******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hand.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:24073919-24074039 1.0000 120 chr3R:9488120-9488240 1.0000 120 chrX:20448324-20448444 1.0000 120 chr2L:17876141-17876261 1.0000 120 chr2L:7931324-7931444 1.0000 120 chr2R:21417146-21417266 1.0000 120 chr3L:17941743-17941863 1.0000 120 chr3L:19961899-19962019 1.0000 120 chr3R:31363775-31363895 1.0000 120 chr2R:24945421-24945541 1.0000 120 chr3R:18910996-18911116 1.0000 120 chr3L:3492472-3492592 1.0000 120 chr3L:5665488-5665608 1.0000 120 chr3R:5525210-5525330 1.0000 120 chr2R:6589495-6589615 1.0000 120 chr2R:21780666-21780786 1.0000 120 chrX:7120344-7120464 1.0000 120 chrX:18058304-18058424 1.0000 120 chr3L:11869415-11869535 1.0000 120 chr3R:20956249-20956369 1.0000 120 chr2L:8607383-8607503 1.0000 120 chr2L:2501924-2502044 1.0000 120 chrX:9431554-9431674 1.0000 120 chr2L:18267937-18268057 1.0000 120 chr2L:4084375-4084495 1.0000 120 chr3R:15119885-15120005 1.0000 120 chr2R:9387042-9387162 1.0000 120 chr2L:9400358-9400478 1.0000 120 chr3R:24467381-24467501 1.0000 120 chr3L:952306-952426 1.0000 120 chr2R:18686998-18687118 1.0000 120 chr3R:11771889-11772009 1.0000 120 chr3R:7076424-7076544 1.0000 120 chr3R:24474901-24475021 1.0000 120 chr2R:16916232-16916352 1.0000 120 chr2R:16911870-16911990 1.0000 120 chr3R:28429709-28429829 1.0000 120 chr3R:13091766-13091886 1.0000 120 chr3L:19009576-19009696 1.0000 120 chr3L:7349460-7349580 1.0000 120 chr2R:13098808-13098928 1.0000 120 chr2R:22033384-22033504 1.0000 120 chr2L:2348628-2348748 1.0000 120 chr3R:6463196-6463316 1.0000 120 chrX:14446922-14447042 1.0000 120 chr3R:17818884-17819004 1.0000 120 chr3L:4000828-4000948 1.0000 120 chr3R:29651599-29651719 1.0000 120 chr3L:4010152-4010272 1.0000 120 chr2L:3737793-3737913 1.0000 120 chr2L:1230853-1230973 1.0000 120 chr2R:15156319-15156439 1.0000 120 chr3R:31630556-31630676 1.0000 120 chr2R:9756297-9756417 1.0000 120 chr2R:16770325-16770445 1.0000 120 chr3R:26123155-26123275 1.0000 120 chrX:18125616-18125736 1.0000 120 chr3R:24485387-24485507 1.0000 120 chr3R:28035418-28035538 1.0000 120 chr3R:18508394-18508514 1.0000 120 chr3L:20221437-20221557 1.0000 120 chrX:13023879-13023999 1.0000 120 chr3R:24091685-24091805 1.0000 120 chr3L:20907108-20907228 1.0000 120 chr3L:11556790-11556910 1.0000 120 chrX:16585616-16585736 1.0000 120 chr3R:21809126-21809246 1.0000 120 chrX:9520341-9520461 1.0000 120 chr2R:24709665-24709785 1.0000 120 chr2L:19800839-19800959 1.0000 120 chr3L:10827370-10827490 1.0000 120 chr2R:11641818-11641938 1.0000 120 chrX:2912704-2912824 1.0000 120 chrX:19818793-19818913 1.0000 120 chr3L:10827569-10827689 1.0000 120 chr3R:24093537-24093657 1.0000 120 chrX:16633283-16633403 1.0000 120 chr2R:23910100-23910220 1.0000 120 chr2L:9864512-9864632 1.0000 120 chr3R:29626044-29626164 1.0000 120 chr3L:9466812-9466932 1.0000 120 chrX:12073713-12073833 1.0000 120 chr3L:917331-917451 1.0000 120 chr3R:30550214-30550334 1.0000 120 chrX:12916883-12917003 1.0000 120 chr3R:13600647-13600767 1.0000 120 chr2L:128505-128625 1.0000 120 chr3R:29978779-29978899 1.0000 120 chr2L:3755287-3755407 1.0000 120 chrX:2834692-2834812 1.0000 120 chr2L:19138449-19138569 1.0000 120 chr3R:22822833-22822953 1.0000 120 chr2R:20434026-20434146 1.0000 120 chrX:19453309-19453429 1.0000 120 chrX:14598918-14599038 1.0000 120 chr3L:5297431-5297551 1.0000 120 chr3R:29866803-29866923 1.0000 120 chr3R:26671773-26671893 1.0000 120 chr3L:17448089-17448209 1.0000 120 chr2R:24694420-24694540 1.0000 120 chr2L:14616103-14616223 1.0000 120 chr3L:7222258-7222378 1.0000 120 chrX:16581860-16581980 1.0000 120 chr2R:19354810-19354930 1.0000 120 chr3L:21192145-21192265 1.0000 120 chr2L:2733143-2733263 1.0000 120 chr2R:22789418-22789538 1.0000 120 chr2R:12546675-12546795 1.0000 120 chrX:10756102-10756222 1.0000 120 chr2L:11086532-11086652 1.0000 120 chr3L:19231254-19231374 1.0000 120 chr3R:27426919-27427039 1.0000 120 chr3L:17625121-17625241 1.0000 120 chr3L:5657716-5657836 1.0000 120 chr2R:23154660-23154780 1.0000 120 chrX:18467985-18468105 1.0000 