******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/HLH54F.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:3950295-3950415 1.0000 120 chr3L:17009764-17009884 1.0000 120 chr2L:14619677-14619797 1.0000 120 chrX:8493631-8493751 1.0000 120 chr3R:25661692-25661812 1.0000 120 chr2L:4335263-4335383 1.0000 120 chrX:2708274-2708394 1.0000 120 chr3R:8784909-8785029 1.0000 120 chr3L:18748314-18748434 1.0000 120 chr3R:30200257-30200377 1.0000 120 chrX:8273857-8273977 1.0000 120 chr3R:17043288-17043408 1.0000 120 chr2L:1837833-1837953 1.0000 120 chrX:1477016-1477136 1.0000 120 chr3L:627889-628009 1.0000 120 chr2L:8894385-8894505 1.0000 120 chr2R:18811959-18812079 1.0000 120 chrX:13333082-13333202 1.0000 120 chr2R:23869598-23869718 1.0000 120 chr3R:12997630-12997750 1.0000 120 chr3L:3770995-3771115 1.0000 120 chr3R:22628068-22628188 1.0000 120 chrX:5897206-5897326 1.0000 120 chr3R:16655821-16655941 1.0000 120 chr3L:22871134-22871254 1.0000 120 chr2L:5278486-5278606 1.0000 120 chrX:14580507-14580627 1.0000 120 chr3R:7500622-7500742 1.0000 120 chr2L:937001-937121 1.0000 120 chr2R:22737918-22738038 1.0000 120 chr3L:94226-94346 1.0000 120 chr3L:11429834-11429954 1.0000 120 chr2L:3058873-3058993 1.0000 120 chr2L:2735094-2735214 1.0000 120 chr3R:18663637-18663757 1.0000 120 chr3L:3970552-3970672 1.0000 120 chr2L:11199137-11199257 1.0000 120 chr2L:16680034-16680154 1.0000 120 chr2L:11066133-11066253 1.0000 120 chr3R:18215451-18215571 1.0000 120 chr3L:3320158-3320278 1.0000 120 chr2L:9494838-9494958 1.0000 120 chr3R:15139397-15139517 1.0000 120 chr2L:19121095-19121215 1.0000 120 chrX:12611553-12611673 1.0000 120 chr2R:17161030-17161150 1.0000 120 chr2R:7077074-7077194 1.0000 120 chr3L:8604465-8604585 1.0000 120 chr3R:21161834-21161954 1.0000 120 chr3R:16704349-16704469 1.0000 120 chr3R:31636643-31636763 1.0000 120 chrX:13253183-13253303 1.0000 120 chr3L:8110319-8110439 1.0000 120 chrX:18494327-18494447 1.0000 120 chrX:3399500-3399620 1.0000 120 chr2L:7412311-7412431 1.0000 120 chr3L:10631051-10631171 1.0000 120 chr3R:23228754-23228874 1.0000 120 chr3R:25168299-25168419 1.0000 120 chrX:11854881-11855001 1.0000 120 chr3L:21196706-21196826 1.0000 120 chr3R:11244141-11244261 1.0000 120 chrX:5671787-5671907 1.0000 120 chr3R:14569641-14569761 1.0000 120 chrX:5689620-5689740 1.0000 120 chrX:19521943-19522063 1.0000 120 chr3R:26099389-26099509 1.0000 120 chr2L:1316565-1316685 1.0000 120 chr2R:6938672-6938792 1.0000 120 chrX:6759504-6759624 1.0000 120 chrX:14169213-14169333 1.0000 120 chrX:10587563-10587683 1.0000 120 chr3L:9972601-9972721 1.0000 120 chr3R:5861561-5861681 1.0000 120 chrX:11600977-11601097 1.0000 120 chr3R:17540167-17540287 1.0000 120 chr2R:7984300-7984420 1.0000 120 chr3L:22276748-22276868 1.0000 120 chr2L:7957076-7957196 1.0000 120 chr3L:20389145-20389265 1.0000 120 chrX:6179517-6179637 1.0000 120 chr3R:16355564-16355684 1.0000 120 chrX:15120214-15120334 1.0000 120 chr2R:16849564-16849684 1.0000 120 chr2L:20734270-20734390 1.0000 120 chrX:13676608-13676728 1.0000 120 chr2L:3713118-3713238 1.0000 120 chr3L:22277394-22277514 1.0000 120 chr3L:9838643-9838763 1.0000 120 chr2R:5128311-5128431 1.0000 120 chrX:4918746-4918866 1.0000 120 chr3R:8564043-8564163 1.0000 120 chr2L:3477382-3477502 1.0000 120 chr3R:21118943-21119063 1.0000 120 chr2R:17062649-17062769 1.0000 120 chr3L:8440923-8441043 1.0000 120 chrX:12611775-12611895 1.0000 120 chr2R:9544886-9545006 1.0000 120 chrX:11325297-11325417 1.0000 120 chr3R:15963830-15963950 1.0000 120 chrX:17330375-17330495 1.0000 120 chrX:8436886-8437006 1.0000 120 chr2L:16251941-16252061 1.0000 120 chrX:1880330-1880450 1.0000 120 chr2R:12173498-12173618 1.0000 120 chr3L:13929312-13929432 1.0000 120 chr2R:16202923-16203043 1.0000 120 chr2L:5907033-5907153 1.0000 120 chrX:11137638-11137758 1.0000 120 chr3L:12408923-12409043 1.0000 120 chr3R:15547915-15548035 1.0000 120 chr3R:28599609-28599729 1.0000 120 chr2R:23818387-23818507 1.0000 120 chr3R:20833125-20833245 1.0000 120 chr3L:14172708-14172828 1.0000 120 chr3R:27677193-27677313 1.0000 120 chr3L:9899148-9899268 1.0000 120 chr3R:14741486-14741606 1.0000 120 chr3R:26121898-26122018 1.0000 120 chrX:8233359-8233479 1.0000 120 chr3R:20735476-20735596 1.0000 120 chr3L:13015320-13015440 1.0000 120 chr2L:21658554-21658674 1.0000 120 chr2L:6649210-6649330 1.0000 120 chr2R:10066610-10066730 1.0000 120 chr3L:6189684-6189804 1.0000 120 chrX:4116977-4117097 1.0000 120 chr3R:7920375-7920495 1.0000 120 chrX:12595632-12595752 1.0000 120 chr3R:31054041-31054161 1.0000 120 chrX:15712495-15712615 1.0000 120 chr2L:7702599-7702719 1.0000 120 chr3R:9055196-9055316 1.0000 120 chr3L:18672346-18672466 1.0000 120 chr2L:14094784-14094904 1.0000 120 chr3R:30280473-30280593 1.0000 120 chr2R:14411711-14411831 1.0000 120 chr3R:27988953-27989073 1.0000 120 chrX:5285932-5286052 1.0000 120 chrX:2158974-2159094 1.0000 120 chr3L:13922360-13922480 1.0000 120 chr2R:6656337-6656457 1.0000 120 chr3R:15472748-15472868 1.0000 120 chr2L:14359157-14359277 1.0000 120 chr2L:11829392-11829512 1.0000 120 chr2L:6339712-6339832 1.0000 120 chrX:1859108-1859228 1.0000 120 