******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/HmgD.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:24313270-24313390 1.0000 120 chr3L:4627185-4627305 1.0000 120 chr3R:16351172-16351292 1.0000 120 chr2L:7856489-7856609 1.0000 120 chr3L:1206800-1206920 1.0000 120 chrX:16840058-16840178 1.0000 120 chr2L:19393828-19393948 1.0000 120 chr3L:14674146-14674266 1.0000 120 chr3L:20097390-20097510 1.0000 120 chr2R:23601872-23601992 1.0000 120 chr2R:15954943-15955063 1.0000 120 chr3R:8312490-8312610 1.0000 120 chr2R:5693258-5693378 1.0000 120 chr3R:24279498-24279618 1.0000 120 chr3R:5438910-5439030 1.0000 120 chrX:17077230-17077350 1.0000 120 chrX:11800020-11800140 1.0000 120 chrX:7320914-7321034 1.0000 120 chr3R:28345449-28345569 1.0000 120 chr3L:4252360-4252480 1.0000 120 chr3L:7980735-7980855 1.0000 120 chr3R:9328974-9329094 1.0000 120 chr3L:10285031-10285151 1.0000 120 chr3R:4905949-4906069 1.0000 120 chr3R:8264152-8264272 1.0000 120 chr2L:20294081-20294201 1.0000 120 chr3R:17603808-17603928 1.0000 120 chr3R:31458193-31458313 1.0000 120 chr3R:21408539-21408659 1.0000 120 chr3R:22727544-22727664 1.0000 120 chr2R:21721018-21721138 1.0000 120 chr3R:22794094-22794214 1.0000 120 chrX:5579679-5579799 1.0000 120 chrX:5593997-5594117 1.0000 120 chr3R:31086509-31086629 1.0000 120 chr2R:9039548-9039668 1.0000 120 chr2L:3372516-3372636 1.0000 120 chr3L:21574397-21574517 1.0000 120 chr3R:20908807-20908927 1.0000 120 chr3L:4135877-4135997 1.0000 120 chr3R:30946485-30946605 1.0000 120 chr2L:564042-564162 1.0000 120 chr2R:17616775-17616895 1.0000 120 chr3R:12650710-12650830 1.0000 120 chr3R:6708973-6709093 1.0000 120 chr3R:6780185-6780305 1.0000 120 chr2L:17603280-17603400 1.0000 120 chr2L:12520360-12520480 1.0000 120 chr3R:12222214-12222334 1.0000 120 chr3R:6709720-6709840 1.0000 120 chr3L:15589511-15589631 1.0000 120 chr2R:9590070-9590190 1.0000 120 chr2R:18179780-18179900 1.0000 120 chr2R:8572731-8572851 1.0000 120 chr2R:6984046-6984166 1.0000 120 chr3L:16930651-16930771 1.0000 120 chrX:12012281-12012401 1.0000 120 chrX:23007612-23007732 1.0000 120 chr2R:17469848-17469968 1.0000 120 chr3R:4962762-4962882 1.0000 120 chr2R:6631814-6631934 1.0000 120 chr3R:28831456-28831576 1.0000 120 chr2L:850016-850136 1.0000 120 chr2R:10124959-10125079 1.0000 120 chrX:16695807-16695927 1.0000 120 chr3R:4081875-4081995 1.0000 120 chr3L:13845424-13845544 1.0000 120 chr3R:6870956-6871076 1.0000 120 chr3R:17449545-17449665 1.0000 120 chr2R:12585705-12585825 1.0000 120 chr3R:15407295-15407415 1.0000 120 chrX:21060782-21060902 1.0000 120 chrX:19193421-19193541 1.0000 120 chr3R:14286088-14286208 1.0000 120 chr3L:20295186-20295306 1.0000 120 chr2L:10380118-10380238 1.0000 120 chrX:6986619-6986739 1.0000 120 chrX:13421151-13421271 1.0000 120 chr2L:12457755-12457875 1.0000 120 chr3L:8448794-8448914 1.0000 120 chr2L:158133-158253 1.0000 120 chrX:18937000-18937120 1.0000 120 chr3L:5753048-5753168 1.0000 120 chr3R:13076671-13076791 1.0000 120 chr3R:14739895-14740015 1.0000 120 chr3L:16090337-16090457 1.0000 120 chr2R:13234802-13234922 1.0000 120 chr2R:13565726-13565846 1.0000 120 chrX:5754982-5755102 1.0000 120 chr2R:24337633-24337753 1.0000 120 chrX:22455712-22455832 1.0000 120 chr3L:11494370-11494490 1.0000 120 chr3R:24318957-24319077 1.0000 120 chr2R:21659701-21659821 1.0000 120 chr2R:15657971-15658091 1.0000 120 chr2L:9330658-9330778 1.0000 120 chr3L:9836761-9836881 1.0000 120 chrX:21035385-21035505 1.0000 120 chr3L:9019391-9019511 1.0000 120 chr2L:4462113-4462233 1.0000 120 chr3R:13683079-13683199 1.0000 120 chr2L:18702539-18702659 1.0000 120 chr3R:17733495-17733615 1.0000 120 chr2L:16049721-16049841 1.0000 120 chr3R:3374252-3374372 1.0000 120 chr3L:18618218-18618338 1.0000 120 chr3L:2881671-2881791 1.0000 120 chr3L:8175953-8176073 1.0000 120 chrX:18864390-18864510 1.0000 120 chr3L:9713480-9713600 1.0000 120 chr3R:25594390-25594510 1.0000 120 chrX:9089382-9089502 1.0000 120 chr2R:12884453-12884573 1.0000 120 chr2R:17792838-17792958 1.0000 120 chrX:18930324-18930444 1.0000 120 chrX:10730601-10730721 1.0000 120 chr2L:868068-868188 1.0000 120 chr3L:20241275-20241395 1.0000 120 chr3R:10053010-10053130 1.0000 120 chr3R:14098688-14098808 1.0000 120 chr3R:27437363-27437483 1.0000 120 chr3R:24221725-24221845 1.0000 120 chrX:16792372-16792492 1.0000 120 chr3R:4052868-4052988 1.0000 120 chr3R:6854441-6854561 1.0000 120 chr2R:24535385-24535505 1.0000 120 chr2R:15781304-15781424 1.0000 120 chr4:607597-607717 1.0000 120 chr2L:21051952-21052072 1.0000 120 chr2R:8051312-8051432 1.0000 120 chr3R:16403753-16403873 1.0000 120 chr3L:13866882-13867002 1.0000 120 chrX:8805884-8806004 1.0000 120 chr2R:22689772-22689892 1.0000 120 chr2R:24187586-24187706 1.0000 120 chr3R:13309272-13309392 1.0000 120 chr2R:9860659-9860779 1.0000 120 chr4:989551-989671 1.0000 120 chr2R:11297458-11297578 1.0000 120 chrX:524442-524562 1.0000 120 chr2R:21634599-21634719 1.0000 120 chr2R:8925765-8925885 1.0000 120 chr2L:2383059-2383179 1.0000 120 chrX:9283112-9283232 1.0000 120 chr3L:2590022-2590142 1.0000 120 chrX:17298020-17298140 1.0000 120 chr2L:10004757-10004877 1.0000 120 chrX:2158036-2158156 1.0000 120 chrX:20251228-20251348 1.0000 120 chr2R:9292380-9292500 1.0000 120 chr2R:13963654-13963774 1.0000 120 chr3L:441731-441851 1.0000 120 chr3R:4974720-4974840 1.0000 120 chrX:9687044-9687164 1.0000 120 chr2R:13829178-13829298 1.0000 120 chrX:21315976-21316096 1.0000 120 chr3R:30338221-30338341 1.0000 120 chr3R:25596545-25596665 1.0000 120 chr3R:16957869-16957989 1.0000 120 chr2R:20330775-20330895 1.0000 120 chr2R:18445708-18445828 1.0000 120 chr3L:4193880-4194000 1.0000 120 chr3R:30154023-30154143 1.0000 120 chr3R:31985768-31985888 1.0000 120 chr4:835010-835130 1.0000 120 chrX:18505204-18505324 1.0000 120 chr3R:6768420-6768540 1.0000 120 chr2R:12670143-12670263 1.0000 120 chr2R:8632639-8632759 1.0000 120 chrX:9497283-9497403 1.0000 120 chr3L:12530135-12530255 1.0000 120 