120 chr3R:25152544-25152664 1.0000 120 chr2L:11628441-11628561 1.0000 120 chrX:5847621-5847741 1.0000 120 chr3R:31636655-31636775 1.0000 120 chr3R:4359782-4359902 1.0000 120 chr2R:10347594-10347714 1.0000 120 chr2L:4936472-4936592 1.0000 120 chr2R:23819977-23820097 1.0000 120 chr2L:1043730-1043850 1.0000 120 chr2R:10192394-10192514 1.0000 120 chrX:12870022-12870142 1.0000 120 chrX:9004532-9004652 1.0000 120 chr3L:11409826-11409946 1.0000 120 chr2R:13245316-13245436 1.0000 120 chr2L:14141374-14141494 1.0000 120 chr3R:11024847-11024967 1.0000 120 chr2R:17435628-17435748 1.0000 120 chr3L:12874308-12874428 1.0000 120 chr2R:23819340-23819460 1.0000 120 chr3R:9851712-9851832 1.0000 120 chr3R:25968655-25968775 1.0000 120 chr2L:20808360-20808480 1.0000 120 chr2R:24638480-24638600 1.0000 120 chr3L:11450635-11450755 1.0000 120 chr3L:14847515-14847635 1.0000 120 chr3L:7013822-7013942 1.0000 120 chr3R:23612264-23612384 1.0000 120 chr3R:20950144-20950264 1.0000 120 chr3L:19969387-19969507 1.0000 120 chr2R:22508136-22508256 1.0000 120 chr2R:9603399-9603519 1.0000 120 chr2L:2883642-2883762 1.0000 120 chr2R:7758708-7758828 1.0000 120 chrX:6092402-6092522 1.0000 120 chrX:13208241-13208361 1.0000 120 chrX:15304379-15304499 1.0000 120 chr2L:8366211-8366331 1.0000 120 chr3R:12657065-12657185 1.0000 120 chr3R:12728380-12728500 1.0000 120 chr3L:15502015-15502135 1.0000 120 chr3L:10599683-10599803 1.0000 120 chrX:9638951-9639071 1.0000 120 chr3R:14351605-14351725 1.0000 120 chr3L:4010351-4010471 1.0000 120 chr3R:14878236-14878356 1.0000 120 chr3L:11863618-11863738 1.0000 120 chr2L:3730269-3730389 1.0000 120 chr3R:28297620-28297740 1.0000 120 chr3R:17955862-17955982 1.0000 120 chr2R:10400189-10400309 1.0000 120 chr3R:26555955-26556075 1.0000 120 chr3R:12543080-12543200 1.0000 120 chr3R:4746518-4746638 1.0000 120 chr2R:19971416-19971536 1.0000 120 chr3R:7089268-7089388 1.0000 120 chrX:4691376-4691496 1.0000 120 chr2R:21611409-21611529 1.0000 120 chr2L:1619366-1619486 1.0000 120 chr2R:23997288-23997408 1.0000 120 chr3L:12796323-12796443 1.0000 120 chr2L:8088040-8088160 1.0000 120 chr3R:8712823-8712943 1.0000 120 chr2R:18374599-18374719 1.0000 120 chr2R:24738645-24738765 1.0000 120 chr2R:15155083-15155203 1.0000 120 chr2L:18548842-18548962 1.0000 120 chrX:4849552-4849672 1.0000 120 chr3R:13802370-13802490 1.0000 120 chr3R:28118246-28118366 1.0000 120 chr3R:30114508-30114628 1.0000 120 chr2R:12925851-12925971 1.0000 120 chr2R:11629349-11629469 1.0000 120 chrX:656428-656548 1.0000 120 chr3L:22889095-22889215 1.0000 120 chr3L:13903374-13903494 1.0000 120 chr3L:3411897-3412017 1.0000 120 chr2L:3939010-3939130 1.0000 120 chr2R:22616985-22617105 1.0000 120 chr2L:1637968-1638088 1.0000 120 chr3L:15034468-15034588 1.0000 120 chrX:7300413-7300533 1.0000 120 chr2L:19233447-19233567 1.0000 120 chr2R:14488022-14488142 1.0000 120 chr3R:26333405-26333525 1.0000 120 chr2R:12218883-12219003 1.0000 120 chrX:2161085-2161205 1.0000 120 chrX:5970490-5970610 1.0000 120 chr3L:3350823-3350943 1.0000 120 chrX:9120086-9120206 1.0000 120 chr3R:16476565-16476685 1.0000 120 chr3R:4419505-4419625 1.0000 120 chr2R:8336260-8336380 1.0000 120 chr2L:17558217-17558337 1.0000 120 chr3L:21321996-21322116 1.0000 120 chr2R:16783896-16784016 1.0000 120 chr3R:7075105-7075225 1.0000 120 chr2R:19125612-19125732 1.0000 120 chr2L:7790719-7790839 1.0000 120 chrX:8780812-8780932 1.0000 120 chr3L:3801451-3801571 1.0000 120 chr2L:8941968-8942088 1.0000 120 chr2L:19019166-19019286 1.0000 120 chr3R:16213794-16213914 1.0000 120 chr3L:5182379-5182499 1.0000 120 chr2L:15179140-15179260 1.0000 120 chr2L:16791120-16791240 1.0000 120 chr3R:9938567-9938687 1.0000 120 chr3L:20221638-20221758 1.0000 120 chr3R:8980832-8980952 1.0000 120 chr2L:19285624-19285744 1.0000 120 chr2L:5569685-5569805 1.0000 120 chr3R:8577863-8577983 1.0000 120 chr2R:24292827-24292947 1.0000 120 chr3R:28959166-28959286 1.0000 120 chr2R:23656769-23656889 1.0000 120 chr3L:2913417-2913537 1.0000 120 chrX:16086227-16086347 1.0000 120 chrX:3176358-3176478 1.0000 120 chr3R:21180484-21180604 1.0000 120 chrX:16671163-16671283 1.0000 120 chr2L:1214567-1214687 1.0000 120 chrX:5095703-5095823 1.0000 120 chr3L:11278706-11278826 1.0000 120 chr2R:24139183-24139303 1.0000 120 chr3L:19908649-19908769 1.0000 120 chr2L:2944593-2944713 1.0000 120 chrX:8924958-8925078 1.0000 120 chr3L:311679-311799 1.0000 120 chr2L:1207628-1207748 1.0000 120 chr3L:19087980-19088100 1.0000 120 chr2L:18845193-18845313 1.0000 120 chr3R:10024171-10024291 1.0000 120 chr2L:2171674-2171794 1.0000 120 chrX:16580065-16580185 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Hand/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hand.