chr2L:12467841-12467961 1.0000 120 chr3R:5686502-5686622 1.0000 120 chr3L:12803841-12803961 1.0000 120 chr2R:16571748-16571868 1.0000 120 chr2R:17590812-17590932 1.0000 120 chr2L:8488869-8488989 1.0000 120 chr2L:6047894-6048014 1.0000 120 chrX:6694990-6695110 1.0000 120 chr3L:12336426-12336546 1.0000 120 chr2L:19140961-19141081 1.0000 120 chr3R:26937690-26937810 1.0000 120 chrX:1380457-1380577 1.0000 120 chr2L:7027164-7027284 1.0000 120 chr3R:25027481-25027601 1.0000 120 chr2R:13999238-13999358 1.0000 120 chrX:10387817-10387937 1.0000 120 chr2L:20918890-20919010 1.0000 120 chr3L:15565935-15566055 1.0000 120 chr3R:5685745-5685865 1.0000 120 chr3R:5856360-5856480 1.0000 120 chr2L:1150689-1150809 1.0000 120 chr2L:20881500-20881620 1.0000 120 chr2R:24402762-24402882 1.0000 120 chrX:13391259-13391379 1.0000 120 chr2L:8554388-8554508 1.0000 120 chr2L:20715107-20715227 1.0000 120 chr3L:3896760-3896880 1.0000 120 chrX:8606309-8606429 1.0000 120 chr2L:18590784-18590904 1.0000 120 chr2L:18688805-18688925 1.0000 120 chr2R:21183223-21183343 1.0000 120 chr2R:23383451-23383571 1.0000 120 chr2R:6781812-6781932 1.0000 120 chr2R:24086516-24086636 1.0000 120 chrX:10086374-10086494 1.0000 120 chrX:15739107-15739227 1.0000 120 chr3L:10694047-10694167 1.0000 120 chr2R:23970159-23970279 1.0000 120 chr3R:18399073-18399193 1.0000 120 chr2L:20950780-20950900 1.0000 120 chr3L:8720164-8720284 1.0000 120 chr2R:8002323-8002443 1.0000 120 chrX:17176699-17176819 1.0000 120 chr2L:21310042-21310162 1.0000 120 chr3R:30195697-30195817 1.0000 120 chrX:6037327-6037447 1.0000 120 chrX:9193778-9193898 1.0000 120 chr2L:11203745-11203865 1.0000 120 chr3R:23028661-23028781 1.0000 120 chrX:1370170-1370290 1.0000 120 chr3L:15967955-15968075 1.0000 120 chr2L:4847300-4847420 1.0000 120 chrX:11451149-11451269 1.0000 120 chr3R:24945031-24945151 1.0000 120 chr3R:6457107-6457227 1.0000 120 chrX:15582969-15583089 1.0000 120 chr2R:7699153-7699273 1.0000 120 chr3R:13030650-13030770 1.0000 120 chr3R:27273620-27273740 1.0000 120 chr3L:3197613-3197733 1.0000 120 chr2L:15629915-15630035 1.0000 120 chr3R:21101755-21101875 1.0000 120 chr3L:4186816-4186936 1.0000 120 chr2L:5520127-5520247 1.0000 120 chr3R:21850228-21850348 1.0000 120 chrX:5420826-5420946 1.0000 120 chr3L:16165761-16165881 1.0000 120 chr2L:10856647-10856767 1.0000 120 chr3R:10882205-10882325 1.0000 120 chr2L:3042215-3042335 1.0000 120 chr2R:7916654-7916774 1.0000 120 chr3L:4379045-4379165 1.0000 120 chr2R:5122240-5122360 1.0000 120 chr3R:29039812-29039932 1.0000 120 chr3L:7861137-7861257 1.0000 120 chr2L:12002991-12003111 1.0000 120 chr2L:4459771-4459891 1.0000 120 chr2R:17564773-17564893 1.0000 120 chr3R:26566910-26567030 1.0000 120 chr2L:1980762-1980882 1.0000 120 chr2R:20601086-20601206 1.0000 120 chr2R:12633468-12633588 1.0000 120 chr4:43771-43891 1.0000 120 chr3L:16571495-16571615 1.0000 120 chr2R:23940192-23940312 1.0000 120 chr3R:18274545-18274665 1.0000 120 chr3L:1350578-1350698 1.0000 120 chr2L:15751098-15751218 1.0000 120 chr4:867024-867144 1.0000 120 chr3R:5588309-5588429 1.0000 120 chr2R:8914035-8914155 1.0000 120 chr2R:21060508-21060628 1.0000 120 chr3R:20592998-20593118 1.0000 120 chr2L:16703820-16703940 1.0000 120 chrX:19505711-19505831 1.0000 120 chr3R:25027680-25027800 1.0000 120 chrX:13334981-13335101 1.0000 120 chr3L:13486724-13486844 1.0000 120 chr3R:30058073-30058193 1.0000 120 chr3L:1352116-1352236 1.0000 120 chr3R:10696490-10696610 1.0000 120 chr3R:30305040-30305160 1.0000 120 chr3R:5613234-5613354 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_HLH54F/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/HLH54F.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.31 C 0.192 G 0.193 T 0.305 Background letter frequencies (from file dataset with add-one prior applied): A 0.31 C 0.192 G 0.193 T 0.305 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGTTGCC MEME-1 width = 8 sites = 14 llr = 159 E-value = 1.3e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :9::1:aa probability G a1a:2a:: matrix T :::a7::: bits 2.4 * * *** 2.1 * * *** 1.9 *** *** 1.7 **** *** Relative 1.4 **** *** Entropy 1.2 **** *** (16.4 bits) 1.0 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGTTGCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7916654-7916774 112 4.73e-06 GATACGAACC GCGTTGCC G chr2L:18688805-18688925 4 4.73e-06 CTG GCGTTGCC ACTTTTCGCC chrX:1380457-1380577 60 4.73e-06 CACTGGCTCG GCGTTGCC ACCTCGCGGG chr3L:12336426-12336546 6 4.73e-06 ACAAA GCGTTGCC ACATGGATAG chr2R:17590812-17590932 70 4.73e-06 ATACATCAGA GCGTTGCC AGAGTCCAGC chr2R:16202923-16203043 109 4.73e-06 GGGGATGGTC GCGTTGCC AACC chr2L:3713118-3713238 34 4.73e-06 TCAGCTGTTC GCGTTGCC AACCTGTGAG chr2L:20734270-20734390 17 4.73e-06 CACTGTAGCA GCGTTGCC ACCTAGTACA chr3L:21196706-21196826 70 4.73e-06 GTTTACTTAC GCGTTGCC AAACACCAGC chr4:867024-867144 2 7.73e-06 A GCGTGGCC GTCTTGCGAT chr2L:11829392-11829512 47 7.73e-06 CCATTGCGCA GCGTGGCC ACCTGGTCAC chr3L:8110319-8110439 42 7.73e-06 TGTGAAGCGC GCGTGGCC ACAGAGCTCG chrX:4116977-4117097 22 1.07e-05 GCGCAGCGTC GCGTCGCC TTTTCAAAGT chr3R:21101755-21101875 6 1.55e-05 CGCCA GGGTTGCC AGGTGAGCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7916654-7916774 4.7e-06 111_[+1]_1 chr2L:18688805-18688925 4.7e-06 3_[+1]_109 chrX:1380457-1380577 4.7e-06 59_[+1]_53 chr3L:12336426-12336546 4.7e-06 5_[+1]_107 chr2R:17590812-17590932 4.7e-06 69_[+1]_43 chr2R:16202923-16203043 4.7e-06 108_[+1]_4 chr2L:3713118-3713238 4.7e-06 33_[+1]_79 chr2L:20734270-20734390 4.7e-06 16_[+1]_96 chr3L:21196706-21196826 4.7e-06 69_[+1]_43 chr4:867024-867144 7.7e-06 1_[+1]_111 chr2L:11829392-11829512 7.7e-06 46_[+1]_66 chr3L:8110319-8110439 7.7e-06 41_[+1]_71 chrX:4116977-4117097 1.1e-05 21_[+1]_91 chr3R:21101755-21101875 1.5e-05 5_[+1]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGTTGCC width=8 seqs=14 chr2R:7916654-7916774 ( 112) GCGTTGCC 1 chr2L:18688805-18688925 ( 4) GCGTTGCC 1 chrX:1380457-1380577 ( 60) GCGTTGCC 1 chr3L:12336426-12336546 ( 6) GCGTTGCC 1 chr2R:17590812-17590932 ( 70) GCGTTGCC 1 chr2R:16202923-16203043 ( 109) GCGTTGCC 1 chr2L:3713118-3713238 ( 34) GCGTTGCC 1 chr2L:20734270-20734390 ( 17) GCGTTGCC 1 chr3L:21196706-21196826 ( 70) GCGTTGCC 1 chr4:867024-867144 ( 2) GCGTGGCC 1 chr2L:11829392-11829512 ( 47) GCGTGGCC 1 chr3L:8110319-8110439 ( 42) GCGTGGCC 1 chrX:4116977-4117097 ( 22) GCGTCGCC 1 chr3R:21101755-21101875 ( 6) GGGTTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2007 E= 1.3e-005 -1045 -1045 237 -1045 -1045 227 -143 -1045 -1045 -1045 237 -1045 -1045 -1045 -1045 171 -1045 -142 15 123 -1045 -1045 237 -1045 -1045 238 -1045 -1045 -1045 238 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.3e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.928571 0.071429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.071429 0.214286 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 regular expression -------------------------------------------------------------------------------- GCGT[TG]GCC -------------------------------------------------------------------------------- Time 7.11 secs. ******************************************************************************** ******************************************************************************** MOTIF ATCGATAD MEME-2 width = 8 sites = 27 llr = 254 E-value = 1.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATCGATAD MEME-2 Description -------------------------------------------------------------------------------- Simplified A a:::a:a3 pos.-specific C ::a::::: probability G :::a:::5 matrix T :a:::a:3 bits 2.4 ** 2.1 ** 1.9 ** 1.7 ****** Relative 1.4 ******* Entropy 1.2 ******* (13.6 bits) 1.0 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATCGATAG consensus A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAD MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5613234-5613354 47 1.98e-05 TTTACTTTTA ATCGATAG ACAAAAACAG chrX:5420826-5420946 72 1.98e-05 GCCCACGCTC ATCGATAG GTATCGATTG chr2L:20918890-20919010 74 1.98e-05 AGCTCTTGCA ATCGATAG CTCGATAAGT chrX:6694990-6695110 36 1.98e-05 GTATCGATAC ATCGATAG TTGAGCAGGC chrX:15712495-15712615 89 1.98e-05 ACTTAACCAT ATCGATAG GCAAAGCCGA chr3R:7920375-7920495 54 1.98e-05 TTTCTAAAAT ATCGATAG TTTGTGGCAT chr3L:13015320-13015440 37 1.98e-05 GTCAGCAGCT ATCGATAG TTGTTTCGTG chr3R:14741486-14741606 92 1.98e-05 TACCCTATAC ATCGATAG TATCGCATAA chrX:11325297-11325417 48 1.98e-05 AACACTCACT ATCGATAG GCCGTGTCTA chrX:6759504-6759624 24 1.98e-05 CTTTAGAATT ATCGATAG TCCGTTGTGC chr3R:11244141-11244261 21 1.98e-05 TATCAAGGGC ATCGATAG TTTGGCTGCT chr3R:25661692-25661812 58 1.98e-05 TGGCATTGCT ATCGATAG CTTGAAAAAC chr3R:10696490-10696610 13 8.30e-05 ATTCAAGCTT ATCGATAA ATAAAATATT chr2R:12633468-12633588 95 8.30e-05 ACCGGCGCCC ATCGATAT CGTAGATTCA chr2R:6781812-6781932 42 8.30e-05 GTAAATACAC ATCGATAT GCGGAAAATG chr2R:23383451-23383571 33 8.30e-05 TGCGATTTTA ATCGATAA CGCTTTATAC chr2R:21183223-21183343 49 8.30e-05 GTTTTGATGC ATCGATAA CAACAAAAAT chrX:8606309-8606429 46 8.30e-05 CGCTCGATAG ATCGATAT AATGTGCATC chr2R:24402762-24402882 57 8.30e-05 GCTGTAGAAA ATCGATAT CAATTCACTA chrX:2158974-2159094 19 8.30e-05 TCATGAAACT ATCGATAT GCCGTAGACG chr2R:10066610-10066730 7 8.30e-05 AAAGAA ATCGATAA ATGTATATTT chr3R:20735476-20735596 87 8.30e-05 AGGAATTCTT ATCGATAT GTGGCGCTGC chr3R:27677193-27677313 11 8.30e-05 CCAACGGCTT ATCGATAA GTACCGGCTA chrX:11854881-11855001 83 8.30e-05 TAAGCAATGT ATCGATAT AGCCCACATC chrX:14580507-14580627 45 8.30e-05 TTGCTGGCCC ATCGATAA GAAGCGGTTA chrX:1477016-1477136 22 8.30e-05 GCGCAGAGCT ATCGATAA GTATCGCGAG chr2L:1980762-1980882 8 9.53e-05 TCGAACT ATCGATGG GCGATAGGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAD MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5613234-5613354 2e-05 46_[+2]_66 chrX:5420826-5420946 2e-05 71_[+2]_41 chr2L:20918890-20919010 2e-05 73_[+2]_39 chrX:6694990-6695110 2e-05 35_[+2]_77 chrX:15712495-15712615 2e-05 88_[+2]_24 chr3R:7920375-7920495 2e-05 53_[+2]_59 chr3L:13015320-13015440 2e-05 36_[+2]_76 chr3R:14741486-14741606 2e-05 91_[+2]_21 chrX:11325297-11325417 2e-05 47_[+2]_65 chrX:6759504-6759624 2e-05 23_[+2]_89 chr3R:11244141-11244261 2e-05 20_[+2]_92 chr3R:25661692-25661812 2e-05 57_[+2]_55 chr3R:10696490-10696610 8.3e-05 12_[+2]_100 