******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/HmgZ.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:16351201-16351321 1.0000 120 chr3R:9784473-9784593 1.0000 120 chr2R:21687610-21687730 1.0000 120 chr3L:9094984-9095104 1.0000 120 chr2R:21714744-21714864 1.0000 120 chr2R:21078434-21078554 1.0000 120 chr3L:1206786-1206906 1.0000 120 chr3L:16930625-16930745 1.0000 120 chr3R:21163403-21163523 1.0000 120 chr2L:3108421-3108541 1.0000 120 chr3L:11523494-11523614 1.0000 120 chr2R:9972783-9972903 1.0000 120 chr3L:1188946-1189066 1.0000 120 chr2L:14588990-14589110 1.0000 120 chr3L:5749764-5749884 1.0000 120 chr2R:13861911-13862031 1.0000 120 chr2R:21685210-21685330 1.0000 120 chr3R:6170847-6170967 1.0000 120 chr3R:16041083-16041203 1.0000 120 chr3R:26540550-26540670 1.0000 120 chr3L:12794695-12794815 1.0000 120 chr3L:14674143-14674263 1.0000 120 chr3R:16260491-16260611 1.0000 120 chr3R:16978041-16978161 1.0000 120 chr2L:6914138-6914258 1.0000 120 chr2R:13935616-13935736 1.0000 120 chr2R:25183040-25183160 1.0000 120 chrX:17820372-17820492 1.0000 120 chr3L:4242613-4242733 1.0000 120 chrX:8242446-8242566 1.0000 120 chrX:2161111-2161231 1.0000 120 chr2L:12455153-12455273 1.0000 120 chr2R:18523966-18524086 1.0000 120 chr2R:8396765-8396885 1.0000 120 chr2L:8709603-8709723 1.0000 120 chr4:557974-558094 1.0000 120 chr3R:27905912-27906032 1.0000 120 chr2L:16879373-16879493 1.0000 120 chr3L:18026102-18026222 1.0000 120 chr3L:339147-339267 1.0000 120 chr2L:8943269-8943389 1.0000 120 chr3L:19268890-19269010 1.0000 120 chr3R:29116293-29116413 1.0000 120 chr3R:9793248-9793368 1.0000 120 chr3R:26103548-26103668 1.0000 120 chr2L:19580405-19580525 1.0000 120 chr2R:23864711-23864831 1.0000 120 chr2L:4345877-4345997 1.0000 120 chr2L:11280218-11280338 1.0000 120 chrX:16323202-16323322 1.0000 120 chr3R:12222208-12222328 1.0000 120 chr3L:17470205-17470325 1.0000 120 chr2R:16689588-16689708 1.0000 120 chr2R:18167177-18167297 1.0000 120 chr2R:24313262-24313382 1.0000 120 chr2R:7785923-7786043 1.0000 120 chrX:7679015-7679135 1.0000 120 chr2R:14860733-14860853 1.0000 120 chr3R:24650050-24650170 1.0000 120 chr3R:16050695-16050815 1.0000 120 chr2L:12520394-12520514 1.0000 120 chr3R:4962770-4962890 1.0000 120 chr3R:23127980-23128100 1.0000 120 chrX:15320181-15320301 1.0000 120 chr3L:3905235-3905355 1.0000 120 chr3R:25245543-25245663 1.0000 120 chr2R:12569816-12569936 1.0000 120 chr2R:24687365-24687485 1.0000 120 chr2L:18147704-18147824 1.0000 120 chr3R:6660092-6660212 1.0000 120 chr3L:16981397-16981517 1.0000 120 chrX:12012277-12012397 1.0000 120 chr3L:15524080-15524200 1.0000 120 chr2L:2376304-2376424 1.0000 120 chr3L:17465880-17466000 1.0000 120 chr2L:404092-404212 1.0000 120 chr2R:12955854-12955974 1.0000 120 chr2R:21519114-21519234 1.0000 120 chr2R:24779855-24779975 1.0000 120 chr3R:10099528-10099648 1.0000 120 chr3L:9096820-9096940 1.0000 120 chr3R:9008376-9008496 1.0000 120 chr2L:19542305-19542425 1.0000 120 chr3R:25097568-25097688 1.0000 120 chr3R:20908793-20908913 1.0000 120 chr2R:10838663-10838783 1.0000 120 chr2R:12518975-12519095 1.0000 120 chrX:8145618-8145738 1.0000 120 chr2L:4949780-4949900 1.0000 120 chr3R:25652239-25652359 1.0000 120 chr2R:15537957-15538077 1.0000 120 chr3R:13309261-13309381 1.0000 120 chr2L:12040649-12040769 1.0000 120 chr2R:14618072-14618192 1.0000 120 chr3L:342947-343067 1.0000 120 chr3L:18618238-18618358 1.0000 120 chr2R:9133360-9133480 1.0000 120 chrX:2125679-2125799 1.0000 120 chr3L:22461077-22461197 1.0000 120 chrX:6824275-6824395 1.0000 120 chr2L:12093680-12093800 1.0000 120 chr3L:871841-871961 1.0000 120 chr2L:19166113-19166233 1.0000 120 chr3L:8338961-8339081 1.0000 120 chr2R:14175617-14175737 1.0000 120 chr2R:13509511-13509631 1.0000 120 chr3R:11822439-11822559 1.0000 120 chr2R:7539653-7539773 1.0000 120 chr3R:24938201-24938321 1.0000 120 chr3L:18828437-18828557 1.0000 120 chr2R:10886700-10886820 1.0000 120 chr2R:16344435-16344555 1.0000 120 chr3R:15291754-15291874 1.0000 120 chr3R:29857475-29857595 1.0000 120 chr2R:21011873-21011993 1.0000 120 chr3L:5563680-5563800 1.0000 120 chr3L:3942331-3942451 1.0000 120 chr3L:16351945-16352065 1.0000 120 chr2L:4973842-4973962 1.0000 120 chr3L:15835287-15835407 1.0000 120 chr2R:24337648-24337768 1.0000 120 chrX:13370940-13371060 1.0000 120 chr2L:821296-821416 1.0000 120 chr3L:15161688-15161808 1.0000 120 chr3R:7515819-7515939 1.0000 120 chr3L:5753063-5753183 1.0000 120 chr2R:16322129-16322249 1.0000 120 chr3L:21892299-21892419 1.0000 120 chrX:15749054-15749174 1.0000 120 chrX:2184657-2184777 1.0000 120 chr3R:18283594-18283714 1.0000 120 chr2L:6622747-6622867 1.0000 120 chr3R:19903389-19903509 1.0000 120 chr3R:8938553-8938673 1.0000 120 chr2L:13296206-13296326 1.0000 120 chr3L:19169194-19169314 1.0000 120 chr3R:5463475-5463595 1.0000 120 chr2L:14348748-14348868 1.0000 120 chr3L:17616968-17617088 1.0000 120 chr2R:21160503-21160623 1.0000 120 chrX:19605173-19605293 1.0000 120 chr2R:23062567-23062687 1.0000 120 chr4:68692-68812 1.0000 120 chr2L:13813726-13813846 1.0000 120 chr3R:5358154-5358274 1.0000 120 chr3R:21118854-21118974 1.0000 120 chrX:7722038-7722158 1.0000 120 chr3R:26912854-26912974 1.0000 120 chr3R:15993250-15993370 1.0000 120 chr2L:10437468-10437588 1.0000 120 chr3R:9020014-9020134 1.0000 120 chr3R:22447343-22447463 1.0000 120 chr4:697589-697709 1.0000 120 chr3L:18022562-18022682 1.0000 120 chrX:6291203-6291323 1.0000 120 chr2R:8106296-8106416 1.0000 120 chr3L:19914919-19915039 1.0000 120 chr3L:17474920-17475040 1.0000 120 chrX:8588779-8588899 1.0000 120 chr3R:8340984-8341104 1.0000 120 chr2R:17098559-17098679 1.0000 120 chr3R:9006237-9006357 1.0000 120 chrX:11709940-11710060 1.0000 120 chrX:9283082-9283202 1.0000 120 chr3R:9003917-9004037 1.0000 120 chr2L:143208-143328 1.0000 120 chrX:15835482-15835602 1.0000 120 chrX:2073431-2073551 1.0000 120 chrX:17305674-17305794 1.0000 120 chrX:16547560-16547680 1.0000 120 chr3L:19040282-19040402 1.0000 120 chr3L:18901515-18901635 1.0000 120 chr3L:10690978-10691098 1.0000 120 chr2R:25253222-25253342 1.0000 120 chr2L:453008-453128 1.0000 120 chr2R:23988410-23988530 1.0000 120 chr3R:9932543-9932663 1.0000 120 chrX:1033200-1033320 1.0000 120 chr2R:16551975-16552095 1.0000 120 chr2R:23882384-23882504 1.0000 120 chr2R:9252029-9252149 1.0000 120 chr2L:21221174-21221294 1.0000 120 chr2L:2009762-2009882 1.0000 120 chrX:1399803-1399923 1.0000 120 chr2R:12198832-12198952 1.0000 120 chr3L:9762240-9762360 1.0000 120 chr2R:8131302-8131422 1.0000 120 chr2R:23043037-23043157 1.0000 120 chr3L:17352939-17353059 1.0000 120 chr2L:10298476-10298596 1.0000 120 chr3R:23348031-23348151 1.0000 120 chr2L:9887939-9888059 1.0000 120 chr2R:23551191-23551311 1.0000 120 chrX:19601780-19601900 1.0000 120 chr3L:1652865-1652985 1.0000 120 chr2L:13829747-13829867 1.0000 120 