******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/HHEX.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:3323557-3323677 1.0000 120 chr2L:7215762-7215882 1.0000 120 chr2L:3228817-3228937 1.0000 120 chr3R:16255136-16255256 1.0000 120 chr3L:15597171-15597291 1.0000 120 chr2R:12035147-12035267 1.0000 120 chrX:9139266-9139386 1.0000 120 chr3L:2572134-2572254 1.0000 120 chr3R:22108466-22108586 1.0000 120 chr2R:22661320-22661440 1.0000 120 chr3L:16870870-16870990 1.0000 120 chr3L:17791619-17791739 1.0000 120 chrX:14213681-14213801 1.0000 120 chr3L:3543837-3543957 1.0000 120 chr2L:22144257-22144377 1.0000 120 chrX:515837-515957 1.0000 120 chr3L:13912855-13912975 1.0000 120 chr2L:14395177-14395297 1.0000 120 chr3R:26105949-26106069 1.0000 120 chr3L:7367955-7368075 1.0000 120 chr3R:14657165-14657285 1.0000 120 chr2R:11190917-11191037 1.0000 120 chr3L:3078911-3079031 1.0000 120 chrX:13817528-13817648 1.0000 120 chr3L:14549333-14549453 1.0000 120 chr3R:18438839-18438959 1.0000 120 chr2L:15254410-15254530 1.0000 120 chr3R:19628020-19628140 1.0000 120 chr3L:11049517-11049637 1.0000 120 chr3R:9448472-9448592 1.0000 120 chr3L:3753756-3753876 1.0000 120 chr3L:18997280-18997400 1.0000 120 chr3R:23969639-23969759 1.0000 120 chr3R:21263298-21263418 1.0000 120 chr3L:2913434-2913554 1.0000 120 chr2R:21895024-21895144 1.0000 120 chr2R:12644246-12644366 1.0000 120 chr2L:4286230-4286350 1.0000 120 chr3R:26556035-26556155 1.0000 120 chr2L:14141355-14141475 1.0000 120 chr3L:9424602-9424722 1.0000 120 chr3L:8741315-8741435 1.0000 120 chr3R:9701483-9701603 1.0000 120 chr2L:13158090-13158210 1.0000 120 chr3L:4025844-4025964 1.0000 120 chr3L:11540410-11540530 1.0000 120 chr3R:24544476-24544596 1.0000 120 chr3L:1578644-1578764 1.0000 120 chr2L:13878914-13879034 1.0000 120 chr3L:2469768-2469888 1.0000 120 chrX:12241188-12241308 1.0000 120 chr3L:10362825-10362945 1.0000 120 chr3L:10741235-10741355 1.0000 120 chr3R:23178243-23178363 1.0000 120 chr2L:19019350-19019470 1.0000 120 chr3L:6612797-6612917 1.0000 120 chr3R:21271338-21271458 1.0000 120 chr2L:9509773-9509893 1.0000 120 chrX:18082859-18082979 1.0000 120 chr2L:12700653-12700773 1.0000 120 chr3L:7866761-7866881 1.0000 120 chr3R:23297224-23297344 1.0000 120 chr2L:18548933-18549053 1.0000 120 chr3R:10411866-10411986 1.0000 120 chr3R:14077185-14077305 1.0000 120 chrX:10462062-10462182 1.0000 120 chr2R:6464949-6465069 1.0000 120 chrX:6439638-6439758 1.0000 120 chr3R:23919492-23919612 1.0000 120 chr2R:21514438-21514558 1.0000 120 chr2R:15247682-15247802 1.0000 120 chr3L:21412304-21412424 1.0000 120 chr2L:484221-484341 1.0000 120 chr3L:15591310-15591430 1.0000 120 chr3L:1151903-1152023 1.0000 120 chr2L:13839042-13839162 1.0000 120 chrX:13626041-13626161 1.0000 120 chr2L:1619242-1619362 1.0000 120 chr3L:11107543-11107663 1.0000 120 chr3L:11258582-11258702 1.0000 120 chr3L:4603553-4603673 1.0000 120 chr2L:18967011-18967131 1.0000 120 chr3L:19263576-19263696 1.0000 120 chr3R:24626322-24626442 1.0000 120 chr2L:5196835-5196955 1.0000 120 chrX:19107007-19107127 1.0000 120 chr2R:15035014-15035134 1.0000 120 chr2R:7054249-7054369 1.0000 120 chr2R:18994157-18994277 1.0000 120 chr2R:18605472-18605592 1.0000 120 chr3L:8584199-8584319 1.0000 120 chrX:12947772-12947892 1.0000 