000 120 chr3L:548985-549105 1.0000 120 chr2L:8692557-8692677 1.0000 120 chr3L:8584223-8584343 1.0000 120 chrX:6592195-6592315 1.0000 120 chr3R:14875717-14875837 1.0000 120 chr3L:16160132-16160252 1.0000 120 chr3L:17474964-17475084 1.0000 120 chr3L:15549087-15549207 1.0000 120 chrX:12938026-12938146 1.0000 120 chrX:7323774-7323894 1.0000 120 chr2R:10194995-10195115 1.0000 120 chr3R:17670842-17670962 1.0000 120 chr3L:21859756-21859876 1.0000 120 chr3L:11258543-11258663 1.0000 120 chr3R:14479766-14479886 1.0000 120 chr3R:5413151-5413271 1.0000 120 chr3L:19845651-19845771 1.0000 120 chr3R:25275497-25275617 1.0000 120 chr2R:7071063-7071183 1.0000 120 chr2L:13082305-13082425 1.0000 120 chr2L:2872723-2872843 1.0000 120 chr3R:20252608-20252728 1.0000 120 chrX:10763068-10763188 1.0000 120 chr3L:3411795-3411915 1.0000 120 chr2L:12546743-12546863 1.0000 120 chr2R:24893682-24893802 1.0000 120 chr3R:15250627-15250747 1.0000 120 chr2L:9775374-9775494 1.0000 120 chrX:18094840-18094960 1.0000 120 chr2L:937039-937159 1.0000 120 chr3R:26333442-26333562 1.0000 120 chr2L:1094811-1094931 1.0000 120 chr3R:28556540-28556660 1.0000 120 chr3R:23722117-23722237 1.0000 120 chr2R:10739827-10739947 1.0000 120 chr3R:21187942-21188062 1.0000 120 chrX:18082877-18082997 1.0000 120 chr2L:7494396-7494516 1.0000 120 chr3R:23176845-23176965 1.0000 120 chrX:16547547-16547667 1.0000 120 chr3L:6609316-6609436 1.0000 120 chr3L:21484038-21484158 1.0000 120 chr3L:4353821-4353941 1.0000 120 chr2R:7012103-7012223 1.0000 120 chrX:16580051-16580171 1.0000 120 chr3R:9039555-9039675 1.0000 120 chr2L:7871938-7872058 1.0000 120 chrX:5664340-5664460 1.0000 120 chr3R:10350053-10350173 1.0000 120 chr2R:11679320-11679440 1.0000 120 chr2L:3373394-3373514 1.0000 120 chr2L:4454461-4454581 1.0000 120 chr2R:22162311-22162431 1.0000 120 chr2R:17848918-17849038 1.0000 120 chr3L:2845305-2845425 1.0000 120 chr2R:9388577-9388697 1.0000 120 chr2R:9541718-9541838 1.0000 120 chr3R:26121249-26121369 1.0000 120 chr2L:1142824-1142944 1.0000 120 chrX:8542108-8542228 1.0000 120 chr3L:3543854-3543974 1.0000 120 chr2R:14480980-14481100 1.0000 120 chr3L:15034465-15034585 1.0000 120 chr2R:4012768-4012888 1.0000 120 chrX:759131-759251 1.0000 120 chr3R:30889079-30889199 1.0000 120 chr3L:3078949-3079069 1.0000 120 chr3L:3770962-3771082 1.0000 120 chr2R:22062432-22062552 1.0000 120 chr3R:21246591-21246711 1.0000 120 chr2R:11178506-11178626 1.0000 120 chr3R:21176732-21176852 1.0000 120 chrX:10573636-10573756 1.0000 120 chr2R:8002314-8002434 1.0000 120 chrX:11081322-11081442 1.0000 120 chr2R:12035171-12035291 1.0000 120 chr3L:15814172-15814292 1.0000 120 chr2R:12593478-12593598 1.0000 120 chr2L:540894-541014 1.0000 120 chr2L:12372592-12372712 1.0000 120 chr3R:23214838-23214958 1.0000 120 chrX:4262811-4262931 1.0000 120 chr2L:18136698-18136818 1.0000 120 chr3R:19924485-19924605 1.0000 120 chrX:19348980-19349100 1.0000 120 chr2L:20715158-20715278 1.0000 120 chr2L:1724386-1724506 1.0000 120 chr2L:10565826-10565946 1.0000 120 chr3L:9968374-9968494 1.0000 120 chr3L:8689815-8689935 1.0000 120 chr2L:11199204-11199324 1.0000 120 chr3L:13356189-13356309 1.0000 120 chr2R:24657140-24657260 1.0000 120 chrX:20503285-20503405 1.0000 120 chr2R:16551964-16552084 1.0000 120 chr2L:2373965-2374085 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Hmr/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hmr.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.32 C 0.18 G 0.179 T 0.321 Background letter frequencies (from file dataset with add-one prior applied): A 0.32 C 0.18 G 0.179 T 0.321 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGGSGGGS MEME-1 width = 8 sites = 8 llr = 91 E-value = 9.