chr2R:12633468-12633588 8.3e-05 94_[+2]_18 chr2R:6781812-6781932 8.3e-05 41_[+2]_71 chr2R:23383451-23383571 8.3e-05 32_[+2]_80 chr2R:21183223-21183343 8.3e-05 48_[+2]_64 chrX:8606309-8606429 8.3e-05 45_[+2]_67 chr2R:24402762-24402882 8.3e-05 56_[+2]_56 chrX:2158974-2159094 8.3e-05 18_[+2]_94 chr2R:10066610-10066730 8.3e-05 6_[+2]_106 chr3R:20735476-20735596 8.3e-05 86_[+2]_26 chr3R:27677193-27677313 8.3e-05 10_[+2]_102 chrX:11854881-11855001 8.3e-05 82_[+2]_30 chrX:14580507-14580627 8.3e-05 44_[+2]_68 chrX:1477016-1477136 8.3e-05 21_[+2]_91 chr2L:1980762-1980882 9.5e-05 7_[+2]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAD MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATCGATAD width=8 seqs=27 chr3R:5613234-5613354 ( 47) ATCGATAG 1 chrX:5420826-5420946 ( 72) ATCGATAG 1 chr2L:20918890-20919010 ( 74) ATCGATAG 1 chrX:6694990-6695110 ( 36) ATCGATAG 1 chrX:15712495-15712615 ( 89) ATCGATAG 1 chr3R:7920375-7920495 ( 54) ATCGATAG 1 chr3L:13015320-13015440 ( 37) ATCGATAG 1 chr3R:14741486-14741606 ( 92) ATCGATAG 1 chrX:11325297-11325417 ( 48) ATCGATAG 1 chrX:6759504-6759624 ( 24) ATCGATAG 1 chr3R:11244141-11244261 ( 21) ATCGATAG 1 chr3R:25661692-25661812 ( 58) ATCGATAG 1 chr3R:10696490-10696610 ( 13) ATCGATAA 1 chr2R:12633468-12633588 ( 95) ATCGATAT 1 chr2R:6781812-6781932 ( 42) ATCGATAT 1 chr2R:23383451-23383571 ( 33) ATCGATAA 1 chr2R:21183223-21183343 ( 49) ATCGATAA 1 chrX:8606309-8606429 ( 46) ATCGATAT 1 chr2R:24402762-24402882 ( 57) ATCGATAT 1 chrX:2158974-2159094 ( 19) ATCGATAT 1 chr2R:10066610-10066730 ( 7) ATCGATAA 1 chr3R:20735476-20735596 ( 87) ATCGATAT 1 chr3R:27677193-27677313 ( 11) ATCGATAA 1 chrX:11854881-11855001 ( 83) ATCGATAT 1 chrX:14580507-14580627 ( 45) ATCGATAA 1 chrX:1477016-1477136 ( 22) ATCGATAA 1 chr2L:1980762-1980882 ( 8) ATCGATGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAD MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5992 E= 1.2e-003 169 -1140 -1140 -1140 -1140 -1140 -1140 171 -1140 238 -1140 -1140 -1140 -1140 237 -1140 169 -1140 -1140 -1140 -1140 -1140 -1140 171 164 -1140 -238 -1140 -26 -1140 132 -24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAD MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.2e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.962963 0.000000 0.037037 0.000000 0.259259 0.000000 0.481481 0.259259 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAD MEME-2 regular expression -------------------------------------------------------------------------------- ATCGATA[GAT] -------------------------------------------------------------------------------- Time 13.10 secs. ******************************************************************************** ******************************************************************************** MOTIF CAACACTG MEME-3 width = 8 sites = 21 llr = 209 E-value = 3.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAACACTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a5:7::: pos.-specific C a::a3a:: probability G ::2::::a matrix T ::2:::a: bits 2.4 * * * * 2.1 * * * * 1.9 * * * * 1.7 ** * *** Relative 1.4 ** * *** Entropy 1.2 ** * *** (14.3 bits) 1.0 ** ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAACACTG consensus G C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:29039812-29039932 67 1.24e-05 GTATGTTTAC CAACACTG CGTTCGTTAG chr3L:4186816-4186936 104 1.24e-05 GAATCACTTT CAACACTG GTCAACAGT chr3L:3896760-3896880 78 1.24e-05 TGGCAATTTA CAACACTG AAACCGGGCT chr3R:5685745-5685865 45 1.24e-05 CGTCCCTTTG CAACACTG CTTCCCAGTG chrX:1380457-1380577 41 1.24e-05 CAGCGCTGCA CAACACTG CCACTGGCTC chr2R:6656337-6656457 56 1.24e-05 CGCTGTTGTC CAACACTG TTTGCTCAAG chr2L:14094784-14094904 77 1.24e-05 TCGTGCTAGC CAACACTG ATATCAGTGC chr3L:9899148-9899268 77 1.24e-05 ATCTATTGGC CAACACTG GCAACCCAAG chrX:13334981-13335101 60 2.01e-05 ACGAGTTTTG CAGCACTG AACTCGAGGG chr2R:23818387-23818507 82 2.01e-05 AGCCGACTTG CAGCACTG GCCTTTGGAA chr2L:5907033-5907153 15 2.01e-05 ATTCAAAATG CAGCACTG GCGTTTGGTC chr2L:20734270-20734390 4 2.01e-05 CGT CAGCACTG TAGCAGCGTT chrX:19505711-19505831 84 2.78e-05 GCTGAGCTGG CAACCCTG ATGCCATCGA chr3L:18672346-18672466 97 2.78e-05 TGCGATCCGG CAACCCTG TGCTCTAGAA chr3L:8110319-8110439 61 2.78e-05 CAGAGCTCGG CAACCCTG CAGCCGTGCG chr3R:6457107-6457227 42 3.26e-05 CGATGCTATG CAGCCCTG GTAAGGAAAA chr2L:4459771-4459891 75 4.48e-05 GCTAACTGGA CATCACTG CCGCAAGTGG chr2R:16571748-16571868 86 4.48e-05 AAAAGAGTGG CATCACTG ACAAGGTGTG chr3R:17043288-17043408 69 4.48e-05 TTTTTTCTAA CATCACTG TAGCAAAATG chrX:19521943-19522063 110 5.24e-05 TGCCGTGTGG CATCCCTG TAC chr3R:25661692-25661812 87 5.24e-05 CCTGTTTGGC CATCCCTG GTTGGCTGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29039812-29039932 1.2e-05 66_[+3]_46 chr3L:4186816-4186936 1.2e-05 103_[+3]_9 chr3L:3896760-3896880 1.2e-05 77_[+3]_35 chr3R:5685745-5685865 1.2e-05 44_[+3]_68 chrX:1380457-1380577 1.2e-05 40_[+3]_72 chr2R:6656337-6656457 1.2e-05 55_[+3]_57 chr2L:14094784-14094904 1.2e-05 76_[+3]_36 chr3L:9899148-9899268 1.2e-05 76_[+3]_36 chrX:13334981-13335101 2e-05 59_[+3]_53 chr2R:23818387-23818507 2e-05 81_[+3]_31 chr2L:5907033-5907153 2e-05 14_[+3]_98 