chr2L:18951804-18951924 1.0000 120 chrX:2720263-2720383 1.0000 120 chr3L:11711307-11711427 1.0000 120 chrX:6820911-6821031 1.0000 120 chr2L:6467671-6467791 1.0000 120 chr3L:324681-324801 1.0000 120 chr2R:24797420-24797540 1.0000 120 chr3R:13078414-13078534 1.0000 120 chr3R:27151588-27151708 1.0000 120 chr3R:31213392-31213512 1.0000 120 chr3R:11220073-11220193 1.0000 120 chr3L:11772701-11772821 1.0000 120 chr3L:11681924-11682044 1.0000 120 chr3R:8009268-8009388 1.0000 120 chr3L:15837416-15837536 1.0000 120 chr2R:16271940-16272060 1.0000 120 chr3R:21073293-21073413 1.0000 120 chr3R:4381197-4381317 1.0000 120 chr3L:4553527-4553647 1.0000 120 chr3R:16012069-16012189 1.0000 120 chr3L:17841291-17841411 1.0000 120 chr3R:12408226-12408346 1.0000 120 chr2R:22888902-22889022 1.0000 120 chr2L:6854023-6854143 1.0000 120 chr3R:23722076-23722196 1.0000 120 chr3R:24360122-24360242 1.0000 120 chr3L:5794107-5794227 1.0000 120 chr3R:5393884-5394004 1.0000 120 chr2R:13214635-13214755 1.0000 120 chr3L:17950523-17950643 1.0000 120 chr3R:31580715-31580835 1.0000 120 chr2R:8947351-8947471 1.0000 120 chr3R:12422724-12422844 1.0000 120 chr3L:20816004-20816124 1.0000 120 chr2R:13554012-13554132 1.0000 120 chr3R:16359256-16359376 1.0000 120 chr2L:6971852-6971972 1.0000 120 chr2R:16850325-16850445 1.0000 120 chr2L:3029173-3029293 1.0000 120 chr2R:12933942-12934062 1.0000 120 chr3R:23725871-23725991 1.0000 120 chrX:10472732-10472852 1.0000 120 chr3R:22487120-22487240 1.0000 120 chrX:1772740-1772860 1.0000 120 chr2L:19430496-19430616 1.0000 120 chr3L:17597059-17597179 1.0000 120 chr2R:23977246-23977366 1.0000 120 chr3R:6646778-6646898 1.0000 120 chr3L:199231-199351 1.0000 120 chr2L:102280-102400 1.0000 120 chr3L:6550296-6550416 1.0000 120 chrX:16446966-16447086 1.0000 120 chr3R:21629989-21630109 1.0000 120 chr3L:9134482-9134602 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_HmgZ/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/HmgZ.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.279 C 0.218 G 0.219 T 0.284 Background letter frequencies (from file dataset with add-one prior applied): A 0.279 C 0.218 G 0.219 T 0.284 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-1 width = 8 sites = 58 llr = 511 E-value = 5.2e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 39:::a18 pos.-specific C :::a:::: probability G :1::a::2 matrix T 7:a:::9: bits 2.2 ** 2.0 ** 1.8 **** 1.5 ***** Relative 1.3 ****** Entropy 1.1 ******* (12.7 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16446966-16447086 33 2.38e-05 ACAGTGGTGT TATCGATA TTTAATTGCG chr2L:102280-102400 105 2.38e-05 TGTTTTTATT TATCGATA GTGTCGGC chr2R:23977246-23977366 101 2.38e-05 AACTGCAAAC TATCGATA GGCAATTTCA chr2L:3029173-3029293 14 2.38e-05 CACCGAGACA TATCGATA TATTCGATAT chr2R:16850325-16850445 40 2.38e-05 GGCAGGGATG TATCGATA ACACAAATCA chr3L:20816004-20816124 97 2.38e-05 AAGTGAAACC TATCGATA TGAACGTGAC chr2R:13214635-13214755 57 2.38e-05 GCACCTGACT TATCGATA AGCAGCTGAT chr3R:12408226-12408346 104 2.38e-05 TTAGTTTGGT TATCGATA CCGCTGTTG chr3L:324681-324801 30 2.38e-05 TATTCCACAC TATCGATA ACTCCATAAA chrX:2720263-2720383 110 2.38e-05 GTTCGATGAT TATCGATA TTG chr2L:18951804-18951924 30 2.38e-05 GACTGGCAAC TATCGATA GTACTGTCGA chr2L:13829747-13829867 20 2.38e-05 TATTTCGTTA TATCGATA TTTTTCGATT chrX:19601780-19601900 53 2.38e-05 ACCACGGCAG TATCGATA TATCGAGCAC chr2R:8131302-8131422 79 2.38e-05 TACCGGCAGT TATCGATA GGTAAACCCA chrX:1033200-1033320 26 2.38e-05 GCGCCGATAC TATCGATA CAAGCCCAGT chr3L:10690978-10691098 32 2.38e-05 CTGCTTGGCC TATCGATA TGTATCGACT chr3L:18901515-18901635 106 2.38e-05 TTTCTTAGCC TATCGATA AGCGCAG chr3R:9003917-9004037 100 2.38e-05 AAACTTGTGA TATCGATA TTAAATGGAG chr3R:8340984-8341104 54 2.38e-05 ATCGATGTAT TATCGATA CATCGATGTC chr2R:8106296-8106416 64 2.38e-05 CAGCACTGCC TATCGATA TTGGTGTGAA chr3R:11822439-11822559 43 2.38e-05 TTTGCACTGT TATCGATA GTCTAGGACC chr2L:19542305-19542425 47 2.38e-05 TGGGTAAAAA TATCGATA TTCTGGCGAA chr3R:29116293-29116413 99 2.38e-05 GGTGTCCTCA TATCGATA GCGATAATAG chr2L:16879373-16879493 51 2.38e-05 GTGAGCTAAC TATCGATA TATCCATTAG chr3L:12794695-12794815 6 2.38e-05 CGCTC TATCGATA GTTGGCGCAA chr2R:21687610-21687730 58 2.38e-05 TTGCCGCAAC TATCGATA GCTGGCTGGG chr3R:22487120-22487240 49 4.71e-05 GCTTCCGTGA AATCGATA TTTTCTGACC chr2R:13554012-13554132 55 4.71e-05 CACCGGGTGG AATCGATA AACAATTACT chr3R:31213392-31213512 74 4.71e-05 GGCCAGCAAC AATCGATA ATTCTTATCC chr2R:23988410-23988530 63 4.71e-05 TCTAGGCAGC AATCGATA CCCAGAGCCA chrX:15835482-15835602 68 4.71e-05 TCAACATTCG AATCGATA TTTGTATCGC chr3L:19914919-19915039 11 4.71e-05 GGCCCCTAAA AATCGATA AGGTGAAAGT chr4:697589-697709 103 4.71e-05 GCTGAAGTCC AATCGATA CTACAAAATA chr3R:9020014-9020134 39 4.71e-05 GTGTATAGCA AATCGATA ACAATGCGCT chr3R:18283594-18283714 48 4.71e-05 GCGAAGAACA AATCGATA GAAACGGCTG chr3R:4381197-4381317 73 6.57e-05 CGACTATGCA TATCGATG CCTCTATCGC chrX:11709940-11710060 4 6.57e-05 TGC TATCGATG CATAGACATC chrX:7722038-7722158 39 6.57e-05 TAATAGCGCC TATCGATG ACGATCAAGA chr2R:21160503-21160623 88 6.57e-05 GATGAGATGC TATCGATG CTAGCTGTAA chr3R:24938201-24938321 99 6.57e-05 CTCCTACACA TATCGATG GGCGATAGGC chr3R:16359256-16359376 96 8.40e-05 AACGCGTGGT AATCGATG GGCAGCACTG chr2R:23551191-23551311 94 8.40e-05 GATGGCCACC AATCGATG ATTAGTGCTA chr2L:10437468-10437588 56 8.40e-05 GTGATAGTGC AATCGATG AATGTGCAGC chr2R:23062567-23062687 5 8.40e-05 AAAC AATCGATG TCCAACGAAA chr2L:8943269-8943389 88 8.40e-05 GGCGCAAATG AATCGATG GCTCTAAGTT chrX:13370940-13371060 20 1.07e-04 TATCGCCGTC TATCGAAA GTTTGGCTGC chr2R:13509511-13509631 52 1.07e-04 AATAGAGTGG TATCGAAA TGGAGCCGAT chr3L:15524080-15524200 72 1.07e-04 TAGTCAACTT TATCGAAA CCGATTCATC chr3R:16012069-16012189 37 1.26e-04 ATCGCATGTG TGTCGATA AGATAACCAA chr2R:21011873-21011993 24 1.26e-04 TACATAGCTC TGTCGATA ACTCCCATCG chr3L:8338961-8339081 68 1.26e-04 TGTTTAAAAA TGTCGATA ATGACTAGTA chr3L:871841-871961 26 1.44e-04 CCACCCTGGC CATCGATA GCACGCGCCG chr3L:6550296-6550416 78 1.67e-04 CGTGTGTAGA AATCGAAA TGGCAACTTC chrX:16547560-16547680 6 1.67e-04 ATGTT AATCGAAA GGGGCAACGC chr3L:17841291-17841411 68 1.85e-04 AGGCCGGTCA AGTCGATA GCACCGCCTC chr2L:4345877-4345997 55 2.04e-04 CTTTCGAATA TATCGAAG GGGTCGTGGC chr2R:10886700-10886820 29 2.37e-04 AGTGCCTGCT TACCGATA GACGCTGTAT chr3R:11220073-11220193 37 2.51e-04 GAGGTGGTTA CATCGATG ACGTCACAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16446966-16447086 2.4e-05 32_[+1]_80 chr2L:102280-102400 2.4e-05 104_[+1]_8 chr2R:23977246-23977366 2.4e-05 100_[+1]_12 chr2L:3029173-3029293 2.4e-05 13_[+1]_99 chr2R:16850325-16850445 2.4e-05 39_[+1]_73 chr3L:20816004-20816124 2.4e-05 96_[+1]_16 chr2R:13214635-13214755 2.4e-05 56_[+1]_56 chr3R:12408226-12408346 2.4e-05 103_[+1]_9 chr3L:324681-324801 2.4e-05 29_[+1]_83 chrX:2720263-2720383 2.4e-05 109_[+1]_3 chr2L:18951804-18951924 