120 chr3R:30802940-30803060 1.0000 120 chr3L:8347510-8347630 1.0000 120 chr2L:117875-117995 1.0000 120 chr2L:19930254-19930374 1.0000 120 chr2R:13430031-13430151 1.0000 120 chr2L:10143420-10143540 1.0000 120 chr3L:12270060-12270180 1.0000 120 chr3L:4521948-4522068 1.0000 120 chr2R:7076987-7077107 1.0000 120 chr2R:21018396-21018516 1.0000 120 chrX:15591809-15591929 1.0000 120 chrX:3358031-3358151 1.0000 120 chr3R:31060431-31060551 1.0000 120 chr3L:18020980-18021100 1.0000 120 chr3L:10734660-10734780 1.0000 120 chrX:18494283-18494403 1.0000 120 chr2R:21549092-21549212 1.0000 120 chr2R:17085677-17085797 1.0000 120 chr3L:12350465-12350585 1.0000 120 chr3L:1690843-1690963 1.0000 120 chr3R:28556524-28556644 1.0000 120 chr3R:31810369-31810489 1.0000 120 chrX:11885466-11885586 1.0000 120 chrX:13789108-13789228 1.0000 120 chrX:17293559-17293679 1.0000 120 chr2R:21712036-21712156 1.0000 120 chr2L:16544728-16544848 1.0000 120 chr2L:3280768-3280888 1.0000 120 chr2L:20807752-20807872 1.0000 120 chrX:20503251-20503371 1.0000 120 chr2L:4829184-4829304 1.0000 120 chr3R:11872820-11872940 1.0000 120 chrX:6592197-6592317 1.0000 120 chr3R:16213007-16213127 1.0000 120 chr2R:14109859-14109979 1.0000 120 chr3L:21130977-21131097 1.0000 120 chr2R:11792766-11792886 1.0000 120 chrX:10573689-10573809 1.0000 120 chr3R:10024156-10024276 1.0000 120 chr3R:21246589-21246709 1.0000 120 chrX:5664360-5664480 1.0000 120 chr2L:5096953-5097073 1.0000 120 chr3L:17656114-17656234 1.0000 120 chr3R:23284437-23284557 1.0000 120 chr2L:12372565-12372685 1.0000 120 chr2R:12200800-12200920 1.0000 120 chr3R:14875648-14875768 1.0000 120 chr3R:5300745-5300865 1.0000 120 chr2R:7063864-7063984 1.0000 120 chr2L:2168322-2168442 1.0000 120 chr3R:26280526-26280646 1.0000 120 chr3L:6609305-6609425 1.0000 120 chrX:12925955-12926075 1.0000 120 chr2R:18398340-18398460 1.0000 120 chrX:618660-618780 1.0000 120 chr2R:18811964-18812084 1.0000 120 chr3L:1139472-1139592 1.0000 120 chr2R:15477999-15478119 1.0000 120 chrX:21322800-21322920 1.0000 120 chr3R:5413060-5413180 1.0000 120 chr2L:7635263-7635383 1.0000 120 chr3R:22121336-22121456 1.0000 120 chr3R:31169113-31169233 1.0000 120 chr3R:14300065-14300185 1.0000 120 chrX:17582794-17582914 1.0000 120 chr3R:29089835-29089955 1.0000 120 chr2R:16610083-16610203 1.0000 120 chrX:21375742-21375862 1.0000 120 chr3L:16969728-16969848 1.0000 120 chr2L:5043897-5044017 1.0000 120 chr3R:25123356-25123476 1.0000 120 chr3R:25168353-25168473 1.0000 120 chr3R:28677027-28677147 1.0000 120 chr2R:14217045-14217165 1.0000 120 chr2L:12369686-12369806 1.0000 120 chr2R:18172050-18172170 1.0000 120 chr2R:16833025-16833145 1.0000 120 chr2R:9834975-9835095 1.0000 120 chr3R:10391039-10391159 1.0000 120 chr2L:4133129-4133249 1.0000 120 chr3L:8445167-8445287 1.0000 120 chr3R:5015279-5015399 1.0000 120 chr2L:8350660-8350780 1.0000 120 chr2R:22657086-22657206 1.0000 120 chr2R:11435253-11435373 1.0000 120 chr3R:4975374-4975494 1.0000 120 chr3L:12271325-12271445 1.0000 120 chr3R:25027589-25027709 1.0000 120 chr2R:9881465-9881585 1.0000 120 chr3L:8526205-8526325 1.0000 120 chr3R:25281287-25281407 1.0000 120 chr2R:10854224-10854344 1.0000 120 chr2R:25011251-25011371 1.0000 120 chr3L:15977708-15977828 1.0000 120 chr3L:11493647-11493767 1.0000 