chr2L:20734270-20734390 2e-05 3_[+3]_109 chrX:19505711-19505831 2.8e-05 83_[+3]_29 chr3L:18672346-18672466 2.8e-05 96_[+3]_16 chr3L:8110319-8110439 2.8e-05 60_[+3]_52 chr3R:6457107-6457227 3.3e-05 41_[+3]_71 chr2L:4459771-4459891 4.5e-05 74_[+3]_38 chr2R:16571748-16571868 4.5e-05 85_[+3]_27 chr3R:17043288-17043408 4.5e-05 68_[+3]_44 chrX:19521943-19522063 5.2e-05 109_[+3]_3 chr3R:25661692-25661812 5.2e-05 86_[+3]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAACACTG width=8 seqs=21 chr3R:29039812-29039932 ( 67) CAACACTG 1 chr3L:4186816-4186936 ( 104) CAACACTG 1 chr3L:3896760-3896880 ( 78) CAACACTG 1 chr3R:5685745-5685865 ( 45) CAACACTG 1 chrX:1380457-1380577 ( 41) CAACACTG 1 chr2R:6656337-6656457 ( 56) CAACACTG 1 chr2L:14094784-14094904 ( 77) CAACACTG 1 chr3L:9899148-9899268 ( 77) CAACACTG 1 chrX:13334981-13335101 ( 60) CAGCACTG 1 chr2R:23818387-23818507 ( 82) CAGCACTG 1 chr2L:5907033-5907153 ( 15) CAGCACTG 1 chr2L:20734270-20734390 ( 4) CAGCACTG 1 chrX:19505711-19505831 ( 84) CAACCCTG 1 chr3L:18672346-18672466 ( 97) CAACCCTG 1 chr3L:8110319-8110439 ( 61) CAACCCTG 1 chr3R:6457107-6457227 ( 42) CAGCCCTG 1 chr2L:4459771-4459891 ( 75) CATCACTG 1 chr2R:16571748-16571868 ( 86) CATCACTG 1 chr3R:17043288-17043408 ( 69) CATCACTG 1 chrX:19521943-19522063 ( 110) CATCCCTG 1 chr3R:25661692-25661812 ( 87) CATCCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6976 E= 3.3e-003 -1104 238 -1104 -1104 169 -1104 -1104 -1104 76 -1104 30 -36 -1104 238 -1104 -1104 120 57 -1104 -1104 -1104 238 -1104 -1104 -1104 -1104 -1104 171 -1104 -1104 237 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 3.3e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.523810 0.000000 0.238095 0.238095 0.000000 1.000000 0.000000 0.000000 0.714286 0.285714 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-3 regular expression -------------------------------------------------------------------------------- CA[AGT]C[AC]CTG -------------------------------------------------------------------------------- Time 19.05 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCTGCM MEME-4 width = 8 sites = 12 llr = 130 E-value = 3.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCTGCM MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::3 pos.-specific C ::19::87 probability G aa91:a:: matrix T ::::a:2: bits 2.4 ** * 2.1 ** * 1.9 **** * 1.7 ******* Relative 1.4 ******* Entropy 1.2 ******** (15.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGCTGCC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGCM MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5613234-5613354 70 3.00e-06 AACAGTTATT GGGCTGCC ATCTGGGGCG chrX:5420826-5420946 57 3.00e-06 TGCACAAACA GGGCTGCC CACGCTCATC chr3L:3896760-3896880 91 3.00e-06 CACTGAAACC GGGCTGCC AGGCTACCGA chr2L:20734270-20734390 42 3.00e-06 ACAGCTGAGA GGGCTGCC AACTGGCTGA chrX:13334981-13335101 75 7.83e-06 CTGAACTCGA GGGCTGCA ATTTGCCCGC chr2R:6656337-6656457 74 7.83e-06 TTTGCTCAAG GGGCTGCA TCACATGCAA chr3L:22276748-22276868 77 7.83e-06 GTTGGGAACG GGGCTGCA AAATCAATAA chr3R:18215451-18215571 11 7.83e-06 CGTAAGACCA GGGCTGCA ACTACGAAAT chr2R:8914035-8914155 83 1.26e-05 TCGGTGTTCA GGGCTGTC AGGTGTCAAT chrX:11325297-11325417 9 1.26e-05 TTCCACAT GGGCTGTC CACAGCATCA chr3R:7920375-7920495 12 1.86e-05 TAAACTATTT GGCCTGCC ACACGACTCG chrX:8273857-8273977 52 1.86e-05 GGGGGTGGAC GGGGTGCC AACCGAGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGCM MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5613234-5613354 3e-06 69_[+4]_43 chrX:5420826-5420946 3e-06 56_[+4]_56 chr3L:3896760-3896880 3e-06 90_[+4]_22 chr2L:20734270-20734390 3e-06 41_[+4]_71 chrX:13334981-13335101 7.8e-06 74_[+4]_38 chr2R:6656337-6656457 7.8e-06 73_[+4]_39 chr3L:22276748-22276868 7.8e-06 76_[+4]_36 chr3R:18215451-18215571 7.8e-06 10_[+4]_102 chr2R:8914035-8914155 1.3e-05 82_[+4]_30 chrX:11325297-11325417 1.3e-05 8_[+4]_104 chr3R:7920375-7920495 1.9e-05 11_[+4]_101 chrX:8273857-8273977 1.9e-05 51_[+4]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGCM MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCTGCM width=8 seqs=12 chr3R:5613234-5613354 ( 70) GGGCTGCC 1 chrX:5420826-5420946 ( 57) GGGCTGCC 1 chr3L:3896760-3896880 ( 91) GGGCTGCC 1 chr2L:20734270-20734390 ( 42) GGGCTGCC 1 chrX:13334981-13335101 ( 75) GGGCTGCA 1 chr2R:6656337-6656457 ( 74) GGGCTGCA 1 chr3L:22276748-22276868 ( 77) GGGCTGCA 1 chr3R:18215451-18215571 ( 11) GGGCTGCA 1 chr2R:8914035-8914155 ( 83) GGGCTGTC 1 chrX:11325297-11325417 ( 9) GGGCTGTC 1 chr3R:7920375-7920495 ( 12) GGCCTGCC 1 chrX:8273857-8273977 ( 52) GGGGTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGCM MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3003 E= 3.4e+000 -1023 -1023 237 -1023 -1023 -1023 237 -1023 -1023 -120 225 -1023 -1023 225 -121 -1023 -1023 -1023 -1023 171 -1023 -1023 237 -1023 -1023 212 -1023 -87 11 180 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGCM MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 3.4e+000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.333333 0.666667 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGCM MEME-4 regular expression -------------------------------------------------------------------------------- GGGCTGC[CA] -------------------------------------------------------------------------------- Time 24.94 secs. ******************************************************************************** ******************************************************************************** MOTIF AWCAGCTG MEME-5 width = 8 sites = 18 llr = 180 E-value = 6.