2.4e-05 29_[+1]_83 chr2L:13829747-13829867 2.4e-05 19_[+1]_93 chrX:19601780-19601900 2.4e-05 52_[+1]_60 chr2R:8131302-8131422 2.4e-05 78_[+1]_34 chrX:1033200-1033320 2.4e-05 25_[+1]_87 chr3L:10690978-10691098 2.4e-05 31_[+1]_81 chr3L:18901515-18901635 2.4e-05 105_[+1]_7 chr3R:9003917-9004037 2.4e-05 99_[+1]_13 chr3R:8340984-8341104 2.4e-05 53_[+1]_59 chr2R:8106296-8106416 2.4e-05 63_[+1]_49 chr3R:11822439-11822559 2.4e-05 42_[+1]_70 chr2L:19542305-19542425 2.4e-05 46_[+1]_66 chr3R:29116293-29116413 2.4e-05 98_[+1]_14 chr2L:16879373-16879493 2.4e-05 50_[+1]_62 chr3L:12794695-12794815 2.4e-05 5_[+1]_107 chr2R:21687610-21687730 2.4e-05 57_[+1]_55 chr3R:22487120-22487240 4.7e-05 48_[+1]_64 chr2R:13554012-13554132 4.7e-05 54_[+1]_58 chr3R:31213392-31213512 4.7e-05 73_[+1]_39 chr2R:23988410-23988530 4.7e-05 62_[+1]_50 chrX:15835482-15835602 4.7e-05 67_[+1]_45 chr3L:19914919-19915039 4.7e-05 10_[+1]_102 chr4:697589-697709 4.7e-05 102_[+1]_10 chr3R:9020014-9020134 4.7e-05 38_[+1]_74 chr3R:18283594-18283714 4.7e-05 47_[+1]_65 chr3R:4381197-4381317 6.6e-05 72_[+1]_40 chrX:11709940-11710060 6.6e-05 3_[+1]_109 chrX:7722038-7722158 6.6e-05 38_[+1]_74 chr2R:21160503-21160623 6.6e-05 87_[+1]_25 chr3R:24938201-24938321 6.6e-05 98_[+1]_14 chr3R:16359256-16359376 8.4e-05 95_[+1]_17 chr2R:23551191-23551311 8.4e-05 93_[+1]_19 chr2L:10437468-10437588 8.4e-05 55_[+1]_57 chr2R:23062567-23062687 8.4e-05 4_[+1]_108 chr2L:8943269-8943389 8.4e-05 87_[+1]_25 chrX:13370940-13371060 0.00011 19_[+1]_93 chr2R:13509511-13509631 0.00011 51_[+1]_61 chr3L:15524080-15524200 0.00011 71_[+1]_41 chr3R:16012069-16012189 0.00013 36_[+1]_76 chr2R:21011873-21011993 0.00013 23_[+1]_89 chr3L:8338961-8339081 0.00013 67_[+1]_45 chr3L:871841-871961 0.00014 25_[+1]_87 chr3L:6550296-6550416 0.00017 77_[+1]_35 chrX:16547560-16547680 0.00017 5_[+1]_107 chr3L:17841291-17841411 0.00019 67_[+1]_45 chr2L:4345877-4345997 0.0002 54_[+1]_58 chr2R:10886700-10886820 0.00024 28_[+1]_84 chr3R:11220073-11220193 0.00025 36_[+1]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=58 chrX:16446966-16447086 ( 33) TATCGATA 1 chr2L:102280-102400 ( 105) TATCGATA 1 chr2R:23977246-23977366 ( 101) TATCGATA 1 chr2L:3029173-3029293 ( 14) TATCGATA 1 chr2R:16850325-16850445 ( 40) TATCGATA 1 chr3L:20816004-20816124 ( 97) TATCGATA 1 chr2R:13214635-13214755 ( 57) TATCGATA 1 chr3R:12408226-12408346 ( 104) TATCGATA 1 chr3L:324681-324801 ( 30) TATCGATA 1 chrX:2720263-2720383 ( 110) TATCGATA 1 chr2L:18951804-18951924 ( 30) TATCGATA 1 chr2L:13829747-13829867 ( 20) TATCGATA 1 chrX:19601780-19601900 ( 53) TATCGATA 1 chr2R:8131302-8131422 ( 79) TATCGATA 1 chrX:1033200-1033320 ( 26) TATCGATA 1 chr3L:10690978-10691098 ( 32) TATCGATA 1 chr3L:18901515-18901635 ( 106) TATCGATA 1 chr3R:9003917-9004037 ( 100) TATCGATA 1 chr3R:8340984-8341104 ( 54) TATCGATA 1 chr2R:8106296-8106416 ( 64) TATCGATA 1 chr3R:11822439-11822559 ( 43) TATCGATA 1 chr2L:19542305-19542425 ( 47) TATCGATA 1 chr3R:29116293-29116413 ( 99) TATCGATA 1 chr2L:16879373-16879493 ( 51) TATCGATA 1 chr3L:12794695-12794815 ( 6) TATCGATA 1 chr2R:21687610-21687730 ( 58) TATCGATA 1 chr3R:22487120-22487240 ( 49) AATCGATA 1 chr2R:13554012-13554132 ( 55) AATCGATA 1 chr3R:31213392-31213512 ( 74) AATCGATA 1 chr2R:23988410-23988530 ( 63) AATCGATA 1 chrX:15835482-15835602 ( 68) AATCGATA 1 chr3L:19914919-19915039 ( 11) AATCGATA 1 chr4:697589-697709 ( 103) AATCGATA 1 chr3R:9020014-9020134 ( 39) AATCGATA 1 chr3R:18283594-18283714 ( 48) AATCGATA 1 chr3R:4381197-4381317 ( 73) TATCGATG 1 chrX:11709940-11710060 ( 4) TATCGATG 1 chrX:7722038-7722158 ( 39) TATCGATG 1 chr2R:21160503-21160623 ( 88) TATCGATG 1 chr3R:24938201-24938321 ( 99) TATCGATG 1 chr3R:16359256-16359376 ( 96) AATCGATG 1 chr2R:23551191-23551311 ( 94) AATCGATG 1 chr2L:10437468-10437588 ( 56) AATCGATG 1 chr2R:23062567-23062687 ( 5) AATCGATG 1 chr2L:8943269-8943389 ( 88) AATCGATG 1 chrX:13370940-13371060 ( 20) TATCGAAA 1 chr2R:13509511-13509631 ( 52) TATCGAAA 1 chr3L:15524080-15524200 ( 72) TATCGAAA 1 chr3R:16012069-16012189 ( 37) TGTCGATA 1 chr2R:21011873-21011993 ( 24) TGTCGATA 1 chr3L:8338961-8339081 ( 68) TGTCGATA 1 chr3L:871841-871961 ( 26) CATCGATA 1 chr3L:6550296-6550416 ( 78) AATCGAAA 1 chrX:16547560-16547680 ( 6) AATCGAAA 1 chr3L:17841291-17841411 ( 68) AGTCGATA 1 chr2L:4345877-4345997 ( 55) TATCGAAG 1 chr2R:10886700-10886820 ( 29) TACCGATA 1 chr3R:11220073-11220193 ( 37) CATCGATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.56683 E= 5.2e-027 7 -266 -1250 125 174 -1250 -167 -1250 -1250 -366 -1250 179 -1250 220 -1250 -1250 -1250 -1250 219 -1250 184 -1250 -1250 -1250 -143 -1250 -1250 166 151 -1250 -8 -1250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 5.2e-027 0.293103 0.034483 0.000000 0.672414 0.931034 0.000000 0.068966 0.000000 0.000000 0.017241 0.000000 0.982759 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.103448 0.000000 0.000000 0.896552 0.793103 0.000000 0.206897 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 regular expression -------------------------------------------------------------------------------- [TA]ATCGAT[AG] -------------------------------------------------------------------------------- Time 7.39 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTCACAC MEME-2 width = 8 sites = 31 llr = 291 E-value = 6.1e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::a:7: pos.-specific C :3:a:a1a probability G a73:::2: matrix T ::7::::: bits 2.2 * * * * 2.0 * * * * 1.8 * * * * 1.5 * *** * Relative 1.3 ** *** * Entropy 1.1 ** *** * (13.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGTCACAC consensus CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16446966-16447086 85 1.10e-05 GATTGCTTCT GGTCACAC TGGAAAGGTG chr2R:13554012-13554132 27 1.10e-05 GCTGCGCTGC GGTCACAC TAAGCGGCAA chr3R:5393884-5394004 67 1.10e-05 CTGTGGCTGC GGTCACAC TGGTCGTGTT chr3L:5794107-5794227 49 1.10e-05 TGCGGGCTGC GGTCACAC CTGGGAATTT chr2R:22888902-22889022 44 1.10e-05 AGCCCCATTT GGTCACAC TGTGCCCAGG chr3R:12408226-12408346 67 1.10e-05 TTGCAGGCAC GGTCACAC CGACACAGTT chr3R:31213392-31213512 30 1.10e-05 GCCGCGTGAA GGTCACAC TGCAACATCG chr3R:5358154-5358274 109 1.10e-05 CTATTAGCTT GGTCACAC CGTT chr2R:21011873-21011993 103 1.10e-05 GTACGACGTC GGTCACAC TGGCAAATTG chr2R:16344435-16344555 78 1.10e-05 TCCAAGGAGG GGTCACAC TGGTTGCTTT chr2R:10838663-10838783 84 1.10e-05 ACTGCCTTGC GGTCACAC TGTTTTTTTC chr3R:25097568-25097688 50 1.10e-05 CTGCCCAGGC GGTCACAC TAAAAATACC chr3L:17465880-17466000 61 1.10e-05 ATAACTAACT GGTCACAC TAAAGCGGCA chr2R:7785923-7786043 103 1.10e-05 CTCGAACCGC GGTCACAC CAAAAGCTGC chr2R:21685210-21685330 88 1.10e-05 TCAGCACTGC GGTCACAC CGAATCTTTC chrX:2073431-2073551 109 1.95e-05 CGCGAGCGTC GGGCACAC TGCC chr2L:143208-143328 97 3.04e-05 TTCTTAAACA GCTCACAC ATTACCGATG chr3R:9008376-9008496 32 3.04e-05 AAGCTTATTG GCTCACAC