******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/HLHmδ.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:26006945-26007065 1.0000 120 chr3L:18268209-18268329 1.0000 120 chr2R:22120422-22120542 1.0000 120 chrX:16457381-16457501 1.0000 120 chr3L:592389-592509 1.0000 120 chrX:5995198-5995318 1.0000 120 chr2R:10313047-10313167 1.0000 120 chr3R:9603713-9603833 1.0000 120 chrX:20722059-20722179 1.0000 120 chr2L:5881061-5881181 1.0000 120 chr3L:11454566-11454686 1.0000 120 chr3R:21828632-21828752 1.0000 120 chr2L:14433070-14433190 1.0000 120 chr3L:22456936-22457056 1.0000 120 chr3R:26018684-26018804 1.0000 120 chr3L:8846644-8846764 1.0000 120 chr2L:19037589-19037709 1.0000 120 chr2R:13569157-13569277 1.0000 120 chrX:20721549-20721669 1.0000 120 chr2L:3018286-3018406 1.0000 120 chr3L:20447373-20447493 1.0000 120 chr3L:15330885-15331005 1.0000 120 chr2R:10808866-10808986 1.0000 120 chr3L:17657126-17657246 1.0000 120 chr2L:14262971-14263091 1.0000 120 chr2L:8690024-8690144 1.0000 120 chr3L:12063803-12063923 1.0000 120 chr3L:4999594-4999714 1.0000 120 chr3L:13214753-13214873 1.0000 120 chr3R:7650832-7650952 1.0000 120 chr2R:22824933-22825053 1.0000 120 chr3R:10284262-10284382 1.0000 120 chr3L:18269100-18269220 1.0000 120 chr2R:23886733-23886853 1.0000 120 chr3R:8850019-8850139 1.0000 120 chr3L:18235552-18235672 1.0000 120 chr2R:17076108-17076228 1.0000 120 chr2L:4119502-4119622 1.0000 120 chr2R:14420772-14420892 1.0000 120 chr2R:23908735-23908855 1.0000 120 chr2L:20972580-20972700 1.0000 120 chr3R:17945904-17946024 1.0000 120 chr3R:19298324-19298444 1.0000 120 chr2L:14683796-14683916 1.0000 120 chr3R:26009865-26009985 1.0000 120 chr3L:11345675-11345795 1.0000 120 chr3R:7646042-7646162 1.0000 120 chr2L:19037160-19037280 1.0000 120 chr3R:23758622-23758742 1.0000 120 chr3L:377269-377389 1.0000 120 chr2R:8802127-8802247 1.0000 120 chr3R:14743599-14743719 1.0000 120 chr3R:22125079-22125199 1.0000 120 chr3L:320934-321054 1.0000 120 chr2R:6158055-6158175 1.0000 120 chr3L:297741-297861 1.0000 120 chrX:3358488-3358608 1.0000 120 chr3L:4431343-4431463 1.0000 120 chr3R:25996886-25997006 1.0000 120 chr3L:1360247-1360367 1.0000 120 chr3L:16896565-16896685 1.0000 120 chr2L:19937919-19938039 1.0000 120 chr3R:26003207-26003327 1.0000 120 chr3R:26009352-26009472 1.0000 120 chr2R:12662263-12662383 1.0000 120 chr3L:7961787-7961907 1.0000 120 chr2L:19263646-19263766 1.0000 120 chr3L:18832895-18833015 1.0000 120 chr3R:30474835-30474955 1.0000 120 chr2R:8244616-8244736 1.0000 120 chr2R:14223084-14223204 1.0000 120 chr3R:27597402-27597522 1.0000 120 chr3R:11235691-11235811 1.0000 120 chrX:8419712-8419832 1.0000 120 chr2L:6701725-6701845 1.0000 120 chrX:2796490-2796610 1.0000 120 chr3R:29268121-29268241 1.0000 120 chr3L:15669847-15669967 1.0000 120 chr3R:23788813-23788933 1.0000 120 chr3L:2853091-2853211 1.0000 120 chr3R:14595539-14595659 1.0000 120 chr2L:14642375-14642495 1.0000 120 chr3R:26000881-26001001 1.0000 120 chr3L:11423730-11423850 1.0000 120 chr2R:9857923-9858043 1.0000 120 chr2L:6204246-6204366 1.0000 120 chr2R:19372770-19372890 1.0000 120 chr2R:23982195-23982315 1.0000 120 chr3R:4866005-4866125 1.0000 120 chr3L:21591389-21591509 1.0000 120 chr3R:19934957-19935077 1.0000 120 chr2R:18337674-18337794 1.0000 120 chr3R:31722965-31723085 1.0000 120 chr2R:15944898-15945018 1.0000 120 chr3R:29266839-29266959 1.0000 120 chr2R:19373161-19373281 1.0000 120 chr3L:8560139-8560259 1.0000 120 chr3R:26012262-26012382 1.0000 120 chr2L:6550636-6550756 1.0000 120 chr3R:21372634-21372754 1.0000 120 chrX:10930779-10930899 1.0000 120 chr3R:6215437-6215557 1.0000 120 chr3R:29716126-29716246 1.0000 120 chr3R:5229592-5229712 1.0000 120 chr3R:21600799-21600919 1.0000 120 chr2R:10313765-10313885 1.0000 120 chr2L:7157653-7157773 1.0000 120 chr2R:16820376-16820496 1.0000 120 chr2L:16281488-16281608 1.0000 120 chr2R:24323386-24323506 1.0000 120 chr2L:7491476-7491596 1.0000 120 chr3L:11588688-11588808 1.0000 120 chr2L:18561845-18561965 1.0000 120 chr3R:16631059-16631179 1.0000 120 chr3R:25636745-25636865 1.0000 120 chr2R:6964622-6964742 1.0000 120 chr3L:18768937-18769057 1.0000 120 chr3R:26440990-26441110 1.0000 120 chr3L:14782448-14782568 1.0000 120 chrX:14627173-14627293 1.0000 120 chr3L:18101853-18101973 1.0000 120 chr3L:18224783-18224903 1.0000 120 chr2L:18361315-18361435 1.0000 120 chr3R:9024156-9024276 1.0000 120 chr3L:12729375-12729495 1.0000 120 chr2L:8576632-8576752 1.0000 120 chr3R:21876395-21876515 1.0000 120 chr2R:12730001-12730121 1.0000 120 chr3L:901040-901160 1.0000 120 chr2L:7121117-7121237 1.0000 120 chr3L:321620-321740 1.0000 120 chr2L:3152780-3152900 1.0000 120 chr3R:16933464-16933584 1.0000 120 chr3R:4993540-4993660 1.0000 120 chrX:457201-457321 1.0000 120 chr2R:8683518-8683638 1.0000 120 chr2R:13623480-13623600 1.0000 120 chr2R:18412759-18412879 1.0000 120 chr2R:18436255-18436375 1.0000 120 chrX:4563084-4563204 1.0000 120 chr3R:16227074-16227194 1.0000 120 chr3L:13135012-13135132 1.0000 120 chr2L:7089851-7089971 1.0000 120 chr2R:23787693-23787813 1.0000 120 chr2L:7998263-7998383 1.0000 120 chr3R:17814632-17814752 1.0000 120 chr2R:8860297-8860417 1.0000 120 chr3R:25983407-25983527 1.0000 120 chr2L:20476935-20477055 1.0000 120 chr3L:8830555-8830675 1.0000 120 chr2R:8062528-8062648 1.0000 120 chr2R:14917412-14917532 1.0000 120 chr2L:21035597-21035717 1.0000 120 chr2L:20488514-20488634 1.0000 120 chr3L:34781-34901 1.0000 120 chr2L:18899693-18899813 1.0000 120 chr2R:8771052-8771172 1.0000 120 chr2L:10544835-10544955 1.0000 120 chrX:2383232-2383352 1.0000 120 chr2R:14713566-14713686 1.0000 120 chr2L:8849984-8850104 1.0000 120 chrX:2659587-2659707 1.0000 120 chr2R:8653915-8654035 1.0000 120 chr3R:16216761-16216881 1.0000 120 chr3L:11384029-11384149 1.0000 120 chr2L:4594945-4595065 1.0000 120 chr2L:10553795-10553915 1.0000 120 chrX:17509710-17509830 1.0000 120 chrX:4677568-4677688 1.0000 120 chr2L:18945934-18946054 1.0000 120 chr2L:20859112-20859232 1.0000 120 chr3L:22134725-22134845 1.0000 120 chrX:6908257-6908377 1.0000 120 chrX:825117-825237 1.0000 120 chr2R:18670330-18670450 1.0000 120 chr3L:12482403-12482523 1.0000 120 chr3R:26013662-26013782 1.0000 120 chr3R:21557090-21557210 1.0000 120 chr2R:8091645-8091765 1.0000 120 chr2L:10499744-10499864 1.0000 120 chr3R:21632652-21632772 1.0000 120 chrX:6999323-6999443 1.0000 120 chr3R:26013234-26013354 1.0000 120 chr2L:20881855-20881975 1.0000 120 chr3L:7988580-7988700 1.0000 120 chr3R:8251706-8251826 1.0000 120 chr3L:20404679-20404799 1.0000 120 chr2L:7577748-7577868 1.0000 120 chr2R:8985547-8985667 1.0000 120 chr2R:22230078-22230198 1.0000 120 chr2R:15011314-15011434 1.0000 120 chr2R:11660583-11660703 1.0000 120 chr3L:13919869-13919989 1.0000 120 chr2R:8245239-8245359 1.0000 120 chr2R:21888985-21889105 1.0000 120 chrX:3741774-3741894 1.0000 120 chr2L:10543222-10543342 1.0000 120 chr3L:20789406-20789526 1.0000 120 chr3R:11350999-11351119 1.0000 120 chrX:13089543-13089663 1.0000 120 chr2R:18293278-18293398 1.0000 120 chrX:3832354-3832474 1.0000 120 chr2L:14308351-14308471 1.0000 120 chr3L:20367172-20367292 1.0000 120 chr3L:813822-813942 1.0000 120 