chr2R:25076634-25076754 1.0000 120 chr2R:24783459-24783579 1.0000 120 chrX:8924932-8925052 1.0000 120 chr2R:17822466-17822586 1.0000 120 chr2R:13430843-13430963 1.0000 120 chrX:11325295-11325415 1.0000 120 chrX:16553098-16553218 1.0000 120 chr2L:20066319-20066439 1.0000 120 chr3L:17051295-17051415 1.0000 120 chr3L:15072321-15072441 1.0000 120 chrX:19495402-19495522 1.0000 120 chrX:18385220-18385340 1.0000 120 chr3R:25221514-25221634 1.0000 120 chr2L:2580162-2580282 1.0000 120 chrX:5770925-5771045 1.0000 120 chr3R:13877280-13877400 1.0000 120 chrX:19637072-19637192 1.0000 120 chr2L:8478129-8478249 1.0000 120 chr2R:15573917-15574037 1.0000 120 chr3R:8477489-8477609 1.0000 120 chr3L:1891056-1891176 1.0000 120 chr2R:9441411-9441531 1.0000 120 chr3R:26452636-26452756 1.0000 120 chr3R:5297446-5297566 1.0000 120 chr3L:4553514-4553634 1.0000 120 chr2R:19669087-19669207 1.0000 120 chr3L:18667240-18667360 1.0000 120 chr3L:11113714-11113834 1.0000 120 chr3R:25094777-25094897 1.0000 120 chrX:13612029-13612149 1.0000 120 chr3L:4092842-4092962 1.0000 120 chr3R:10677652-10677772 1.0000 120 chr3R:23249052-23249172 1.0000 120 chr2L:6966483-6966603 1.0000 120 chr2L:7885384-7885504 1.0000 120 chr2R:10886730-10886850 1.0000 120 chr2R:13507057-13507177 1.0000 120 chrX:7678953-7679073 1.0000 120 chrX:8560780-8560900 1.0000 120 chr2L:15748019-15748139 1.0000 120 chrX:15482322-15482442 1.0000 120 chr3L:9854797-9854917 1.0000 120 chr2L:3466066-3466186 1.0000 120 chr3L:19663752-19663872 1.0000 120 chr2L:740136-740256 1.0000 120 chr3R:14481577-14481697 1.0000 120 chr3L:14942934-14943054 1.0000 120 chr3R:14819981-14820101 1.0000 120 chr3R:7911543-7911663 1.0000 120 chrX:20391342-20391462 1.0000 120 chr3L:22136285-22136405 1.0000 120 chrX:529890-530010 1.0000 120 chr3L:5845579-5845699 1.0000 120 chr3L:5749768-5749888 1.0000 120 chrX:17159934-17160054 1.0000 120 chr3R:31572059-31572179 1.0000 120 chr2L:7890828-7890948 1.0000 120 chr3L:12794638-12794758 1.0000 120 chr2L:12040636-12040756 1.0000 120 chr3R:6908251-6908371 1.0000 120 chr2L:357895-358015 1.0000 120 chrX:20165902-20166022 1.0000 120 chr3R:29027174-29027294 1.0000 120 chr2R:7539665-7539785 1.0000 120 chr2L:10480122-10480242 1.0000 120 chr3L:18088153-18088273 1.0000 120 chr2R:23988422-23988542 1.0000 120 chr2L:17784820-17784940 1.0000 120 chr2R:10568482-10568602 1.0000 120 chrX:19353157-19353277 1.0000 120 chr2L:12434683-12434803 1.0000 120 chr3L:7339433-7339553 1.0000 120 chr3R:31059697-31059817 1.0000 120 chr3R:29503580-29503700 1.0000 120 chr3R:26535099-26535219 1.0000 120 chr2R:17420056-17420176 1.0000 120 chr3R:17604754-17604874 1.0000 120 chrX:8410451-8410571 1.0000 120 chr3R:29858957-29859077 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_HmgD/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/HmgD.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.265 C 0.241 G 0.234 T 0.26 Background letter frequencies (from file dataset with add-one prior applied): A 0.265 C 0.241 G 0.234 T 0.26 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RCWGCTKK MEME-1 width = 8 sites = 58 llr = 454 E-value = 3.9e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCWGCTKK MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5:4::::: pos.-specific C :a::a:12 probability G 5::a::45 matrix T ::6::a63 bits 2.1 * ** 1.9 * *** 1.7 * *** 1.5 * *** Relative 1.3 * *** Entropy 1.0 ****** (11.3 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACTGCTTG consensus G A GT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCWGCTKK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:18088153-18088273 90 2.79e-05 TCATGTGCAT ACTGCTTG TTGCACGAAA chr2L:740136-740256 86 2.79e-05 ACAGAATCAG ACTGCTTG CCAGGTTAAG chr3R:10677652-10677772 78 2.79e-05 CTGCTTGACT ACTGCTTG GGACCAGTTT chr2L:8478129-8478249 46 2.79e-05 AGCAGTTTTG ACTGCTTG TGTCTGCGAA chrX:16553098-16553218 11 2.79e-05 AACTGCTGCA ACTGCTTG ACTAACCGCG chr3R:6768420-6768540 41 2.79e-05 TGCATCGACA ACTGCTTG TCTGCCGTAG chr2R:17792838-17792958 20 2.79e-05 GCGACACGGC ACTGCTTG GAAATCAGTC chr2R:24337633-24337753 21 2.79e-05 CGATAGGTAT ACTGCTTG CTTAAAAGTT chrX:13421151-13421271 38 2.79e-05 CAATAAGAAA ACTGCTTG CACGTAAAAC chr3R:6870956-6871076 87 2.79e-05 GCTTGCATGA ACTGCTTG AGACCTTGTT chr3L:13845424-13845544 74 2.79e-05 CAGCATTTGC ACTGCTTG AACCGATAAC chr3R:31086509-31086629 14 2.79e-05 CCTCGCGTGC ACTGCTTG CTCGAGCAGA chr3R:21408539-21408659 68 2.79e-05 CAGTTGATGC ACTGCTTG CACATTGCGC chr3L:10285031-10285151 16 2.79e-05 TGCACAGCGC ACTGCTTG AACTGCTTGT chr3R:9328974-9329094 54 2.79e-05 ACTGCTTTGC ACTGCTTG CCTAGTGATA chr2R:15954943-15955063 14 2.79e-05 CGCCCATTAA ACTGCTTG CCAAGCAGTG chr3R:6709720-6709840 74 3.97e-05 tggtgctgct gctgctgg tggtgctgtg chr3R:14819981-14820101 71 5.30e-05 GCTTGAAAGC ACTGCTGG CCATTtgttg chr3R:14098688-14098808 31 8.09e-05 CCACCTGTTG GCAGCTTG ACTCACTAAA chr2L:18702539-18702659 32 8.09e-05 ACGAACTTCT GCAGCTTG AGAAGATCGT chrX:18937000-18937120 69 8.09e-05 GTTTACTTCC GCTGCTTT TGTTTGGCTT chr3R:6908251-6908371 54 1.12e-04 ACTGCTTTTT ACTGCTTT GCTTCGCTGC chr2R:13507057-13507177 44 1.12e-04 GCGTTGCCAG ACAGCTTG TTACACACAT chr3L:4092842-4092962 30 1.12e-04 ATTTGAATAC ACTGCTTT ACCACGTAAG chr3L:14674146-14674266 59 1.12e-04 ATACATGAAC ACTGCTTT GTGGATGAGC chrX:17159934-17160054 23 1.51e-04 AAGAAGCCAA GCTGCTGT TCCGATAGTA chr3R:25594390-25594510 44 1.51e-04 CTCTTCCCAC GCTGCTTC CGAAATCCTG chr3L:2881671-2881791 102 1.51e-04 ctgcattgtt gctgcttc tgacttgttg chr2R:12585705-12585825 51 1.51e-04 ATCCTGTGCT GCTGCTTC TTCTTTCTAA chr3R:28345449-28345569 35 1.51e-04 TACAAAATGT GCTGCTGT TATTTGCTTG chr2R:24783459-24783579 84 1.95e-04 TGGCTTGCAA ACAGCTGG TTGTCGCTGC chr3R:17733495-17733615 99 1.95e-04 GCCCTGGCGA ACAGCTGG CTTTGAAAAG chrX:12012281-12012401 76 1.95e-04 GCGTTGCCAG ACAGCTGG CAACTCCAAT chr3L:18667240-18667360 109 2.09e-04 AAGTAAGTTG GCAGCTTT GCGC chr3L:4553514-4553634 49 2.09e-04 TTTCTTGCAA GCAGCTTT TGATGGACTT chr2L:10004757-10004877 84 2.09e-04 GCCACGAGCA