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.328 C 0.175 G 0.167 T 0.33 Background letter frequencies (from file dataset with add-one prior applied): A 0.328 C 0.175 G 0.167 T 0.33 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RCRGCKGC MEME-1 width = 8 sites = 16 llr = 163 E-value = 4.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCRGCKGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4:4::::: pos.-specific C :911a:1a probability G 6159:59: matrix T :::::5:: bits 2.6 * * 2.3 ** ** 2.1 * ** ** 1.8 * ** ** Relative 1.5 * ** ** Entropy 1.3 ** ** ** (14.7 bits) 1.0 ** ***** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGGCGGC consensus A A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRGCKGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:9638951-9639071 77 2.07e-06 TCTGACTGCT GCGGCTGC TTTATTTTAT chr2R:23910100-23910220 71 2.07e-06 GACACATTTC GCGGCTGC TGTAAGCCAA chr2R:24694420-24694540 42 3.44e-06 GCCAGCTTCG GCAGCGGC ATTCCGACTG chr3L:19009576-19009696 104 3.44e-06 GGCACAAGTG GCAGCGGC GTCCGAAAC chr2R:10192394-10192514 43 4.81e-06 ACGCCGAACG ACGGCGGC GAACATCATC chr3R:7075105-7075225 34 7.51e-06 ttgtgtgagt gCAGCTGC TTTTGAATTT chr2R:8336260-8336380 38 7.51e-06 TGCGGTTGTC GCAGCTGC CGCCTGTTGC chr2R:16783896-16784016 15 1.09e-05 TTACATAGGT GGGGCGGC GAAAGCCTAT chr3R:29626044-29626164 104 1.09e-05 CTCCCAGTGC ACGGCTGC GTGAGTGCG chrX:16633283-16633403 88 1.09e-05 CCATGATGGC GGGGCGGC AATTTACAGA chr2R:10400189-10400309 1 1.36e-05 . ACAGCGGC TCAATAGGAA chr3R:8712823-8712943 94 2.37e-05 ATCCCCTTTA GCGGCGCC CCTGCTGATA chr2L:128505-128625 14 2.37e-05 ATACTGCGTT ACAGCTGC TAAAAGAACA chr3R:18508394-18508514 19 2.37e-05 AGAAAACTAA ACAGCTGC TCAAATAGAT chr3R:12657065-12657185 15 2.79e-05 CGATTAGAAT ACCGCGGC TTGTTGGCCA chr2L:11086532-11086652 63 3.33e-05 ACACGAGCAC GCGCCTGC GCGCAAAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRGCKGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:9638951-9639071 2.1e-06 76_[+1]_36 chr2R:23910100-23910220 2.1e-06 70_[+1]_42 chr2R:24694420-24694540 3.4e-06 41_[+1]_71 chr3L:19009576-19009696 3.4e-06 103_[+1]_9 chr2R:10192394-10192514 4.8e-06 42_[+1]_70 chr3R:7075105-7075225 7.5e-06 33_[+1]_79 chr2R:8336260-8336380 7.5e-06 37_[+1]_75 chr2R:16783896-16784016 1.1e-05 14_[+1]_98 chr3R:29626044-29626164 1.1e-05 103_[+1]_9 chrX:16633283-16633403 1.1e-05 87_[+1]_25 chr2R:10400189-10400309 1.4e-05 [+1]_112 chr3R:8712823-8712943 2.4e-05 93_[+1]_19 chr2L:128505-128625 2.4e-05 13_[+1]_99 chr3R:18508394-18508514 2.4e-05 18_[+1]_94 chr3R:12657065-12657185 2.8e-05 14_[+1]_98 chr2L:11086532-11086652 3.3e-05 62_[+1]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRGCKGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCRGCKGC width=8 seqs=16 chrX:9638951-9639071 ( 77) GCGGCTGC 1 chr2R:23910100-23910220 ( 71) GCGGCTGC 1 chr2R:24694420-24694540 ( 42) GCAGCGGC 1 chr3L:19009576-19009696 ( 104) GCAGCGGC 1 chr2R:10192394-10192514 ( 43) ACGGCGGC 1 chr3R:7075105-7075225 ( 34) GCAGCTGC 1 chr2R:8336260-8336380 ( 38) GCAGCTGC 1 chr2R:16783896-16784016 ( 15) GGGGCGGC 1 chr3R:29626044-29626164 ( 104) ACGGCTGC 1 chrX:16633283-16633403 ( 88) GGGGCGGC 1 chr2R:10400189-10400309 ( 1) ACAGCGGC 1 chr3R:8712823-8712943 ( 94) GCGGCGCC 1 chr2L:128505-128625 ( 14) ACAGCTGC 1 chr3R:18508394-18508514 ( 19) ACAGCTGC 1 chr3R:12657065-12657185 ( 15) ACCGCGGC 1 chr2L:11086532-11086652 ( 63) GCGCCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRGCKGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 