chr3R:10520310-10520430 1.0000 120 chr3L:5952707-5952827 1.0000 120 chr2R:13623002-13623122 1.0000 120 chrX:13358397-13358517 1.0000 120 chr2R:13375457-13375577 1.0000 120 chr2L:121523-121643 1.0000 120 chr3L:10766907-10767027 1.0000 120 chr3L:1431495-1431615 1.0000 120 chr3R:8277903-8278023 1.0000 120 chr3L:13227638-13227758 1.0000 120 chr2L:15327293-15327413 1.0000 120 chr3L:21706270-21706390 1.0000 120 chrX:5085684-5085804 1.0000 120 chr3L:641488-641608 1.0000 120 chr3L:16767035-16767155 1.0000 120 chrX:2387610-2387730 1.0000 120 chrX:17481967-17482087 1.0000 120 chr2L:11045620-11045740 1.0000 120 chr2R:18667157-18667277 1.0000 120 chr3L:15329729-15329849 1.0000 120 chr2L:8411541-8411661 1.0000 120 chrX:9644970-9645090 1.0000 120 chrX:19637936-19638056 1.0000 120 chr3R:9027178-9027298 1.0000 120 chr2R:9404595-9404715 1.0000 120 chr3L:4263670-4263790 1.0000 120 chr2R:9439846-9439966 1.0000 120 chrX:18634802-18634922 1.0000 120 chr3L:17962790-17962910 1.0000 120 chr3R:22780472-22780592 1.0000 120 chr2R:21161489-21161609 1.0000 120 chrX:7977394-7977514 1.0000 120 chr3R:27437444-27437564 1.0000 120 chr2R:11091095-11091215 1.0000 120 chr2R:20600798-20600918 1.0000 120 chr2R:12663127-12663247 1.0000 120 chr2L:9193891-9194011 1.0000 120 chr3R:19935644-19935764 1.0000 120 chr3L:20976552-20976672 1.0000 120 chr3R:5104293-5104413 1.0000 120 chr2L:6178559-6178679 1.0000 120 chr2L:6252935-6253055 1.0000 120 chr2L:6553786-6553906 1.0000 120 chrX:2191980-2192100 1.0000 120 chr3L:17974787-17974907 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_HLHmδ/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/HLHmδ.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.235 C 0.256 G 0.264 T 0.246 Background letter frequencies (from file dataset with add-one prior applied): A 0.235 C 0.256 G 0.264 T 0.246 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CACACACA MEME-1 width = 8 sites = 23 llr = 230 E-value = 1.1e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :9:9:a:a pos.-specific C a:a:a:9: probability G :::1:::: matrix T :1::::1: bits 2.1 * * 1.9 * ** * 1.7 *** ** * 1.5 ******** Relative 1.3 ******** Entropy 1.0 ******** (14.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19637936-19638056 56 1.31e-05 cagaacggca cacacaca cacacgctca chr3L:13919869-13919989 24 1.31e-05 GCGCGAGACA CACACACA AAGCTCTCGG chrX:2383232-2383352 103 1.31e-05 TTCGCGCACA CACACACA CAGTTACATA chr2R:8771052-8771172 29 1.31e-05 ATTAAGCAGA CACACACA AGTTTGTGCT chr2R:8062528-8062648 84 1.31e-05 CACTTATGCA CACACACA CACCAACCGA chr2R:18436255-18436375 29 1.31e-05 AACAGAAATA CACACACA TTATATGAAA chr2R:10313765-10313885 17 1.31e-05 GCCACTCACC CACACACA CGTGCACAAA chr2R:15944898-15945018 18 1.31e-05 CTTATGGATA CACACACA CGTACTTATA chr3R:31722965-31723085 76 1.31e-05 TCCGCTCTCG CACACACA CATGCATCTA chr3L:4431343-4431463 34 1.31e-05 AACCCGGTCA CACACACA AGCGGCCGAG chr3R:19298324-19298444 25 1.31e-05 GATCACTGAT CACACACA AACGGAACGG chr2R:22824933-22825053 19 1.31e-05 CACACACGAA CACACACA TGCACACCGA chr3L:8846644-8846764 28 1.31e-05 AACACATGCG CACACACA GGGAAACTGA chr3L:22456936-22457056 36 1.31e-05 cacgcttaca cacacaca tgcacacCCT chr3R:16227074-16227194 85 4.04e-05 TTGTAGTAGG CACGCACA GCACGCGTCG chr3R:16933464-16933584 47 4.04e-05 CTTACTCACA CACGCACA CTGCCTAAAG chr3L:321620-321740 109 4.04e-05 CATCTCTCGG CACGCACA TACT chr2R:19372770-19372890 54 4.04e-05 TACTCGTAAA CACACATA GAACGCGCGA chr3L:11345675-11345795 90 4.04e-05 TGTTTACATG CACACATA TGCATTGTCG chr3R:10284262-10284382 24 4.04e-05 CGGTTCGGTT CACACATA ATGCCGCTCC chr3L:15329729-15329849 101 5.41e-05 gaaacacaca ctcacaca gacacagctg chr3L:4999594-4999714 36 5.41e-05 CACCATGCAG CTCACACA ATATCTCCCC chr2R:8653915-8654035 85 6.61e-05 AAAACAAACA CAAACACA AATATTTGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19637936-19638056 1.3e-05 55_[+1]_57 chr3L:13919869-13919989 1.3e-05 23_[+1]_89 chrX:2383232-2383352 1.3e-05 102_[+1]_10 chr2R:8771052-8771172 1.3e-05 28_[+1]_84 chr2R:8062528-8062648 1.3e-05 83_[+1]_29 chr2R:18436255-18436375 1.3e-05 28_[+1]_84 chr2R:10313765-10313885 1.3e-05 16_[+1]_96 chr2R:15944898-15945018 1.3e-05 17_[+1]_95 chr3R:31722965-31723085 1.3e-05 75_[+1]_37 chr3L:4431343-4431463 1.3e-05 33_[+1]_79 chr3R:19298324-19298444 1.3e-05 24_[+1]_88 chr2R:22824933-22825053 1.3e-05 18_[+1]_94 chr3L:8846644-8846764 1.3e-05 27_[+1]_85 chr3L:22456936-22457056 1.3e-05 35_[+1]_77 chr3R:16227074-16227194 4e-05 84_[+1]_28 chr3R:16933464-16933584 4e-05 46_[+1]_66 chr3L:321620-321740 4e-05 108_[+1]_4 chr2R:19372770-19372890 4e-05 53_[+1]_59 chr3L:11345675-11345795 4e-05 89_[+1]_23 chr3R:10284262-10284382 4e-05 23_[+1]_89 chr3L:15329729-15329849 5.4e-05 100_[+1]_12 chr3L:4999594-4999714 5.4e-05 35_[+1]_77 chr2R:8653915-8654035 6.6e-05 84_[+1]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACA width=8 seqs=23 chrX:19637936-19638056 ( 56) CACACACA 1 chr3L:13919869-13919989 ( 24) CACACACA 1 chrX:2383232-2383352 ( 103) CACACACA 1 chr2R:8771052-8771172 ( 29) CACACACA 1 chr2R:8062528-8062648 ( 84) CACACACA 1 chr2R:18436255-18436375 ( 29) CACACACA 1 chr2R:10313765-10313885 ( 17) CACACACA 1 chr2R:15944898-15945018 ( 18) CACACACA 1 chr3R:31722965-31723085 ( 76) CACACACA 1 chr3L:4431343-4431463 ( 34) CACACACA 1 chr3R:19298324-19298444 ( 25) CACACACA 1 chr2R:22824933-22825053 ( 19) CACACACA 1 chr3L:8846644-8846764 ( 28) CACACACA 1 chr3L:22456936-22457056 ( 36) CACACACA 1 chr3R:16227074-16227194 ( 85) CACGCACA 1 chr3R:16933464-16933584 ( 47) CACGCACA 1 chr3L:321620-321740 ( 109) CACGCACA 1 chr2R:19372770-19372890 ( 54) CACACATA 1 chr3L:11345675-11345795 ( 90) CACACATA 1 chr3R:10284262-10284382 ( 24) CACACATA 1 chr3L:15329729-15329849 ( 101) CTCACACA 1 chr3L:4999594-4999714 ( 36) CTCACACA 1 chr2R:8653915-8654035 ( 85) CAAACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1534 E= 1.1e-006 -1117 197 -1117 -1117 196 -1117 -1117 -150 -243 190 -1117 -1117 189 -1117 -101 -1117 -1117 197 -1117 -1117 209 -1117 -1117 -1117 -1117 177 -1117 -91 209 -1117 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.1e-006 0.000000 1.000000 0.000000 0.000000 0.913043 0.000000 0.000000 0.086957 0.043478 0.956522 0.000000 0.000000 0.869565 0.000000 0.130435 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.869565 0.000000 0.130435 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-1 regular expression -------------------------------------------------------------------------------- CACACACA -------------------------------------------------------------------------------- Time 8.63 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTKTGY MEME-2 width = 8 sites = 83 llr = 611 E-value = 2.0e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTKTGY MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::21 pos.