GCAGCTTT TGATCGTGTG chr3R:20908807-20908927 20 2.09e-04 AATGTTCAGC GCAGCTTT AAAGCTCTTA chr3L:1206800-1206920 31 2.09e-04 CACGTAGCAG GCAGCTTT TGTCAGAGGT chr2R:17822466-17822586 40 2.38e-04 aTGAGCCTTT GCTGCTGC CACTGCACGG chr2R:18179780-18179900 20 2.38e-04 cgccactgtt gctgctgc tgACCATGTT chr2R:13963654-13963774 40 2.52e-04 GCTCGGTCAC ACTGCTGC AAACAGTGCT chr2L:2383059-2383179 96 2.52e-04 ATAAGAGCTG ACTGCTGC ATAATCGGCT chr2L:12457755-12457875 106 2.52e-04 actcgactgc actgctgc CGTTCTC chrX:5770925-5771045 92 2.79e-04 GCCCACGCCA GCAGCTGT CTCCCTTCCA chr3R:25596545-25596665 25 2.79e-04 TTCCCTCGGC GCAGCTGT TCCTGCGACC chr3L:8448794-8448914 36 2.79e-04 GCTAAGAAGT GCAGCTGT CCTGATTTGC chrX:16695807-16695927 37 2.79e-04 ACACAAGCTG GCAGCTGT AAAATTGCAG chr3R:17603808-17603928 107 2.79e-04 GCACACATGG GCAGCTGT GCGTGG chr3L:12794638-12794758 92 3.10e-04 TGAAGCCAAA ACAGCTGT GTTTGCCATC chr3R:13877280-13877400 43 3.22e-04 AACAGTATTA GCAGCTGC TAACAAGGGG chr2R:15657971-15658091 42 3.22e-04 AAGGGGCGTG GCAGCTGC CCCCGCCGAC chr3L:7980735-7980855 40 3.22e-04 AGAACCGGGT GCAGCTGC TCGAATTATT chr2R:21721018-21721138 73 3.36e-04 GGGCTCCGTG ACAGCTGC GGGTgccacc chr3L:7339433-7339553 106 3.48e-04 GGAAAAATCT GCTGCTCG GCCTGGA chrX:18505204-18505324 29 3.48e-04 ATTGTGATTA GCTGCTCG CTATAGGCTG chr2R:22689772-22689892 48 3.48e-04 GAGTGCGATC GCTGCTCG CTACCTGCGA chrX:8924932-8925052 85 3.77e-04 GGCATCGAAG GCTGCTTA CAGGTGTTTA chr2L:12520360-12520480 34 4.19e-04 GGCTATGTAA ACTGCTTA GTCAAACCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCWGCTKK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18088153-18088273 2.8e-05 89_[+1]_23 chr2L:740136-740256 2.8e-05 85_[+1]_27 chr3R:10677652-10677772 2.8e-05 77_[+1]_35 chr2L:8478129-8478249 2.8e-05 45_[+1]_67 chrX:16553098-16553218 2.8e-05 10_[+1]_102 chr3R:6768420-6768540 2.8e-05 40_[+1]_72 chr2R:17792838-17792958 2.8e-05 19_[+1]_93 chr2R:24337633-24337753 2.8e-05 20_[+1]_92 chrX:13421151-13421271 2.8e-05 37_[+1]_75 chr3R:6870956-6871076 2.8e-05 86_[+1]_26 chr3L:13845424-13845544 2.8e-05 73_[+1]_39 chr3R:31086509-31086629 2.8e-05 13_[+1]_99 chr3R:21408539-21408659 2.8e-05 67_[+1]_45 chr3L:10285031-10285151 2.8e-05 15_[+1]_97 chr3R:9328974-9329094 2.8e-05 53_[+1]_59 chr2R:15954943-15955063 2.8e-05 13_[+1]_99 chr3R:6709720-6709840 4e-05 73_[+1]_39 chr3R:14819981-14820101 5.3e-05 70_[+1]_42 chr3R:14098688-14098808 8.1e-05 30_[+1]_82 chr2L:18702539-18702659 8.1e-05 31_[+1]_81 chrX:18937000-18937120 8.1e-05 68_[+1]_44 chr3R:6908251-6908371 0.00011 53_[+1]_59 chr2R:13507057-13507177 0.00011 43_[+1]_69 chr3L:4092842-4092962 0.00011 29_[+1]_83 chr3L:14674146-14674266 0.00011 58_[+1]_54 chrX:17159934-17160054 0.00015 22_[+1]_90 chr3R:25594390-25594510 0.00015 43_[+1]_69 chr3L:2881671-2881791 0.00015 101_[+1]_11 chr2R:12585705-12585825 0.00015 50_[+1]_62 chr3R:28345449-28345569 0.00015 34_[+1]_78 chr2R:24783459-24783579 0.00019 83_[+1]_29 chr3R:17733495-17733615 0.00019 98_[+1]_14 chrX:12012281-12012401 0.00019 75_[+1]_37 chr3L:18667240-18667360 0.00021 108_[+1]_4 chr3L:4553514-4553634 0.00021 48_[+1]_64 chr2L:10004757-10004877 0.00021 83_[+1]_29 chr3R:20908807-20908927 0.00021 19_[+1]_93 chr3L:1206800-1206920 0.00021 30_[+1]_82 chr2R:17822466-17822586 0.00024 39_[+1]_73 chr2R:18179780-18179900 0.00024 19_[+1]_93 chr2R:13963654-13963774 0.00025 39_[+1]_73 chr2L:2383059-2383179 0.00025 95_[+1]_17 chr2L:12457755-12457875 0.00025 105_[+1]_7 chrX:5770925-5771045 0.00028 91_[+1]_21 chr3R:25596545-25596665 0.00028 24_[+1]_88 chr3L:8448794-8448914 0.00028 35_[+1]_77 chrX:16695807-16695927 0.00028 36_[+1]_76 chr3R:17603808-17603928 0.00028 106_[+1]_6 chr3L:12794638-12794758 0.00031 91_[+1]_21 chr3R:13877280-13877400 0.00032 42_[+1]_70 chr2R:15657971-15658091 0.00032 41_[+1]_71 chr3L:7980735-7980855 0.00032 39_[+1]_73 chr2R:21721018-21721138 0.00034 72_[+1]_40 chr3L:7339433-7339553 0.00035 105_[+1]_7 chrX:18505204-18505324 0.00035 28_[+1]_84 chr2R:22689772-22689892 0.00035 47_[+1]_65 chrX:8924932-8925052 0.00038 84_[+1]_28 chr2L:12520360-12520480 0.00042 33_[+1]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCWGCTKK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCWGCTKK width=8 seqs=58 chr3L:18088153-18088273 ( 90) ACTGCTTG 1 chr2L:740136-740256 ( 86) ACTGCTTG 1 chr3R:10677652-10677772 ( 78) ACTGCTTG 1 chr2L:8478129-8478249 ( 46) ACTGCTTG 1 chrX:16553098-16553218 ( 11) ACTGCTTG 1 chr3R:6768420-6768540 ( 41) ACTGCTTG 1 chr2R:17792838-17792958 ( 20) ACTGCTTG 1 chr2R:24337633-24337753 ( 21) ACTGCTTG 1 chrX:13421151-13421271 ( 38) ACTGCTTG 1 chr3R:6870956-6871076 ( 87) ACTGCTTG 1 chr3L:13845424-13845544 ( 74) ACTGCTTG 1 chr3R:31086509-31086629 ( 14) ACTGCTTG 1 chr3R:21408539-21408659 ( 68) ACTGCTTG 1 chr3L:10285031-10285151 ( 16) ACTGCTTG 1 chr3R:9328974-9329094 ( 54) ACTGCTTG 1 chr2R:15954943-15955063 ( 14) ACTGCTTG 1 chr3R:6709720-6709840 ( 74) GCTGCTGG 1 chr3R:14819981-14820101 ( 71) ACTGCTGG 1 chr3R:14098688-14098808 ( 31) GCAGCTTG 1 chr2L:18702539-18702659 ( 32) GCAGCTTG 1 chrX:18937000-18937120 ( 69) GCTGCTTT 1 chr3R:6908251-6908371 ( 54) ACTGCTTT 1 chr2R:13507057-13507177 ( 44) ACAGCTTG 1 chr3L:4092842-4092962 ( 30) ACTGCTTT 1 chr3L:14674146-14674266 ( 59) ACTGCTTT 1 chrX:17159934-17160054 ( 23) GCTGCTGT 1 chr3R:25594390-25594510 ( 44) GCTGCTTC 1 chr3L:2881671-2881791 ( 102) GCTGCTTC 1 chr2R:12585705-12585825 ( 51) GCTGCTTC 1 chr3R:28345449-28345569 ( 35) GCTGCTGT 1 chr2R:24783459-24783579 ( 84) ACAGCTGG 1 chr3R:17733495-17733615 ( 99) ACAGCTGG 1 chrX:12012281-12012401 ( 76) ACAGCTGG 1 chr3L:18667240-18667360 ( 109) GCAGCTTT 1 chr3L:4553514-4553634 ( 49) GCAGCTTT 1 chr2L:10004757-10004877 ( 84) GCAGCTTT 1 chr3R:20908807-20908927 ( 20) GCAGCTTT 1 chr3L:1206800-1206920 ( 31) GCAGCTTT 1 chr2R:17822466-17822586 ( 40) GCTGCTGC 1 chr2R:18179780-18179900 ( 20) GCTGCTGC 1 chr2R:13963654-13963774 ( 40) ACTGCTGC 1 chr2L:2383059-2383179 ( 96) ACTGCTGC 1 chr2L:12457755-12457875 ( 106) ACTGCTGC 1 chrX:5770925-5771045 ( 92) GCAGCTGT 