4.1e-001 19 -1064 190 -1064 -1064 232 -42 -1064 41 -148 158 -1064 -1064 -148 249 -1064 -1064 251 -1064 -1064 -1064 -1064 158 60 -1064 -148 249 -1064 -1064 251 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRGCKGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 4.1e-001 0.375000 0.000000 0.625000 0.000000 0.000000 0.875000 0.125000 0.000000 0.437500 0.062500 0.500000 0.000000 0.000000 0.062500 0.937500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.062500 0.937500 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRGCKGC MEME-1 regular expression -------------------------------------------------------------------------------- [GA]C[GA]GC[GT]GC -------------------------------------------------------------------------------- Time 7.75 secs. ******************************************************************************** ******************************************************************************** MOTIF SASWGYGC MEME-2 width = 8 sites = 45 llr = 360 E-value = 1.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SASWGYGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :5:5:::: pos.-specific C 517::4:7 probability G 5231a:a3 matrix T :2:4:6:: bits 2.6 * * 2.3 * * 2.1 * * 1.8 * ** Relative 1.5 * * * ** Entropy 1.3 * * * ** (11.6 bits) 1.0 * * **** 0.8 * * **** 0.5 * ****** 0.3 ******** 0.0 -------- Multilevel CACAGTGC consensus GGGT C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASWGYGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:28297620-28297740 65 1.59e-05 AGGTTAGTAT CACAGTGC AATAACGCTT chr3R:12657065-12657185 31 1.59e-05 GCTTGTTGGC CACAGTGC GTCACGAAAG chr3L:21192145-21192265 88 1.59e-05 CTCTTTTTGG GACAGTGC GACAcaacag chr3R:31630556-31630676 111 1.59e-05 TGACGAGGAC GACAGCGC AA chr2L:1207628-1207748 111 3.18e-05 TCCTTGGTCC CACTGTGC CT chr2R:23656769-23656889 69 3.18e-05 TCCTGACCGC CACTGTGC GCATGAGGCA chr2R:16916232-16916352 9 3.18e-05 AGTGATTA CACTGTGC AGTTTTATTG chr3R:7076424-7076544 76 3.18e-05 TTTTTGAGCC CACTGTGC GAACGCCTAA chr2R:21417146-21417266 40 3.18e-05 TGGCACTGTT CACTGCGC ATGTGGAGCT chrX:3176358-3176478 54 3.99e-05 ATTTCTGGCT GGCAGCGC GTCGCTCGGC chr2L:14616103-14616223 25 3.99e-05 CCATAAACTA GGCAGCGC TGCCGTCGCC chr3R:30114508-30114628 63 4.80e-05 CTTTCCTTTC CGCTGCGC ACAGCTGACG chr3R:4746518-4746638 9 7.17e-05 AGCACGGC GAGAGTGC GGGGGATCGA chr2R:24638480-24638600 68 7.17e-05 TCAATCATCC GCCAGCGC GTCCACTCGC chr2R:23819340-23819460 107 7.17e-05 ATGTATCACC CAGAGCGC TCTCGC chr3R:29626044-29626164 96 7.17e-05 TTCCGTTTCT CCCAGTGC ACGGCTGCGT chrX:7120344-7120464 98 7.17e-05 GGCATTTTCT GCCAGTGC ATATTCCCCC chr2L:3939010-3939130 85 9.54e-05 TTTGATAAAT CAGTGCGC CGAGTGACCA chr3R:13802370-13802490 54 9.54e-05 TCCATTACCG GCCTGCGC ATCCTGATGC chr3L:15502015-15502135 108 9.54e-05 ACCATCAAGT GAGTGTGC CATCA chr2L:8366211-8366331 55 9.54e-05 ACCCGATTTT CAGTGCGC TTGTGTTTGT chr2L:1214567-1214687 21 1.18e-04 GTCTTCCTGG CACAGTGG GCTGGATGTC chr3L:11869415-11869535 4 1.18e-04 ATG CACAGTGG ACCAAATGGG chrX:16580065-16580185 67 1.57e-04 AATCCGAATT CACTGCGG AAGATGCCCT chr2L:15179140-15179260 2 1.57e-04 G CACTGCGG GAAAAATGTT chr3R:26671773-26671893 40 1.57e-04 ACGAGCCTCG CACTGTGG GCCAAAAGCC chr3R:29978779-29978899 89 1.57e-04 TGCACTTTTT CTCAGTGC ATATCTAGAC chr2L:1230853-1230973 100 1.57e-04 GCTAGTTTCT CTCAGTGC ACTCGGCCAG chr2R:22033384-22033504 113 1.57e-04 AAGATTTTTT CTCAGTGC chr3R:13091766-13091886 30 1.57e-04 CCTTCCTGCT GGGTGCGC GGTGCACTCA chr2R:18686998-18687118 30 1.65e-04 CTTAGTTTCT CGCAGTGG TGCACAAACT chrX:16086227-16086347 72 1.97e-04 CTTCTGCTTA GACGGTGC CTCAACAAGG chr3R:8980832-8980952 78 1.97e-04 TTTGTTAGGC GCGAGTGC GTCATTATTA chr2R:12925851-12925971 14 1.97e-04 CAGCCGGAAG GTCTGCGC TCCGGGGTCT chr3R:4359782-4359902 28 2.05e-04 CGAAGCGTTC GGCTGTGG TGGATTGCCA chr2L:4084375-4084495 112 2.05e-04 AGGATGTTGC GGCTGTGG C chr2L:3730269-3730389 93 2.40e-04 AAACGAAAGA GAGAgtgg tgcggttttt chrX:2161085-2161205 80 2.78e-04 GTCTCAAACT GTGAGTGC ATACTTTGAC chr3L:19009576-19009696 14 2.78e-04 TTAATTGCCC CTGAGTGC TTTTCGTGTT chr2R:24945421-24945541 28 2.78e-04 GCTCGCGTGT