-specific C 1::1:::4 probability G 7:a:4:71 matrix T 3a:96a14 bits 2.1 * * 1.9 ** * 1.7 *** * 1.5 *** * Relative 1.3 *** * Entropy 1.0 ***** (10.6 bits) 0.8 ****** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTTTGT consensus T G AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKTGY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14917412-14917532 71 1.66e-05 TATATCTCAT GTGTTTGT TTTGGTTGTC chr3L:8830555-8830675 80 1.66e-05 CCGCCGGCAA GTGTTTGT GTGCCGCCTG chr2R:8683518-8683638 50 1.66e-05 CCGCCGTGCC GTGTTTGT TTGCCCCCGT chr3R:26003207-26003327 95 1.66e-05 CCCACAGGTT GTGTTTGT ATGGGATCgt chrX:3358488-3358608 94 1.66e-05 TTATCATTGT GTGTTTGT ATATTTGTCC chr3R:9603713-9603833 32 1.66e-05 CACATTGTTT GTGTTTGT GTTTATAATT chr3R:22780472-22780592 104 3.38e-05 CACATGTTCT GTGTTTGC TTTGCTTGC chr2R:21888985-21889105 75 3.38e-05 AGCATTGTGC GTGTTTGC AGTCCATCAC chr3R:8251706-8251826 89 3.38e-05 GAGAGTGAGA GTGTTTGC CCCGCTCATT chr3L:11345675-11345795 6 3.38e-05 CAAGC GTGTTTGC TTATTATCGA chr2L:14433070-14433190 64 3.38e-05 cagtcaatcg gtGTTTGC ATAAGTCTTC chr2R:20600798-20600918 95 5.16e-05 GGATGGATGT GTGTGTGT GTGCGTAAAT chr2L:8411541-8411661 28 5.16e-05 ATTTACTGCC GTGTGTGT CAATGTCAAC chr3L:1431495-1431615 111 5.16e-05 gtgtgtgtgt gtgtgtgt gt chr3L:10766907-10767027 43 5.16e-05 ttgtgagtga gtgtgtgt gtgtgtgtgt chr2L:10499744-10499864 73 5.16e-05 GTCCTtgtgt gtgtgtgt gtgtgtgggt chrX:6908257-6908377 70 5.16e-05 AGCGCTCACC GTGTGTGT CTCGTGTCTC chrX:14627173-14627293 43 5.16e-05 gctggtgggc gtgtgtgt gtgtgtgtgt chr2R:23982195-23982315 25 5.16e-05 TGTTCtgtgt gtgtgtgt gtgctttggg chr2L:19263646-19263766 105 5.16e-05 ctgtgcgtct gtgtgtgt gagtgccc chr3L:1360247-1360367 71 5.16e-05 GGGACAACAT GTGTGTGT GTGCCGAGAG chr3L:11454566-11454686 88 5.16e-05 gtgtgtgcac gtgtgtgt atgtatgtgc chrX:16457381-16457501 84 5.16e-05 ATGTGTGTGA GTGTGTGT GCGAGTGAGT chr2L:8849984-8850104 2 7.01e-05 a gtgtgtgC TGAAGCATTG chr3R:25996886-25997006 22 7.01e-05 TGCTGATgtc gtgtgtgc gtgtggtgcg chr2R:24323386-24323506 78 8.56e-05 tcctgtttgt ttgtttgt tTGCTCAAGA chr3L:12063803-12063923 38 8.56e-05 GTATTTGTAG TTGTTTGT CGTGCGCCAA chr3R:10520310-10520430 57 1.02e-04 GCACACAATC TTGTTTGC ATTTCCCACC chr3R:11350999-11351119 87 1.02e-04 CCTGTTGTTC TTGTTTGC GACTGGCGAG chr2R:18436255-18436375 63 1.02e-04 TAAAAGAGCA TTGTTTGC GCGGGCCAAA chr2R:16820376-16820496 74 1.02e-04 AGACAAATAT TTGTTTGC TTTTTGTTGG chr3R:19298324-19298444 51 1.02e-04 GGTTTTCGGT TTGTTTGC CTTTGACAAA chr2R:22824933-22825053 63 1.02e-04 TTAAATACAT TTGTTTGC CAAGTCAAAC chr2L:19037160-19037280 107 1.16e-04 CTTTTTTTGA GTGTTTAT TTTTAG chr3R:7650832-7650952 31 1.16e-04 CATGAAATTC GTGTTTAT TTTGGTACGC chrX:17481967-17482087 76 1.32e-04 GATAACCCTG GTGTTTAC TCAACGCGGT chr3R:11235691-11235811 107 1.32e-04 GATCCCCTAA GTGTTTAC ACCATG chr2L:20881855-20881975 15 1.81e-04 CCACTTATTT TTGTGTGC CTTGTAGAGG chr3R:21557090-21557210 70 1.81e-04 ATGTGCCGTG TTGTGTGC CTGTGGCAAG chrX:17509710-17509830 33 1.81e-04 CGTATGTTTG TTGTGTGC GCAGTGATAA chr2L:14642375-14642495 94 1.81e-04 catgAAAATA TTGTGTGC TATGGCACTG chr2L:19937919-19938039 32 1.81e-04 GCATTTCCCC GTGTTTGA TGTAAATGTC chr3R:8850019-8850139 35 1.81e-04 GTGCGTTCAT GTGTTTGA GTTATGGTGC chr2L:14262971-14263091 61 1.81e-04 CGATCAGTTC GTGTTTGA CGGTCGTTTG chr3R:30474835-30474955 94 1.97e-04 CTACAACTGA GTGTGTAT CTGTATCTGT chr2R:9439846-9439966 56 2.14e-04 AGACAACGCT GTGTGTAC TTACTTACAC chr2R:18667157-18667277 88 2.14e-04 GCACTTGTCT GTGTGTAC ATATTTTTAA chr3L:20367172-20367292 81 2.14e-04 AGATAGTTGA GTGTGTAC CTGGAATAGT chr2R:22120422-22120542 27 2.14e-04 CGATATTTCT GTGTGTAC TTGCAGTGGG chr3R:26009352-26009472 79 2.30e-04 CTTTTATGCA CTGTTTGT TGTGTATACA chr3R:21828632-21828752 19 2.30e-04 GGAGCTGTAT CTGTTTGT AGCTGGAAAT chrX:2383232-2383352 40 2.77e-04 CATCCACTTC CTGTTTGC AATTTGTTTA chr3L:11588688-11588808 63 2.77e-04 AAGTAAATAT GTGTGTGA GTGTATGCTG chr3R:29268121-29268241 65 2.77e-04 GTTCAACGAA CTGTTTGC TTTGCTGTCC chr3R:7646042-7646162 102 2.77e-04 GCGCGCACGC GTGTGTGA TATGCCACGC chr2L:19037589-19037709 28 2.77e-04 TCACGGCGCG TTGTTTAT GAGGGGGAAG chr3L:20404679-20404799 68 3.09e-04 GTTGTCGGCG GTGTTTGG AGAAAGTGCT chr3L:34781-34901 5 3.09e-04 TTTT GTGTTTGG CTTGTGGCTA chr3R:6215437-6215557 36 3.09e-04 ATTAGGTCTG TTGTTTAC TTTCGACTGC chr2R:23908735-23908855 75 3.09e-04 GCGTATGTGC GTGTTTGG ATGTACGTAT chr3L:4999594-4999714 8 3.09e-04 GAATGTT TTGTTTAC AGGGGCAGCG chr2R:10808866-10808986 2 3.09e-04 T TTGTTTAC AATTCGCAGG chr2R:12730001-12730121 33 3.24e-04 TTTTGGCCTC TTGTTTGA CTTTGCCCAA chr3L:5952707-5952827 43 3.74e-04 ACTTGGCAGC GTGTTTTT TGTCGCCGCG chr3L:7988580-7988700 104 3.74e-04 ACAtgtgcgt gtgcttgt gcctgtgcc chr3R:14743599-14743719 104 3.74e-04 GTGCTTCACT GTGCTTGT TGTTTTTGT chr2R:23886733-23886853 25 3.74e-04 TGCAAAGATC GTGCTTGT GCTCCGAGAG chr3L:592389-592509 25 3.74e-04 CCAAACGAAT GTGTTTTT TGGTGGGTGA chr2L:6252935-6253055 96 4.41e-04 GCTGGTTCGT CTGTGTGC GTGTGGATGA chr2R:23787693-23787813 28 4.41e-04 CATTTGAAAC GTGTTTTC GACCACAGCC chr3L:13135012-13135132 98 4.41e-04 AGAGTATGCA GTGTTTTC ACCTGTCAAC chr2R:8244616-8244736 28 4.89e-04 CCCTTTCGTT TTGTGTAC TGGCCTGCTC chr3R:5104293-5104413 98 5.57e-04 GGTCTTAGTT TTGTTTGG TCCGTGTTTC chr3R:9027178-9027298 79 5.57e-04 GTCAGCCCAC GTGCGTGT GTCAGAAGAC chr3R:16216761-16216881 78 5.57e-04 CTGTGGCCCC GTGCGTGT ATGCATGTGa chr3L:321620-321740 14 5.57e-04 CACACAGGAT GTGCGTGT CATCAGACAG chr2R:13569157-13569277 9 5.57e-04 AAAACTAT TTGTTTGG CCTGAGCCAT chr2L:6553786-6553906 4 6.08e-04 TGG CTGTTTAT GTTGGTGGCT chr3R:25983407-25983527 51 6.08e-04 CCTTGCGAGT GTGCGTGC CTCACCCGCT chr3L:7961787-7961907 15 6.08e-04 GCCTTTACAT CTGTTTAT AATTGAAAAT chrX:9644970-9645090 88 6.38e-04 GCGAGATTAA GTGTGTAA ATGGGATATA chr2R:18670330-18670450 89 6.84e-04 TCAGCACGCG TTGTTTTT CACGCTTCGC chrX:10930779-10930899 71 7.31e-04 ATTTCAGTTG CTGTTTGA CTGCCGGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKTGY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14917412-14917532 1.7e-05 70_[+2]_42 chr3L:8830555-8830675 1.7e-05 79_[+2]_33 chr2R:8683518-8683638 1.7e-05 49_[+2]_63 chr3R:26003207-26003327 1.7e-05 94_[+2]_18 chrX:3358488-3358608 1.7e-05 93_[+2]_19 chr3R:9603713-9603833 1.7e-05 31_[+2]_81 chr3R:22780472-22780592 3.4e-05 103_[+2]_9 chr2R:21888985-21889105 3.4e-05 74_[+2]_38 chr3R:8251706-8251826 3.4e-05 88_[+2]_24 chr3L:11345675-11345795 3.4e-05 5_[+2]_107 chr2L:14433070-14433190 3.4e-05 63_[+2]_49 chr2R:20600798-20600918 5.2e-05 94_[+2]_18 chr2L:8411541-8411661 5.2e-05 27_[+2]_85 chr3L:1431495-1431615 5.2e-05 110_[+2]_2 chr3L:10766907-10767027 5.2e-05 42_[+2]_70 chr2L:10499744-10499864 5.2e-05 72_[+2]_40 chrX:6908257-6908377 5.2e-05 69_[+2]_43 chrX:14627173-14627293 5.2e-05 42_[+2]_70 chr2R:23982195-23982315 5.2e-05 24_[+2]_88 chr2L:19263646-19263766 5.2e-05 104_[+2]_8 chr3L:1360247-1360367 5.2e-05 70_[+2]_42 chr3L:11454566-11454686 5.2e-05 87_[+2]_25 chrX:16457381-16457501 5.2e-05 83_[+2]_29 chr2L:8849984-8850104 7e-05 1_[+2]_111 chr3R:25996886-25997006 7e-05 21_[+2]_91 chr2R:24323386-24323506 8.6e-05 77_[+2]_35 chr3L:12063803-12063923 8.6e-05 37_[+2]_75 chr3R:10520310-10520430 0.0001 56_[+2]_56 chr3R:11350999-11351119 0.0001 86_[+2]_26 chr2R:18436255-18436375 0.0001 62_[+2]_50 chr2R:16820376-16820496 0.0001 73_[+2]_39 chr3R:19298324-19298444 0.0001 50_[+2]_62 chr2R:22824933-22825053 0.0001 62_[+2]_50 chr2L:19037160-19037280 0.00012 106_[+2]_6 chr3R:7650832-7650952 0.00012 30_[+2]_82 chrX:17481967-17482087 0.00013 75_[+2]_37 chr3R:11235691-11235811 0.00013 106_[+2]_6 chr2L:20881855-20881975 0.00018 14_[+2]_98 chr3R:21557090-21557210 0.00018 69_[+2]_43 chrX:17509710-17509830 