GGTCTGGTCA chr3R:4381197-4381317 23 4.74e-05 CAAATGGCCC GCGCACAC TATTTATTCG chr3L:10690978-10691098 64 4.74e-05 CCCACCGCTG GCGCACAC ACACATGCAC chr3L:18618238-18618358 42 4.74e-05 TTCGAACCAA GCGCACAC TATAGTTGTC chr3R:21629989-21630109 27 5.41e-05 AAGCGACTCA GGGCACGC AATGCGACTT chr3R:9932543-9932663 100 5.41e-05 CAAAGCCCCC GGGCACGC CCCTGCCCCC chrX:8588779-8588899 29 6.27e-05 TCGTGCGTCC GCTCACGC ACGCAACTCT chr3L:15161688-15161808 103 6.27e-05 TAATTTGACA GCTcacgc acaccatcac chr3L:12794695-12794815 78 6.27e-05 TAGTTGTCCC GCTCACGC TTTTCCATTC chr3R:8009268-8009388 100 7.13e-05 GGCATGTAAG GGTCACCC TGTGTTCAAG chrX:2720263-2720383 34 7.79e-05 TGATAAGGTG GCGCACGC AGGCTCAGCT chr2L:3108421-3108541 31 8.63e-05 TTCACTGCTT GGCCACAC TGCTTTGAAA chr2R:23864711-23864831 18 9.29e-05 CAGCCCACTT GGGcaccc acacatacac chr2L:12093680-12093800 21 1.10e-04 TTACGAATGC GGTCGCAC TAAGATGTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16446966-16447086 1.1e-05 84_[+2]_28 chr2R:13554012-13554132 1.1e-05 26_[+2]_86 chr3R:5393884-5394004 1.1e-05 66_[+2]_46 chr3L:5794107-5794227 1.1e-05 48_[+2]_64 chr2R:22888902-22889022 1.1e-05 43_[+2]_69 chr3R:12408226-12408346 1.1e-05 66_[+2]_46 chr3R:31213392-31213512 1.1e-05 29_[+2]_83 chr3R:5358154-5358274 1.1e-05 108_[+2]_4 chr2R:21011873-21011993 1.1e-05 102_[+2]_10 chr2R:16344435-16344555 1.1e-05 77_[+2]_35 chr2R:10838663-10838783 1.1e-05 83_[+2]_29 chr3R:25097568-25097688 1.1e-05 49_[+2]_63 chr3L:17465880-17466000 1.1e-05 60_[+2]_52 chr2R:7785923-7786043 1.1e-05 102_[+2]_10 chr2R:21685210-21685330 1.1e-05 87_[+2]_25 chrX:2073431-2073551 1.9e-05 108_[+2]_4 chr2L:143208-143328 3e-05 96_[+2]_16 chr3R:9008376-9008496 3e-05 31_[+2]_81 chr3R:4381197-4381317 4.7e-05 22_[+2]_90 chr3L:10690978-10691098 4.7e-05 63_[+2]_49 chr3L:18618238-18618358 4.7e-05 41_[+2]_71 chr3R:21629989-21630109 5.4e-05 26_[+2]_86 chr3R:9932543-9932663 5.4e-05 99_[+2]_13 chrX:8588779-8588899 6.3e-05 28_[+2]_84 chr3L:15161688-15161808 6.3e-05 102_[+2]_10 chr3L:12794695-12794815 6.3e-05 77_[+2]_35 chr3R:8009268-8009388 7.1e-05 99_[+2]_13 chrX:2720263-2720383 7.8e-05 33_[+2]_79 chr2L:3108421-3108541 8.6e-05 30_[+2]_82 chr2R:23864711-23864831 9.3e-05 17_[+2]_95 chr2L:12093680-12093800 0.00011 20_[+2]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTCACAC width=8 seqs=31 chrX:16446966-16447086 ( 85) GGTCACAC 1 chr2R:13554012-13554132 ( 27) GGTCACAC 1 chr3R:5393884-5394004 ( 67) GGTCACAC 1 chr3L:5794107-5794227 ( 49) GGTCACAC 1 chr2R:22888902-22889022 ( 44) GGTCACAC 1 chr3R:12408226-12408346 ( 67) GGTCACAC 1 chr3R:31213392-31213512 ( 30) GGTCACAC 1 chr3R:5358154-5358274 ( 109) GGTCACAC 1 chr2R:21011873-21011993 ( 103) GGTCACAC 1 chr2R:16344435-16344555 ( 78) GGTCACAC 1 chr2R:10838663-10838783 ( 84) GGTCACAC 1 chr3R:25097568-25097688 ( 50) GGTCACAC 1 chr3L:17465880-17466000 ( 61) GGTCACAC 1 chr2R:7785923-7786043 ( 103) GGTCACAC 1 chr2R:21685210-21685330 ( 88) GGTCACAC 1 chrX:2073431-2073551 ( 109) GGGCACAC 1 chr2L:143208-143328 ( 97) GCTCACAC 1 chr3R:9008376-9008496 ( 32) GCTCACAC 1 chr3R:4381197-4381317 ( 23) GCGCACAC 1 chr3L:10690978-10691098 ( 64) GCGCACAC 1 chr3L:18618238-18618358 ( 42) GCGCACAC 1 chr3R:21629989-21630109 ( 27) GGGCACGC 1 chr3R:9932543-9932663 ( 100) GGGCACGC 1 chrX:8588779-8588899 ( 29) GCTCACGC 1 chr3L:15161688-15161808 ( 103) GCTCACGC 1 chr3L:12794695-12794815 ( 78) GCTCACGC 1 chr3R:8009268-8009388 ( 100) GGTCACCC 1 chrX:2720263-2720383 ( 34) GCGCACGC 1 chr2L:3108421-3108541 ( 31) GGCCACAC 1 chr2R:23864711-23864831 ( 18) GGGCACCC 1 chr2L:12093680-12093800 ( 21) GGTCGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5371 E= 6.1e-008 -1160 -1160 219 -1160 -1160 41 170 -1160 -1160 -275 24 132 -1160 220 -1160 -1160 179 -1160 -276 -1160 -1160 220 -1160 -1160 141 -176 -18 -1160 -1160 220 -1160 -1160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 6.1e-008 0.000000 0.000000 1.000000 0.000000 0.000000 0.290323 0.709677 0.000000 0.000000 0.032258 0.258065 0.709677 0.000000 1.000000 0.000000 0.000000 0.967742 0.000000 0.032258 0.000000 0.000000 1.000000 0.000000 0.000000 0.741935 0.064516 0.193548 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 regular expression -------------------------------------------------------------------------------- G[GC][TG]CACAC -------------------------------------------------------------------------------- Time 13.57 secs. ******************************************************************************** ******************************************************************************** MOTIF GYTGCCAN MEME-3 width = 8 sites = 42 llr = 359 E-value = 1.9e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYTGCCAN MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3:::::92 pos.-specific C :6::aa:3 probability G 7::a::13 matrix T :4a::::2 bits 2.2 *** 2.0 *** 1.8 **** 1.5 ***** Relative 1.3 * ***** Entropy 1.1 ******* (12.3 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******* 0.0 -------- Multilevel GCTGCCAC consensus AT G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAN MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16012069-16012189 88 8.58e-06 AAATCATAAC GCTGCCAC ACCGACAGGA chr3R:11220073-11220193 5 8.58e-06 TTGC GCTGCCAC GATGCCAACA chr3L:17352939-17353059 86 8.58e-06 TCGAGATAGC GCTGCCAC TATGTTTAAA chr3R:9003917-9004037 29 8.58e-06 CGTTACCAGT GCTGCCAC GCTGCAGTTT chr3L:16351945-16352065 34 8.58e-06 TATGACCATT GCTGCCAC TCGGCGCGAA chr2R:10838663-10838783 46 8.58e-06 GCCTGCTGGA GCTGCCAC CCAGAAAGGG chr2R:12569816-12569936 55 8.58e-06 ACATGGTAAA GCTGCCAC CATGTTTCAG chr3L:3905235-3905355 58 8.58e-06 GCCATCTGGA GCTGCCAC ACTGCTGAAC chr3R:21073293-21073413 22 1.72e-05 TTTTAAACAT GCTGCCAG TGTGCACGTA chr3L:15835287-15835407 65 1.72e-05 GTTTTGTTTC GCTGCCAG GATTAAATGG chr2L:8709603-8709723 46 1.72e-05 GCGGTGGAGG GCTGCCAG ACTGTGATAA chr2L:2009762-2009882 47 2.84e-05 AGCTGATTCG GCTGCCAT TGTGAATGGT chr3R:6660092-6660212 90 2.84e-05 AATTTACAGT GCTGCCAT ATGGCAGTGG chr2L:453008-453128 19 3.96e-05 TGTAAGCAAC GTTGCCAC AGTTTTTGGA chr4:68692-68812 37 3.96e-05 CATATCATGA GTTGCCAC CTGGCAACTC chr3R:18283594-18283714 2 3.96e-05 C GTTGCCAC CCAATCGCGC chrX:2720263-2720383 80 6.18e-05 GTGAACAAGA GTTGCCAG ACGATCAGAG chr2L:13296206-13296326 67 6.18e-05 AAGTACGCGC GTTGCCAG ATTCGAGTAG chrX:12012277-12012397 72 6.18e-05 GCGTATGCGC GTTGCCAG ACAGCTGGCA chr2R:13861911-13862031 15 6.18e-05 TCGCTACATT GCTGCCAA CTTGAATTTT chr3L:5749764-5749884 5 6.18e-05 AAAC GTTGCCAG TGATGCCAGA chr2R:9972783-9972903 24 6.18e-05 GGGTAGCAGC GTTGCCAG ATAAAGGGAC chr3R:21629989-21630109 82 8.73e-05 TCACCTTTTC ACTGCCAC TACTCTGCTC chrX:1033200-1033320 112 8.73e-05 CATCGATATA ACTGCCAC C chrX:11709940-11710060 46 8.73e-05 CTTGAAGAGC GTTGCCAT ATTCGGACGA chr4:697589-697709 65 8.73e-05 CACGCCGAGA GTTGCCAT CCTGATACGA chr2R:7539653-7539773 86 9.83e-05 ATCACGAAGC ACTGCCAG