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGSGGGS MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::3:: pos.-specific C ::16:::4 probability G aa94a8a6 matrix T :::::::: bits 2.5 ** * * 2.2 ** * * 2.0 *** * * 1.7 *** * * Relative 1.5 ******** Entropy 1.2 ******** (16.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGCGGGG consensus G A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSGGGS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6592195-6592315 28 1.06e-06 TGGGTGGCGG GGGCGGGG GGGTATGGGC chr3L:8093804-8093924 88 3.18e-06 TAGTTGTGGG GGGGGGGG GGGTAGACAA chrX:5408993-5409113 113 3.18e-06 CTGGCCGAGT GGGCGGGC chr2L:20638612-20638732 93 3.18e-06 CAGTGCTTGC GGGCGGGC GCTCTCAAAT chrX:3282097-3282217 13 3.18e-06 AATGGTTGCG GGGGGGGG GGTGGTTATT chr3R:30802277-30802397 18 7.20e-06 ATGCGAATTT GGCCGGGG TTGAGCACAC chr2L:937039-937159 9 1.10e-05 TGTTGGTT GGGGGAGG GGACACCAGT chr2L:18944258-18944378 22 1.10e-05 AGCTCACCGC GGGCGAGC GAGACAACCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSGGGS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6592195-6592315 1.1e-06 27_[+1]_85 chr3L:8093804-8093924 3.2e-06 87_[+1]_25 chrX:5408993-5409113 3.2e-06 112_[+1] chr2L:20638612-20638732 3.2e-06 92_[+1]_20 chrX:3282097-3282217 3.2e-06 12_[+1]_100 chr3R:30802277-30802397 7.2e-06 17_[+1]_95 chr2L:937039-937159 1.1e-05 8_[+1]_104 chr2L:18944258-18944378 1.1e-05 21_[+1]_91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSGGGS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGSGGGS width=8 seqs=8 chrX:6592195-6592315 ( 28) GGGCGGGG 1 chr3L:8093804-8093924 ( 88) GGGGGGGG 1 chrX:5408993-5409113 ( 113) GGGCGGGC 1 chr2L:20638612-20638732 ( 93) GGGCGGGC 1 chrX:3282097-3282217 ( 13) GGGGGGGG 1 chr3R:30802277-30802397 ( 18) GGCCGGGG 1 chr2L:937039-937159 ( 9) GGGGGAGG 1 chr2L:18944258-18944378 ( 22) GGGCGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSGGGS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.1077 E= 9.7e+002 -965 -965 248 -965 -965 -965 248 -965 -965 -52 229 -965 -965 180 107 -965 -965 -965 248 -965 -36 -965 206 -965 -965 -965 248 -965 -965 106 180 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSGGGS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 9.7e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 0.625000 0.375000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.625000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSGGGS MEME-1 regular expression -------------------------------------------------------------------------------- GGG[CG]G[GA]G[GC] -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF HGYYGCCA MEME-2 width = 8 sites = 41 llr = 342 E-value = 7.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif HGYYGCCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4::::::7 pos.-specific C 3:45:8a: probability G :a1:a2:3 matrix T 3:45:::: bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * *** Relative 1.5 * *** Entropy 1.2 * *** (12.0 bits) 1.0 * ***** 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel AGCCGCCA consensus C TT G G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGYYGCCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16573780-16573900 100 1.94e-06 ACATTCGAAC CGCCGCCA ACAACAATTG chr2L:13082305-13082425 98 6.47e-06 GTGCAAACAA AGCCGCCA AAGCATATGG chr2L:20638612-20638732 77 6.47e-06 CAGTGTGACC AGCCGCCA GTGCTTGCGG chr2L:4928511-4928631 81 6.47e-06 GCATTGAAAG CGCCGCCG AGAATTGAAT chr2L:4936446-4936566 82 1.88e-05 GTTTCCATTC AGCCGCCG GCGCTGCTTT chr2L:1043745-1043865 38 1.88e-05 AATGAAAGGA AGCCGCCG AGTCTGAAGT chr2R:17412637-17412757 50 2.88e-05 TTTGATGCAG AGCTGCCA ACCCATGTTT chr4:68713-68833 107 2.88e-05 ACATATCGGG AGCTGCCA TACGAT chr3R:21187942-21188062 