0.00018 32_[+2]_80 chr2L:14642375-14642495 0.00018 93_[+2]_19 chr2L:19937919-19938039 0.00018 31_[+2]_81 chr3R:8850019-8850139 0.00018 34_[+2]_78 chr2L:14262971-14263091 0.00018 60_[+2]_52 chr3R:30474835-30474955 0.0002 93_[+2]_19 chr2R:9439846-9439966 0.00021 55_[+2]_57 chr2R:18667157-18667277 0.00021 87_[+2]_25 chr3L:20367172-20367292 0.00021 80_[+2]_32 chr2R:22120422-22120542 0.00021 26_[+2]_86 chr3R:26009352-26009472 0.00023 78_[+2]_34 chr3R:21828632-21828752 0.00023 18_[+2]_94 chrX:2383232-2383352 0.00028 39_[+2]_73 chr3L:11588688-11588808 0.00028 62_[+2]_50 chr3R:29268121-29268241 0.00028 64_[+2]_48 chr3R:7646042-7646162 0.00028 101_[+2]_11 chr2L:19037589-19037709 0.00028 27_[+2]_85 chr3L:20404679-20404799 0.00031 67_[+2]_45 chr3L:34781-34901 0.00031 4_[+2]_108 chr3R:6215437-6215557 0.00031 35_[+2]_77 chr2R:23908735-23908855 0.00031 74_[+2]_38 chr3L:4999594-4999714 0.00031 7_[+2]_105 chr2R:10808866-10808986 0.00031 1_[+2]_111 chr2R:12730001-12730121 0.00032 32_[+2]_80 chr3L:5952707-5952827 0.00037 42_[+2]_70 chr3L:7988580-7988700 0.00037 103_[+2]_9 chr3R:14743599-14743719 0.00037 103_[+2]_9 chr2R:23886733-23886853 0.00037 24_[+2]_88 chr3L:592389-592509 0.00037 24_[+2]_88 chr2L:6252935-6253055 0.00044 95_[+2]_17 chr2R:23787693-23787813 0.00044 27_[+2]_85 chr3L:13135012-13135132 0.00044 97_[+2]_15 chr2R:8244616-8244736 0.00049 27_[+2]_85 chr3R:5104293-5104413 0.00056 97_[+2]_15 chr3R:9027178-9027298 0.00056 78_[+2]_34 chr3R:16216761-16216881 0.00056 77_[+2]_35 chr3L:321620-321740 0.00056 13_[+2]_99 chr2R:13569157-13569277 0.00056 8_[+2]_104 chr2L:6553786-6553906 0.00061 3_[+2]_109 chr3R:25983407-25983527 0.00061 50_[+2]_62 chr3L:7961787-7961907 0.00061 14_[+2]_98 chrX:9644970-9645090 0.00064 87_[+2]_25 chr2R:18670330-18670450 0.00068 88_[+2]_24 chrX:10930779-10930899 0.00073 70_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKTGY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTKTGY width=8 seqs=83 chr2R:14917412-14917532 ( 71) GTGTTTGT 1 chr3L:8830555-8830675 ( 80) GTGTTTGT 1 chr2R:8683518-8683638 ( 50) GTGTTTGT 1 chr3R:26003207-26003327 ( 95) GTGTTTGT 1 chrX:3358488-3358608 ( 94) GTGTTTGT 1 chr3R:9603713-9603833 ( 32) GTGTTTGT 1 chr3R:22780472-22780592 ( 104) GTGTTTGC 1 chr2R:21888985-21889105 ( 75) GTGTTTGC 1 chr3R:8251706-8251826 ( 89) GTGTTTGC 1 chr3L:11345675-11345795 ( 6) GTGTTTGC 1 chr2L:14433070-14433190 ( 64) GTGTTTGC 1 chr2R:20600798-20600918 ( 95) GTGTGTGT 1 chr2L:8411541-8411661 ( 28) GTGTGTGT 1 chr3L:1431495-1431615 ( 111) GTGTGTGT 1 chr3L:10766907-10767027 ( 43) GTGTGTGT 1 chr2L:10499744-10499864 ( 73) GTGTGTGT 1 chrX:6908257-6908377 ( 70) GTGTGTGT 1 chrX:14627173-14627293 ( 43) GTGTGTGT 1 chr2R:23982195-23982315 ( 25) GTGTGTGT 1 chr2L:19263646-19263766 ( 105) GTGTGTGT 1 chr3L:1360247-1360367 ( 71) GTGTGTGT 1 chr3L:11454566-11454686 ( 88) GTGTGTGT 1 chrX:16457381-16457501 ( 84) GTGTGTGT 1 chr2L:8849984-8850104 ( 2) GTGTGTGC 1 chr3R:25996886-25997006 ( 22) GTGTGTGC 1 chr2R:24323386-24323506 ( 78) TTGTTTGT 1 chr3L:12063803-12063923 ( 38) TTGTTTGT 1 chr3R:10520310-10520430 ( 57) TTGTTTGC 1 chr3R:11350999-11351119 ( 87) TTGTTTGC 1 chr2R:18436255-18436375 ( 63) TTGTTTGC 1 chr2R:16820376-16820496 ( 74) TTGTTTGC 1 chr3R:19298324-19298444 ( 51) TTGTTTGC 1 chr2R:22824933-22825053 ( 63) TTGTTTGC 1 chr2L:19037160-19037280 ( 107) GTGTTTAT 1 chr3R:7650832-7650952 ( 31) GTGTTTAT 1 chrX:17481967-17482087 ( 76) GTGTTTAC 1 chr3R:11235691-11235811 ( 107) GTGTTTAC 1 chr2L:20881855-20881975 ( 15) TTGTGTGC 1 chr3R:21557090-21557210 ( 70) TTGTGTGC 1 chrX:17509710-17509830 ( 33) TTGTGTGC 1 chr2L:14642375-14642495 ( 94) TTGTGTGC 1 chr2L:19937919-19938039 ( 32) GTGTTTGA 1 chr3R:8850019-8850139 ( 35) GTGTTTGA 1 chr2L:14262971-14263091 ( 61) GTGTTTGA 1 chr3R:30474835-30474955 ( 94) GTGTGTAT 1 chr2R:9439846-9439966 ( 56) GTGTGTAC 1 chr2R:18667157-18667277 ( 88) GTGTGTAC 1 chr3L:20367172-20367292 ( 81) GTGTGTAC 1 chr2R:22120422-22120542 ( 27) GTGTGTAC 1 chr3R:26009352-26009472 ( 79) CTGTTTGT 1 chr3R:21828632-21828752 ( 19) CTGTTTGT 1 chrX:2383232-2383352 ( 40) CTGTTTGC 1 chr3L:11588688-11588808 ( 63) GTGTGTGA 1 chr3R:29268121-29268241 ( 65) CTGTTTGC 1 chr3R:7646042-7646162 ( 102) GTGTGTGA 1 chr2L:19037589-19037709 ( 28) TTGTTTAT 1 chr3L:20404679-20404799 ( 68) GTGTTTGG 1 chr3L:34781-34901 ( 5) GTGTTTGG 1 chr3R:6215437-6215557 ( 36) TTGTTTAC 1 chr2R:23908735-23908855 ( 75) GTGTTTGG 1 chr3L:4999594-4999714 ( 8) TTGTTTAC 1 chr2R:10808866-10808986 ( 2) TTGTTTAC 1 chr2R:12730001-12730121 ( 33) TTGTTTGA 1 chr3L:5952707-5952827 ( 43) GTGTTTTT 1 chr3L:7988580-7988700 ( 104) GTGCTTGT 1 chr3R:14743599-14743719 ( 104) GTGCTTGT 1 chr2R:23886733-23886853 ( 25) GTGCTTGT 1 chr3L:592389-592509 ( 25) GTGTTTTT 1 chr2L:6252935-6253055 ( 96) CTGTGTGC 1 chr2R:23787693-23787813 ( 28) GTGTTTTC 1 chr3L:13135012-13135132 ( 98) GTGTTTTC 1 chr2R:8244616-8244736 ( 28) TTGTGTAC 1 chr3R:5104293-5104413 ( 98) TTGTTTGG 1 chr3R:9027178-9027298 ( 79) GTGCGTGT 1 chr3R:16216761-16216881 ( 78) GTGCGTGT 1 chr3L:321620-321740 ( 14) GTGCGTGT 1 chr2R:13569157-13569277 ( 9) TTGTTTGG 1 chr2L:6553786-6553906 ( 4) CTGTTTAT 1 chr3R:25983407-25983527 ( 51) GTGCGTGC 1 chr3L:7961787-7961907 ( 15) CTGTTTAT 1 chrX:9644970-9645090 ( 88) GTGTGTAA 1 chr2R:18670330-18670450 ( 89) TTGTTTTT 1 chrX:10930779-10930899 ( 71) CTGTTTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKTGY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.90672 E= 2.0e-007 -1302 -141 130 4 -1302 -1302 -1302 202 -1302 -1302 192 -1302 -1302 -160 -1302 190 -1302 -1302 55 132 -1302 -1302 -1302 202 -20 -1302 148 -203 -128 64 -213 86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKTGY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 2.0e-007 0.000000 0.096386 0.650602 0.253012 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.084337 0.000000 0.915663 0.000000 0.000000 0.385542 0.614458 0.000000 0.000000 0.000000 1.000000 0.204819 0.000000 0.734940 0.060241 0.096386 0.397590 0.060241 0.445783 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKTGY MEME-2 regular expression -------------------------------------------------------------------------------- [GT]TGT[TG]T[GA][TC] -------------------------------------------------------------------------------- Time 14.91 secs. ******************************************************************************** ******************************************************************************** MOTIF WMAACAVA MEME-3 width = 8 sites = 37 llr = 317 E-value = 1.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif WMAACAVA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 56aa:a4a pos.