GGATGGATGC chrX:16446966-16447086 64 1.13e-04 CCGGCAAAAC GTTGCCAA TTGGATTGCT chr3L:11711307-11711427 97 1.13e-04 AAGTTACCAT GTTGCCAA GATGATAAAT chrX:16547560-16547680 108 1.13e-04 TAAGGCCATT GTTGCCAA CTGAA chr2R:7785923-7786043 36 1.13e-04 CTGTCAACGC GTTGCCAA CGCTAAGCTT chr2R:13214635-13214755 29 1.27e-04 ACTGGGCAGC ACTGCCAT GTATCGATTG chr3L:19914919-19915039 30 1.27e-04 GGTGAAAGTC ACTGCCAT CACTATTTGA chr3L:5563680-5563800 52 1.27e-04 ACCAAATGCC ACTGCCAT CTTGAACTAG chr3R:26912854-26912974 72 1.41e-04 ACTGGCCAGT ATTGCCAC CAATTCTATC chr2L:6854023-6854143 101 1.69e-04 TACTTTGTGT ACTGCCAA GAGATCTTTG chr2L:21221174-21221294 75 1.69e-04 CAGTGCATCG ACTGCCAA CTCGCTTCAA chr3L:8338961-8339081 99 1.95e-04 TTTCTTTACA ATTGCCAT CTCTAATTGA chr2L:11280218-11280338 23 1.95e-04 CAACCCATAC ATTGCCAT TCGCATGTCG chrX:2073431-2073551 28 2.01e-04 TCTGGCCAGT GCTGCCGG ACCAGTTCGA chr3L:22461077-22461197 39 2.01e-04 tcgctgccga gctgccgg tagcgactgt chr3R:16260491-16260611 35 2.28e-04 TAATTTTAGT GCTGCCGT TACTTGTAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAN MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16012069-16012189 8.6e-06 87_[+3]_25 chr3R:11220073-11220193 8.6e-06 4_[+3]_108 chr3L:17352939-17353059 8.6e-06 85_[+3]_27 chr3R:9003917-9004037 8.6e-06 28_[+3]_84 chr3L:16351945-16352065 8.6e-06 33_[+3]_79 chr2R:10838663-10838783 8.6e-06 45_[+3]_67 chr2R:12569816-12569936 8.6e-06 54_[+3]_58 chr3L:3905235-3905355 8.6e-06 57_[+3]_55 chr3R:21073293-21073413 1.7e-05 21_[+3]_91 chr3L:15835287-15835407 1.7e-05 64_[+3]_48 chr2L:8709603-8709723 1.7e-05 45_[+3]_67 chr2L:2009762-2009882 2.8e-05 46_[+3]_66 chr3R:6660092-6660212 2.8e-05 89_[+3]_23 chr2L:453008-453128 4e-05 18_[+3]_94 chr4:68692-68812 4e-05 36_[+3]_76 chr3R:18283594-18283714 4e-05 1_[+3]_111 chrX:2720263-2720383 6.2e-05 79_[+3]_33 chr2L:13296206-13296326 6.2e-05 66_[+3]_46 chrX:12012277-12012397 6.2e-05 71_[+3]_41 chr2R:13861911-13862031 6.2e-05 14_[+3]_98 chr3L:5749764-5749884 6.2e-05 4_[+3]_108 chr2R:9972783-9972903 6.2e-05 23_[+3]_89 chr3R:21629989-21630109 8.7e-05 81_[+3]_31 chrX:1033200-1033320 8.7e-05 111_[+3]_1 chrX:11709940-11710060 8.7e-05 45_[+3]_67 chr4:697589-697709 8.7e-05 64_[+3]_48 chr2R:7539653-7539773 9.8e-05 85_[+3]_27 chrX:16446966-16447086 0.00011 63_[+3]_49 chr3L:11711307-11711427 0.00011 96_[+3]_16 chrX:16547560-16547680 0.00011 107_[+3]_5 chr2R:7785923-7786043 0.00011 35_[+3]_77 chr2R:13214635-13214755 0.00013 28_[+3]_84 chr3L:19914919-19915039 0.00013 29_[+3]_83 chr3L:5563680-5563800 0.00013 51_[+3]_61 chr3R:26912854-26912974 0.00014 71_[+3]_41 chr2L:6854023-6854143 0.00017 100_[+3]_12 chr2L:21221174-21221294 0.00017 74_[+3]_38 chr3L:8338961-8339081 0.00019 98_[+3]_14 chr2L:11280218-11280338 0.00019 22_[+3]_90 chrX:2073431-2073551 0.0002 27_[+3]_85 chr3L:22461077-22461197 0.0002 38_[+3]_74 chr3R:16260491-16260611 0.00023 34_[+3]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAN MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYTGCCAN width=8 seqs=42 chr3R:16012069-16012189 ( 88) GCTGCCAC 1 chr3R:11220073-11220193 ( 5) GCTGCCAC 1 chr3L:17352939-17353059 ( 86) GCTGCCAC 1 chr3R:9003917-9004037 ( 29) GCTGCCAC 1 chr3L:16351945-16352065 ( 34) GCTGCCAC 1 chr2R:10838663-10838783 ( 46) GCTGCCAC 1 chr2R:12569816-12569936 ( 55) GCTGCCAC 1 chr3L:3905235-3905355 ( 58) GCTGCCAC 1 chr3R:21073293-21073413 ( 22) GCTGCCAG 1 chr3L:15835287-15835407 ( 65) GCTGCCAG 1 chr2L:8709603-8709723 ( 46) GCTGCCAG 1 chr2L:2009762-2009882 ( 47) GCTGCCAT 1 chr3R:6660092-6660212 ( 90) GCTGCCAT 1 chr2L:453008-453128 ( 19) GTTGCCAC 1 chr4:68692-68812 ( 37) GTTGCCAC 1 chr3R:18283594-18283714 ( 2) GTTGCCAC 1 chrX:2720263-2720383 ( 80) GTTGCCAG 1 chr2L:13296206-13296326 ( 67) GTTGCCAG 1 chrX:12012277-12012397 ( 72) GTTGCCAG 1 chr2R:13861911-13862031 ( 15) GCTGCCAA 1 chr3L:5749764-5749884 ( 5) GTTGCCAG 1 chr2R:9972783-9972903 ( 24) GTTGCCAG 1 chr3R:21629989-21630109 ( 82) ACTGCCAC 1 chrX:1033200-1033320 ( 112) ACTGCCAC 1 chrX:11709940-11710060 ( 46) GTTGCCAT 1 chr4:697589-697709 ( 65) GTTGCCAT 1 chr2R:7539653-7539773 ( 86) ACTGCCAG 1 chrX:16446966-16447086 ( 64) GTTGCCAA 1 chr3L:11711307-11711427 ( 97) GTTGCCAA 1 chrX:16547560-16547680 ( 108) GTTGCCAA 1 chr2R:7785923-7786043 ( 36) GTTGCCAA 1 chr2R:13214635-13214755 ( 29) ACTGCCAT 1 chr3L:19914919-19915039 ( 30) ACTGCCAT 1 chr3L:5563680-5563800 ( 52) ACTGCCAT 1 chr3R:26912854-26912974 ( 72) ATTGCCAC 1 chr2L:6854023-6854143 ( 101) ACTGCCAA 1 chr2L:21221174-21221294 ( 75) ACTGCCAA 1 chr3L:8338961-8339081 ( 99) ATTGCCAT 1 chr2L:11280218-11280338 ( 23) ATTGCCAT 1 chrX:2073431-2073551 ( 28) GCTGCCGG 1 chr3L:22461077-22461197 ( 39) GCTGCCGG 1 chr3R:16260491-16260611 ( 35) GCTGCCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAN MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8977 E= 1.9e-005 -9 -1204 175 -1204 -1204 145 -1204 51 -1204 -1204 -1204 182 -1204 -1204 219 -1204 -1204 220 -1204 -1204 -1204 220 -1204 -1204 173 -1204 -162 -1204 -74 61 26 -25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAN MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 1.9e-005 0.261905 0.000000 0.738095 0.000000 0.000000 0.595238 0.000000 0.404762 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.928571 0.000000 0.071429 0.000000 0.166667 0.333333 0.261905 0.238095 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAN MEME-3 regular expression -------------------------------------------------------------------------------- [GA][CT]TGCCA[CGT] -------------------------------------------------------------------------------- Time 19.68 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCARCDC MEME-4 width = 8 sites = 21 llr = 203 E-value = 4.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCARCDC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a5:3: pos.-specific C ::a::a1a probability G aa::5:3: matrix T ::::::3: bits 2.2 *** * * 2.0 *** * * 1.8 **** * * 1.5 **** * * Relative 1.3 **** * * Entropy 1.1 ****** * (13.9 bits) 0.9 ****** * 0.7 ****** * 0.4 ****** * 0.2 ****** * 0.0 -------- Multilevel GGCAACGC consensus G A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARCDC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:13296206-13296326 96 6.65e-06 AAACTCTAAT GGCAGCGC TGGCGAACGA chr2R:24313262-24313382 100 6.65e-06 GAGCACATCT GGCAGCGC CGTGTGTAAC chr2L:16879373-16879493 94 6.65e-06 CCAGAAGTAT GGCAGCGC CATAAAACAG chrX:10472732-10472852 109 1.51e-05 CGGCAGAAGC GGCAACGC ATTG chr2L:3029173-3029293 58 1.51e-05 AAATCAAGCT GGCAACGC AAAGGACAGG chr3L:18901515-18901635 45 1.51e-05 CAAACAGTCC GGCAACGC TTTATCTACT chrX:16547560-16547680 16 1.51e-05 AATCGAAAGG GGCAACGC TGTCTACACG chr3R:16359256-16359376 104 2.36e-05 GTAATCGATG GGCAGCAC TGGTGTGCT chrX:2720263-2720383 14 2.36e-05 GATGCAAGGT GGCAGCAC ATTGATAAGG chrX:17305674-17305794 47 2.36e-05 ATCATGCTTT GGCAGCAC TGCGTTTATA