1 chr3R:25596545-25596665 ( 25) GCAGCTGT 1 chr3L:8448794-8448914 ( 36) GCAGCTGT 1 chrX:16695807-16695927 ( 37) GCAGCTGT 1 chr3R:17603808-17603928 ( 107) GCAGCTGT 1 chr3L:12794638-12794758 ( 92) ACAGCTGT 1 chr3R:13877280-13877400 ( 43) GCAGCTGC 1 chr2R:15657971-15658091 ( 42) GCAGCTGC 1 chr3L:7980735-7980855 ( 40) GCAGCTGC 1 chr2R:21721018-21721138 ( 73) ACAGCTGC 1 chr3L:7339433-7339553 ( 106) GCTGCTCG 1 chrX:18505204-18505324 ( 29) GCTGCTCG 1 chr2R:22689772-22689892 ( 48) GCTGCTCG 1 chrX:8924932-8925052 ( 85) GCTGCTTA 1 chr2L:12520360-12520480 ( 34) ACTGCTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCWGCTKK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1759 E= 3.9e-002 96 -1250 105 -1250 -1250 205 -1250 -1250 45 -1250 -1250 129 -1250 -1250 210 -1250 -1250 205 -1250 -1250 -1250 -1250 -1250 194 -1250 -222 70 113 -294 -22 99 17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCWGCTKK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 3.9e-002 0.517241 0.000000 0.482759 0.000000 0.000000 1.000000 0.000000 0.000000 0.362069 0.000000 0.000000 0.637931 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.051724 0.379310 0.568966 0.034483 0.206897 0.465517 0.293103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCWGCTKK MEME-1 regular expression -------------------------------------------------------------------------------- [AG]C[TA]GCT[TG][GTC] -------------------------------------------------------------------------------- Time 7.46 secs. ******************************************************************************** ******************************************************************************** MOTIF CAAGCAGY MEME-2 width = 8 sites = 36 llr = 311 E-value = 2.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAGCAGY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 29a::9:: pos.-specific C 61::a::3 probability G 1::a:1a: matrix T 1::::::7 bits 2.1 ** 1.9 *** * 1.7 ***** 1.5 ***** Relative 1.3 ****** Entropy 1.0 ******* (12.5 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAGCAGT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCAGY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:740136-740256 41 1.54e-05 TGCACTGCTT CAAGCAGT TATATTCGTA chr3L:4092842-4092962 80 1.54e-05 TCAACCGTGG CAAGCAGT GCATAACCGC chr3L:4553514-4553634 2 1.54e-05 G CAAGCAGT ACTAAACAAT chr2L:8478129-8478249 105 1.54e-05 AGATCGCGCG CAAGCAGT TTGAACGG chr3R:13877280-13877400 2 1.54e-05 G CAAGCAGT ATCTGTGTGC chrX:16553098-16553218 50 1.54e-05 CGCTGGCCAG CAAGCAGT GAAATAAGCA chr3R:30154023-30154143 53 1.54e-05 GAAAGCAGTG CAAGCAGT TCGTACGCTG chrX:8805884-8806004 90 1.54e-05 CCGAATGCGG CAAGCAGT GCTCGCATAT chr2L:16049721-16049841 55 1.54e-05 AAGGGGAAAT CAAGCAGT GGAAGGGGAA chr3R:17449545-17449665 20 1.54e-05 ATATCGACCT CAAGCAGT TCGTCTTTCA chr3R:6780185-6780305 10 1.54e-05 ATTTTCTCT CAAGCAGT TTCTAAACAA chrX:11800020-11800140 58 1.54e-05 GCAGTGCAGC CAAGCAGT CCAGCAGCCG chr2R:15954943-15955063 23 1.54e-05 AACTGCTTGC CAAGCAGT GGTGATTAGT chr2R:21721018-21721138 27 2.97e-05 TGGCCCAGTC CAAGCAGC CCAGCCTCCT chr3R:6908251-6908371 28 4.66e-05 AACACAATAT AAAGCAGT ACATCTAGAC chr3R:21408539-21408659 6 4.66e-05 TCTCT AAAGCAGT TCTCTTGCTG chr3L:14674146-14674266 95 4.66e-05 AGCTGTTAAG AAAGCAGT GCACTGTAAA chr2R:25076634-25076754 69 6.32e-05 GGCGTTCTAT TAAGCAGT TTAAGCGAAA chr2L:12520360-12520480 103 6.32e-05 GTTTGAAAAC TAAGCAGT AGTGCTGTAA chr3R:5297446-5297566 56 7.72e-05 TCAACATTGG CCAGCAGT GTGACCGCAG chr3R:13076671-13076791 54 7.72e-05 TGGTGGTGCC CCAGCAGT CGGTGGTGGT chr2R:17469848-17469968 86 7.72e-05 AGTTGGACAC CCAGCAGT TGCAGGGGAA chrX:8410451-8410571 28 1.08e-04 CGGCTGAAGC AAAGCAGC GGAGCCCAAG chr3L:9854797-9854917 25 1.08e-04 TTGTGCGCTT AAAGCAGC CAGCTTTTTG chr2R:10124959-10125079 59 1.08e-04 cggcagagga aaagcagc gcggcagcag chr3L:22136285-22136405 90 1.23e-04 TGCCGCAAAC TAAGCAGC ACATAATTTG chr3R:25594390-25594510 76 1.23e-04 CGGCAGCGCC TAAGCAGC GAAAACAACA chr3R:5438910-5439030 52 1.23e-04 ATTATATATG TAAGCAGC AAAGCGAGTT chr2R:21659701-21659821 79 1.36e-04 GTTCCACCTC CCAGCAGC GGACCGTGCT chr3L:11494370-11494490 66 1.36e-04 CCAGCACCGC CCAGCAGC ACCACCCACT chrX:19637072-19637192 62 1.64e-04 GGAGCGCAGC GAAGCAGC GGGATAGGCA chr2L:20066319-20066439 44 1.64e-04 CGTTCGCTTG CAAGCGGT CACACAGTTG chr3L:12530135-12530255 54 1.64e-04 CTTATGCGGC CAAGCGGT CACACTGCGC chrX:16792372-16792492 60 1.64e-04 ggaggaagaa gaagcagc agcagaaaag chr3R:8312490-8312610 59 1.64e-04 TCAACGGGAA GAAGCAGC TCCTCGATGA chrX:529890-530010 32 2.24e-04 GGCTAAGGGC CAAGCAAT AAGTGATGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCAGY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:740136-740256 1.5e-05 40_[+2]_72 chr3L:4092842-4092962 1.5e-05 79_[+2]_33 chr3L:4553514-4553634 1.5e-05 1_[+2]_111 chr2L:8478129-8478249 1.5e-05 104_[+2]_8 chr3R:13877280-13877400 1.5e-05 1_[+2]_111 chrX:16553098-16553218 1.5e-05 49_[+2]_63 chr3R:30154023-30154143 1.5e-05 52_[+2]_60 chrX:8805884-8806004 1.5e-05 89_[+2]_23 chr2L:16049721-16049841 1.5e-05 54_[+2]_58 chr3R:17449545-17449665 1.5e-05 19_[+2]_93 chr3R:6780185-6780305 1.5e-05 9_[+2]_103 chrX:11800020-11800140 1.5e-05 57_[+2]_55 chr2R:15954943-15955063 1.5e-05 22_[+2]_90 chr2R:21721018-21721138 3e-05 26_[+2]_86 chr3R:6908251-6908371 4.7e-05 27_[+2]_85 chr3R:21408539-21408659 4.7e-05 5_[+2]_107 chr3L:14674146-14674266 4.7e-05 94_[+2]_18 chr2R:25076634-25076754 6.3e-05 68_[+2]_44 chr2L:12520360-12520480 6.3e-05 102_[+2]_10 chr3R:5297446-5297566 7.7e-05 55_[+2]_57 chr3R:13076671-13076791 7.7e-05 53_[+2]_59 chr2R:17469848-17469968 7.7e-05 85_[+2]_27 chrX:8410451-8410571 0.00011 27_[+2]_85 chr3L:9854797-9854917 0.00011 24_[+2]_88 chr2R:10124959-10125079 0.00011 58_[+2]_54 chr3L:22136285-22136405 0.00012 89_[+2]_23 chr3R:25594390-25594510 0.00012 75_[+2]_37 chr3R:5438910-5439030 0.00012 51_[+2]_61 chr2R:21659701-21659821 0.00014 78_[+2]_34 chr3L:11494370-11494490 0.00014 65_[+2]_47 chrX:19637072-19637192 0.00016 61_[+2]_51 