112 4.07e-05 TCAAAGGTTA CGGCGCCA T chr3R:20252608-20252728 45 4.07e-05 CACCCGCTCG CGGCGCCA GTGTAACCGT chr3R:26261523-26261643 41 4.07e-05 GTTTGGAGGT CGTCGCCG ACGGTGTTGG chrX:7323774-7323894 52 4.69e-05 CACGCCACTT TGCTGCCA GACTGTTTGA chr3R:16656195-16656315 37 4.69e-05 TTGACGCTAG TGCTGCCA GATCTTCGAA chrX:18082877-18082997 89 5.92e-05 TGGAAAATTT TGTCGCCA GTTCAAACAG chr2R:10739827-10739947 89 5.92e-05 ACAAACATAG CGTTGCCA TACTATATGC chr3R:20273709-20273829 10 5.92e-05 GCGTCGCGG TGTCGCCA TCAGTCAAAG chr3R:22639555-22639675 65 5.92e-05 ATGAAGCAAT CGTTGCCA CACTGGGCTG chr2L:1724386-1724506 26 7.51e-05 CGCCGCTGCG AGGCGCCA AGAAACGACC chr3R:23722117-23722237 79 7.51e-05 TTATTTGGAT AGCCGGCA ACGTCACAAT chr3R:30802277-30802397 54 7.51e-05 GATGATAACA AGTCGCCG GAGCATATGG chr3R:16260516-16260636 9 7.85e-05 AATTTTAG TGCTGCCG TTACTTGTAA chrX:6524340-6524460 104 7.85e-05 CGGACCGGTG TGCTGCCG GCATGGTAT chr2R:14480980-14481100 107 1.10e-04 TAACTTTCAG AGTTGCCA GATCAC chr2R:20603267-20603387 34 1.10e-04 TTTAGACCAG TGGCGCCA CCAAACGACA chr3L:1976890-1977010 104 1.10e-04 CTCATCTTTC CGCTGGCA AATCTAAGT chr2R:7407826-7407946 42 1.10e-04 ACAGAGTGAC CGTTGCCG AAAAAACGGT chr4:697569-697689 84 1.10e-04 ACACGCCGAG AGTTGCCA TCCTGATACG chr3L:3078949-3079069 89 1.30e-04 TCGTAGTGGC TGTTGCCA TTGCTAGTCA chr2R:11679320-11679440 41 1.30e-04 CTATTTTCAG TGTTGCCA CAGCCATTTA chr3L:1576522-1576642 17 1.30e-04 ATCCATCTCT TGTTGCCA CCTTTTTTAT chr3R:10350053-10350173 65 1.56e-04 CCACTGGTTG CGGTGCCG TGTATTGTCA chrX:3719793-3719913 38 1.56e-04 GTTGTGCACT CGCTGGCG AGCGGTTTAA chrX:9431542-9431662 47 1.56e-04 AGTTGAGTTA AGCTGGCA TTGGAACAGT chr2L:18136698-18136818 16 1.67e-04 ACGACAAAAG CGGCGGCA AATATTCGTT chr3R:29891320-29891440 19 1.67e-04 GCTGTCAGCC AGTCGGCA GTTTTCAGGT chr3L:14804755-14804875 47 1.67e-04 GTCTTTGCGC AGTCGGCA ATGCCGAAGC chr2R:7012103-7012223 89 1.86e-04 TGCTGACTTT TGCTGGCA TATTTAGGGC chr3R:17670842-17670962 7 2.01e-04 TTTATT TGTCGGCA GGAAAACAAC chrX:796638-796758 19 2.01e-04 AGATCGAAAG GGCTGCCA GCTGCAGCTT chr3R:13804160-13804280 97 2.12e-04 TGATCATTCA GGTCGCCA AAGCGCTTAG chr3L:12350426-12350546 18 2.20e-04 CTCTAATTCA AGTCGGCG TGGCTGTTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGYYGCCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16573780-16573900 1.9e-06 99_[+2]_13 chr2L:13082305-13082425 6.5e-06 97_[+2]_15 chr2L:20638612-20638732 6.5e-06 76_[+2]_36 chr2L:4928511-4928631 6.5e-06 80_[+2]_32 chr2L:4936446-4936566 1.9e-05 81_[+2]_31 chr2L:1043745-1043865 1.9e-05 37_[+2]_75 chr2R:17412637-17412757 2.9e-05 49_[+2]_63 chr4:68713-68833 2.9e-05 106_[+2]_6 chr3R:21187942-21188062 4.1e-05 111_[+2]_1 chr3R:20252608-20252728 4.1e-05 44_[+2]_68 chr3R:26261523-26261643 4.1e-05 40_[+2]_72 chrX:7323774-7323894 4.7e-05 51_[+2]_61 chr3R:16656195-16656315 4.7e-05 36_[+2]_76 chrX:18082877-18082997 5.9e-05 88_[+2]_24 chr2R:10739827-10739947 5.9e-05 88_[+2]_24 chr3R:20273709-20273829 5.9e-05 9_[+2]_103 chr3R:22639555-22639675 5.9e-05 64_[+2]_48 chr2L:1724386-1724506 7.5e-05 25_[+2]_87 chr3R:23722117-23722237 7.5e-05 78_[+2]_34 chr3R:30802277-30802397 7.5e-05 53_[+2]_59 chr3R:16260516-16260636 7.9e-05 8_[+2]_104 chrX:6524340-6524460 7.9e-05 103_[+2]_9 chr2R:14480980-14481100 0.00011 106_[+2]_6 chr2R:20603267-20603387 0.00011 33_[+2]_79 chr3L:1976890-1977010 0.00011 103_[+2]_9 chr2R:7407826-7407946 0.00011 41_[+2]_71 chr4:697569-697689 0.00011 83_[+2]_29 chr3L:3078949-3079069 0.00013 88_[+2]_24 chr2R:11679320-11679440 0.00013 40_[+2]_72 chr3L:1576522-1576642 0.00013 16_[+2]_96 chr3R:10350053-10350173 0.00016 64_[+2]_48 chrX:3719793-3719913 0.00016 37_[+2]_75 chrX:9431542-9431662 0.00016 46_[+2]_66 chr2L:18136698-18136818 0.00017 15_[+2]_97 chr3R:29891320-29891440 