120 chr2R:17533764-17533884 1.0000 120 chr2L:7940830-7940950 1.0000 120 chrX:8542154-8542274 1.0000 120 chr2L:16647854-16647974 1.0000 120 chrX:20631282-20631402 1.0000 120 chr3R:26888396-26888516 1.0000 120 chr3L:6522867-6522987 1.0000 120 chrX:11427494-11427614 1.0000 120 chr3R:26172167-26172287 1.0000 120 chr2L:21037869-21037989 1.0000 120 chr3R:16069416-16069536 1.0000 120 chrX:9664545-9664665 1.0000 120 chr3L:3770968-3771088 1.0000 120 chr2L:19796195-19796315 1.0000 120 chr3L:22471798-22471918 1.0000 120 chrX:20507863-20507983 1.0000 120 chr3L:10694067-10694187 1.0000 120 chr2L:16275912-16276032 1.0000 120 chr3L:14195836-14195956 1.0000 120 chr2L:14394329-14394449 1.0000 120 chr3R:21350111-21350231 1.0000 120 chr3R:20555148-20555268 1.0000 120 chr2L:16251922-16252042 1.0000 120 chr3L:2489570-2489690 1.0000 120 chr3R:16834792-16834912 1.0000 120 chr2L:1629671-1629791 1.0000 120 chrX:11807580-11807700 1.0000 120 chrX:6352271-6352391 1.0000 120 chr3R:24809725-24809845 1.0000 120 chr2L:18822971-18823091 1.0000 120 chr2R:17748532-17748652 1.0000 120 chr2R:14577746-14577866 1.0000 120 chr3R:26937600-26937720 1.0000 120 chr3L:797094-797214 1.0000 120 chrX:2947635-2947755 1.0000 120 chr3L:8629149-8629269 1.0000 120 chr2R:21503266-21503386 1.0000 120 chrX:12470799-12470919 1.0000 120 chrX:20506051-20506171 1.0000 120 chr3R:21112545-21112665 1.0000 120 chr3L:5554499-5554619 1.0000 120 chr3R:5686500-5686620 1.0000 120 chr3R:23176851-23176971 1.0000 120 chr3L:14028583-14028703 1.0000 120 chr2L:13414973-13415093 1.0000 120 chr3R:21161815-21161935 1.0000 120 chr2L:20881489-20881609 1.0000 120 chr3L:14555224-14555344 1.0000 120 chrX:15384058-15384178 1.0000 120 chr2L:21149255-21149375 1.0000 120 chr2L:4441005-4441125 1.0000 120 chr3R:31134130-31134250 1.0000 120 chrX:11570404-11570524 1.0000 120 chr2L:3472394-3472514 1.0000 120 chr3L:3305584-3305704 1.0000 120 chr3L:3165062-3165182 1.0000 120 chr3L:10206244-10206364 1.0000 120 chr2R:24593736-24593856 1.0000 120 chr3R:24010905-24011025 1.0000 120 chr3R:20555841-20555961 1.0000 120 chr3R:17680846-17680966 1.0000 120 chr2L:10468564-10468684 1.0000 120 chr2L:19191903-19192023 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_HHEX/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/HHEX.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.309 C 0.192 G 0.188 T 0.311 Background letter frequencies (from file dataset with add-one prior applied): A 0.309 C 0.192 G 0.188 T 0.311 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ATATKTAY MEME-1 width = 8 sites = 62 llr = 489 E-value = 1.5e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATATKTAY MEME-1 Description -------------------------------------------------------------------------------- Simplified A a:a:1:7: pos.