GAGTGTGG GGTGAATAAC chr3R:24485387-24485507 77 2.85e-04 CAGGACAGCA CGGAGCGG GGCCCAAAGG chrX:18058304-18058424 113 2.85e-04 TGAGAGGAAT GGGAGTGG chr2R:24292827-24292947 35 3.12e-04 AACTCTTTGC GAGGGTGC AAAAAAATGG chrX:4691376-4691496 108 3.12e-04 TTTTCTCTCG gtgtgtgc gtgtg chr2L:4936472-4936592 60 3.12e-04 CCATTCAGCC GCCGGCGC TGCTTTCAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASWGYGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:28297620-28297740 1.6e-05 64_[+2]_48 chr3R:12657065-12657185 1.6e-05 30_[+2]_82 chr3L:21192145-21192265 1.6e-05 87_[+2]_25 chr3R:31630556-31630676 1.6e-05 110_[+2]_2 chr2L:1207628-1207748 3.2e-05 110_[+2]_2 chr2R:23656769-23656889 3.2e-05 68_[+2]_44 chr2R:16916232-16916352 3.2e-05 8_[+2]_104 chr3R:7076424-7076544 3.2e-05 75_[+2]_37 chr2R:21417146-21417266 3.2e-05 39_[+2]_73 chrX:3176358-3176478 4e-05 53_[+2]_59 chr2L:14616103-14616223 4e-05 24_[+2]_88 chr3R:30114508-30114628 4.8e-05 62_[+2]_50 chr3R:4746518-4746638 7.2e-05 8_[+2]_104 chr2R:24638480-24638600 7.2e-05 67_[+2]_45 chr2R:23819340-23819460 7.2e-05 106_[+2]_6 chr3R:29626044-29626164 7.2e-05 95_[+2]_17 chrX:7120344-7120464 7.2e-05 97_[+2]_15 chr2L:3939010-3939130 9.5e-05 84_[+2]_28 chr3R:13802370-13802490 9.5e-05 53_[+2]_59 chr3L:15502015-15502135 9.5e-05 107_[+2]_5 chr2L:8366211-8366331 9.5e-05 54_[+2]_58 chr2L:1214567-1214687 0.00012 20_[+2]_92 chr3L:11869415-11869535 0.00012 3_[+2]_109 chrX:16580065-16580185 0.00016 66_[+2]_46 chr2L:15179140-15179260 0.00016 1_[+2]_111 chr3R:26671773-26671893 0.00016 39_[+2]_73 chr3R:29978779-29978899 0.00016 88_[+2]_24 chr2L:1230853-1230973 0.00016 99_[+2]_13 chr2R:22033384-22033504 0.00016 112_[+2] chr3R:13091766-13091886 0.00016 29_[+2]_83 chr2R:18686998-18687118 0.00016 29_[+2]_83 chrX:16086227-16086347 0.0002 71_[+2]_41 chr3R:8980832-8980952 0.0002 77_[+2]_35 chr2R:12925851-12925971 0.0002 13_[+2]_99 chr3R:4359782-4359902 0.0002 27_[+2]_85 chr2L:4084375-4084495 0.0002 111_[+2]_1 chr2L:3730269-3730389 0.00024 92_[+2]_20 chrX:2161085-2161205 0.00028 79_[+2]_33 chr3L:19009576-19009696 0.00028 13_[+2]_99 chr2R:24945421-24945541 0.00028 27_[+2]_85 chr3R:24485387-24485507 0.00028 76_[+2]_36 chrX:18058304-18058424 0.00028 112_[+2] chr2R:24292827-24292947 0.00031 34_[+2]_78 chrX:4691376-4691496 0.00031 107_[+2]_5 chr2L:4936472-4936592 0.00031 59_[+2]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASWGYGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SASWGYGC width=8 seqs=45 chr3R:28297620-28297740 ( 65) CACAGTGC 1 chr3R:12657065-12657185 ( 31) CACAGTGC 1 chr3L:21192145-21192265 ( 88) GACAGTGC 1 chr3R:31630556-31630676 ( 111) GACAGCGC 1 chr2L:1207628-1207748 ( 111) CACTGTGC 1 chr2R:23656769-23656889 ( 69) CACTGTGC 1 chr2R:16916232-16916352 ( 9) CACTGTGC 1 chr3R:7076424-7076544 ( 76) CACTGTGC 1 chr2R:21417146-21417266 ( 40) CACTGCGC 1 chrX:3176358-3176478 ( 54) GGCAGCGC 1 chr2L:14616103-14616223 ( 25) GGCAGCGC 1 chr3R:30114508-30114628 ( 63) CGCTGCGC 1 chr3R:4746518-4746638 ( 9) GAGAGTGC 1 chr2R:24638480-24638600 ( 68) GCCAGCGC 1 chr2R:23819340-23819460 ( 107) CAGAGCGC 1 chr3R:29626044-29626164 ( 96) CCCAGTGC 1 chrX:7120344-7120464 ( 98) GCCAGTGC 1 chr2L:3939010-3939130 ( 85) CAGTGCGC 1 chr3R:13802370-13802490 ( 54) GCCTGCGC 1 chr3L:15502015-15502135 ( 108) GAGTGTGC 1 chr2L:8366211-8366331 ( 55) CAGTGCGC 1 chr2L:1214567-1214687 ( 21) CACAGTGG 1 chr3L:11869415-11869535 ( 4) CACAGTGG 1 chrX:16580065-16580185 ( 67) CACTGCGG 1 chr2L:15179140-15179260 ( 2) CACTGCGG 1 chr3R:26671773-26671893 ( 40) CACTGTGG 1 chr3R:29978779-29978899 ( 89) CTCAGTGC 1 chr2L:1230853-1230973 ( 100) CTCAGTGC 1 chr2R:22033384-22033504 ( 113) CTCAGTGC 1 chr3R:13091766-13091886 ( 30) GGGTGCGC 1 chr2R:18686998-18687118 ( 30) CGCAGTGG 1 chrX:16086227-16086347 ( 72) GACGGTGC 1 chr3R:8980832-8980952 ( 78) GCGAGTGC 1 chr2R:12925851-12925971 ( 14) GTCTGCGC 1 chr3R:4359782-4359902 ( 28) GGCTGTGG 1 chr2L:4084375-4084495 ( 112) GGCTGTGG 1 chr2L:3730269-3730389 ( 93) GAGAGTGG 1 chrX:2161085-2161205 ( 80) GTGAGTGC 1 chr3L:19009576-19009696 ( 14) CTGAGTGC 1 chr2R:24945421-24945541 ( 28) GAGTGTGG 1 