chr2R:8106296-8106416 52 2.36e-05 TAGCTCAGCG GGCAGCAC TGCCTATCGA chr3R:9008376-9008496 84 3.22e-05 CTCACAGGGT GGCAGCTC CGTCAAATTG chr3R:25245543-25245663 53 3.22e-05 CCTAACATCT GGCAGCTC CGTTAATATG chr2R:13554012-13554132 40 4.30e-05 CACACTAAGC GGCAACAC CGGGTGGAAT chr3R:9020014-9020134 61 4.30e-05 TGCGCTAGGT GGCAACAC AGGTGCGTTG chr2R:17098559-17098679 26 5.40e-05 TTAACATTCT GGCAACTC TTTGCATGGT chr2L:10437468-10437588 97 5.40e-05 TGTGAGTCTT GGCAACTC TAGAAACACA chr4:68692-68812 47 5.40e-05 GTTGCCACCT GGCAACTC CCACATCACG chrX:12012277-12012397 86 5.40e-05 CCAGACAGCT GGCAACTC CAATGAGTGT chr3L:16351945-16352065 5 6.06e-05 AGTT GGCAGCCC TCCTTGAGCA chr3L:15161688-15161808 80 6.90e-05 AAAACAAAGT GGCAACCC TTCTATAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARCDC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:13296206-13296326 6.6e-06 95_[+4]_17 chr2R:24313262-24313382 6.6e-06 99_[+4]_13 chr2L:16879373-16879493 6.6e-06 93_[+4]_19 chrX:10472732-10472852 1.5e-05 108_[+4]_4 chr2L:3029173-3029293 1.5e-05 57_[+4]_55 chr3L:18901515-18901635 1.5e-05 44_[+4]_68 chrX:16547560-16547680 1.5e-05 15_[+4]_97 chr3R:16359256-16359376 2.4e-05 103_[+4]_9 chrX:2720263-2720383 2.4e-05 13_[+4]_99 chrX:17305674-17305794 2.4e-05 46_[+4]_66 chr2R:8106296-8106416 2.4e-05 51_[+4]_61 chr3R:9008376-9008496 3.2e-05 83_[+4]_29 chr3R:25245543-25245663 3.2e-05 52_[+4]_60 chr2R:13554012-13554132 4.3e-05 39_[+4]_73 chr3R:9020014-9020134 4.3e-05 60_[+4]_52 chr2R:17098559-17098679 5.4e-05 25_[+4]_87 chr2L:10437468-10437588 5.4e-05 96_[+4]_16 chr4:68692-68812 5.4e-05 46_[+4]_66 chrX:12012277-12012397 5.4e-05 85_[+4]_27 chr3L:16351945-16352065 6.1e-05 4_[+4]_108 chr3L:15161688-15161808 6.9e-05 79_[+4]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARCDC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCARCDC width=8 seqs=21 chr2L:13296206-13296326 ( 96) GGCAGCGC 1 chr2R:24313262-24313382 ( 100) GGCAGCGC 1 chr2L:16879373-16879493 ( 94) GGCAGCGC 1 chrX:10472732-10472852 ( 109) GGCAACGC 1 chr2L:3029173-3029293 ( 58) GGCAACGC 1 chr3L:18901515-18901635 ( 45) GGCAACGC 1 chrX:16547560-16547680 ( 16) GGCAACGC 1 chr3R:16359256-16359376 ( 104) GGCAGCAC 1 chrX:2720263-2720383 ( 14) GGCAGCAC 1 chrX:17305674-17305794 ( 47) GGCAGCAC 1 chr2R:8106296-8106416 ( 52) GGCAGCAC 1 chr3R:9008376-9008496 ( 84) GGCAGCTC 1 chr3R:25245543-25245663 ( 53) GGCAGCTC 1 chr2R:13554012-13554132 ( 40) GGCAACAC 1 chr3R:9020014-9020134 ( 61) GGCAACAC 1 chr2R:17098559-17098679 ( 26) GGCAACTC 1 chr2L:10437468-10437588 ( 97) GGCAACTC 1 chr4:68692-68812 ( 47) GGCAACTC 1 chrX:12012277-12012397 ( 86) GGCAACTC 1 chr3L:16351945-16352065 ( 5) GGCAGCCC 1 chr3L:15161688-15161808 ( 80) GGCAACCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARCDC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 4.4e-001 -1104 -1104 219 -1104 -1104 -1104 219 -1104 -1104 220 -1104 -1104 184 -1104 -1104 -1104 91 -1104 112 -1104 -1104 220 -1104 -1104 3 -119 61 1 -1104 220 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARCDC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 4.4e-001 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.523810 0.000000 0.476190 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.095238 0.333333 0.285714 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARCDC MEME-4 regular expression -------------------------------------------------------------------------------- GGCA[AG]C[GAT]C -------------------------------------------------------------------------------- Time 25.70 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGGCGCY MEME-5 width = 8 sites = 22 llr = 210 E-value = 1.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGGCGCY MEME-5 Description -------------------------------------------------------------------------------- Simplified A 3::::::: pos.-specific C ::::a:a5 probability G :1aa:a:1 matrix T 79:::::3 bits 2.2 ***** 2.0 ***** 1.8 ***** 1.5 ***** Relative 1.3 ****** Entropy 1.1 ****** (13.7 bits) 0.9 ******* 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGGCGCC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCGCY MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:13829747-13829867 101 8.78e-06 AGGGAATAAT TTGGCGCC ATTTCAATGG chr3R:23348031-23348151 7 8.78e-06 TTGAAA TTGGCGCC AAACGTGTTA chr2L:13296206-13296326 47 8.78e-06 TCATTTGAAA TTGGCGCC CAAAGTACGC chr2R:24337648-24337768 107 8.78e-06 TGCTTGTCAG TTGGCGCC AATTCA chr2R:7539653-7539773 108 8.78e-06 GGATGCTCAT TTGGCGCC AAAGG chr2R:14175617-14175737 78 8.78e-06 CCGCACCATT TTGGCGCC CATCACACAC chr3L:18026102-18026222 110 8.78e-06 TGGGAAAGCT TTGGCGCC TGG chr3L:324681-324801 104 2.02e-05 CGCATTGTAA TTGGCGCT TAGATTTTC chr2R:23043037-23043157 77 2.02e-05 AAATGACAAG TTGGCGCT TATGTTATTG chr2L:2376304-2376424 94 2.02e-05 TACCGAGGGG TTGGCGCT CGCGGGGGCG chr3L:17597059-17597179 66 2.88e-05 CTAGCTGTAG ATGGCGCC ACCATTTTAT chr3R:5463475-5463595 67 2.88e-05 GGAGCCGAAA ATGGCGCC CGCAAAAAGG chr2R:10886700-10886820 9 3.77e-05 AAAATTCG TTGGCGCG AAAGTGCCTG chr3L:5749764-5749884 111 3.77e-05 TTTGAATTGT TTGGCGCG CT chrX:1772740-1772860 29 4.89e-05 CAGTCACCAG ATGGCGCT ACATATGTAT chr3R:23722076-23722196 93 4.89e-05 TAGTCAACAG ATGGCGCT CTAAAATCTT chr2L:9887939-9888059 57 4.89e-05 AATACTATAG ATGGCGCT TTAGTTAGCA chr3L:21892299-21892419 78 4.89e-05 CCACATTTTT ATGGCGCT TGTACCCCAC chr3R:7515819-7515939 89 6.43e-05 CTGGCTGTTC TGGGCGCC GTTGTTTTGT chr2R:12955854-12955974 67 6.43e-05 GACTCTCTAC ATGGCGCG TAGACTTTAT chr2R:13935616-13935736 26 6.43e-05 GAACGTGCGC TGGGCGCC TGATCAGATT chr3L:12794695-12794815 15 7.55e-05 CTATCGATAG TTGGCGCA ACTGAAGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCGCY MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:13829747-13829867 8.8e-06 100_[+5]_12 chr3R:23348031-23348151 8.8e-06 6_[+5]_106 chr2L:13296206-13296326 8.8e-06 46_[+5]_66 chr2R:24337648-24337768 8.8e-06 106_[+5]_6 chr2R:7539653-7539773 8.8e-06 107_[+5]_5 chr2R:14175617-14175737 8.8e-06 77_[+5]_35 chr3L:18026102-18026222 8.8e-06 109_[+5]_3 chr3L:324681-324801 2e-05 103_[+5]_9 chr2R:23043037-23043157 2e-05 76_[+5]_36 chr2L:2376304-2376424 2e-05 93_[+5]_19 chr3L:17597059-17597179 2.9e-05 65_[+5]_47 chr3R:5463475-5463595 2.9e-05 66_[+5]_46 chr2R:10886700-10886820 3.8e-05 8_[+5]_104 chr3L:5749764-5749884 3.8e-05 110_[+5]_2 chrX:1772740-1772860 4.9e-05 28_[+5]_84 chr3R:23722076-23722196 4.9e-05 92_[+5]_20 chr2L:9887939-9888059 4.9e-05 56_[+5]_56 chr3L:21892299-21892419 4.9e-05 77_[+5]_35 chr3R:7515819-7515939 6.4e-05 88_[+5]_24 chr2R:12955854-12955974 6.4e-05 66_[+5]_46 chr2R:13935616-13935736 6.4e-05 25_[+5]_87 chr3L:12794695-12794815 7.6e-05 14_[+5]_98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCGCY MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGGCGCY width=8 seqs=22 chr2L:13829747-13829867 ( 101) TTGGCGCC 1 chr3R:23348031-23348151 ( 