0.00017 18_[+2]_94 chr3L:14804755-14804875 0.00017 46_[+2]_66 chr2R:7012103-7012223 0.00019 88_[+2]_24 chr3R:17670842-17670962 0.0002 6_[+2]_106 chrX:796638-796758 0.0002 18_[+2]_94 chr3R:13804160-13804280 0.00021 96_[+2]_16 chr3L:12350426-12350546 0.00022 17_[+2]_95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGYYGCCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HGYYGCCA width=8 seqs=41 chrX:16573780-16573900 ( 100) CGCCGCCA 1 chr2L:13082305-13082425 ( 98) AGCCGCCA 1 chr2L:20638612-20638732 ( 77) AGCCGCCA 1 chr2L:4928511-4928631 ( 81) CGCCGCCG 1 chr2L:4936446-4936566 ( 82) AGCCGCCG 1 chr2L:1043745-1043865 ( 38) AGCCGCCG 1 chr2R:17412637-17412757 ( 50) AGCTGCCA 1 chr4:68713-68833 ( 107) AGCTGCCA 1 chr3R:21187942-21188062 ( 112) CGGCGCCA 1 chr3R:20252608-20252728 ( 45) CGGCGCCA 1 chr3R:26261523-26261643 ( 41) CGTCGCCG 1 chrX:7323774-7323894 ( 52) TGCTGCCA 1 chr3R:16656195-16656315 ( 37) TGCTGCCA 1 chrX:18082877-18082997 ( 89) TGTCGCCA 1 chr2R:10739827-10739947 ( 89) CGTTGCCA 1 chr3R:20273709-20273829 ( 10) TGTCGCCA 1 chr3R:22639555-22639675 ( 65) CGTTGCCA 1 chr2L:1724386-1724506 ( 26) AGGCGCCA 1 chr3R:23722117-23722237 ( 79) AGCCGGCA 1 chr3R:30802277-30802397 ( 54) AGTCGCCG 1 chr3R:16260516-16260636 ( 9) TGCTGCCG 1 chrX:6524340-6524460 ( 104) TGCTGCCG 1 chr2R:14480980-14481100 ( 107) AGTTGCCA 1 chr2R:20603267-20603387 ( 34) TGGCGCCA 1 chr3L:1976890-1977010 ( 104) CGCTGGCA 1 chr2R:7407826-7407946 ( 42) CGTTGCCG 1 chr4:697569-697689 ( 84) AGTTGCCA 1 chr3L:3078949-3079069 ( 89) TGTTGCCA 1 chr2R:11679320-11679440 ( 41) TGTTGCCA 1 chr3L:1576522-1576642 ( 17) TGTTGCCA 1 chr3R:10350053-10350173 ( 65) CGGTGCCG 1 chrX:3719793-3719913 ( 38) CGCTGGCG 1 chrX:9431542-9431662 ( 47) AGCTGGCA 1 chr2L:18136698-18136818 ( 16) CGGCGGCA 1 chr3R:29891320-29891440 ( 19) AGTCGGCA 1 chr3L:14804755-14804875 ( 47) AGTCGGCA 1 chr2R:7012103-7012223 ( 89) TGCTGGCA 1 chr3R:17670842-17670962 ( 7) TGTCGGCA 1 chrX:796638-796758 ( 19) GGCTGCCA 1 chr3R:13804160-13804280 ( 97) GGTCGCCA 1 chr3L:12350426-12350546 ( 18) AGTCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGYYGCCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9173 E= 7.5e+000 19 70 -188 -13 -1200 -1200 248 -1200 -1200 129 -29 37 -1200 151 -1200 60 -1200 -1200 248 -1200 -1200 207 45 -1200 -1200 248 -1200 -1200 119 -1200 58 -1200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGYYGCCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 7.5e+000 0.365854 0.292683 0.048780 0.292683 0.000000 0.000000 1.000000 0.000000 0.000000 0.439024 0.146341 0.414634 0.000000 0.512195 0.000000 0.487805 0.000000 0.000000 1.000000 0.000000 0.000000 0.756098 0.243902 0.000000 0.000000 1.000000 0.000000 0.000000 0.731707 0.000000 0.268293 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGYYGCCA MEME-2 regular expression -------------------------------------------------------------------------------- [ACT]G[CT][CT]G[CG]C[AG] -------------------------------------------------------------------------------- Time 13.68 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCVCACS MEME-3 width = 8 sites = 23 llr = 212 E-value = 1.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCVCACS MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::3:7:2 pos.