chr3R:24485387-24485507 ( 77) CGGAGCGG 1 chrX:18058304-18058424 ( 113) GGGAGTGG 1 chr2R:24292827-24292947 ( 35) GAGGGTGC 1 chrX:4691376-4691496 ( 108) GTGTGTGC 1 chr2L:4936472-4936592 ( 60) GCCGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASWGYGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3386 E= 1.9e+003 -1214 155 155 -1214 64 -39 26 -108 -1214 193 99 -1214 64 -1214 -133 36 -1214 -1214 258 -1214 -1214 102 -1214 97 -1214 -1214 258 -1214 -1214 207 67 -1214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASWGYGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 1.9e+003 0.000000 0.511111 0.488889 0.000000 0.511111 0.133333 0.200000 0.155556 0.000000 0.666667 0.333333 0.000000 0.511111 0.000000 0.066667 0.422222 0.000000 0.000000 1.000000 0.000000 0.000000 0.355556 0.000000 0.644444 0.000000 0.000000 1.000000 0.000000 0.000000 0.733333 0.266667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASWGYGC MEME-2 regular expression -------------------------------------------------------------------------------- [CG][AG][CG][AT]G[TC]G[CG] -------------------------------------------------------------------------------- Time 14.24 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCTSGC MEME-3 width = 8 sites = 3 llr = 39 E-value = 2.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCTSGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::a:7:a probability G aaa::3a: matrix T ::::a::: bits 2.6 **** ** 2.3 **** ** 2.1 **** ** 1.8 **** ** Relative 1.5 ******** Entropy 1.3 ******** (18.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGCTCGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTSGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5657716-5657836 109 1.38e-06 CATTTTGTTC GGGCTCGC TCTC chr3R:24093537-24093657 106 1.38e-06 AAAAATCTAG GGGCTCGC CAAAACA chrX:7300413-7300533 48 2.69e-06 CATGGCGCCA GGGCTGGC ATATTAAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTSGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5657716-5657836 1.4e-06 108_[+3]_4 chr3R:24093537-24093657 1.4e-06 105_[+3]_7 chrX:7300413-7300533 2.7e-06 47_[+3]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTSGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCTSGC width=8 seqs=3 chr3L:5657716-5657836 ( 109) GGGCTCGC 1 chr3R:24093537-24093657 ( 106) GGGCTCGC 1 chrX:7300413-7300533 ( 48) GGGCTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTSGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 2.1e+004 -823 -823 258 -823 -823 -823 258 -823 -823 -823 258 -823 -823 251 -823 -823 -823 -823 -823 160 -823 193 99 -823 -823 -823 258 -823 -823 251 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTSGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.1e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTSGC MEME-3 regular expression -------------------------------------------------------------------------------- GGGCT[CG]GC -------------------------------------------------------------------------------- Time 20.64 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCCAGGC MEME-4 width = 8 sites = 2 llr = 27 E-value = 1.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCCAGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C ::aa:::a probability G aa:::aa: matrix T :::::::: bits 2.6 **** *** 2.3 **** *** 2.1 **** *** 1.8 **** *** Relative 1.5 ******** Entropy 1.3 ******** (19.5 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCCAGGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:24485387-24485507 13 1.37e-06 CAGAGGTCCT GGCCAGGC TACAAAAACA chr2L:1230853-1230973 112 1.37e-06 CAGTGCACTC GGCCAGGC C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:24485387-24485507 1.4e-06 12_[+4]_100 chr2L:1230853-1230973 1.4e-06 111_[+4]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCCAGGC width=8 seqs=2 chr3R:24485387-24485507 ( 13) GGCCAGGC 1 chr2L:1230853-1230973 ( 112) GGCCAGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.7e+004 -765 -765 257 -765 -765 -765 257 -765 -765 251 -765 -765 -765 251 -765 -765 160 -765 -765 -765 -765 -765 257 -765 -765 -765 257 -765 -765 251 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.7e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGGC MEME-4 regular expression -------------------------------------------------------------------------------- GGCCAGGC -------------------------------------------------------------------------------- Time 27.01 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAGGGCA MEME-5 width = 8 sites = 2 llr = 26 E-value = 3.