chr2L:20066319-20066439 0.00016 43_[+2]_69 chr3L:12530135-12530255 0.00016 53_[+2]_59 chrX:16792372-16792492 0.00016 59_[+2]_53 chr3R:8312490-8312610 0.00016 58_[+2]_54 chrX:529890-530010 0.00022 31_[+2]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCAGY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAGCAGY width=8 seqs=36 chr2L:740136-740256 ( 41) CAAGCAGT 1 chr3L:4092842-4092962 ( 80) CAAGCAGT 1 chr3L:4553514-4553634 ( 2) CAAGCAGT 1 chr2L:8478129-8478249 ( 105) CAAGCAGT 1 chr3R:13877280-13877400 ( 2) CAAGCAGT 1 chrX:16553098-16553218 ( 50) CAAGCAGT 1 chr3R:30154023-30154143 ( 53) CAAGCAGT 1 chrX:8805884-8806004 ( 90) CAAGCAGT 1 chr2L:16049721-16049841 ( 55) CAAGCAGT 1 chr3R:17449545-17449665 ( 20) CAAGCAGT 1 chr3R:6780185-6780305 ( 10) CAAGCAGT 1 chrX:11800020-11800140 ( 58) CAAGCAGT 1 chr2R:15954943-15955063 ( 23) CAAGCAGT 1 chr2R:21721018-21721138 ( 27) CAAGCAGC 1 chr3R:6908251-6908371 ( 28) AAAGCAGT 1 chr3R:21408539-21408659 ( 6) AAAGCAGT 1 chr3L:14674146-14674266 ( 95) AAAGCAGT 1 chr2R:25076634-25076754 ( 69) TAAGCAGT 1 chr2L:12520360-12520480 ( 103) TAAGCAGT 1 chr3R:5297446-5297566 ( 56) CCAGCAGT 1 chr3R:13076671-13076791 ( 54) CCAGCAGT 1 chr2R:17469848-17469968 ( 86) CCAGCAGT 1 chrX:8410451-8410571 ( 28) AAAGCAGC 1 chr3L:9854797-9854917 ( 25) AAAGCAGC 1 chr2R:10124959-10125079 ( 59) AAAGCAGC 1 chr3L:22136285-22136405 ( 90) TAAGCAGC 1 chr3R:25594390-25594510 ( 76) TAAGCAGC 1 chr3R:5438910-5439030 ( 52) TAAGCAGC 1 chr2R:21659701-21659821 ( 79) CCAGCAGC 1 chr3L:11494370-11494490 ( 66) CCAGCAGC 1 chrX:19637072-19637192 ( 62) GAAGCAGC 1 chr2L:20066319-20066439 ( 44) CAAGCGGT 1 chr3L:12530135-12530255 ( 54) CAAGCGGT 1 chrX:16792372-16792492 ( 60) GAAGCAGC 1 chr3R:8312490-8312610 ( 59) GAAGCAGC 1 chrX:529890-530010 ( 32) CAAGCAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCAGY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.463 E= 2.9e-001 -67 134 -149 -91 170 -79 -1181 -1181 192 -1181 -1181 -1181 -1181 -1181 210 -1181 -1181 205 -1181 -1181 183 -1181 -207 -1181 -325 -1181 206 -1181 -1181 47 -1181 136 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCAGY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 2.9e-001 0.166667 0.611111 0.083333 0.138889 0.861111 0.138889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.944444 0.000000 0.055556 0.000000 0.027778 0.000000 0.972222 0.000000 0.000000 0.333333 0.000000 0.666667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCAGY MEME-2 regular expression -------------------------------------------------------------------------------- CAAGCAG[TC] -------------------------------------------------------------------------------- Time 13.67 secs. ******************************************************************************** ******************************************************************************** MOTIF WATCGATA MEME-3 width = 8 sites = 34 llr = 311 E-value = 6.0e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif WATCGATA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4a:::a:6 pos.-specific C 1::a:::: probability G ::::a::1 matrix T 6:a:::a3 bits 2.1 ** 1.9 ****** 1.7 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.0 ****** (13.2 bits) 0.8 ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:29027174-29027294 51 1.84e-05 AATCGAAACA TATCGATA TATCGCGTGA chr3L:12794638-12794758 63 1.84e-05 GTTATCGCTC TATCGATA GTTGGCGCAA chr3R:31572059-31572179 49 1.84e-05 ACATCGGAGC TATCGATA CTTAACTGGA chr3R:25221514-25221634 10 1.84e-05 CTACACATA TATCGATA ACAAATCTGA chrX:11325295-11325415 49 1.84e-05 GAACACTCAC TATCGATA GGCCGTGTCT chr3R:27437363-27437483 68 1.84e-05 CCAAACACGC TATCGATA TATAGAGCAG chrX:9089382-9089502 109 1.84e-05 AGCCGCGCGT TATCGATA ACAG chr3R:24318957-24319077 23 1.84e-05 CGCCACCAAC TATCGATA CGCAAAGGCA chr2R:24337633-24337753 8 1.84e-05 AGTTTTA TATCGATA GGTATACTGC chrX:19193421-19193541 48 1.84e-05 CTATCGAGGC TATCGATA GCAGGCTAGC chr2R:15954943-15955063 82 1.84e-05 AGTGCGAATA TATCGATA ATCGATAGCA chr2R:23988422-23988542 51 3.72e-05 TCTAGGCAGC AATCGATA CCCAGAGCCA chrX:13612029-13612149 25 3.72e-05 GTTATCGGCA AATCGATA GTTTCCAGGG chr2L:8478129-8478249 77 3.72e-05 GTTATAAAGT AATCGATA ACACATTCAA chr2R:24535385-24535505 85 3.72e-05 CGATAGCTGC AATCGATA TTCGGCGCCT chrX:21035385-21035505 39 3.72e-05 TGGGTATCGT AATCGATA GTTGCGAAAT chr3L:9836761-9836881 64 3.72e-05 GATTACATTT AATCGATA CTTGCGTATC chrX:23007612-23007732 3 3.72e-05 TA AATCGATA GCATTCCAGC chr2R:5693258-5693378 107 3.72e-05 TTCAGACTAA AATCGATA TATCAT chr3R:29503580-29503700 19 5.53e-05 TTCGCCGGAC TATCGATT GTCGTTGCCA chr3L:14942934-14943054 1 5.53e-05 . TATCGATT ATTTTTGGAG chr3R:31985768-31985888 41 5.53e-05 GGGATCGATA TATCGATT GCGTTTTTGA chr3L:13866882-13867002 107 5.53e-05 CGCTCGCGCC TATCGATT TGTCGA chrX:5754982-5755102 41 5.53e-05 TATCGAATAC TATCGATT TACCGCCAAG chr3L:7339433-7339553 87 7.38e-05 ACGAAGTGCG AATCGATT TGGAAAAATC chr2L:357895-358015 26 7.38e-05 TATCGAGAGG AATCGATT AAATGAAAAT chr4:835010-835130 26 7.38e-05 ATTACAATCA AATCGATT ATTCATTTAT chr3L:16090337-16090457 89 7.38e-05 CTACTTTTGC AATCGATT CTTGTTCGAT chrX:17159934-17160054 39 9.01e-05 GTTCCGATAG TATCGATG AGCCTGCCAT chr2L:7885384-7885504 51 9.01e-05 TAGGCAGAAA TATCGATG GCACAGCACA chrX:21315976-21316096 23 9.01e-05 CTAGCGTTTT TATCGATG CCGATTGCTC chrX:19495402-19495522 53 1.07e-04 GCGGAACAGC AATCGATG GGTCCACACT chrX:20165902-20166022 30 1.24e-04 TGGGACGATA CATCGATA GATTCGAGAA chr2R:11297458-11297578 67 1.24e-04 CCCTACGATT CATCGATA TAGTGAAGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29027174-29027294 1.8e-05 50_[+3]_62 chr3L:12794638-12794758 1.8e-05 62_[+3]_50 chr3R:31572059-31572179 1.8e-05 48_[+3]_64 chr3R:25221514-25221634 1.8e-05 9_[+3]_103 chrX:11325295-11325415 1.8e-05 48_[+3]_64 chr3R:27437363-27437483 1.8e-05 67_[+3]_45 chrX:9089382-9089502 1.8e-05 108_[+3]_4 chr3R:24318957-24319077 1.8e-05 22_[+3]_90 chr2R:24337633-24337753 1.8e-05 7_[+3]_105 chrX:19193421-19193541 1.8e-05 47_[+3]_65 