-specific C 3aa4a1a4 probability G 7::3:::4 matrix T :::::2:: bits 2.5 ** * 2.2 ** * * 2.0 ** * * 1.7 ** * * Relative 1.5 *** * * Entropy 1.2 *** * * (13.3 bits) 1.0 *** * * 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCCCACC consensus C A T G sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCVCACS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:18136698-18136818 1 3.89e-06 . GCCCCACG ACAAAAGCGG chr3R:30802277-30802397 95 3.89e-06 AAACATCTCG GCCCCACG CGCCAAATCC chr2R:14480980-14481100 74 7.75e-06 TTCACTGTTA GCCGCACG CTCTGTTAAC chr2L:4936446-4936566 4 7.75e-06 TTT GCCGCACG CGAGGCACAA chr3L:9968374-9968494 102 1.12e-05 CCCACAAGCA GCCACACC AATCCCAAAG chr2R:11679320-11679440 9 1.12e-05 TCAGTGTG GCCACACC AAAACAAGGG chr3R:23820462-23820582 91 1.12e-05 CGCGAGTGCA GCCACACC AAAAGCGAAT chr2R:25253211-25253331 113 1.12e-05 CAAAGAGAAA GCCACACC chr3L:14804755-14804875 74 1.66e-05 CTTTGCAAAC CCCCCACC CCCCCTGGCG chr3R:10100659-10100779 64 1.66e-05 AAATCACCCC CCCCCACC CCATCACACA chr3L:3770962-3771082 72 3.63e-05 ATTGCATCTT CCCACACC GAGCAGTTAA chr2L:1094811-1094931 70 3.63e-05 TGCACTGTTT GCCCCCCC TCCTCCCCCC chr2L:8692557-8692677 109 3.63e-05 AAACTGTCTC GCCCCACA CTCG chr2R:20603267-20603387 71 4.28e-05 AACTTTTGTG GCCCCCCG TTGGGCGCCA chr2L:13882063-13882183 1 4.28e-05 . GCCGCTCG TGCACTCAGC chr3R:21176732-21176852 88 4.63e-05 CTCCATTTCC GCCACTCC CTGAAAAACT chr3L:4353821-4353941 87 5.43e-05 AATGTCGCAT GCCGCACA CAGCGAAAAA chr2L:20148487-20148607 54 6.74e-05 ACAGGCAAAT GCCACACA GGAGACGGGC chr3L:3801436-3801556 24 7.59e-05 ATCTGAGCAC CCCCCACA TGAAAGTTCA chr3R:20252608-20252728 37 7.89e-05 TTTGGTTGCA CCCGCTCG CGGCGCCAGT chrX:1399756-1399876 15 7.89e-05 ATGTCGTTGT CCCGCTCG CACTGCGGCC chr2L:6971858-6971978 53 9.39e-05 TGCCCCTTTT CCCACTCG CGTTCAATTG chr3R:25870523-25870643 76 1.10e-04 GGTTTTGTGT GCCCGACC AACCACCGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCVCACS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:18136698-18136818 3.9e-06 [+3]_112 chr3R:30802277-30802397 3.9e-06 94_[+3]_18 chr2R:14480980-14481100 7.7e-06 73_[+3]_39 chr2L:4936446-4936566 7.7e-06 3_[+3]_109 chr3L:9968374-9968494 1.1e-05 101_[+3]_11 chr2R:11679320-11679440 1.1e-05 8_[+3]_104 chr3R:23820462-23820582 1.1e-05 90_[+3]_22 chr2R:25253211-25253331 1.1e-05 112_[+3] chr3L:14804755-14804875 1.7e-05 73_[+3]_39 chr3R:10100659-10100779 1.7e-05 63_[+3]_49 chr3L:3770962-3771082 3.6e-05 71_[+3]_41 chr2L:1094811-1094931 3.6e-05 69_[+3]_43 chr2L:8692557-8692677 3.6e-05 108_[+3]_4 chr2R:20603267-20603387 4.3e-05 70_[+3]_42 chr2L:13882063-13882183 4.3e-05 [+3]_112 chr3R:21176732-21176852 4.6e-05 87_[+3]_25 chr3L:4353821-4353941 5.4e-05 86_[+3]_26 chr2L:20148487-20148607 6.7e-05 53_[+3]_59 chr3L:3801436-3801556 7.6e-05 23_[+3]_89 chr3R:20252608-20252728 7.9e-05 36_[+3]_76 chrX:1399756-1399876 7.9e-05 14_[+3]_98 chr2L:6971858-6971978 9.4e-05 52_[+3]_60 chr3R:25870523-25870643 0.00011 75_[+3]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCVCACS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCVCACS width=8 seqs=23 chr2L:18136698-18136818 ( 1) GCCCCACG 1 chr3R:30802277-30802397 ( 95) GCCCCACG 1 chr2R:14480980-14481100 ( 74) GCCGCACG 1 chr2L:4936446-4936566 ( 4) GCCGCACG 1 chr3L:9968374-9968494 ( 102) GCCACACC 1 chr2R:11679320-11679440 ( 9) GCCACACC 1 chr3R:23820462-23820582 ( 91) GCCACACC 1 chr2R:25253211-25253331 ( 113) GCCACACC 1 chr3L:14804755-14804875 ( 74) CCCCCACC 1 chr3R:10100659-10100779 ( 64) CCCCCACC 1 chr3L:3770962-3771082 ( 72) CCCACACC 1 chr2L:1094811-1094931 ( 70) GCCCCCCC 1 chr2L:8692557-8692677 ( 109) GCCCCACA 1 chr2R:20603267-20603387 ( 71) GCCCCCCG 1 chr2L:13882063-13882183 ( 1) GCCGCTCG 1 chr3R:21176732-21176852 ( 88) GCCACTCC 1 chr3L:4353821-4353941 ( 87) GCCGCACA 1 chr2L:20148487-20148607 ( 54) GCCACACA 1 chr3L:3801436-3801556 ( 24) CCCCCACA 1 chr3R:20252608-20252728 ( 37) CCCGCTCG 1 chrX:1399756-1399876 ( 15) CCCGCTCG 1 chr2L:6971858-6971978 ( 53) CCCACTCG 1 chr3R:25870523-25870643 ( 76) GCCCGACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCVCACS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.326 E= 1.3e+003 -1117 76 196 -1117 -1117 248 -1117 -1117 -1117 248 -1117 -1117 12 112 54 -1117 -1117 241 -204 -1117 112 -105 -1117 -56 -1117 248 -1117 -1117 -88 127 113 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCVCACS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.3e+003 0.000000 0.304348 0.695652 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.347826 0.391304 0.260870 0.000000 0.000000 0.956522 0.043478 0.000000 0.695652 0.086957 0.000000 0.217391 0.000000 1.000000 0.000000 0.000000 0.173913 0.434783 0.391304 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCVCACS MEME-3 regular expression -------------------------------------------------------------------------------- [GC]CC[CAG]C[AT]C[CG] -------------------------------------------------------------------------------- Time 19.88 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCGCTC MEME-4 width = 8 sites = 4 llr = 50 E-value = 4.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCGCTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::a:a:a probability G :aa:a::: matrix T a:::::a: bits 2.5 ***** * 2.2 ***** * 2.0 ***** * 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (18.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGCGCTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23722117-23722237 53 3.45e-06 AGTCAACAGA TGGCGCTC TAAAATCTTT chr2L:12546743-12546863 85 3.45e-06 AGCGCAACAT TGGCGCTC GTTTTTCCAT chr3R:10100659-10100779 94 3.45e-06 GGCCAGAAGG TGGCGCTC GATGCGACAA chr3R:18296252-18296372 111 3.45e-06 TCGGCAAATT TGGCGCTC TA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23722117-23722237 3.4e-06 52_[+4]_60 chr2L:12546743-12546863 3.4e-06 84_[+4]_28 chr3R:10100659-10100779 3.4e-06 93_[+4]_19 chr3R:18296252-18296372 3.4e-06 110_[+4]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCGCTC width=8 seqs=4 chr3R:23722117-23722237 ( 53) TGGCGCTC 1 chr2L:12546743-12546863 ( 85) TGGCGCTC 1 chr3R:10100659-10100779 ( 94) TGGCGCTC 1 chr3R:18296252-18296372 ( 111) TGGCGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 4.4e+004 -865 -865 -865 164 -865 -865 248 -865 -865 -865 248 -865 -865 247 -865 -865 -865 -865 248 -865 -865 247 -865 -865 -865 -865 -865 164 -865 247 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.4e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCTC MEME-4 regular expression -------------------------------------------------------------------------------- TGGCGCTC -------------------------------------------------------------------------------- Time 25.98 secs. ******************************************************************************** ******************************************************************************** MOTIF SCCWGCAC MEME-5 width = 8 sites = 10 llr = 106 E-value = 1.5e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCCWGCAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::6::a: pos.-specific C 47a::a:a probability G 63::a::: matrix T :::4:::: bits 2.5 * ** * 2.2 * ** * 2.0 * ** * 1.7 * **** Relative 1.5 *** **** Entropy 1.2 *** **** (15.3 bits) 1.0 *** **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCAGCAC consensus CG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCWGCAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21246591-21246711 101 3.44e-06 TTACGCAAGT GCCAGCAC TTACGGGCAC chr2R:7407826-7407946 96 3.44e-06 TGCGCTCTTA GCCAGCAC TCCAACCACA chr3L:17474964-17475084 6 6.90e-06 TGGTG GCCTGCAC TTAGCTTCTG chr3R:14479766-14479886 3 1.04e-05 CA CCCAGCAC AAGTGTTTCG chr2R:8734624-8734744 32 1.04e-05 TTATTAAATT CCCAGCAC TGACTGAAGA chr2L:2872723-2872843 85 1.38e-05 CCCACTGATA CCCTGCAC TGAGGTATTC chr2R:12218861-12218981 13 1.38e-05 TGCGTGTGCG CCCTGCAC TGGCAAaaat chr3R:17670842-17670962 44 1.73e-05 CCTTGGATGT GGCAGCAC