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAGGGCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a::::a pos.-specific C ::::::a: probability G aa:aaa:: matrix T :::::::: bits 2.6 ** **** 2.3 ** **** 2.1 ** **** 1.8 ** **** Relative 1.5 ******** Entropy 1.3 ******** (18.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGAGGGCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24292827-24292947 3 2.45e-06 CA GGAGGGCA TGCTCGAAGC chr3L:3492472-3492592 49 2.45e-06 ATTATAATGT GGAGGGCA ATGAATAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24292827-24292947 2.4e-06 2_[+5]_110 chr3L:3492472-3492592 2.4e-06 48_[+5]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAGGGCA width=8 seqs=2 chr2R:24292827-24292947 ( 3) GGAGGGCA 1 chr3L:3492472-3492592 ( 49) GGAGGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 3.3e+004 -765 -765 257 -765 -765 -765 257 -765 160 -765 -765 -765 -765 -765 257 -765 -765 -765 257 -765 -765 -765 257 -765 -765 251 -765 -765 160 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.3e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGCA MEME-5 regular expression -------------------------------------------------------------------------------- GGAGGGCA -------------------------------------------------------------------------------- Time 33.41 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:24073919-24074039 3.05e-01 120 chr3R:9488120-9488240 8.26e-01 120 chrX:20448324-20448444 2.10e-01 120 chr2L:17876141-17876261 1.00e+00 120 chr2L:7931324-7931444 9.81e-01 120 chr2R:21417146-21417266 2.73e-04 25_[+3(9.23e-05)]_6_[+2(3.18e-05)]_\ 73 chr3L:17941743-17941863 5.85e-03 48_[+5(8.50e-05)]_64 chr3L:19961899-19962019 9.80e-01 120 chr3R:31363775-31363895 1.00e+00 120 chr2R:24945421-24945541 6.43e-03 120 chr3R:18910996-18911116 1.77e-01 120 chr3L:3492472-3492592 2.52e-02 48_[+5(2.45e-06)]_64 chr3L:5665488-5665608 8.09e-01 120 chr3R:5525210-5525330 4.88e-02 120 chr2R:6589495-6589615 1.55e-01 120 chr2R:21780666-21780786 9.88e-01 120 chrX:7120344-7120464 2.06e-01 97_[+2(7.17e-05)]_15 chrX:18058304-18058424 1.28e-01 120 chr3L:11869415-11869535 1.56e-01 120 chr3R:20956249-20956369 9.31e-01 120 chr2L:8607383-8607503 1.00e+00 120 chr2L:2501924-2502044 2.09e-01 120 chrX:9431554-9431674 1.96e-01 120 chr2L:18267937-18268057 9.95e-01 120 chr2L:4084375-4084495 6.81e-02 120 chr3R:15119885-15120005 8.56e-01 120 chr2R:9387042-9387162 1.97e-01 120 chr2L:9400358-9400478 1.00e+00 120 chr3R:24467381-24467501 9.84e-01 120 chr3L:952306-952426 8.96e-02 120 chr2R:18686998-18687118 4.19e-02 120 chr3R:11771889-11772009 7.26e-01 120 chr3R:7076424-7076544 7.06e-02 75_[+2(3.18e-05)]_37 chr3R:24474901-24475021 8.51e-01 120 chr2R:16916232-16916352 2.46e-01 8_[+2(3.18e-05)]_104 chr2R:16911870-16911990 5.99e-01 120 chr3R:28429709-28429829 3.51e-01 120 chr3R:13091766-13091886 5.05e-03 120 chr3L:19009576-19009696 2.53e-03 103_[+1(3.44e-06)]_9 chr3L:7349460-7349580 8.81e-01 120 chr2R:13098808-13098928 4.22e-02 120 chr2R:22033384-22033504 4.71e-02 120 chr2L:2348628-2348748 9.92e-01 120 chr3R:6463196-6463316 9.88e-01 120 chrX:14446922-14447042 9.61e-01 120 chr3R:17818884-17819004 4.20e-01 120 chr3L:4000828-4000948 9.96e-01 120 chr3R:29651599-29651719 8.82e-01 120 chr3L:4010152-4010272 5.20e-01 120 chr2L:3737793-3737913 3.74e-01 120 chr2L:1230853-1230973 1.55e-04 111_[+4(1.37e-06)]_1 chr2R:15156319-15156439 9.56e-01 120 chr3R:31630556-31630676 5.45e-03 47_[+2(7.17e-05)]_55_[+2(1.59e-05)]_\ 2 chr2R:9756297-9756417 9.23e-01 120 chr2R:16770325-16770445 9.92e-01 120 chr3R:26123155-26123275 5.08e-01 120 chrX:18125616-18125736 9.98e-01 120 chr3R:24485387-24485507 3.76e-05 12_[+4(1.37e-06)]_100 