-specific C 24::a:2: probability G ::::::4: matrix T 3::::::: bits 2.1 ** * * 1.9 **** * 1.7 **** * 1.5 **** * Relative 1.3 **** * Entropy 1.0 ***** * (12.4 bits) 0.8 ***** * 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAACAAA consensus TC G sequence C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMAACAVA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6178559-6178679 97 1.01e-05 GGGGAGGGTA AAAACAAA TCAACAGTTC chr2R:8653915-8654035 75 1.01e-05 CTGCTCACGA AAAACAAA CACAAACACA chr2R:18436255-18436375 13 1.01e-05 GAACGAAGCC AAAACAAA CAGAAATACA chr3R:5229592-5229712 90 1.01e-05 TGATTCACAG AAAACAAA CAGCGGGGGT chr3L:15329729-15329849 85 2.15e-05 GGTTCTCTCG AAAacaga aacacacact chrX:5085684-5085804 109 2.15e-05 GAGAAGCCGA AAAACAGA GGAC chr2L:7577748-7577868 90 2.15e-05 CGAAAACCCG AAAACAGA TAACCAACTG chrX:3741774-3741894 48 3.26e-05 TTTGCTCCAT ACAACAAA TACCATGGGT chr2L:16281488-16281608 84 3.26e-05 CCGAGAAAGA ACAACAAA GACACAGGTA chr3R:29716126-29716246 89 3.26e-05 ACAGCAGCCG ACAACAAA CGCAAGAGAT chr3R:6215437-6215557 87 3.26e-05 GCTGGCAAAG ACAACAAA GGCAGAGAAG chr2R:18667157-18667277 28 5.42e-05 GGCTCGGGCC TAAACAAA TGTTGGCACT chr3L:13227638-13227758 4 5.42e-05 TGG TAAACAAA AAGCATCTGA chr3L:12482403-12482523 87 5.42e-05 ACGTTCGGTG TAAACAAA CCGCAGTAGT chrX:14627173-14627293 73 5.42e-05 ATCTGGCAGA TAAACAAA ACAGCAGCTA chr2R:14223084-14223204 105 5.42e-05 TACTTCCTTC AAAACACA TCCATATC chr3L:11345675-11345795 64 5.42e-05 TAGGCGTATG TAAACAAA TTCGAATTTG chrX:20721549-20721669 13 5.42e-05 CCCAAACTAT AAAACACA TGCGGGCGGA chrX:2191980-2192100 96 6.66e-05 CGGGTACACA ACAACAGA AATCCGTATT chr2R:13623480-13623600 18 6.66e-05 TATATAAACA ACAACAGA ACCCTGAACT chr2R:10808866-10808986 79 6.66e-05 AAATCGCACA ACAACAGA AGGTGCCGAA chr3L:12729375-12729495 103 7.85e-05 GTGAGAATGG TAAACAGA GCGCTGGGCT chr2L:11045620-11045740 83 1.13e-04 AAATAGGTCA ACAACACA CTTGTCGATG chrX:3832354-3832474 82 1.13e-04 CGGACcaaac caaacaaa caaacaggca chr2L:18561845-18561965 40 1.13e-04 GATCAGAGTG ACAACACA AGCGAATTGA chr2R:13569157-13569277 84 1.13e-04 CACGGTTTTC CAAACAAA AGGCAGCAGG chr3L:321620-321740 81 1.25e-04 CTGCGCAGGG TAAACACA CCCTGTGGCA chrX:9644970-9645090 106 1.50e-04 ATGGGATATA TCAACAGA TGTGCCA chr2R:18293278-18293398 54 1.50e-04 CTTCATTCCC TCAACAGA TCTTTTGTTC chr3L:15669847-15669967 40 1.50e-04 TCCGAAAACT CAAACAGA TGCCAGTCCG chr3L:7961787-7961907 106 1.50e-04 GTCATTAGTG TCAACAGA CTCGGAA chr3R:19298324-19298444 65 1.50e-04 TTGCCTTTGA CAAACAGA AAGGCAAAAG chr2R:12663127-12663247 88 1.87e-04 CATTTAGCTA TCAACACA TTGCAAGGGG chr3L:8846644-8846764 16 1.87e-04 CGCAGATGCA CAAACACA TGCGCACACA chr3R:21557090-21557210 53 2.00e-04 AGTTCTTAAT CCAACAGA TGTGCCGTGT chr2R:8062528-8062648 33 2.13e-04 CTCCGGCACA CCAACACA CATTCGCCCA chr3L:22456936-22457056 18 2.13e-04 TTTACAAGTA CCAacaca cacgcttaca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMAACAVA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6178559-6178679 1e-05 96_[+3]_16 chr2R:8653915-8654035 1e-05 74_[+3]_38 chr2R:18436255-18436375 1e-05 12_[+3]_100 chr3R:5229592-5229712 1e-05 89_[+3]_23 chr3L:15329729-15329849 2.2e-05 84_[+3]_28 chrX:5085684-5085804 2.2e-05 108_[+3]_4 chr2L:7577748-7577868 2.2e-05 89_[+3]_23 chrX:3741774-3741894 3.3e-05 47_[+3]_65 chr2L:16281488-16281608 3.3e-05 83_[+3]_29 chr3R:29716126-29716246 3.3e-05 88_[+3]_24 chr3R:6215437-6215557 3.3e-05 86_[+3]_26 chr2R:18667157-18667277 5.4e-05 27_[+3]_85 chr3L:13227638-13227758 5.4e-05 3_[+3]_109 chr3L:12482403-12482523 5.4e-05 86_[+3]_26 chrX:14627173-14627293 5.4e-05 72_[+3]_40 chr2R:14223084-14223204 5.4e-05 104_[+3]_8 chr3L:11345675-11345795 5.4e-05 63_[+3]_49 chrX:20721549-20721669 5.4e-05 12_[+3]_100 chrX:2191980-2192100 6.7e-05 95_[+3]_17 chr2R:13623480-13623600 6.7e-05 17_[+3]_95 chr2R:10808866-10808986 6.7e-05 78_[+3]_34 chr3L:12729375-12729495 7.9e-05 102_[+3]_10 chr2L:11045620-11045740 0.00011 82_[+3]_30 chrX:3832354-3832474 0.00011 81_[+3]_31 chr2L:18561845-18561965 0.00011 39_[+3]_73 chr2R:13569157-13569277 0.00011 83_[+3]_29 chr3L:321620-321740 0.00012 80_[+3]_32 chrX:9644970-9645090 0.00015 105_[+3]_7 chr2R:18293278-18293398 0.00015 53_[+3]_59 chr3L:15669847-15669967 0.00015 39_[+3]_73 chr3L:7961787-7961907 0.00015 105_[+3]_7 chr3R:19298324-19298444 0.00015 64_[+3]_48 chr2R:12663127-12663247 0.00019 87_[+3]_25 chr3L:8846644-8846764 0.00019 15_[+3]_97 chr3R:21557090-21557210 0.0002 52_[+3]_60 chr2R:8062528-8062648 0.00021 32_[+3]_80 chr3L:22456936-22457056 0.00021 17_[+3]_95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMAACAVA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WMAACAVA width=8 seqs=37 chr2L:6178559-6178679 ( 97) AAAACAAA 1 chr2R:8653915-8654035 ( 75) AAAACAAA 1 chr2R:18436255-18436375 ( 13) AAAACAAA 1 chr3R:5229592-5229712 ( 90) AAAACAAA 1 chr3L:15329729-15329849 ( 85) AAAACAGA 1 chrX:5085684-5085804 ( 109) AAAACAGA 1 chr2L:7577748-7577868 ( 90) AAAACAGA 1 chrX:3741774-3741894 ( 48) ACAACAAA 1 chr2L:16281488-16281608 ( 84) ACAACAAA 1 chr3R:29716126-29716246 ( 89) ACAACAAA 1 chr3R:6215437-6215557 ( 87) ACAACAAA 1 chr2R:18667157-18667277 ( 28) TAAACAAA 1 chr3L:13227638-13227758 ( 4) TAAACAAA 1 chr3L:12482403-12482523 ( 87) TAAACAAA 1 chrX:14627173-14627293 ( 73) TAAACAAA 1 chr2R:14223084-14223204 ( 105) AAAACACA 1 chr3L:11345675-11345795 ( 64) TAAACAAA 1 chrX:20721549-20721669 ( 13) AAAACACA 1 chrX:2191980-2192100 ( 96) ACAACAGA 1 chr2R:13623480-13623600 ( 18) ACAACAGA 1 chr2R:10808866-10808986 ( 79) ACAACAGA 1 chr3L:12729375-12729495 ( 103) TAAACAGA 1 chr2L:11045620-11045740 ( 83) ACAACACA 1 chrX:3832354-3832474 ( 82) CAAACAAA 1 chr2L:18561845-18561965 ( 40) ACAACACA 1 chr2R:13569157-13569277 ( 84) CAAACAAA 1 chr3L:321620-321740 ( 81) TAAACACA 1 chrX:9644970-9645090 ( 106) TCAACAGA 1 chr2R:18293278-18293398 ( 54) TCAACAGA 1 chr3L:15669847-15669967 ( 40) CAAACAGA 1 chr3L:7961787-7961907 ( 106) TCAACAGA 1 chr3R:19298324-19298444 ( 65) CAAACAGA 1 chr2R:12663127-12663247 ( 88) TCAACACA 1 chr3L:8846644-8846764 ( 16) CAAACACA 1 chr3R:21557090-21557210 ( 53) CCAACAGA 1 chr2R:8062528-8062648 ( 33) CCAACACA 1 chr3L:22456936-22457056 ( 18) CCAACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMAACAVA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6156 E= 1.7e-001 105 -24 -1185 27 127 76 -1185 -1185 209 -1185 -1185 -1185 209 -1185 -1185 -1185 -1185 197 -1185 -1185 209 -1185 -1185 -1185 79 -7 41 -1185 209 -1185 -1185 -1185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMAACAVA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 1.7e-001 0.486486 0.216216 0.000000 0.297297 0.567568 0.432432 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.405405 0.243243 0.351351 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMAACAVA MEME-3 regular expression -------------------------------------------------------------------------------- [ATC][AC]AACA[AGC]A -------------------------------------------------------------------------------- Time 21.01 secs. ******************************************************************************** ******************************************************************************** MOTIF TATGTACA MEME-4 width = 8 sites = 14 llr = 139 E-value = 9.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATGTACA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:::a:a pos.-specific C ::::::7: probability G :::81::: matrix T a:a29:3: bits 2.1 *** * * 1.9 *** * * 1.7 *** ** * 1.5 *** ** * Relative 1.3 ****** * Entropy 1.0 ******** (14.