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A a3:7::1: pos.-specific C ::a::a:: probability G :::3a::a matrix T :7::::9: bits 2.4 * ** * 2.1 * ** * 1.9 * ** * 1.7 * * ** * Relative 1.4 * * **** Entropy 1.2 * * **** (14.4 bits) 1.0 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATCAGCTG consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:11203745-11203865 77 1.23e-05 GTGAACTTCT ATCAGCTG CTCAATAGTT chr3R:5685745-5685865 95 1.23e-05 GCACCTGGCA ATCAGCTG TTCCAAACGA chrX:1880330-1880450 88 1.23e-05 GTCGACATGT ATCAGCTG GCTGGCTACT chr3L:9838643-9838763 15 1.23e-05 GATGCCGCCA ATCAGCTG TCTCCCGATA chr2L:3713118-3713238 23 1.23e-05 CACCCTAAAA ATCAGCTG TTCGCGTTGC chr3R:11244141-11244261 79 1.23e-05 GAAAGCCGCT ATCAGCTG TTTGCAAGCT chr3L:21196706-21196826 2 1.23e-05 T ATCAGCTG ATCGGGTTTA chrX:19505711-19505831 70 1.99e-05 TCCCGCTATA ATCGGCTG AGCTGGCAAC chr4:43771-43891 10 1.99e-05 ATTATTAGT ATCGGCTG TATCAGCCTA chr2L:11829392-11829512 66 1.99e-05 CCTGGTCACG ATCGGCTG GCCAGTGTTG chr2L:9494838-9494958 23 1.99e-05 AAGAGTTGCT ATCGGCTG CTAATTGTAC chr3L:10694047-10694167 27 3.24e-05 TTTATTTTGT AACAGCTG TTGCCCAGTG chr2R:24402762-24402882 43 3.24e-05 AGGTTTTCTT AACAGCTG TAGAAAATCG chr2L:8488869-8488989 104 3.24e-05 CATGCAAACA AACAGCTG ACAGTATTT chr2L:5907033-5907153 67 3.24e-05 GGAAAATGTG AACAGCTG ATACCACTGG chrX:12611775-12611895 94 3.24e-05 ATGTCGCTGA AACAGCTG TTCGCTGTAC chr3L:22276748-22276868 53 4.02e-05 CATAAGGATC AACGGCTG ACTCAAGTTG chr2R:9544886-9545006 44 5.26e-05 CCACCATTTC ATCAGCAG TACATGTGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:11203745-11203865 1.2e-05 76_[+5]_36 chr3R:5685745-5685865 1.2e-05 94_[+5]_18 chrX:1880330-1880450 1.2e-05 87_[+5]_25 chr3L:9838643-9838763 1.2e-05 14_[+5]_98 chr2L:3713118-3713238 1.2e-05 22_[+5]_90 chr3R:11244141-11244261 1.2e-05 78_[+5]_34 chr3L:21196706-21196826 1.2e-05 1_[+5]_111 chrX:19505711-19505831 2e-05 69_[+5]_43 chr4:43771-43891 2e-05 9_[+5]_103 chr2L:11829392-11829512 2e-05 65_[+5]_47 chr2L:9494838-9494958 2e-05 22_[+5]_90 chr3L:10694047-10694167 3.2e-05 26_[+5]_86 chr2R:24402762-24402882 3.2e-05 42_[+5]_70 chr2L:8488869-8488989 3.2e-05 103_[+5]_9 chr2L:5907033-5907153 3.2e-05 66_[+5]_46 chrX:12611775-12611895 3.2e-05 93_[+5]_19 chr3L:22276748-22276868 4e-05 52_[+5]_60 chr2R:9544886-9545006 5.3e-05 43_[+5]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWCAGCTG width=8 seqs=18 chr2L:11203745-11203865 ( 77) ATCAGCTG 1 chr3R:5685745-5685865 ( 95) ATCAGCTG 1 chrX:1880330-1880450 ( 88) ATCAGCTG 1 chr3L:9838643-9838763 ( 15) ATCAGCTG 1 chr2L:3713118-3713238 ( 23) ATCAGCTG 1 chr3R:11244141-11244261 ( 79) ATCAGCTG 1 chr3L:21196706-21196826 ( 2) ATCAGCTG 1 chrX:19505711-19505831 ( 70) ATCGGCTG 1 chr4:43771-43891 ( 10) ATCGGCTG 1 chr2L:11829392-11829512 ( 66) ATCGGCTG 1 chr2L:9494838-9494958 ( 23) ATCGGCTG 1 chr3L:10694047-10694167 ( 27) AACAGCTG 1 chr2R:24402762-24402882 ( 43) AACAGCTG 1 chr2L:8488869-8488989 ( 104) AACAGCTG 1 chr2L:5907033-5907153 ( 67) AACAGCTG 1 chrX:12611775-12611895 ( 94) AACAGCTG 1 chr3L:22276748-22276868 ( 53) AACGGCTG 1 chr2R:9544886-9545006 ( 44) ATCAGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.91657 E= 6.3e+000 169 -1081 -1081 -1081 11 -1081 -1081 113 -1081 238 -1081 -1081 122 -1081 52 -1081 -1081 -1081 237 -1081 -1081 238 -1081 -1081 -248 -1081 -1081 163 -1081 -1081 237 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 6.3e+000 1.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.666667 0.000000 1.000000 0.000000 0.000000 0.722222 0.000000 0.277778 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.055556 0.000000 0.000000 0.944444 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-5 regular expression -------------------------------------------------------------------------------- A[TA]C[AG]GCTG -------------------------------------------------------------------------------- Time 30.77 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3950295-3950415 4.41e-01 120 chr3L:17009764-17009884 3.64e-01 120 chr2L:14619677-14619797 6.22e-01 120 chrX:8493631-8493751 9.96e-01 120 chr3R:25661692-25661812 3.55e-04 57_[+2(1.98e-05)]_21_[+3(5.24e-05)]_\ 26 chr2L:4335263-4335383 9.69e-01 120 chrX:2708274-2708394 2.43e-01 120 chr3R:8784909-8785029 5.00e-01 120 chr3L:18748314-18748434 5.96e-01 120 chr3R:30200257-30200377 8.15e-01 120 chrX:8273857-8273977 5.51e-03 51_[+4(1.86e-05)]_61 chr3R:17043288-17043408 3.02e-01 68_[+3(4.48e-05)]_44 chr2L:1837833-1837953 7.68e-01 120 chrX:1477016-1477136 5.33e-03 21_[+2(8.30e-05)]_91 chr3L:627889-628009 5.43e-01 120 chr2L:8894385-8894505 2.24e-01 120 chr2R:18811959-18812079 7.53e-01 120 chrX:13333082-13333202 3.04e-01 120 chr2R:23869598-23869718 2.31e-02 120 