chr2R:15954943-15955063 1.8e-05 81_[+3]_31 chr2R:23988422-23988542 3.7e-05 50_[+3]_62 chrX:13612029-13612149 3.7e-05 24_[+3]_88 chr2L:8478129-8478249 3.7e-05 76_[+3]_36 chr2R:24535385-24535505 3.7e-05 84_[+3]_28 chrX:21035385-21035505 3.7e-05 38_[+3]_74 chr3L:9836761-9836881 3.7e-05 63_[+3]_49 chrX:23007612-23007732 3.7e-05 2_[+3]_110 chr2R:5693258-5693378 3.7e-05 106_[+3]_6 chr3R:29503580-29503700 5.5e-05 18_[+3]_94 chr3L:14942934-14943054 5.5e-05 [+3]_112 chr3R:31985768-31985888 5.5e-05 40_[+3]_72 chr3L:13866882-13867002 5.5e-05 106_[+3]_6 chrX:5754982-5755102 5.5e-05 40_[+3]_72 chr3L:7339433-7339553 7.4e-05 86_[+3]_26 chr2L:357895-358015 7.4e-05 25_[+3]_87 chr4:835010-835130 7.4e-05 25_[+3]_87 chr3L:16090337-16090457 7.4e-05 88_[+3]_24 chrX:17159934-17160054 9e-05 38_[+3]_74 chr2L:7885384-7885504 9e-05 50_[+3]_62 chrX:21315976-21316096 9e-05 22_[+3]_90 chrX:19495402-19495522 0.00011 52_[+3]_60 chrX:20165902-20166022 0.00012 29_[+3]_83 chr2R:11297458-11297578 0.00012 66_[+3]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WATCGATA width=8 seqs=34 chr3R:29027174-29027294 ( 51) TATCGATA 1 chr3L:12794638-12794758 ( 63) TATCGATA 1 chr3R:31572059-31572179 ( 49) TATCGATA 1 chr3R:25221514-25221634 ( 10) TATCGATA 1 chrX:11325295-11325415 ( 49) TATCGATA 1 chr3R:27437363-27437483 ( 68) TATCGATA 1 chrX:9089382-9089502 ( 109) TATCGATA 1 chr3R:24318957-24319077 ( 23) TATCGATA 1 chr2R:24337633-24337753 ( 8) TATCGATA 1 chrX:19193421-19193541 ( 48) TATCGATA 1 chr2R:15954943-15955063 ( 82) TATCGATA 1 chr2R:23988422-23988542 ( 51) AATCGATA 1 chrX:13612029-13612149 ( 25) AATCGATA 1 chr2L:8478129-8478249 ( 77) AATCGATA 1 chr2R:24535385-24535505 ( 85) AATCGATA 1 chrX:21035385-21035505 ( 39) AATCGATA 1 chr3L:9836761-9836881 ( 64) AATCGATA 1 chrX:23007612-23007732 ( 3) AATCGATA 1 chr2R:5693258-5693378 ( 107) AATCGATA 1 chr3R:29503580-29503700 ( 19) TATCGATT 1 chr3L:14942934-14943054 ( 1) TATCGATT 1 chr3R:31985768-31985888 ( 41) TATCGATT 1 chr3L:13866882-13867002 ( 107) TATCGATT 1 chrX:5754982-5755102 ( 41) TATCGATT 1 chr3L:7339433-7339553 ( 87) AATCGATT 1 chr2L:357895-358015 ( 26) AATCGATT 1 chr4:835010-835130 ( 26) AATCGATT 1 chr3L:16090337-16090457 ( 89) AATCGATT 1 chrX:17159934-17160054 ( 39) TATCGATG 1 chr2L:7885384-7885504 ( 51) TATCGATG 1 chrX:21315976-21316096 ( 23) TATCGATG 1 chrX:19495402-19495522 ( 53) AATCGATG 1 chrX:20165902-20166022 ( 30) CATCGATA 1 chr2R:11297458-11297578 ( 67) CATCGATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4922 E= 6.0e-008 53 -203 -1173 110 192 -1173 -1173 -1173 -1173 -1173 -1173 194 -1173 205 -1173 -1173 -1173 -1173 210 -1173 192 -1173 -1173 -1173 -1173 -1173 -1173 194 122 -1173 -99 2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 6.0e-008 0.382353 0.058824 0.000000 0.558824 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.617647 0.000000 0.117647 0.264706 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-3 regular expression -------------------------------------------------------------------------------- [TA]ATCGAT[AT] -------------------------------------------------------------------------------- Time 19.81 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGYG MEME-4 width = 8 sites = 15 llr = 146 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::2: pos.-specific C ::::2:5: probability G :a:a:a:a matrix T a:a:8:3: bits 2.1 * * * * 1.9 **** * * 1.7 **** * * 1.5 **** * * Relative 1.3 ****** * Entropy 1.0 ****** * (14.1 bits) 0.8 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGCG consensus C T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:12040636-12040756 59 1.27e-05 ATGTTGATTG TGTGTGCG GCACTGTGAA chrX:8560780-8560900 95 1.27e-05 AATGTCACTC TGTGTGCG GGTGTGTGGG chr3R:13877280-13877400 13 1.27e-05 AAGCAGTATC TGTGTGCG AGAGAACGGG chr2R:17822466-17822586 96 1.27e-05 TACGATCGTA TGTGTGCG TACGTGATTT chr3R:17603808-17603928 59 1.27e-05 TACGCTCATG TGTGTGCG TTCGGCTCAC chrX:7320914-7321034 25 1.27e-05 TTTTGCAGTG TGTGTGCG CGTTGCAAGT chrX:10730601-10730721 21 2.64e-05 GAAACGAGCC TGTGTGTG TATGTGACTT chr2L:17603280-17603400 75 2.64e-05 TTTCTAAGGA TGTGTGTG TACTCGGTTG chr3L:4627185-4627305 22 2.64e-05 TGTATGCGTT TGTGTGTG TATGTACCTG chr2R:22689772-22689892 33 4.04e-05 ctatcGCATC TGTGTGAG TGCGATCGCT chrX:18864390-18864510 1 4.04e-05 . tgtgtgag tgagtgaggg chr2R:6631814-6631934 16 4.04e-05 TTAATCCCTA TGTGTGAG TAAGCCCGTG chr2R:10568482-10568602 50 5.21e-05 TTTGTCCCAC TGTGCGCG TGATGTGCCG chr3R:16351172-16351292 93 5.21e-05 GGTTAGGGCA TGTGCGCG CAAAAGAGTG chr3R:6709720-6709840 88 6.48e-05 ctggtggtgc tgtgcgtg gtggtggtgc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:12040636-12040756 1.3e-05 58_[+4]_54 chrX:8560780-8560900 1.3e-05 94_[+4]_18 chr3R:13877280-13877400 1.3e-05 12_[+4]_100 chr2R:17822466-17822586 1.3e-05 95_[+4]_17 chr3R:17603808-17603928 1.3e-05 58_[+4]_54 chrX:7320914-7321034 1.3e-05 24_[+4]_88 chrX:10730601-10730721 2.6e-05 20_[+4]_92 chr2L:17603280-17603400 2.6e-05 74_[+4]_38 chr3L:4627185-4627305 2.6e-05 21_[+4]_91 chr2R:22689772-22689892 4e-05 32_[+4]_80 chrX:18864390-18864510 4e-05 [+4]_112 chr2R:6631814-6631934 4e-05 15_[+4]_97 chr2R:10568482-10568602 5.2e-05 49_[+4]_63 chr3R:16351172-16351292 5.2e-05 92_[+4]_20 chr3R:6709720-6709840 6.5e-05 87_[+4]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGYG width=8 seqs=15 chr2L:12040636-12040756 ( 59) TGTGTGCG 1 chrX:8560780-8560900 ( 95) TGTGTGCG 1 chr3R:13877280-13877400 ( 13) TGTGTGCG 1 chr2R:17822466-17822586 ( 96) TGTGTGCG 1 chr3R:17603808-17603928 ( 59) TGTGTGCG 1 chrX:7320914-7321034 ( 25) TGTGTGCG 1 chrX:10730601-10730721 ( 21) TGTGTGTG 1 chr2L:17603280-17603400 ( 75) TGTGTGTG 1 chr3L:4627185-4627305 ( 22) TGTGTGTG 1 chr2R:22689772-22689892 ( 33) TGTGTGAG 1 chrX:18864390-18864510 ( 1) TGTGTGAG 1 chr2R:6631814-6631934 ( 16) TGTGTGAG 1 chr2R:10568482-10568602 ( 50) TGTGCGCG 1 chr3R:16351172-16351292 ( 93) TGTGCGCG 1 chr3R:6709720-6709840 ( 88) TGTGCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 1.0e+004 -1055 -1055 -1055 194 -1055 -1055 210 -1055 -1055 -1055 -1055 194 -1055 -1055 210 -1055 -1055 -27 -1055 162 -1055 -1055 210 -1055 -41 115 -1055 4 -1055 -1055 210 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.0e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 1.000000 0.000000 0.200000 0.533333 0.000000 0.266667 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-4 regular expression -------------------------------------------------------------------------------- TGTG[TC]G[CTA]G -------------------------------------------------------------------------------- Time 25.90 secs. ******************************************************************************** ******************************************************************************** MOTIF TKTTGTTG MEME-5 width = 8 sites = 18 llr = 170 E-value = 1.