7) TTGGCGCC 1 chr2L:13296206-13296326 ( 47) TTGGCGCC 1 chr2R:24337648-24337768 ( 107) TTGGCGCC 1 chr2R:7539653-7539773 ( 108) TTGGCGCC 1 chr2R:14175617-14175737 ( 78) TTGGCGCC 1 chr3L:18026102-18026222 ( 110) TTGGCGCC 1 chr3L:324681-324801 ( 104) TTGGCGCT 1 chr2R:23043037-23043157 ( 77) TTGGCGCT 1 chr2L:2376304-2376424 ( 94) TTGGCGCT 1 chr3L:17597059-17597179 ( 66) ATGGCGCC 1 chr3R:5463475-5463595 ( 67) ATGGCGCC 1 chr2R:10886700-10886820 ( 9) TTGGCGCG 1 chr3L:5749764-5749884 ( 111) TTGGCGCG 1 chrX:1772740-1772860 ( 29) ATGGCGCT 1 chr3R:23722076-23722196 ( 93) ATGGCGCT 1 chr2L:9887939-9888059 ( 57) ATGGCGCT 1 chr3L:21892299-21892419 ( 78) ATGGCGCT 1 chr3R:7515819-7515939 ( 89) TGGGCGCC 1 chr2R:12955854-12955974 ( 67) ATGGCGCG 1 chr2R:13935616-13935736 ( 26) TGGGCGCC 1 chr3L:12794695-12794815 ( 15) TTGGCGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCGCY MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3525 E= 1.5e+000 19 -1110 -1110 127 -1110 -1110 -127 168 -1110 -1110 219 -1110 -1110 -1110 219 -1110 -1110 220 -1110 -1110 -1110 -1110 219 -1110 -1110 220 -1110 -1110 -262 120 -68 17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCGCY MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.5e+000 0.318182 0.000000 0.000000 0.681818 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.045455 0.500000 0.136364 0.318182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCGCY MEME-5 regular expression -------------------------------------------------------------------------------- [TA]TGGCGC[CT] -------------------------------------------------------------------------------- Time 31.70 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16351201-16351321 1.09e-01 120 chr3R:9784473-9784593 3.45e-01 120 chr2R:21687610-21687730 4.15e-03 57_[+1(2.38e-05)]_55 chr3L:9094984-9095104 4.01e-01 120 chr2R:21714744-21714864 1.75e-01 120 chr2R:21078434-21078554 8.46e-01 120 chr3L:1206786-1206906 6.06e-01 120 chr3L:16930625-16930745 1.17e-01 120 chr3R:21163403-21163523 2.54e-01 120 chr2L:3108421-3108541 2.52e-02 30_[+2(8.63e-05)]_82 chr3L:11523494-11523614 8.78e-01 120 chr2R:9972783-9972903 1.66e-01 23_[+3(6.18e-05)]_89 chr3L:1188946-1189066 3.50e-01 120 chr2L:14588990-14589110 9.85e-01 120 chr3L:5749764-5749884 6.46e-03 4_[+3(6.18e-05)]_98_[+5(3.77e-05)]_\ 2 chr2R:13861911-13862031 2.28e-02 14_[+3(6.18e-05)]_98 chr2R:21685210-21685330 5.36e-02 87_[+2(1.10e-05)]_25 chr3R:6170847-6170967 8.60e-01 120 chr3R:16041083-16041203 7.20e-01 120 chr3R:26540550-26540670 4.44e-01 120 chr3L:12794695-12794815 3.65e-05 5_[+1(2.38e-05)]_1_[+5(7.55e-05)]_\ 55_[+2(6.27e-05)]_35 chr3L:14674143-14674263 9.25e-01 120 chr3R:16260491-16260611 2.02e-01 120 chr3R:16978041-16978161 6.61e-01 120 chr2L:6914138-6914258 6.39e-01 120 chr2R:13935616-13935736 8.80e-02 25_[+5(6.43e-05)]_87 chr2R:25183040-25183160 3.54e-01 120 chrX:17820372-17820492 9.47e-01 120 chr3L:4242613-4242733 3.01e-01 120 chrX:8242446-8242566 3.26e-02 120 chrX:2161111-2161231 8.68e-01 120 chr2L:12455153-12455273 9.29e-01 120 chr2R:18523966-18524086 5.44e-01 120 chr2R:8396765-8396885 4.22e-01 120 chr2L:8709603-8709723 1.63e-02 45_[+3(1.72e-05)]_67 chr4:557974-558094 9.41e-01 120 chr3R:27905912-27906032 3.77e-01 120 chr2L:16879373-16879493 8.79e-04 50_[+1(2.38e-05)]_35_[+4(6.65e-06)]_\ 19 chr3L:18026102-18026222 3.75e-02 109_[+5(8.78e-06)]_3 chr3L:339147-339267 7.57e-01 120 chr2L:8943269-8943389 3.77e-02 87_[+1(8.40e-05)]_25 chr3L:19268890-19269010 4.86e-01 120 chr3R:29116293-29116413 6.92e-02 98_[+1(2.38e-05)]_14 chr3R:9793248-9793368 7.25e-01 120 chr3R:26103548-26103668 2.44e-01 120 chr2L:19580405-19580525 2.11e-01 120 chr2R:23864711-23864831 5.10e-03 17_[+2(9.29e-05)]_95 chr2L:4345877-4345997 1.47e-01 120 chr2L:11280218-11280338 2.19e-02 120 chrX:16323202-16323322 1.32e-01 120 chr3R:12222208-12222328 6.82e-01 120 chr3L:17470205-17470325 4.75e-01 120 chr2R:16689588-16689708 4.02e-02 120 chr2R:18167177-18167297 4.85e-01 120 chr2R:24313262-24313382 3.07e-02 99_[+4(6.65e-06)]_13 chr2R:7785923-7786043 1.67e-04 102_[+2(1.10e-05)]_10 chrX:7679015-7679135 9.94e-01 120 chr2R:14860733-14860853 2.91e-03 99_[+5(7.55e-05)]_13 chr3R:24650050-24650170 4.99e-02 120 chr3R:16050695-16050815 3.64e-01 120 chr2L:12520394-12520514 9.50e-01 120 chr3R:4962770-4962890 1.62e-01 120 chr3R:23127980-23128100 2.90e-02 120 chrX:15320181-15320301 7.20e-01 120 chr3L:3905235-3905355 1.46e-03 57_[+3(8.58e-06)]_55 chr3R:25245543-25245663 4.99e-02 52_[+4(3.22e-05)]_60 chr2R:12569816-12569936 6.76e-02 54_[+3(8.58e-06)]_58 chr2R:24687365-24687485 4.36e-01 120 chr2L:18147704-18147824 4.94e-01 120 chr3R:6660092-6660212 1.04e-01 89_[+3(2.84e-05)]_23 chr3L:16981397-16981517 4.05e-01 120 chrX:12012277-12012397 1.98e-03 71_[+3(6.18e-05)]_6_[+4(5.40e-05)]_\ 17_[+4(6.06e-05)]_2 chr3L:15524080-15524200 1.59e-01 120 chr2L:2376304-2376424 2.65e-03 93_[+5(2.02e-05)]_19 chr3L:17465880-17466000 4.68e-02 60_[+2(1.10e-05)]_52 chr2L:404092-404212 6.98e-01 120 chr2R:12955854-12955974 2.69e-01 66_[+5(6.43e-05)]_46 chr2R:21519114-21519234 6.93e-02 120 chr2R:24779855-24779975 1.64e-01 120 chr3R:10099528-10099648 2.44e-01 120 chr3L:9096820-9096940 3.37e-02 18_[+4(8.43e-05)]_94 chr3R:9008376-9008496 9.78e-04 31_[+2(3.04e-05)]_44_[+4(3.22e-05)]_\ 29 chr2L:19542305-19542425 1.75e-01 46_[+1(2.38e-05)]_66 chr3R:25097568-25097688 1.23e-02 49_[+2(1.10e-05)]_63 chr3R:20908793-20908913 6.30e-01 120 chr2R:10838663-10838783 7.53e-04 45_[+3(8.58e-06)]_30_[+2(1.10e-05)]_\ 29 chr2R:12518975-12519095 9.38e-01 120 chrX:8145618-8145738 9.37e-01 120 chr2L:4949780-4949900 8.27e-01 120 chr3R:25652239-25652359 1.34e-01 120 chr2R:15537957-15538077 9.52e-01 120 chr3R:13309261-13309381 6.34e-01 120 chr2L:12040649-12040769 9.02e-01 120 chr2R:14618072-14618192 3.22e-02 120 chr3L:342947-343067 8.22e-01 120 chr3L:18618238-18618358 1.25e-02 41_[+2(4.74e-05)]_71 chr2R:9133360-9133480 4.55e-01 120 chrX:2125679-2125799 4.40e-01 120 chr3L:22461077-22461197 3.05e-02 120 chrX:6824275-6824395 5.78e-01 120 chr2L:12093680-12093800 8.79e-02 120 chr3L:871841-871961 2.29e-03 120 chr2L:19166113-19166233 4.30e-01 120 chr3L:8338961-8339081 9.70e-03 120 chr2R:14175617-14175737 2.64e-02 77_[+5(8.78e-06)]_35 chr2R:13509511-13509631 1.33e-01 120 chr3R:11822439-11822559 3.60e-02 42_[+1(2.38e-05)]_70 chr2R:7539653-7539773 2.37e-03 85_[+3(9.83e-05)]_14_[+5(8.78e-06)]_\ 5 chr3R:24938201-24938321 3.06e-02 98_[+1(6.57e-05)]_14 chr3L:18828437-18828557 1.81e-01 120 chr2R:10886700-10886820 4.49e-03 8_[+5(3.77e-05)]_104 chr2R:16344435-16344555 1.40e-02 77_[+2(1.10e-05)]_35 chr3R:15291754-15291874 8.98e-01 120 chr3R:29857475-29857595 1.99e-01 120 chr2R:21011873-21011993 2.66e-03 102_[+2(1.10e-05)]_10 chr3L:5563680-5563800 2.55e-01 120 chr3L:3942331-3942451 7.11e-01 120 chr3L:16351945-16352065 1.15e-04 4_[+4(6.06e-05)]_21_[+3(8.58e-06)]_\ 79 