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATGTACA consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGTACA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:18670330-18670450 27 1.31e-05 CTGTATCCTA TATGTACA TATAGCATAT chr3L:14782448-14782568 56 1.31e-05 CTGATAGCAT TATGTACA TGCTATTGGG chr3L:2853091-2853211 6 1.31e-05 CGGTA TATGTACA CCACTGCCAT chr2R:6158055-6158175 38 1.31e-05 CAAACATACA TATGTACA TACTCTTGTT chr2R:23908735-23908855 44 1.31e-05 CACCTCTGCG TATGTACA TATGTACATG chr3R:7650832-7650952 106 1.31e-05 CACGTATGTA TATGTACA TATCCCC chr3L:17657126-17657246 65 1.31e-05 CGTACGGATA TATGTACA GTACAAATGT chrX:9644970-9645090 1 2.56e-05 . tatgtata tACTGTACAC chr2R:21888985-21889105 40 2.56e-05 CTTATAAATG TATGTATA GTCCGTGTAA chrX:457201-457321 100 2.56e-05 TACGGAGCTC TATGTATA TGAACATAAC chr2L:7491476-7491596 91 3.78e-05 TCAATGTCAA TATTTACA CGACTATCGC chr3L:22456936-22457056 6 3.78e-05 TGTCG TATTTACA AGTACCAaca chr2L:19037589-19037709 9 4.95e-05 ATTATGGG TATTTATA GTCACGGCGC chr2R:13375457-13375577 4 6.35e-05 ATA TATGGACA TACTGGTTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGTACA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18670330-18670450 1.3e-05 26_[+4]_86 chr3L:14782448-14782568 1.3e-05 55_[+4]_57 chr3L:2853091-2853211 1.3e-05 5_[+4]_107 chr2R:6158055-6158175 1.3e-05 37_[+4]_75 chr2R:23908735-23908855 1.3e-05 43_[+4]_69 chr3R:7650832-7650952 1.3e-05 105_[+4]_7 chr3L:17657126-17657246 1.3e-05 64_[+4]_48 chrX:9644970-9645090 2.6e-05 [+4]_112 chr2R:21888985-21889105 2.6e-05 39_[+4]_73 chrX:457201-457321 2.6e-05 99_[+4]_13 chr2L:7491476-7491596 3.8e-05 90_[+4]_22 chr3L:22456936-22457056 3.8e-05 5_[+4]_107 chr2L:19037589-19037709 4.9e-05 8_[+4]_104 chr2R:13375457-13375577 6.3e-05 3_[+4]_109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGTACA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATGTACA width=8 seqs=14 chr2R:18670330-18670450 ( 27) TATGTACA 1 chr3L:14782448-14782568 ( 56) TATGTACA 1 chr3L:2853091-2853211 ( 6) TATGTACA 1 chr2R:6158055-6158175 ( 38) TATGTACA 1 chr2R:23908735-23908855 ( 44) TATGTACA 1 chr3R:7650832-7650952 ( 106) TATGTACA 1 chr3L:17657126-17657246 ( 65) TATGTACA 1 chrX:9644970-9645090 ( 1) TATGTATA 1 chr2R:21888985-21889105 ( 40) TATGTATA 1 chrX:457201-457321 ( 100) TATGTATA 1 chr2L:7491476-7491596 ( 91) TATTTACA 1 chr3L:22456936-22457056 ( 6) TATTTACA 1 chr2L:19037589-19037709 ( 9) TATTTATA 1 chr2R:13375457-13375577 ( 4) TATGGACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGTACA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 9.7e+003 -1045 -1045 -1045 202 209 -1045 -1045 -1045 -1045 -1045 -1045 202 -1045 -1045 157 -20 -1045 -1045 -188 192 209 -1045 -1045 -1045 -1045 148 -1045 22 209 -1045 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGTACA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 9.7e+003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.785714 0.214286 0.000000 0.000000 0.071429 0.928571 1.000000 0.000000 0.000000 0.000000 0.000000 0.714286 0.000000 0.285714 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGTACA MEME-4 regular expression -------------------------------------------------------------------------------- TAT[GT]TA[CT]A -------------------------------------------------------------------------------- Time 27.63 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCTGYTG MEME-5 width = 8 sites = 35 llr = 291 E-value = 3.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCTGYTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::1:: pos.-specific C ::71:5:: probability G :a:2a1:a matrix T a:37:3a: bits 2.1 * * 1.9 ** * ** 1.7 ** * ** 1.5 ** * ** Relative 1.3 ** * ** Entropy 1.0 *** * ** (12.0 bits) 0.8 ***** ** 0.6 ***** ** 0.4 ***** ** 0.2 ******** 0.0 -------- Multilevel TGCTGCTG consensus TG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGYTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17974787-17974907 100 1.80e-05 tcgctggctc tgctgctg cgctgctgGC chr3R:27437444-27437564 88 1.80e-05 ctgctgctgc tgctgctg ctgcatgttg chr3L:5952707-5952827 11 1.80e-05 cgccagttgc tgctgctg ctgTGCGCCG chr3R:21557090-21557210 109 1.80e-05 Atgctgatgc tgctgctg ctgc chr2L:20859112-20859232 2 1.80e-05 T TGCTGCTG GAGCTGCGCT chr3R:16216761-16216881 35 1.80e-05 ctgctgctac tgctgctg ttgccgcCTC chr3L:18101853-18101973 20 1.80e-05 TTGTTGCGGC TGCTGCTG CGTCTGCGCA chr2L:16281488-16281608 29 1.80e-05 TGGCTGCTCG TGCTGCTG CAGGCTAATG chrX:3832354-3832474 25 3.52e-05 ATGCCGCAAA TGCTGTTG ATCTTGGTAC chr2L:8690024-8690144 1 3.52e-05 . TGCTGTTG TTGTTGTTGC chr2R:6964622-6964742 88 5.25e-05 atgttgttgg tgttgctg gtgttgttgg chr3R:29716126-29716246 48 5.25e-05 TGGCGCCATC TGTTGCTG AGCAGAGGCG chr2R:19373161-19373281 67 7.17e-05 CGTctgcggc tgcggctg ctgcactgcg chrX:2191980-2192100 75 8.83e-05 GCCGGATAGT TGTTGTTG TCCCGGGTAC chr3R:9027178-9027298 62 8.83e-05 GCGCCGTGCC TGTTGTTG TCAGCCCACG chr3R:16933464-16933584 86 8.83e-05 AGAGTAACTT TGTTGTTG CACAGGGGAT chr2L:18561845-18561965 82 8.83e-05 CCTGTCTGCT TGTTGTTG GAGGAAGAGG chr2R:24323386-24323506 56 8.83e-05 ACGCtgttgt tgttgttg ttgttcctgt chr3R:6215437-6215557 15 8.83e-05 TTGGCCTCTT TGTTGTTG GGAATTAGGT chr3R:26013234-26013354 8 1.05e-04 TTGATAA TGCTGATG ACACTGTTCA chr3R:25996886-25997006 12 1.05e-04 GTCATGTCGC TGCTGATg tcgtgtgtgc chr2R:12663127-12663247 63 1.23e-04 ggattggtag tgcggttg ggGCAGGCAT chr3L:22134725-22134845 84 1.23e-04 GATAGGATTG TGCGGTTG ACAGTTGAAT chr3R:16631059-16631179 85 1.23e-04 CCGCAGAGTG TGCGGTTG CATGTGGCCT chr2L:7089851-7089971 28 1.42e-04 GACTTTCCAC TGCTGGTG GCTACCAGCT chr3L:11588688-11588808 76 1.42e-04 TGTGAGTGTA TGCTGGTG TGTAAGGGGG chr3R:23758622-23758742 51 1.42e-04 CAGCCGTTAG TGCTGGTG AAAGTTACAG chr3L:8560139-8560259 10 1.60e-04 CCAACCCTC TGCCGCTG GCTCAGCCGC chr3L:16896565-16896685 62 1.60e-04 TTCGCAAAGC TGCCGCTG GATGGCGCCA chr3L:8846644-8846764 112 1.60e-04 CGACTAACTG TGCCGCTG A chr3L:18268209-18268329 81 1.60e-04 ACTTGACACT TGCCGCTG ACTTGTGGCA chrX:13089543-13089663 54 1.79e-04 GGGTGGCGGA TGTGGCTG CGGATGCGGA chr3R:9603713-9603833 6 1.79e-04 CCTTT TGTGGCTG CACTCGTGCA chr2L:20881855-20881975 74 2.48e-04 TCACGTGTGC TGCGGATG GAGAGGTGTG chr2L:10544835-10544955 83 2.48e-04 TCGGTCGTGT TGCGGATG CCCAAAATCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGYTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17974787-17974907 1.8e-05 99_[+5]_13 chr3R:27437444-27437564 1.8e-05 87_[+5]_25 chr3L:5952707-5952827 1.8e-05 10_[+5]_102 chr3R:21557090-21557210 1.8e-05 108_[+5]_4 chr2L:20859112-20859232 1.8e-05 1_[+5]_111 chr3R:16216761-16216881 1.8e-05 34_[+5]_78 chr3L:18101853-18101973 1.8e-05 19_[+5]_93 chr2L:16281488-16281608 1.8e-05 28_[+5]_84 chrX:3832354-3832474 3.5e-05 24_[+5]_88 chr2L:8690024-8690144 3.5e-05 [+5]_112 chr2R:6964622-6964742 5.2e-05 87_[+5]_25 chr3R:29716126-29716246 5.2e-05 47_[+5]_65 chr2R:19373161-19373281 7.2e-05 66_[+5]_46 chrX:2191980-2192100 8.8e-05 74_[+5]_38 chr3R:9027178-9027298 8.8e-05 61_[+5]_51 chr3R:16933464-16933584 8.8e-05 85_[+5]_27 chr2L:18561845-18561965 8.8e-05 81_[+5]_31 chr2R:24323386-24323506 8.8e-05 55_[+5]_57 chr3R:6215437-6215557 8.8e-05 14_[+5]_98 chr3R:26013234-26013354 0.0001 7_[+5]_105 chr3R:25996886-25997006 0.0001 11_[+5]_101 chr2R:12663127-12663247 0.00012 62_[+5]_50 chr3L:22134725-22134845 0.00012 83_[+5]_29 chr3R:16631059-16631179 0.00012 84_[+5]_28 chr2L:7089851-7089971 0.00014 27_[+5]_85 chr3L:11588688-11588808 0.00014 