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKTTGTTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::2:: probability G :6::a1:9 matrix T a4aa:7a1 bits 2.1 * 1.9 * *** * 1.7 * *** ** 1.5 * *** ** Relative 1.3 * *** ** Entropy 1.0 ***** ** (13.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTTGTTG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTGTTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:31059697-31059817 71 1.52e-05 TGCCTGTGTT TGTTGTTG TTTTCGCCTT chrX:19353157-19353277 32 1.52e-05 TGCGTCGCAG TGTTGTTG CAAACGCCGG chrX:17159934-17160054 76 1.52e-05 TTTGGTCATT TGTTGTTG CTCGCCAGGG chr2L:10004757-10004877 1 1.52e-05 . tgttgttg ttgccgctgt chr2R:10124959-10125079 15 1.52e-05 CGGCCACTTT TGTTGTTG CCACAATCAA chr2R:18179780-18179900 76 1.52e-05 CACTGCCGTT TGTTGTTG TTATCGCACG chr3R:22727544-22727664 68 1.52e-05 CCCTTGCCAT TGTTGTTG TTTTGCATTT chr2R:10568482-10568602 18 3.21e-05 TATATGAACT TTTTGTTG AGCACAAGAC chr2L:2580162-2580282 45 3.21e-05 AACTCATGTT TTTTGTTG CTTGGATGTA chrX:11325295-11325415 95 3.21e-05 ACTTTATTGT TTTTGTTG TTTTCCTTTT chr2R:12585705-12585825 10 3.21e-05 CATCATCTT TTTTGTTG CTCTGTCCTC chr3L:4627185-4627305 65 3.21e-05 TTCTGTGTGT TTTTGTTG CTTTTTCGTT chr3R:29503580-29503700 97 4.62e-05 AAACGGCGCG TGTTGCTG CGTGTCGGTC chr3R:14819981-14820101 105 4.62e-05 ctcttggtat tgttgctg ctgctgct chr2L:21051952-21052072 51 6.19e-05 TGTTTCAGTA TTTTGCTG CGTCTTTTTA chr3R:24221725-24221845 104 6.19e-05 GGTCAATGCT TTTTGCTG AGGACTCGG chr2L:12434683-12434803 92 7.56e-05 GGCGTGCGTG TGTTGGtg gcattgcttt chr2L:12040636-12040756 19 9.25e-05 AAATGCTACG TGTTGTTT TTCTCAAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTGTTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:31059697-31059817 1.5e-05 70_[+5]_42 chrX:19353157-19353277 1.5e-05 31_[+5]_81 chrX:17159934-17160054 1.5e-05 75_[+5]_37 chr2L:10004757-10004877 1.5e-05 [+5]_112 chr2R:10124959-10125079 1.5e-05 14_[+5]_98 chr2R:18179780-18179900 1.5e-05 75_[+5]_37 chr3R:22727544-22727664 1.5e-05 67_[+5]_45 chr2R:10568482-10568602 3.2e-05 17_[+5]_95 chr2L:2580162-2580282 3.2e-05 44_[+5]_68 chrX:11325295-11325415 3.2e-05 94_[+5]_18 chr2R:12585705-12585825 3.2e-05 9_[+5]_103 chr3L:4627185-4627305 3.2e-05 64_[+5]_48 chr3R:29503580-29503700 4.6e-05 96_[+5]_16 chr3R:14819981-14820101 4.6e-05 104_[+5]_8 chr2L:21051952-21052072 6.2e-05 50_[+5]_62 chr3R:24221725-24221845 6.2e-05 103_[+5]_9 chr2L:12434683-12434803 7.6e-05 91_[+5]_21 chr2L:12040636-12040756 9.3e-05 18_[+5]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTGTTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKTTGTTG width=8 seqs=18 chr3R:31059697-31059817 ( 71) TGTTGTTG 1 chrX:19353157-19353277 ( 32) TGTTGTTG 1 chrX:17159934-17160054 ( 76) TGTTGTTG 1 chr2L:10004757-10004877 ( 1) TGTTGTTG 1 chr2R:10124959-10125079 ( 15) TGTTGTTG 1 chr2R:18179780-18179900 ( 76) TGTTGTTG 1 chr3R:22727544-22727664 ( 68) TGTTGTTG 1 chr2R:10568482-10568602 ( 18) TTTTGTTG 1 chr2L:2580162-2580282 ( 45) TTTTGTTG 1 chrX:11325295-11325415 ( 95) TTTTGTTG 1 chr2R:12585705-12585825 ( 10) TTTTGTTG 1 chr3L:4627185-4627305 ( 65) TTTTGTTG 1 chr3R:29503580-29503700 ( 97) TGTTGCTG 1 chr3R:14819981-14820101 ( 105) TGTTGCTG 1 chr2L:21051952-21052072 ( 51) TTTTGCTG 1 chr3R:24221725-24221845 ( 104) TTTTGCTG 1 chr2L:12434683-12434803 ( 92) TGTTGGTG 1 chr2L:12040636-12040756 ( 19) TGTTGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTGTTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 1.4e+004 -1081 -1081 -1081 194 -1081 -1081 139 58 -1081 -1081 -1081 194 -1081 -1081 -1081 194 -1081 -1081 210 -1081 -1081 -12 -207 147 -1081 -1081 -1081 194 -1081 -1081 201 -222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTGTTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.4e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.611111 0.388889 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.222222 0.055556 0.722222 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.944444 0.055556 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTGTTG MEME-5 regular expression -------------------------------------------------------------------------------- T[GT]TTG[TC]TG -------------------------------------------------------------------------------- Time 32.13 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24313270-24313390 8.49e-01 120 chr3L:4627185-4627305 2.82e-03 21_[+4(2.64e-05)]_35_[+5(3.21e-05)]_\ 48 chr3R:16351172-16351292 1.29e-02 92_[+4(5.21e-05)]_20 chr2L:7856489-7856609 6.62e-01 120 chr3L:1206800-1206920 1.35e-01 120 chrX:16840058-16840178 3.42e-01 120 chr2L:19393828-19393948 4.61e-01 120 chr3L:14674146-14674266 9.62e-03 94_[+2(4.66e-05)]_18 chr3L:20097390-20097510 9.27e-01 120 chr2R:23601872-23601992 7.16e-01 120 chr2R:15954943-15955063 9.92e-06 13_[+1(2.79e-05)]_1_[+2(1.54e-05)]_\ 51_[+3(1.84e-05)]_31 chr3R:8312490-8312610 5.66e-02 120 chr2R:5693258-5693378 2.49e-02 106_[+3(3.72e-05)]_6 chr3R:24279498-24279618 6.59e-01 120 chr3R:5438910-5439030 1.53e-01 120 chrX:17077230-17077350 8.38e-03 50_[+4(2.64e-05)]_[+4(2.64e-05)]_35_\ [+4(2.64e-05)]_11 chrX:11800020-11800140 1.14e-01 