chr3R:12997630-12997750 9.97e-01 120 chr3L:3770995-3771115 1.37e-01 120 chr3R:22628068-22628188 2.37e-01 120 chrX:5897206-5897326 8.38e-01 120 chr3R:16655821-16655941 9.83e-01 120 chr3L:22871134-22871254 1.16e-01 120 chr2L:5278486-5278606 2.80e-01 120 chrX:14580507-14580627 2.34e-02 44_[+2(8.30e-05)]_68 chr3R:7500622-7500742 8.44e-01 120 chr2L:937001-937121 7.58e-01 120 chr2R:22737918-22738038 9.48e-01 120 chr3L:94226-94346 4.04e-01 120 chr3L:11429834-11429954 9.75e-01 120 chr2L:3058873-3058993 1.15e-01 120 chr2L:2735094-2735214 3.38e-01 120 chr3R:18663637-18663757 5.81e-01 120 chr3L:3970552-3970672 6.24e-01 120 chr2L:11199137-11199257 5.52e-01 120 chr2L:16680034-16680154 4.18e-01 120 chr2L:11066133-11066253 2.25e-01 120 chr3R:18215451-18215571 1.60e-02 10_[+4(7.83e-06)]_102 chr3L:3320158-3320278 1.16e-01 120 chr2L:9494838-9494958 2.54e-02 22_[+5(1.99e-05)]_90 chr3R:15139397-15139517 1.22e-01 120 chr2L:19121095-19121215 5.30e-01 120 chrX:12611553-12611673 5.60e-02 120 chr2R:17161030-17161150 6.54e-01 120 chr2R:7077074-7077194 9.43e-01 120 chr3L:8604465-8604585 7.69e-01 120 chr3R:21161834-21161954 2.90e-01 120 chr3R:16704349-16704469 2.24e-01 120 chr3R:31636643-31636763 9.96e-01 120 chrX:13253183-13253303 7.09e-01 120 chr3L:8110319-8110439 5.51e-04 41_[+1(7.73e-06)]_11_[+3(2.78e-05)]_\ 52 chrX:18494327-18494447 8.15e-01 120 chrX:3399500-3399620 8.68e-01 120 chr2L:7412311-7412431 9.91e-02 120 chr3L:10631051-10631171 2.13e-01 120 chr3R:23228754-23228874 3.65e-02 120 chr3R:25168299-25168419 9.34e-01 120 chrX:11854881-11855001 3.40e-01 82_[+2(8.30e-05)]_30 chr3L:21196706-21196826 1.11e-04 1_[+5(1.23e-05)]_35_[+1(5.22e-05)]_\ 17_[+1(4.73e-06)]_43 chr3R:11244141-11244261 2.13e-04 20_[+2(1.98e-05)]_50_[+5(1.23e-05)]_\ 34 chrX:5671787-5671907 3.71e-03 38_[+5(7.31e-05)]_74 chr3R:14569641-14569761 7.58e-02 120 chrX:5689620-5689740 9.58e-01 120 chrX:19521943-19522063 4.01e-04 109_[+3(5.24e-05)]_3 chr3R:26099389-26099509 1.18e-01 120 chr2L:1316565-1316685 7.12e-01 120 chr2R:6938672-6938792 7.22e-02 120 chrX:6759504-6759624 1.44e-01 23_[+2(1.98e-05)]_89 chrX:14169213-14169333 9.86e-01 120 chrX:10587563-10587683 5.51e-01 120 chr3L:9972601-9972721 7.49e-01 120 chr3R:5861561-5861681 1.11e-01 120 chrX:11600977-11601097 2.67e-01 120 chr3R:17540167-17540287 5.66e-01 120 chr2R:7984300-7984420 6.68e-01 120 chr3L:22276748-22276868 4.46e-04 52_[+5(4.02e-05)]_16_[+4(7.83e-06)]_\ 36 chr2L:7957076-7957196 1.10e-01 [+1(5.22e-05)]_112 chr3L:20389145-20389265 3.81e-01 120 chrX:6179517-6179637 9.53e-01 120 chr3R:16355564-16355684 2.04e-01 120 chrX:15120214-15120334 7.64e-01 120 chr2R:16849564-16849684 6.15e-01 120 chr2L:20734270-20734390 3.73e-07 3_[+3(2.01e-05)]_5_[+1(4.73e-06)]_\ 17_[+4(3.00e-06)]_71 chrX:13676608-13676728 9.99e-01 120 chr2L:3713118-3713238 2.35e-04 22_[+5(1.23e-05)]_3_[+1(4.73e-06)]_\ 79 chr3L:22277394-22277514 3.08e-01 120 chr3L:9838643-9838763 9.24e-03 14_[+5(1.23e-05)]_98 chr2R:5128311-5128431 2.51e-01 120 chrX:4918746-4918866 6.64e-03 69_[+3(9.72e-05)]_3_[+5(8.10e-05)]_\ 32 chr3R:8564043-8564163 1.22e-01 120 chr2L:3477382-3477502 8.29e-01 120 chr3R:21118943-21119063 6.59e-01 120 chr2R:17062649-17062769 6.89e-02 120 chr3L:8440923-8441043 9.59e-01 120 chrX:12611775-12611895 1.76e-02 93_[+5(3.24e-05)]_19 chr2R:9544886-9545006 1.21e-01 43_[+5(5.26e-05)]_69 chrX:11325297-11325417 1.79e-04 8_[+4(1.26e-05)]_31_[+2(1.98e-05)]_\ 65 chr3R:15963830-15963950 1.21e-02 120 chrX:17330375-17330495 1.00e+00 120 chrX:8436886-8437006 9.42e-01 120 chr2L:16251941-16252061 7.37e-01 120 chrX:1880330-1880450 3.87e-02 87_[+5(1.23e-05)]_25 chr2R:12173498-12173618 1.00e-01 61_[+3(8.00e-05)]_51 chr3L:13929312-13929432 2.47e-01 120 chr2R:16202923-16203043 3.09e-03 108_[+1(4.73e-06)]_4 chr2L:5907033-5907153 1.07e-03 14_[+3(2.01e-05)]_44_[+5(3.24e-05)]_\ 46 chrX:11137638-11137758 9.82e-01 120 chr3L:12408923-12409043 8.07e-01 120 chr3R:15547915-15548035 2.57e-01 120 chr3R:28599609-28599729 7.82e-01 120 chr2R:23818387-23818507 3.56e-02 81_[+3(2.01e-05)]_31 chr3R:20833125-20833245 1.29e-01 120 chr3L:14172708-14172828 6.94e-01 120 chr3R:27677193-27677313 8.48e-02 10_[+2(8.30e-05)]_102 chr3L:9899148-9899268 2.38e-04 76_[+3(1.24e-05)]_36 chr3R:14741486-14741606 1.59e-02 91_[+2(1.98e-05)]_21 chr3R:26121898-26122018 8.06e-01 120 chrX:8233359-8233479 6.60e-01 120 chr3R:20735476-20735596 7.01e-03 86_[+2(8.30e-05)]_26 chr3L:13015320-13015440 1.75e-02 36_[+2(1.98e-05)]_76 chr2L:21658554-21658674 3.18e-01 120 chr2L:6649210-6649330 9.77e-01 120 chr2R:10066610-10066730 2.26e-01 6_[+2(8.30e-05)]_106 chr3L:6189684-6189804 3.32e-01 120 chrX:4116977-4117097 3.55e-03 21_[+1(1.07e-05)]_91 chr3R:7920375-7920495 2.49e-04 11_[+4(1.86e-05)]_34_[+2(1.98e-05)]_\ 59 chrX:12595632-12595752 9.82e-02 120 chr3R:31054041-31054161 7.35e-01 120 chrX:15712495-15712615 1.21e-01 88_[+2(1.98e-05)]_24 chr2L:7702599-7702719 8.81e-01 120 chr3R:9055196-9055316 8.83e-01 120 chr3L:18672346-18672466 6.69e-02 96_[+3(2.78e-05)]_16 chr2L:14094784-14094904 3.28e-02 76_[+3(1.24e-05)]_36 chr3R:30280473-30280593 4.05e-01 120 chr2R:14411711-14411831 5.56e-01 120 chr3R:27988953-27989073 4.82e-01 120 