75_[+5]_37 chr3R:23758622-23758742 0.00014 50_[+5]_62 chr3L:8560139-8560259 0.00016 9_[+5]_103 chr3L:16896565-16896685 0.00016 61_[+5]_51 chr3L:8846644-8846764 0.00016 111_[+5]_1 chr3L:18268209-18268329 0.00016 80_[+5]_32 chrX:13089543-13089663 0.00018 53_[+5]_59 chr3R:9603713-9603833 0.00018 5_[+5]_107 chr2L:20881855-20881975 0.00025 73_[+5]_39 chr2L:10544835-10544955 0.00025 82_[+5]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGYTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCTGYTG width=8 seqs=35 chr3L:17974787-17974907 ( 100) TGCTGCTG 1 chr3R:27437444-27437564 ( 88) TGCTGCTG 1 chr3L:5952707-5952827 ( 11) TGCTGCTG 1 chr3R:21557090-21557210 ( 109) TGCTGCTG 1 chr2L:20859112-20859232 ( 2) TGCTGCTG 1 chr3R:16216761-16216881 ( 35) TGCTGCTG 1 chr3L:18101853-18101973 ( 20) TGCTGCTG 1 chr2L:16281488-16281608 ( 29) TGCTGCTG 1 chrX:3832354-3832474 ( 25) TGCTGTTG 1 chr2L:8690024-8690144 ( 1) TGCTGTTG 1 chr2R:6964622-6964742 ( 88) TGTTGCTG 1 chr3R:29716126-29716246 ( 48) TGTTGCTG 1 chr2R:19373161-19373281 ( 67) TGCGGCTG 1 chrX:2191980-2192100 ( 75) TGTTGTTG 1 chr3R:9027178-9027298 ( 62) TGTTGTTG 1 chr3R:16933464-16933584 ( 86) TGTTGTTG 1 chr2L:18561845-18561965 ( 82) TGTTGTTG 1 chr2R:24323386-24323506 ( 56) TGTTGTTG 1 chr3R:6215437-6215557 ( 15) TGTTGTTG 1 chr3R:26013234-26013354 ( 8) TGCTGATG 1 chr3R:25996886-25997006 ( 12) TGCTGATG 1 chr2R:12663127-12663247 ( 63) TGCGGTTG 1 chr3L:22134725-22134845 ( 84) TGCGGTTG 1 chr3R:16631059-16631179 ( 85) TGCGGTTG 1 chr2L:7089851-7089971 ( 28) TGCTGGTG 1 chr3L:11588688-11588808 ( 76) TGCTGGTG 1 chr3R:23758622-23758742 ( 51) TGCTGGTG 1 chr3L:8560139-8560259 ( 10) TGCCGCTG 1 chr3L:16896565-16896685 ( 62) TGCCGCTG 1 chr3L:8846644-8846764 ( 112) TGCCGCTG 1 chr3L:18268209-18268329 ( 81) TGCCGCTG 1 chrX:13089543-13089663 ( 54) TGTGGCTG 1 chr3R:9603713-9603833 ( 6) TGTGGCTG 1 chr2L:20881855-20881975 ( 74) TGCGGATG 1 chr2L:10544835-10544955 ( 83) TGCGGATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGYTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0411 E= 3.8e+004 -1177 -1177 -1177 202 -1177 -1177 192 -1177 -1177 148 -1177 22 -1177 -116 -21 142 -1177 -1177 192 -1177 -104 93 -162 35 -1177 -1177 -1177 202 -1177 -1177 192 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGYTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 3.8e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.000000 0.285714 0.000000 0.114286 0.228571 0.657143 0.000000 0.000000 1.000000 0.000000 0.114286 0.485714 0.085714 0.314286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGYTG MEME-5 regular expression -------------------------------------------------------------------------------- TG[CT][TG]G[CT]TG -------------------------------------------------------------------------------- Time 33.65 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:26006945-26007065 2.89e-01 120 chr3L:18268209-18268329 4.55e-01 120 chr2R:22120422-22120542 3.41e-02 120 chrX:16457381-16457501 2.11e-01 83_[+2(5.16e-05)]_29 chr3L:592389-592509 2.38e-01 120 chrX:5995198-5995318 5.85e-01 120 chr2R:10313047-10313167 8.65e-01 120 chr3R:9603713-9603833 1.66e-03 31_[+2(1.66e-05)]_81 chrX:20722059-20722179 6.90e-01 120 chr2L:5881061-5881181 5.96e-01 120 chr3L:11454566-11454686 4.27e-02 77_[+2(7.01e-05)]_2_[+2(5.16e-05)]_\ 25 chr3R:21828632-21828752 2.42e-02 120 chr2L:14433070-14433190 2.38e-01 63_[+2(3.38e-05)]_49 chr3L:22456936-22457056 2.30e-04 5_[+4(3.78e-05)]_20_[+1(1.31e-05)]_\ 79 chr3R:26018684-26018804 8.66e-01 120 chr3L:8846644-8846764 2.06e-04 15_[+1(6.61e-05)]_4_[+1(1.31e-05)]_\ 85 chr2L:19037589-19037709 2.81e-04 8_[+4(4.95e-05)]_104 chr2R:13569157-13569277 3.91e-02 120 chrX:20721549-20721669 9.73e-02 12_[+3(5.42e-05)]_100 chr2L:3018286-3018406 5.85e-01 120 chr3L:20447373-20447493 9.88e-01 120 chr3L:15330885-15331005 2.47e-01 120 chr2R:10808866-10808986 1.27e-03 78_[+3(6.66e-05)]_34 chr3L:17657126-17657246 8.30e-03 64_[+4(1.31e-05)]_48 chr2L:14262971-14263091 3.46e-01 120 chr2L:8690024-8690144 2.30e-01 [+5(3.52e-05)]_4_[+5(5.25e-05)]_100 chr3L:12063803-12063923 2.80e-02 37_[+2(8.56e-05)]_75 chr3L:4999594-4999714 7.30e-03 35_[+1(5.41e-05)]_77 chr3L:13214753-13214873 6.04e-01 120 chr3R:7650832-7650952 1.04e-02 105_[+4(1.31e-05)]_7 chr2R:22824933-22825053 1.30e-04 18_[+1(1.31e-05)]_94 chr3R:10284262-10284382 6.32e-02 23_[+1(4.04e-05)]_89 chr3L:18269100-18269220 3.56e-01 120 chr2R:23886733-23886853 9.84e-02 120 chr3R:8850019-8850139 1.71e-01 120 chr3L:18235552-18235672 2.92e-01 120 chr2R:17076108-17076228 6.39e-01 120 chr2L:4119502-4119622 7.29e-01 120 chr2R:14420772-14420892 9.90e-01 120 chr2R:23908735-23908855 1.27e-02 43_[+4(1.31e-05)]_[+4(1.31e-05)]_61 chr2L:20972580-20972700 6.66e-02 120 chr3R:17945904-17946024 3.91e-01 120 chr3R:19298324-19298444 3.13e-04 24_[+1(1.31e-05)]_88 chr2L:14683796-14683916 8.19e-01 120 chr3R:26009865-26009985 4.00e-01 120 chr3L:11345675-11345795 7.08e-06 5_[+2(3.38e-05)]_50_[+3(5.42e-05)]_\ 18_[+1(4.04e-05)]_23 chr3R:7646042-7646162 3.78e-01 120 chr2L:19037160-19037280 6.70e-02 120 chr3R:23758622-23758742 4.90e-02 120 chr3L:377269-377389 3.83e-01 120 chr2R:8802127-8802247 3.25e-01 120 chr3R:14743599-14743719 2.34e-01 120 chr3R:22125079-22125199 6.62e-01 120 chr3L:320934-321054 8.66e-01 120 chr2R:6158055-6158175 3.56e-04 37_[+4(1.31e-05)]_75 chr3L:297741-297861 2.15e-01 120 chrX:3358488-3358608 2.20e-02 43_[+2(5.16e-05)]_[+2(5.16e-05)]_\ [+2(5.16e-05)]_26_[+2(1.66e-05)]_19 chr3L:4431343-4431463 4.90e-02 31_[+1(1.31e-05)]_81 chr3R:25996886-25997006 3.92e-02 21_[+2(7.01e-05)]_91 chr3L:1360247-1360367 3.01e-02 70_[+2(5.16e-05)]_42 chr3L:16896565-16896685 2.53e-01 120 chr2L:19937919-19938039 8.50e-03 120 chr3R:26003207-26003327 1.44e-02 94_[+2(1.66e-05)]_18 chr3R:26009352-26009472 1.42e-01 120 chr2R:12662263-12662383 8.81e-02 120 chr3L:7961787-7961907 2.23e-02 120 chr2L:19263646-19263766 1.13e-01 104_[+2(5.16e-05)]_8 chr3L:18832895-18833015 1.88e-01 120 chr3R:30474835-30474955 1.10e-02 120 chr2R:8244616-8244736 1.69e-01 120 chr2R:14223084-14223204 6.90e-02 104_[+3(5.42e-05)]_8 chr3R:27597402-27597522 4.07e-01 120 chr3R:11235691-11235811 1.05e-01 120 chrX:8419712-8419832 1.65e-01 120 chr2L:6701725-6701845 4.00e-01 120 chrX:2796490-2796610 6.20e-01 120 chr3R:29268121-29268241 2.25e-02 120 chr3L:15669847-15669967 1.37e-01 120 chr3R:23788813-23788933 7.25e-01 120 chr3L:2853091-2853211 1.49e-02 5_[+4(1.31e-05)]_107 chr3R:14595539-14595659 1.83e-01 120 chr2L:14642375-14642495 5.42e-01 120 chr3R:26000881-26001001 1.29e-01 120 chr3L:11423730-11423850 9.96e-01 120 chr2R:9857923-9858043 4.83e-01 120 chr2L:6204246-6204366 4.01e-01 120 chr2R:19372770-19372890 1.47e-03 53_[+1(4.04e-05)]_59 chr2R:23982195-23982315 1.41e-01 20_[+2(5.16e-05)]_[+2(7.01e-05)]_84 chr3R:4866005-4866125 8.11e-01 120 chr3L:21591389-21591509 1.51e-01 120 chr3R:19934957-19935077 2.23e-01 120 chr2R:18337674-18337794 5.26e-01 120 chr3R:31722965-31723085 1.97e-02 75_[+1(1.31e-05)]_37 chr2R:15944898-15945018 2.32e-03 9_[+4(7.69e-05)]_[+1(1.31e-05)]_95 chr3R:29266839-29266959 9.54e-01 120 chr2R:19373161-19373281 3.35e-01 60_[+5(7.17e-05)]_52 chr3L:8560139-8560259 4.07e-01 120 chr3R:26012262-26012382 