chr3R:28035418-28035538 1.00e+00 120 chr3R:18508394-18508514 2.11e-01 18_[+1(2.37e-05)]_94 chr3L:20221437-20221557 9.73e-01 120 chrX:13023879-13023999 9.82e-01 120 chr3R:24091685-24091805 6.69e-01 120 chr3L:20907108-20907228 5.23e-01 120 chr3L:11556790-11556910 3.73e-02 101_[+3(6.61e-05)]_11 chrX:16585616-16585736 9.73e-01 120 chr3R:21809126-21809246 8.25e-01 120 chrX:9520341-9520461 9.51e-01 120 chr2R:24709665-24709785 5.37e-01 120 chr2L:19800839-19800959 9.98e-01 120 chr3L:10827370-10827490 2.67e-01 120 chr2R:11641818-11641938 9.79e-01 120 chrX:2912704-2912824 9.73e-01 120 chrX:19818793-19818913 6.39e-01 120 chr3L:10827569-10827689 9.94e-01 120 chr3R:24093537-24093657 4.85e-03 105_[+3(1.38e-06)]_7 chrX:16633283-16633403 1.58e-05 87_[+1(1.09e-05)]_25 chr2R:23910100-23910220 1.14e-03 70_[+1(2.07e-06)]_42 chr2L:9864512-9864632 6.62e-01 120 chr3R:29626044-29626164 5.89e-04 95_[+2(7.17e-05)]_[+1(1.09e-05)]_9 chr3L:9466812-9466932 6.53e-01 120 chrX:12073713-12073833 9.89e-01 120 chr3L:917331-917451 1.00e+00 120 chr3R:30550214-30550334 8.91e-01 120 chrX:12916883-12917003 8.16e-01 120 chr3R:13600647-13600767 6.16e-01 120 chr2L:128505-128625 3.52e-03 13_[+1(2.37e-05)]_99 chr3R:29978779-29978899 5.12e-01 120 chr2L:3755287-3755407 1.00e+00 120 chrX:2834692-2834812 9.73e-01 120 chr2L:19138449-19138569 2.96e-01 120 chr3R:22822833-22822953 8.87e-01 120 chr2R:20434026-20434146 5.15e-01 120 chrX:19453309-19453429 7.59e-01 120 chrX:14598918-14599038 3.66e-01 120 chr3L:5297431-5297551 7.52e-02 120 chr3R:29866803-29866923 6.78e-01 120 chr3R:26671773-26671893 1.64e-02 120 chr3L:17448089-17448209 1.53e-02 103_[+4(5.08e-05)]_9 chr2R:24694420-24694540 7.11e-05 41_[+1(3.44e-06)]_71 chr2L:14616103-14616223 8.47e-04 24_[+2(3.99e-05)]_88 chr3L:7222258-7222378 8.53e-02 120 chrX:16581860-16581980 2.03e-01 120 chr2R:19354810-19354930 7.72e-01 120 chr3L:21192145-21192265 1.31e-03 87_[+2(1.59e-05)]_25 chr2L:2733143-2733263 2.22e-02 41_[+4(5.08e-05)]_71 chr2R:22789418-22789538 9.99e-01 120 chr2R:12546675-12546795 7.22e-01 120 chrX:10756102-10756222 9.24e-01 120 chr2L:11086532-11086652 4.36e-05 62_[+1(3.33e-05)]_50 chr3L:19231254-19231374 9.50e-01 120 chr3R:27426919-27427039 6.29e-01 120 chr3L:17625121-17625241 3.94e-01 120 chr3L:5657716-5657836 9.20e-04 108_[+3(1.38e-06)]_4 chr2R:23154660-23154780 6.97e-01 120 chrX:18467985-18468105 2.83e-02 120 chr3R:25152544-25152664 5.19e-02 120 chr2L:11628441-11628561 1.00e+00 120 chrX:5847621-5847741 5.78e-01 120 chr3R:31636655-31636775 9.80e-01 120 chr3R:4359782-4359902 2.98e-02 120 chr2R:10347594-10347714 2.48e-02 120 chr2L:4936472-4936592 8.45e-03 62_[+1(7.25e-05)]_50 chr2R:23819977-23820097 6.51e-01 120 chr2L:1043730-1043850 8.16e-01 120 chr2R:10192394-10192514 2.74e-03 42_[+1(4.81e-06)]_70 chrX:12870022-12870142 1.00e+00 120 chrX:9004532-9004652 9.45e-01 120 chr3L:11409826-11409946 9.08e-01 120 chr2R:13245316-13245436 2.26e-02 8_[+4(9.04e-05)]_104 chr2L:14141374-14141494 8.87e-01 120 chr3R:11024847-11024967 5.35e-01 120 chr2R:17435628-17435748 3.57e-01 120 chr3L:12874308-12874428 8.85e-01 120 chr2R:23819340-23819460 2.82e-02 106_[+2(7.17e-05)]_6 chr3R:9851712-9851832 3.62e-02 120 chr3R:25968655-25968775 8.83e-01 120 chr2L:20808360-20808480 1.00e+00 120 chr2R:24638480-24638600 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chr3R:21180484-21180604 9.55e-01 120 chrX:16671163-16671283 9.72e-01 120 chr2L:1214567-1214687 1.81e-03 26_[+3(6.61e-05)]_86 chrX:5095703-5095823 2.51e-01 120 chr3L:11278706-11278826 2.86e-02 120 chr2R:24139183-24139303 1.38e-01 120 chr3L:19908649-19908769 4.69e-01 120 chr2L:2944593-2944713 9.95e-01 120 chrX:8924958-8925078 1.49e-01 120 chr3L:311679-311799 1.93e-03 120 chr2L:1207628-1207748 8.39e-02 110_[+2(3.18e-05)]_2 chr3L:19087980-19088100 1.00e+00 120 chr2L:18845193-18845313 4.19e-01 120 chr3R:10024171-10024291 9.09e-01 120 chr2L:2171674-2171794 7.15e-01 120 chrX:16580065-16580185 4.33e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n07.farnam.hpc.yale.internal ********************************************************************************