44_[+2(1.54e-05)]_5_[+2(1.54e-05)]_\ 55 chrX:7320914-7321034 5.54e-03 24_[+4(1.27e-05)]_88 chr3R:28345449-28345569 1.42e-01 120 chr3L:4252360-4252480 3.37e-01 120 chr3L:7980735-7980855 8.20e-02 120 chr3R:9328974-9329094 3.22e-02 53_[+1(2.79e-05)]_59 chr3L:10285031-10285151 6.41e-02 15_[+1(2.79e-05)]_1_[+1(2.79e-05)]_\ 88 chr3R:4905949-4906069 8.23e-01 120 chr3R:8264152-8264272 7.13e-01 120 chr2L:20294081-20294201 1.31e-01 120 chr3R:17603808-17603928 9.73e-03 58_[+4(1.27e-05)]_45_[+4(6.48e-05)]_\ 1 chr3R:31458193-31458313 4.95e-01 120 chr3R:21408539-21408659 1.03e-03 5_[+2(4.66e-05)]_6_[+1(1.31e-05)]_2_\ [+2(9.21e-05)]_6_[+1(1.31e-05)]_2_[+2(9.21e-05)]_6_[+1(2.79e-05)]_45 chr3R:22727544-22727664 1.10e-01 67_[+5(1.52e-05)]_45 chr2R:21721018-21721138 2.52e-02 26_[+2(2.97e-05)]_86 chr3R:22794094-22794214 3.64e-01 120 chrX:5579679-5579799 8.62e-01 120 chrX:5593997-5594117 6.02e-01 120 chr3R:31086509-31086629 1.07e-03 13_[+1(2.79e-05)]_99 chr2R:9039548-9039668 2.89e-01 120 chr2L:3372516-3372636 6.95e-01 120 chr3L:21574397-21574517 2.79e-01 120 chr3R:20908807-20908927 1.38e-01 120 chr3L:4135877-4135997 8.93e-01 120 chr3R:30946485-30946605 5.62e-01 120 chr2L:564042-564162 3.63e-01 120 chr2R:17616775-17616895 7.69e-01 120 chr3R:12650710-12650830 2.34e-01 120 chr3R:6708973-6709093 4.15e-01 120 chr3R:6780185-6780305 1.53e-02 9_[+2(1.54e-05)]_7_[+2(2.97e-05)]_\ 88 chr2L:17603280-17603400 5.33e-02 74_[+4(2.64e-05)]_38 chr2L:12520360-12520480 3.40e-02 102_[+2(6.32e-05)]_10 chr3R:12222214-12222334 3.71e-01 120 chr3R:6709720-6709840 9.19e-04 73_[+1(3.97e-05)]_6_[+4(6.48e-05)]_\ 11_[+1(3.97e-05)]_6 chr3L:15589511-15589631 7.93e-01 120 chr2R:9590070-9590190 2.14e-01 120 chr2R:18179780-18179900 1.44e-02 15_[+5(4.62e-05)]_10_[+5(1.52e-05)]_\ 34_[+5(1.52e-05)]_37 chr2R:8572731-8572851 6.50e-01 120 chr2R:6984046-6984166 8.88e-01 120 chr3L:16930651-16930771 3.08e-01 120 chrX:12012281-12012401 2.57e-02 120 chrX:23007612-23007732 9.53e-02 2_[+3(3.72e-05)]_110 chr2R:17469848-17469968 8.63e-02 85_[+2(7.72e-05)]_27 chr3R:4962762-4962882 4.10e-01 120 chr2R:6631814-6631934 1.48e-01 15_[+4(4.04e-05)]_97 chr3R:28831456-28831576 5.95e-01 120 chr2L:850016-850136 6.42e-01 120 chr2R:10124959-10125079 2.43e-03 14_[+5(1.52e-05)]_98 chrX:16695807-16695927 2.77e-01 120 chr3R:4081875-4081995 6.65e-01 120 chr3L:13845424-13845544 1.79e-02 51_[+1(2.79e-05)]_14_[+1(2.79e-05)]_\ 39 chr3R:6870956-6871076 8.91e-03 73_[+1(2.79e-05)]_5_[+1(2.79e-05)]_\ 26 chr3R:17449545-17449665 2.25e-02 19_[+2(1.54e-05)]_93 chr2R:12585705-12585825 9.68e-03 9_[+5(3.21e-05)]_103 chr3R:15407295-15407415 4.23e-01 120 chrX:21060782-21060902 5.78e-01 120 chrX:19193421-19193541 3.82e-02 47_[+3(1.84e-05)]_65 chr3R:14286088-14286208 9.13e-02 120 chr3L:20295186-20295306 2.90e-01 120 chr2L:10380118-10380238 7.55e-01 120 chrX:6986619-6986739 2.89e-01 120 chrX:13421151-13421271 8.57e-02 37_[+1(2.79e-05)]_75 chr2L:12457755-12457875 7.16e-02 120 chr3L:8448794-8448914 3.64e-03 120 chr2L:158133-158253 6.94e-01 120 chrX:18937000-18937120 8.51e-03 68_[+1(8.09e-05)]_44 chr3L:5753048-5753168 9.47e-01 120 chr3R:13076671-13076791 6.79e-02 53_[+2(7.72e-05)]_59 chr3R:14739895-14740015 9.78e-01 120 chr3L:16090337-16090457 1.09e-01 88_[+3(7.38e-05)]_24 chr2R:13234802-13234922 4.83e-01 120 chr2R:13565726-13565846 9.50e-01 120 chrX:5754982-5755102 7.10e-02 40_[+3(5.53e-05)]_72 chr2R:24337633-24337753 1.02e-03 7_[+3(1.84e-05)]_5_[+1(2.79e-05)]_\ 63_[+1(2.79e-05)]_21 chrX:22455712-22455832 6.73e-01 120 chr3L:11494370-11494490 2.62e-01 120 chr3R:24318957-24319077 1.11e-02 22_[+3(1.84e-05)]_90 chr2R:21659701-21659821 3.91e-02 120 chr2R:15657971-15658091 6.81e-03 120 chr2L:9330658-9330778 9.31e-01 120 chr3L:9836761-9836881 6.31e-02 63_[+3(3.72e-05)]_49 chrX:21035385-21035505 5.28e-02 38_[+3(3.72e-05)]_74 chr3L:9019391-9019511 3.41e-01 120 chr2L:4462113-4462233 6.70e-01 120 chr3R:13683079-13683199 4.06e-01 120 chr2L:18702539-18702659 1.67e-01 31_[+1(8.09e-05)]_81 chr3R:17733495-17733615 3.48e-01 120 chr2L:16049721-16049841 3.54e-02 1_[+2(1.54e-05)]_6_[+2(9.21e-05)]_\ 10_[+2(4.66e-05)]_13_[+2(1.54e-05)]_58 chr3R:3374252-3374372 1.90e-01 120 chr3L:18618218-18618338 3.57e-01 120 chr3L:2881671-2881791 7.15e-03 97_[+5(4.62e-05)]_15 chr3L:8175953-8176073 9.80e-01 120 chrX:18864390-18864510 1.61e-01 [+4(4.04e-05)]_112 chr3L:9713480-9713600 7.71e-01 120 chr3R:25594390-25594510 5.26e-02 120 chrX:9089382-9089502 2.50e-02 108_[+3(1.84e-05)]_4 chr2R:12884453-12884573 4.71e-02 120 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chr3L:5845579-5845699 5.59e-01 120 chr3L:5749768-5749888 8.77e-01 120 chrX:17159934-17160054 1.38e-04 38_[+3(9.01e-05)]_29_[+5(1.52e-05)]_\ 37 chr3R:31572059-31572179 1.05e-01 48_[+3(1.84e-05)]_64 chr2L:7890828-7890948 9.01e-01 120 chr3L:12794638-12794758 1.59e-03 62_[+3(1.84e-05)]_50 chr2L:12040636-12040756 1.27e-03 18_[+5(9.25e-05)]_32_[+4(1.27e-05)]_\ 54 chr3R:6908251-6908371 6.29e-03 27_[+2(4.66e-05)]_85 chr2L:357895-358015 2.90e-01 4_[+3(9.01e-05)]_13_[+3(7.38e-05)]_\ 87 chrX:20165902-20166022 2.41e-02 120 chr3R:29027174-29027294 3.42e-02 50_[+3(1.84e-05)]_62 chr2R:7539665-7539785 8.37e-01 120 chr2L:10480122-10480242 8.12e-01 120 chr3L:18088153-18088273 9.11e-02 37_[+1(2.79e-05)]_44_[+1(2.79e-05)]_\ 23 chr2R:23988422-23988542 1.45e-02 50_[+3(3.72e-05)]_13_[+3(9.01e-05)]_\ 41 chr2L:17784820-17784940 3.25e-01 120 chr2R:10568482-10568602 2.63e-03 17_[+5(3.21e-05)]_24_[+4(5.21e-05)]_\ 63 chrX:19353157-19353277 4.59e-02 31_[+5(1.52e-05)]_81 chr2L:12434683-12434803 3.15e-02 91_[+5(7.56e-05)]_21 chr3L:7339433-7339553 5.42e-02 86_[+3(7.38e-05)]_26 chr3R:31059697-31059817 2.35e-02 70_[+5(1.52e-05)]_42 chr3R:29503580-29503700 2.02e-03 18_[+3(5.53e-05)]_70_[+5(4.62e-05)]_\ 16 chr3R:26535099-26535219 6.08e-01 120 chr2R:17420056-17420176 8.97e-01 120 chr3R:17604754-17604874 8.79e-01 120 chrX:8410451-8410571 3.04e-01 120 chr3R:29858957-29859077 3.42e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************