6.30e-01 120 chr2L:6550636-6550756 7.18e-01 120 chr3R:21372634-21372754 9.01e-01 120 chrX:10930779-10930899 2.82e-01 120 chr3R:6215437-6215557 4.08e-04 14_[+5(8.83e-05)]_64_[+3(3.26e-05)]_\ 26 chr3R:29716126-29716246 1.07e-03 47_[+5(5.25e-05)]_33_[+3(3.26e-05)]_\ 24 chr3R:5229592-5229712 1.84e-02 89_[+3(1.01e-05)]_23 chr3R:21600799-21600919 6.45e-01 120 chr2R:10313765-10313885 9.87e-02 16_[+1(1.31e-05)]_33_[+1(5.41e-05)]_\ 55 chr2L:7157653-7157773 2.09e-01 120 chr2R:16820376-16820496 3.48e-02 120 chr2L:16281488-16281608 8.06e-04 28_[+5(1.80e-05)]_47_[+3(3.26e-05)]_\ 29 chr2R:24323386-24323506 1.78e-02 49_[+5(8.83e-05)]_1_[+5(8.83e-05)]_\ 7_[+2(8.56e-05)]_39 chr2L:7491476-7491596 1.87e-01 90_[+4(3.78e-05)]_22 chr3L:11588688-11588808 1.87e-02 120 chr2L:18561845-18561965 9.07e-03 81_[+5(8.83e-05)]_31 chr3R:16631059-16631179 1.67e-01 120 chr3R:25636745-25636865 8.87e-01 120 chr2R:6964622-6964742 6.40e-02 60_[+5(8.83e-05)]_1_[+5(8.83e-05)]_\ 1_[+5(8.83e-05)]_1_[+5(5.25e-05)]_1_[+5(8.83e-05)]_16 chr3L:18768937-18769057 6.48e-01 120 chr3R:26440990-26441110 6.86e-01 120 chr3L:14782448-14782568 1.87e-02 55_[+4(1.31e-05)]_57 chrX:14627173-14627293 1.66e-03 42_[+2(5.16e-05)]_[+2(5.16e-05)]_14_\ [+3(5.42e-05)]_40 chr3L:18101853-18101973 2.86e-02 19_[+5(1.80e-05)]_93 chr3L:18224783-18224903 6.19e-01 120 chr2L:18361315-18361435 6.17e-01 120 chr3R:9024156-9024276 2.65e-01 120 chr3L:12729375-12729495 3.27e-01 102_[+3(7.85e-05)]_10 chr2L:8576632-8576752 1.29e-01 120 chr3R:21876395-21876515 5.21e-01 120 chr2R:12730001-12730121 3.11e-02 120 chr3L:901040-901160 3.40e-01 120 chr2L:7121117-7121237 6.13e-01 120 chr3L:321620-321740 3.26e-03 108_[+1(4.04e-05)]_4 chr2L:3152780-3152900 6.84e-01 120 chr3R:16933464-16933584 1.44e-02 22_[+1(4.04e-05)]_16_[+1(4.04e-05)]_\ 31_[+5(8.83e-05)]_27 chr3R:4993540-4993660 2.14e-01 120 chrX:457201-457321 1.13e-02 99_[+4(2.56e-05)]_13 chr2R:8683518-8683638 6.21e-02 49_[+2(1.66e-05)]_63 chr2R:13623480-13623600 7.02e-02 17_[+3(6.66e-05)]_95 chr2R:18412759-18412879 2.93e-01 120 chr2R:18436255-18436375 5.13e-05 12_[+3(1.01e-05)]_8_[+1(1.31e-05)]_\ 84 chrX:4563084-4563204 6.01e-01 120 chr3R:16227074-16227194 2.72e-01 52_[+1(4.04e-05)]_24_[+1(4.04e-05)]_\ 28 chr3L:13135012-13135132 1.16e-01 120 chr2L:7089851-7089971 6.86e-02 120 chr2R:23787693-23787813 3.42e-01 120 chr2L:7998263-7998383 9.29e-01 120 chr3R:17814632-17814752 8.93e-01 120 chr2R:8860297-8860417 9.99e-01 120 chr3R:25983407-25983527 8.85e-02 120 chr2L:20476935-20477055 7.61e-01 120 chr3L:8830555-8830675 1.81e-02 79_[+2(1.66e-05)]_33 chr2R:8062528-8062648 1.53e-03 81_[+1(1.31e-05)]_31 chr2R:14917412-14917532 5.97e-02 70_[+2(1.66e-05)]_42 chr2L:21035597-21035717 1.93e-01 120 chr2L:20488514-20488634 7.47e-01 120 chr3L:34781-34901 3.04e-01 120 chr2L:18899693-18899813 5.76e-01 120 chr2R:8771052-8771172 4.61e-03 28_[+1(1.31e-05)]_84 chr2L:10544835-10544955 5.24e-01 120 chrX:2383232-2383352 4.22e-03 [+1(4.04e-05)]_90_[+1(1.31e-05)]_14 chr2R:14713566-14713686 7.08e-01 120 chr2L:8849984-8850104 9.17e-02 1_[+2(7.01e-05)]_111 chrX:2659587-2659707 6.18e-01 120 chr2R:8653915-8654035 1.18e-03 74_[+3(1.01e-05)]_38 chr3R:16216761-16216881 2.13e-03 7_[+5(1.80e-05)]_19_[+5(1.80e-05)]_\ 78 chr3L:11384029-11384149 9.52e-01 120 chr2L:4594945-4595065 6.43e-01 120 chr2L:10553795-10553915 7.80e-01 120 chrX:17509710-17509830 2.01e-01 120 chrX:4677568-4677688 7.25e-02 120 chr2L:18945934-18946054 7.67e-01 120 chr2L:20859112-20859232 1.51e-02 1_[+5(1.80e-05)]_111 chr3L:22134725-22134845 8.29e-02 120 chrX:6908257-6908377 1.88e-02 69_[+2(5.16e-05)]_43 chrX:825117-825237 4.55e-01 120 chr2R:18670330-18670450 2.17e-02 26_[+4(1.31e-05)]_86 chr3L:12482403-12482523 2.25e-01 86_[+3(5.42e-05)]_26 chr3R:26013662-26013782 7.46e-01 120 chr3R:21557090-21557210 1.42e-03 105_[+5(1.80e-05)]_7 chr2R:8091645-8091765 8.84e-01 120 chr2L:10499744-10499864 2.51e-04 27_[+4(9.00e-05)]_33_[+2(5.16e-05)]_\ [+2(5.16e-05)]_36 chr3R:21632652-21632772 4.78e-01 120 chrX:6999323-6999443 7.11e-01 120 chr3R:26013234-26013354 2.32e-01 120 chr2L:20881855-20881975 4.73e-03 54_[+4(9.00e-05)]_58 chr3L:7988580-7988700 1.86e-01 120 chr3R:8251706-8251826 1.78e-01 88_[+2(3.38e-05)]_24 chr3L:20404679-20404799 1.27e-02 120 chr2L:7577748-7577868 2.04e-02 89_[+3(2.15e-05)]_23 chr2R:8985547-8985667 6.95e-01 120 chr2R:22230078-22230198 8.63e-01 120 chr2R:15011314-15011434 8.63e-02 120 chr2R:11660583-11660703 9.47e-01 120 chr3L:13919869-13919989 2.50e-02 21_[+1(1.31e-05)]_91 chr2R:8245239-8245359 8.83e-01 120 chr2R:21888985-21889105 7.52e-04 39_[+4(2.56e-05)]_27_[+2(3.38e-05)]_\ 38 chrX:3741774-3741894 1.23e-02 47_[+3(3.26e-05)]_65 chr2L:10543222-10543342 6.77e-01 120 chr3L:20789406-20789526 2.83e-01 120 chr3R:11350999-11351119 5.12e-02 120 chrX:13089543-13089663 2.15e-01 120 chr2R:18293278-18293398 2.18e-01 120 chrX:3832354-3832474 3.25e-03 24_[+5(3.52e-05)]_88 chr2L:14308351-14308471 4.61e-01 120 chr3L:20367172-20367292 3.42e-01 120 chr3L:813822-813942 8.74e-01 120 chr3R:10520310-10520430 1.42e-01 120 chr3L:5952707-5952827 4.13e-02 7_[+5(1.80e-05)]_62_[+5(1.80e-05)]_\ 35 chr2R:13623002-13623122 4.28e-01 120 chrX:13358397-13358517 8.24e-01 120 chr2R:13375457-13375577 3.02e-02 3_[+4(6.35e-05)]_109 chr2L:121523-121643 1.15e-01 120 chr3L:10766907-10767027 1.79e-02 42_[+2(5.16e-05)]_[+2(5.16e-05)]_62 chr3L:1431495-1431615 2.54e-01 100_[+2(5.16e-05)]_[+2(5.16e-05)]_4 chr3R:8277903-8278023 8.72e-01 120 chr3L:13227638-13227758 1.70e-01 3_[+3(5.42e-05)]_109 chr2L:15327293-15327413 8.37e-01 120 chr3L:21706270-21706390 9.91e-01 120 chrX:5085684-5085804 5.93e-02 108_[+3(2.15e-05)]_4 chr3L:641488-641608 9.78e-01 120 chr3L:16767035-16767155 5.70e-01 120 chrX:2387610-2387730 7.46e-01 120 chrX:17481967-17482087 1.27e-01 120 chr2L:11045620-11045740 6.48e-02 120 chr2R:18667157-18667277 2.07e-03 27_[+3(5.42e-05)]_85 chr3L:15329729-15329849 3.62e-03 84_[+3(2.15e-05)]_8_[+1(5.41e-05)]_\ 12 chr2L:8411541-8411661 7.42e-02 27_[+2(5.16e-05)]_85 chrX:9644970-9645090 2.31e-03 [+4(2.56e-05)]_10_[+4(2.56e-05)]_94 chrX:19637936-19638056 2.13e-02 22_[+1(1.31e-05)]_[+1(1.31e-05)]_15_\ [+1(1.31e-05)]_59 chr3R:9027178-9027298 6.64e-02 61_[+5(8.83e-05)]_51 chr2R:9404595-9404715 7.85e-01 120 chr3L:4263670-4263790 7.33e-01 120 chr2R:9439846-9439966 1.27e-02 120 chrX:18634802-18634922 8.96e-01 120 chr3L:17962790-17962910 8.57e-01 120 chr3R:22780472-22780592 1.05e-01 103_[+2(3.38e-05)]_9 chr2R:21161489-21161609 8.77e-01 120 chrX:7977394-7977514 5.49e-01 120 chr3R:27437444-27437564 1.96e-02 78_[+5(1.80e-05)]_1_[+5(1.80e-05)]_\ 8_[+5(5.25e-05)]_9 chr2R:11091095-11091215 6.73e-01 120 chr2R:20600798-20600918 1.24e-01 92_[+2(5.16e-05)]_20 chr2R:12663127-12663247 1.57e-02 120 chr2L:9193891-9194011 4.83e-01 120 chr3R:19935644-19935764 8.99e-01 120 chr3L:20976552-20976672 1.81e-01 120 chr3R:5104293-5104413 3.64e-01 120 chr2L:6178559-6178679 1.21e-01 96_[+3(1.01e-05)]_16 chr2L:6252935-6253055 1.89e-01 120 chr2L:6553786-6553906 1.21e-01 120 chrX:2191980-2192100 5.20e-03 74_[+5(8.83e-05)]_13_[+3(6.66e-05)]_\ 17 chr3L:17974787-17974907 2.17e-04 99_[+5(1.80e-05)]_13 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************