chr2L:4973842-4973962 9.07e-01 120 chr3L:15835287-15835407 7.03e-02 64_[+3(1.72e-05)]_48 chr2R:24337648-24337768 5.89e-02 106_[+5(8.78e-06)]_6 chrX:13370940-13371060 2.61e-02 120 chr2L:821296-821416 2.88e-01 120 chr3L:15161688-15161808 1.43e-02 79_[+4(6.90e-05)]_15_[+2(6.27e-05)]_\ 10 chr3R:7515819-7515939 2.72e-03 88_[+5(6.43e-05)]_24 chr3L:5753063-5753183 1.22e-01 120 chr2R:16322129-16322249 1.19e-01 120 chr3L:21892299-21892419 8.43e-02 77_[+5(4.89e-05)]_35 chrX:15749054-15749174 1.51e-01 120 chrX:2184657-2184777 7.46e-01 120 chr3R:18283594-18283714 1.21e-03 1_[+3(3.96e-05)]_8_[+3(6.18e-05)]_\ 22_[+1(4.71e-05)]_65 chr2L:6622747-6622867 6.26e-01 120 chr3R:19903389-19903509 2.74e-01 120 chr3R:8938553-8938673 7.90e-01 120 chr2L:13296206-13296326 1.43e-05 46_[+5(8.78e-06)]_12_[+3(6.18e-05)]_\ 21_[+4(6.65e-06)]_17 chr3L:19169194-19169314 1.53e-01 120 chr3R:5463475-5463595 3.07e-03 66_[+5(2.88e-05)]_46 chr2L:14348748-14348868 5.54e-01 120 chr3L:17616968-17617088 3.70e-01 120 chr2R:21160503-21160623 2.33e-01 87_[+1(6.57e-05)]_25 chrX:19605173-19605293 4.62e-01 120 chr2R:23062567-23062687 6.02e-02 4_[+1(8.40e-05)]_108 chr4:68692-68812 5.89e-03 36_[+3(3.96e-05)]_2_[+4(5.40e-05)]_\ 66 chr2L:13813726-13813846 1.08e-01 120 chr3R:5358154-5358274 9.02e-03 108_[+2(1.10e-05)]_4 chr3R:21118854-21118974 8.53e-01 120 chrX:7722038-7722158 1.27e-02 38_[+1(6.57e-05)]_74 chr3R:26912854-26912974 1.03e-01 120 chr3R:15993250-15993370 1.84e-01 120 chr2L:10437468-10437588 7.30e-03 55_[+1(8.40e-05)]_33_[+4(5.40e-05)]_\ 16 chr3R:9020014-9020134 3.96e-03 38_[+1(4.71e-05)]_14_[+4(4.30e-05)]_\ 52 chr3R:22447343-22447463 7.92e-01 120 chr4:697589-697709 2.08e-02 4_[+3(8.73e-05)]_52_[+3(8.73e-05)]_\ 30_[+1(4.71e-05)]_10 chr3L:18022562-18022682 1.63e-01 120 chrX:6291203-6291323 3.41e-01 120 chr2R:8106296-8106416 8.97e-04 35_[+1(4.71e-05)]_8_[+4(2.36e-05)]_\ 4_[+1(2.38e-05)]_49 chr3L:19914919-19915039 2.13e-03 10_[+1(4.71e-05)]_102 chr3L:17474920-17475040 6.77e-01 120 chrX:8588779-8588899 1.23e-02 28_[+2(6.27e-05)]_84 chr3R:8340984-8341104 5.37e-02 42_[+1(6.57e-05)]_3_[+1(2.38e-05)]_\ 59 chr2R:17098559-17098679 1.33e-01 25_[+4(5.40e-05)]_87 chr3R:9006237-9006357 1.00e+00 120 chrX:11709940-11710060 2.29e-02 3_[+1(6.57e-05)]_34_[+3(8.73e-05)]_\ 67 chrX:9283082-9283202 2.03e-01 120 chr3R:9003917-9004037 3.57e-04 28_[+3(8.58e-06)]_33_[+3(8.73e-05)]_\ 22_[+1(2.38e-05)]_13 chr2L:143208-143328 4.50e-03 96_[+2(3.04e-05)]_16 chrX:15835482-15835602 1.77e-01 67_[+1(4.71e-05)]_45 chrX:2073431-2073551 4.37e-03 108_[+2(1.95e-05)]_4 chrX:17305674-17305794 6.10e-02 46_[+4(2.36e-05)]_25_[+4(4.30e-05)]_\ 33 chrX:16547560-16547680 2.06e-04 15_[+4(1.51e-05)]_97 chr3L:19040282-19040402 9.06e-02 120 chr3L:18901515-18901635 1.91e-03 44_[+4(1.51e-05)]_53_[+1(2.38e-05)]_\ 7 chr3L:10690978-10691098 8.43e-04 31_[+1(2.38e-05)]_24_[+2(4.74e-05)]_\ 49 chr2R:25253222-25253342 5.49e-01 120 chr2L:453008-453128 3.27e-02 18_[+3(3.96e-05)]_94 chr2R:23988410-23988530 6.66e-03 62_[+1(4.71e-05)]_13_[+1(6.57e-05)]_\ 29 chr3R:9932543-9932663 1.49e-02 99_[+2(5.41e-05)]_13 chrX:1033200-1033320 2.34e-05 25_[+1(2.38e-05)]_55_[+4(8.43e-05)]_\ 15_[+3(8.73e-05)]_1 chr2R:16551975-16552095 7.99e-01 120 chr2R:23882384-23882504 8.12e-01 120 chr2R:9252029-9252149 9.61e-01 120 chr2L:21221174-21221294 1.09e-01 120 chr2L:2009762-2009882 2.05e-02 46_[+3(2.84e-05)]_66 chrX:1399803-1399923 2.15e-01 120 chr2R:12198832-12198952 1.70e-01 120 chr3L:9762240-9762360 1.36e-01 120 chr2R:8131302-8131422 1.78e-01 78_[+1(2.38e-05)]_34 chr2R:23043037-23043157 1.33e-02 76_[+5(2.02e-05)]_36 chr3L:17352939-17353059 1.89e-02 85_[+3(8.58e-06)]_27 chr2L:10298476-10298596 9.81e-01 120 chr3R:23348031-23348151 1.79e-02 6_[+5(8.78e-06)]_106 chr2L:9887939-9888059 5.55e-02 56_[+5(4.89e-05)]_56 chr2R:23551191-23551311 2.03e-02 79_[+1(8.40e-05)]_6_[+1(8.40e-05)]_\ 19 chrX:19601780-19601900 2.71e-03 52_[+1(2.38e-05)]_60 chr3L:1652865-1652985 1.56e-01 120 chr2L:13829747-13829867 2.08e-03 19_[+1(2.38e-05)]_73_[+5(8.78e-06)]_\ 12 chr2L:18951804-18951924 2.85e-02 29_[+1(2.38e-05)]_83 chrX:2720263-2720383 8.47e-07 13_[+4(2.36e-05)]_12_[+2(7.79e-05)]_\ 38_[+3(6.18e-05)]_22_[+1(2.38e-05)]_3 chr3L:11711307-11711427 2.03e-01 120 chrX:6820911-6821031 1.57e-01 120 chr2L:6467671-6467791 3.20e-01 120 chr3L:324681-324801 3.03e-03 9_[+1(8.40e-05)]_12_[+1(2.38e-05)]_\ 66_[+5(2.02e-05)]_9 chr2R:24797420-24797540 2.42e-01 120 chr3R:13078414-13078534 6.01e-01 120 chr3R:27151588-27151708 2.37e-01 120 chr3R:31213392-31213512 1.30e-03 29_[+2(1.10e-05)]_36_[+1(4.71e-05)]_\ 39 chr3R:11220073-11220193 7.79e-03 4_[+3(8.58e-06)]_108 chr3L:11772701-11772821 1.03e-01 120 chr3L:11681924-11682044 4.22e-01 120 chr3R:8009268-8009388 3.05e-01 99_[+2(7.13e-05)]_13 chr3L:15837416-15837536 4.19e-01 120 chr2R:16271940-16272060 1.71e-01 120 chr3R:21073293-21073413 8.21e-03 21_[+3(1.72e-05)]_91 chr3R:4381197-4381317 3.05e-04 22_[+2(4.74e-05)]_42_[+1(6.57e-05)]_\ 40 chr3L:4553527-4553647 8.19e-01 120 chr3R:16012069-16012189 1.17e-03 87_[+3(8.58e-06)]_25 chr3L:17841291-17841411 1.54e-02 120 chr3R:12408226-12408346 9.00e-04 66_[+2(1.10e-05)]_29_[+1(2.38e-05)]_\ 9 chr2R:22888902-22889022 4.14e-02 43_[+2(1.10e-05)]_69 chr2L:6854023-6854143 6.27e-02 120 chr3R:23722076-23722196 5.87e-02 92_[+5(4.89e-05)]_20 chr3R:24360122-24360242 7.92e-01 120 chr3L:5794107-5794227 5.65e-03 48_[+2(1.10e-05)]_64 chr3R:5393884-5394004 2.35e-02 66_[+2(1.10e-05)]_46 chr2R:13214635-13214755 1.25e-05 22_[+4(2.36e-05)]_26_[+1(2.38e-05)]_\ 56 chr3L:17950523-17950643 4.03e-01 120 chr3R:31580715-31580835 4.19e-01 120 chr2R:8947351-8947471 2.16e-01 120 chr3R:12422724-12422844 5.41e-02 120 chr3L:20816004-20816124 2.07e-01 64_[+1(2.38e-05)]_24_[+1(2.38e-05)]_\ 16 chr2R:13554012-13554132 6.70e-05 26_[+2(1.10e-05)]_5_[+4(4.30e-05)]_\ 7_[+1(4.71e-05)]_58 chr3R:16359256-16359376 3.78e-03 95_[+1(8.40e-05)]_[+4(2.36e-05)]_9 chr2L:6971852-6971972 4.97e-01 120 chr2R:16850325-16850445 3.38e-02 39_[+1(2.38e-05)]_73 chr2L:3029173-3029293 2.26e-04 13_[+1(2.38e-05)]_36_[+4(1.51e-05)]_\ 55 chr2R:12933942-12934062 6.84e-01 120 chr3R:23725871-23725991 8.38e-01 120 chrX:10472732-10472852 4.63e-03 108_[+4(1.51e-05)]_4 chr3R:22487120-22487240 8.97e-02 48_[+1(4.71e-05)]_64 chrX:1772740-1772860 2.51e-04 28_[+5(4.89e-05)]_84 chr2L:19430496-19430616 9.51e-01 120 chr3L:17597059-17597179 4.10e-02 65_[+5(2.88e-05)]_47 chr2R:23977246-23977366 4.67e-02 100_[+1(2.38e-05)]_12 chr3R:6646778-6646898 2.04e-01 120 chr3L:199231-199351 2.61e-02 120 chr2L:102280-102400 1.63e-01 88_[+1(6.57e-05)]_8_[+1(2.38e-05)]_\ 8 chr3L:6550296-6550416 2.17e-01 120 chrX:16446966-16447086 1.89e-05 32_[+1(2.38e-05)]_44_[+2(1.10e-05)]_\ 28 chr3R:21629989-21630109 1.79e-03 26_[+2(5.41e-05)]_47_[+3(8.73e-05)]_\ 31 chr3L:9134482-9134602 8.91e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************