TGCCAAAATA chr2R:17412637-17412757 98 1.73e-05 CGAATAATGT GGCAGCAC TAGTTATCGA chr3L:2244151-2244271 54 2.07e-05 CATACTTTTG GGCTGCAC GTATCTGCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCWGCAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21246591-21246711 3.4e-06 100_[+5]_12 chr2R:7407826-7407946 3.4e-06 95_[+5]_17 chr3L:17474964-17475084 6.9e-06 5_[+5]_107 chr3R:14479766-14479886 1e-05 2_[+5]_110 chr2R:8734624-8734744 1e-05 31_[+5]_81 chr2L:2872723-2872843 1.4e-05 84_[+5]_28 chr2R:12218861-12218981 1.4e-05 12_[+5]_100 chr3R:17670842-17670962 1.7e-05 43_[+5]_69 chr2R:17412637-17412757 1.7e-05 97_[+5]_15 chr3L:2244151-2244271 2.1e-05 53_[+5]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCWGCAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCCWGCAC width=8 seqs=10 chr3R:21246591-21246711 ( 101) GCCAGCAC 1 chr2R:7407826-7407946 ( 96) GCCAGCAC 1 chr3L:17474964-17475084 ( 6) GCCTGCAC 1 chr3R:14479766-14479886 ( 3) CCCAGCAC 1 chr2R:8734624-8734744 ( 32) CCCAGCAC 1 chr2L:2872723-2872843 ( 85) CCCTGCAC 1 chr2R:12218861-12218981 ( 13) CCCTGCAC 1 chr3R:17670842-17670962 ( 44) GGCAGCAC 1 chr2R:17412637-17412757 ( 98) GGCAGCAC 1 chr3L:2244151-2244271 ( 54) GGCTGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCWGCAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 1.5e+005 -997 115 174 -997 -997 196 74 -997 -997 248 -997 -997 91 -997 -997 32 -997 -997 248 -997 -997 248 -997 -997 164 -997 -997 -997 -997 248 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCWGCAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.5e+005 0.000000 0.400000 0.600000 0.000000 0.000000 0.700000 0.300000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.000000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCWGCAC MEME-5 regular expression -------------------------------------------------------------------------------- [GC][CG]C[AT]GCAC -------------------------------------------------------------------------------- Time 32.10 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:1243471-1243591 9.90e-01 120 chr4:834988-835108 5.51e-01 120 chr4:979979-980099 4.41e-02 120 chr2R:1243719-1243839 8.93e-01 120 chr4:68713-68833 4.75e-03 106_[+2(2.88e-05)]_6 chr3R:3374279-3374399 8.80e-01 120 chr2L:3755263-3755383 1.00e+00 120 chrX:4956076-4956196 1.96e-01 120 chr3R:25870523-25870643 1.91e-01 120 chr4:697569-697689 1.64e-01 120 chr2R:13909067-13909187 7.81e-01 120 chr3R:18508400-18508520 7.12e-01 120 chr3R:24544434-24544554 1.09e-01 120 chr3R:9784505-9784625 4.02e-03 120 chrX:9431542-9431662 4.61e-01 120 chr2L:1043745-1043865 7.40e-02 37_[+2(1.88e-05)]_75 chr2R:15155109-15155229 9.76e-01 120 chr3R:25968669-25968789 1.00e+00 120 chr3R:28959297-28959417 9.24e-01 120 chr3R:17526198-17526318 9.89e-01 120 chr2L:540693-540813 4.57e-01 120 chr2R:25183077-25183197 1.10e-01 120 chr2L:5085000-5085120 5.12e-01 120 chr2R:22033375-22033495 5.14e-01 120 chr2R:18605462-18605582 4.48e-01 120 chr2R:25253211-25253331 1.30e-01 112_[+3(1.12e-05)] chr2R:20270978-20271098 8.59e-01 120 chr3R:30198962-30199082 2.31e-01 120 chr3R:31363747-31363867 9.63e-01 120 chr2L:4936446-4936566 1.02e-05 3_[+3(7.75e-06)]_70_[+2(1.88e-05)]_\ 31 chr2R:7407826-7407946 6.80e-05 95_[+5(3.44e-06)]_17 chr3L:2913410-2913530 9.95e-01 120 chr2L:9779200-9779320 1.92e-01 120 chr3L:17791647-17791767 9.49e-01 120 chr3R:22639555-22639675 1.08e-02 64_[+2(5.92e-05)]_48 chr2L:1619302-1619422 7.37e-01 120 chr3R:18296252-18296372 1.29e-02 110_[+4(3.45e-06)]_2 chr3L:17447988-17448108 1.00e+00 120 chr3R:7217316-7217436 4.37e-01 120 chr2L:4928511-4928631 3.99e-03 34_[+2(7.51e-05)]_38_[+2(6.47e-06)]_\ 32 chr3R:12712592-12712712 3.12e-01 120 chr2R:17098556-17098676 5.06e-02 120 