chrX:5285932-5286052 8.98e-01 120 chrX:2158974-2159094 5.19e-02 18_[+2(8.30e-05)]_94 chr3L:13922360-13922480 6.12e-01 120 chr2R:6656337-6656457 1.31e-04 55_[+3(1.24e-05)]_10_[+4(7.83e-06)]_\ 39 chr3R:15472748-15472868 7.19e-01 120 chr2L:14359157-14359277 2.43e-01 120 chr2L:11829392-11829512 3.69e-04 46_[+1(7.73e-06)]_11_[+5(1.99e-05)]_\ 47 chr2L:6339712-6339832 2.21e-01 120 chrX:1859108-1859228 4.44e-02 120 chr2L:12467841-12467961 6.10e-01 120 chr3R:5686502-5686622 8.31e-01 120 chr3L:12803841-12803961 9.77e-01 120 chr2R:16571748-16571868 1.09e-02 85_[+3(4.48e-05)]_27 chr2R:17590812-17590932 3.88e-03 69_[+1(4.73e-06)]_43 chr2L:8488869-8488989 5.48e-02 103_[+5(3.24e-05)]_9 chr2L:6047894-6048014 4.34e-02 120 chrX:6694990-6695110 2.50e-02 35_[+2(1.98e-05)]_77 chr3L:12336426-12336546 3.95e-04 5_[+1(4.73e-06)]_107 chr2L:19140961-19141081 9.90e-01 120 chr3R:26937690-26937810 6.95e-01 120 chrX:1380457-1380577 6.47e-05 30_[+3(9.72e-05)]_2_[+3(1.24e-05)]_\ 11_[+1(4.73e-06)]_53 chr2L:7027164-7027284 1.16e-01 120 chr3R:25027481-25027601 9.52e-01 120 chr2R:13999238-13999358 7.37e-01 120 chrX:10387817-10387937 9.68e-01 120 chr2L:20918890-20919010 9.06e-03 73_[+2(1.98e-05)]_39 chr3L:15565935-15566055 7.15e-04 33_[+3(6.01e-05)]_79 chr3R:5685745-5685865 4.48e-04 44_[+3(1.24e-05)]_42_[+5(1.23e-05)]_\ 18 chr3R:5856360-5856480 8.45e-01 120 chr2L:1150689-1150809 1.56e-01 120 chr2L:20881500-20881620 9.51e-02 120 chr2R:24402762-24402882 1.21e-02 42_[+5(3.24e-05)]_6_[+2(8.30e-05)]_\ 56 chrX:13391259-13391379 1.62e-01 120 chr2L:8554388-8554508 4.48e-01 120 chr2L:20715107-20715227 9.90e-01 120 chr3L:3896760-3896880 6.12e-05 77_[+3(1.24e-05)]_5_[+4(3.00e-06)]_\ 22 chrX:8606309-8606429 7.88e-03 45_[+2(8.30e-05)]_67 chr2L:18590784-18590904 5.09e-02 120 chr2L:18688805-18688925 9.51e-03 3_[+1(4.73e-06)]_109 chr2R:21183223-21183343 6.95e-02 48_[+2(8.30e-05)]_64 chr2R:23383451-23383571 3.05e-01 32_[+2(8.30e-05)]_80 chr2R:6781812-6781932 3.42e-01 41_[+2(8.30e-05)]_71 chr2R:24086516-24086636 1.72e-02 43_[+2(8.30e-05)]_69 chrX:10086374-10086494 9.02e-02 120 chrX:15739107-15739227 1.64e-02 120 chr3L:10694047-10694167 3.20e-03 26_[+5(3.24e-05)]_86 chr2R:23970159-23970279 3.47e-01 120 chr3R:18399073-18399193 7.68e-02 120 chr2L:20950780-20950900 6.32e-02 120 chr3L:8720164-8720284 5.02e-01 120 chr2R:8002323-8002443 7.22e-01 120 chrX:17176699-17176819 9.39e-01 120 chr2L:21310042-21310162 9.63e-02 120 chr3R:30195697-30195817 2.46e-01 120 chrX:6037327-6037447 6.03e-01 120 chrX:9193778-9193898 1.38e-02 120 chr2L:11203745-11203865 8.60e-03 76_[+5(1.23e-05)]_36 chr3R:23028661-23028781 4.94e-01 120 chrX:1370170-1370290 3.67e-01 120 chr3L:15967955-15968075 9.67e-01 120 chr2L:4847300-4847420 4.23e-01 120 chrX:11451149-11451269 4.56e-01 120 chr3R:24945031-24945151 9.82e-01 120 chr3R:6457107-6457227 4.93e-02 41_[+3(3.26e-05)]_71 chrX:15582969-15583089 9.92e-01 120 chr2R:7699153-7699273 2.40e-01 120 chr3R:13030650-13030770 6.44e-01 120 chr3R:27273620-27273740 1.09e-01 70_[+5(8.10e-05)]_42 chr3L:3197613-3197733 8.03e-01 120 chr2L:15629915-15630035 4.31e-01 120 chr3R:21101755-21101875 5.95e-03 5_[+1(1.55e-05)]_107 chr3L:4186816-4186936 6.43e-03 103_[+3(1.24e-05)]_9 chr2L:5520127-5520247 3.75e-01 120 chr3R:21850228-21850348 5.47e-01 120 chrX:5420826-5420946 1.10e-05 56_[+4(3.00e-06)]_7_[+2(1.98e-05)]_\ 41 chr3L:16165761-16165881 9.89e-01 120 chr2L:10856647-10856767 8.04e-01 120 chr3R:10882205-10882325 5.80e-02 120 chr2L:3042215-3042335 8.72e-02 120 chr2R:7916654-7916774 8.63e-03 111_[+1(4.73e-06)]_1 chr3L:4379045-4379165 7.06e-01 120 chr2R:5122240-5122360 8.55e-01 120 chr3R:29039812-29039932 3.57e-02 66_[+3(1.24e-05)]_37_[+3(8.00e-05)]_\ 1 chr3L:7861137-7861257 5.32e-01 120 chr2L:12002991-12003111 2.72e-01 120 chr2L:4459771-4459891 1.74e-02 74_[+3(4.48e-05)]_38 chr2R:17564773-17564893 2.72e-02 120 chr3R:26566910-26567030 6.35e-02 71_[+5(7.31e-05)]_41 chr2L:1980762-1980882 9.68e-02 7_[+2(9.53e-05)]_105 chr2R:20601086-20601206 7.89e-01 120 chr2R:12633468-12633588 7.24e-02 94_[+2(8.30e-05)]_18 chr4:43771-43891 4.35e-02 9_[+5(1.99e-05)]_103 chr3L:16571495-16571615 7.29e-01 120 chr2R:23940192-23940312 6.74e-01 120 chr3R:18274545-18274665 1.27e-01 120 chr3L:1350578-1350698 1.77e-01 120 chr2L:15751098-15751218 5.07e-01 120 chr4:867024-867144 2.76e-02 1_[+1(7.73e-06)]_111 chr3R:5588309-5588429 2.18e-01 120 chr2R:8914035-8914155 7.04e-03 82_[+4(1.26e-05)]_30 chr2R:21060508-21060628 1.11e-01 120 chr3R:20592998-20593118 4.88e-02 120 chr2L:16703820-16703940 2.10e-01 120 chrX:19505711-19505831 1.45e-03 69_[+5(1.99e-05)]_6_[+3(2.78e-05)]_\ 29 chr3R:25027680-25027800 9.12e-01 120 chrX:13334981-13335101 4.24e-04 59_[+3(2.01e-05)]_7_[+4(7.83e-06)]_\ 38 chr3L:13486724-13486844 5.70e-02 120 chr3R:30058073-30058193 7.48e-01 120 chr3L:1352116-1352236 5.02e-01 120 chr3R:10696490-10696610 5.56e-02 12_[+2(8.30e-05)]_100 chr3R:30305040-30305160 4.32e-01 120 chr3R:5613234-5613354 7.08e-05 46_[+2(1.98e-05)]_15_[+4(3.00e-06)]_\ 43 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c26n03.farnam.hpc.yale.internal ********************************************************************************