chr2L:1207588-1207708 9.79e-01 120 chrX:3282097-3282217 1.15e-02 11_[+1(3.18e-06)]_101 chr2R:9756268-9756388 8.98e-01 120 chr3L:19961903-19962023 8.50e-01 120 chr2R:22789399-22789519 6.05e-01 120 chr2L:2015405-2015525 4.14e-01 120 chr2R:24139200-24139320 8.71e-01 120 chr2L:1135611-1135731 8.59e-01 120 chr2L:6088945-6089065 9.98e-01 120 chr3R:7821726-7821846 3.39e-01 120 chr2L:21397347-21397467 9.01e-01 120 chr3L:21321975-21322095 9.73e-01 120 chr3L:2244151-2244271 6.57e-03 53_[+5(2.07e-05)]_59 chr2L:13882063-13882183 8.01e-02 [+3(4.28e-05)]_112 chr3R:20273709-20273829 1.37e-01 9_[+2(5.92e-05)]_103 chr2R:15480315-15480435 3.48e-01 120 chr3R:5217465-5217585 4.63e-02 120 chr2L:1637981-1638101 4.45e-01 120 chr3R:13803949-13804069 9.96e-01 120 chr3R:8577730-8577850 1.00e+00 120 chr3R:5746786-5746906 5.41e-01 120 chr2R:15532258-15532378 2.56e-01 120 chr2L:20638612-20638732 3.41e-08 76_[+2(6.47e-06)]_8_[+1(3.18e-06)]_\ 20 chr3R:30802277-30802397 3.66e-06 17_[+1(7.20e-06)]_28_[+2(7.51e-05)]_\ 33_[+3(3.89e-06)]_18 chr3L:19087982-19088102 9.55e-01 120 chr3R:16656195-16656315 1.93e-02 36_[+2(4.69e-05)]_76 chrX:20797642-20797762 7.21e-01 120 chr2L:1987919-1988039 3.81e-01 120 chr2L:9864430-9864550 5.24e-01 120 chr3R:23820462-23820582 2.11e-03 90_[+3(1.12e-05)]_22 chr2R:8734624-8734744 4.22e-02 31_[+5(1.04e-05)]_81 chrX:5408993-5409113 3.29e-03 112_[+1(3.18e-06)] chrX:8112825-8112945 8.78e-01 120 chr3L:20221512-20221632 9.19e-01 120 chr3L:1976890-1977010 3.54e-01 120 chr3R:24102578-24102698 9.74e-01 120 chr3R:17404299-17404419 9.13e-01 120 chr2L:17558226-17558346 9.65e-01 120 chr3R:10699213-10699333 9.89e-01 120 chr2L:6971858-6971978 1.62e-02 52_[+3(9.39e-05)]_60 chr3L:19847086-19847206 6.73e-01 120 chr3L:5182388-5182508 1.00e+00 120 chr2R:17412637-17412757 1.08e-03 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chr2L:3373394-3373514 1.39e-01 120 chr2L:4454461-4454581 4.38e-01 120 chr2R:22162311-22162431 6.34e-01 120 chr2R:17848918-17849038 9.13e-01 120 chr3L:2845305-2845425 8.64e-01 120 chr2R:9388577-9388697 4.31e-01 120 chr2R:9541718-9541838 8.14e-01 120 chr3R:26121249-26121369 9.85e-01 120 chr2L:1142824-1142944 1.22e-01 120 chrX:8542108-8542228 4.54e-01 120 chr3L:3543854-3543974 2.11e-02 120 chr2R:14480980-14481100 6.82e-04 73_[+3(7.75e-06)]_39 chr3L:15034465-15034585 9.54e-01 120 chr2R:4012768-4012888 4.91e-01 120 chrX:759131-759251 1.15e-01 120 chr3R:30889079-30889199 6.93e-01 120 chr3L:3078949-3079069 3.13e-01 120 chr3L:3770962-3771082 2.42e-02 71_[+3(3.63e-05)]_41 chr2R:22062432-22062552 4.89e-01 120 chr3R:21246591-21246711 9.79e-03 100_[+5(3.44e-06)]_12 chr2R:11178506-11178626 3.25e-01 120 chr3R:21176732-21176852 6.73e-03 87_[+3(4.63e-05)]_25 chrX:10573636-10573756 8.09e-01 120 chr2R:8002314-8002434 1.00e+00 120 chrX:11081322-11081442 1.00e+00 120 chr2R:12035171-12035291 9.74e-01 120 chr3L:15814172-15814292 2.34e-01 120 chr2R:12593478-12593598 2.49e-01 120 chr2L:540894-541014 1.51e-01 120 chr2L:12372592-12372712 3.04e-01 120 chr3R:23214838-23214958 7.14e-01 120 chrX:4262811-4262931 9.40e-01 120 chr2L:18136698-18136818 5.90e-04 [+3(3.89e-06)]_112 chr3R:19924485-19924605 6.96e-01 120 chrX:19348980-19349100 9.87e-01 120 chr2L:20715158-20715278 9.82e-01 120 chr2L:1724386-1724506 2.47e-02 25_[+2(7.51e-05)]_87 chr2L:10565826-10565946 9.74e-01 120 chr3L:9968374-9968494 1.71e-04 84_[+4(1.80e-05)]_9_[+3(1.12e-05)]_\ 11 chr3L:8689815-8689935 6.69e-01 120 chr2L:11199204-11199324 9.92e-01 120 chr3L:13356189-13356309 4.61e-01 120 chr2R:24657140-24657260 6.78e-01 120 chrX:20503285-20503405 7.84e-01 120 chr2R:16551964-16552084 8.06e-02 120 chr2L:2373965-2374085 6.23e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************