-specific C :::::::7 probability G ::::4:3: matrix T :a:a5a:3 bits 2.4 2.2 1.9 1.7 **** * Relative 1.4 **** * Entropy 1.2 **** * * (11.4 bits) 1.0 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATATTTAC consensus G GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATKTAY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:20555841-20555961 113 3.20e-05 ATCAGTTGAt atatgtac chr3L:3305584-3305704 61 3.20e-05 AGCTATACGA ATATGTAC CATATTTATT chr3L:5554499-5554619 33 3.20e-05 TCTAAAGCTT ATATGTAC AAACTCATAT chr2L:18822971-18823091 13 3.20e-05 CATATGTACA ATATGTAC CTTCCGTAAA chr3R:4975374-4975494 43 3.20e-05 TATTTTCATA ATATGTAC GGCACAATAT chr2R:16833025-16833145 105 3.20e-05 ATACATATGT ATATGTAC TGTATATA chrX:21375742-21375862 49 3.20e-05 TGCAATAATA ATATGTAC ACTGATTTTA chr2R:18398340-18398460 29 3.20e-05 AGGTGTGTAT ATATGTAC AGTAAATAGA chrX:13626041-13626161 55 3.20e-05 ATGTATGTAC ATATGTAC ATTTGTGTAC chr3R:21271338-21271458 57 3.20e-05 ACAAGAATAA ATATGTAC AAAAGTACGA chr3R:9448472-9448592 60 3.20e-05 atacatatgt atatgtac acagttgttg chr2L:14395177-14395297 110 3.20e-05 acgtacgtac atatgtac gta chr3L:13912855-13912975 62 3.20e-05 acatacaaac atatgtac aaacatatgt chr2L:22144257-22144377 44 3.20e-05 ATGTACATAC ATATGTAC ATATAAATAG chr3L:17791619-17791739 96 3.20e-05 ATTAAGACAA ATATGTAC TTTTTATACA chr3L:15597171-15597291 37 3.20e-05 ATTGAAGTAC ATATGTAC ATAAGGAAAC chr3R:23176851-23176971 36 8.50e-05 TTTCGCGCTA ATATTTAC ACTGAGACAC chr3R:16069416-16069536 97 8.50e-05 ACGCATTAAC ATATTTAC ACGCAtcgtt chr2L:4133129-4133249 7 8.50e-05 CCACCC ATATTTAC CGTAGCAACA chr3R:23284437-23284557 75 8.50e-05 TGCTGGCCAA ATATTTAC CAGGCCATAA chr2L:20807752-20807872 44 8.50e-05 GGTTGTCTAA ATATTTAC AGCAGGCAAA chr2R:17085677-17085797 43 8.50e-05 TATTTATGAG ATATTTAC CTGCAAAGTC chr3R:30802940-30803060 26 8.50e-05 CTAGGACTGC ATATTTAC GTTGTTCAGA chr3R:23919492-23919612 103 8.50e-05 TGCCAGGTAA ATATTTAC CCTCGAGCCg chrX:6439638-6439758 89 8.50e-05 AGTTTATTAA ATATTTAC ATATAATCCC chr2L:4286230-4286350 32 8.50e-05 TGGAAGCGAA ATATTTAC ATATTGTTCT chr3L:3078911-3079031 79 8.50e-05 TCGTGTGTAC ATATTTAC ACACAATTTA chr3R:25168353-25168473 104 1.05e-04 ATATCATATT ATATGTGC CTATAAGCA chr2L:10468564-10468684 73 1.37e-04 gcttggtcat atatttgc ctctgtctct chr2L:13414973-13415093 2 1.37e-04 A ATATTTGC CTATGGAATT chrX:12470799-12470919 62 1.37e-04 TTTTGAGAAA ATATTTGC TTTGTTGTTG chr3R:5015279-5015399 22 1.37e-04 aCGGCGGGTC ATATTTGC CCGTGTTCGC chr3R:14300065-14300185 112 1.37e-04 CACTGGACTA ATATTTGC C chr2L:3280768-3280888 77 1.37e-04 ACTTCTGTCA ATATTTGC CAAGACACAT chr3L:12350465-12350585 53 1.37e-04 CGAGGCTGCG ATATTTGC ACAGTTGTGT chr2R:15247682-15247802 85 1.37e-04 CTTACAATAA ATATTTGC CCTGGGGCCC chr3R:24010905-24011025 39 1.89e-04 GAAAAAATAT ATATGTAT ATACCATTAG chr3R:21112545-21112665 29 1.89e-04 TTATGTGTAG ATATGTAT GAACAGAGGT chr3R:26280526-26280646 35 1.89e-04 CCAAGCAAAT ATATGTAT AAATACGATA chr2L:2168322-2168442 44 1.89e-04 CATAATGTTT ATATGTAT TATGAAATGT chr2R:21018396-21018516 89 1.89e-04 CCAAGCAGTT ATATGTAT TTTGATTTAA chr2L:10143420-10143540 71 1.89e-04 ACCCGGGCAG ATATGTAT ATATTTTGGA chrX:18082859-18082979 17 1.89e-04 CAGAATACAC ATATGTAT ATGATTGTTG chr3L:9424602-9424722 105 1.89e-04 TGCACATAAA ATATGTAT AAAAATAA chr3L:18997280-18997400 54 1.89e-04 CACTATAGTt atatgtat gtttatgtgt chr2R:14577746-14577866 46 2.74e-04 CTGCGAATAA ATATTTAT TTGGCATTTA chrX:8542154-8542274 25 2.74e-04 TTTGAATTAT ATATTTAT TTTGTTTTTA chr3R:11872820-11872940 19 2.74e-04 GATTATAAAT ATATTTAT TATGTGCGAT chr3L:1690843-1690963 37 2.74e-04 AGCTGTTCAC ATATTTAT ATAGCTGGCT chr3L:12270060-12270180 41 2.74e-04 TGGTCCCTGA ATATTTAT TCTTTTGCTT chr2R:12035147-12035267 41 2.74e-04 ATACAAACGA ATATTTAT TTCCAATCTT chr3R:24809725-24809845 54 3.58e-04 GTTTTTATAA ATATTTGT CATTACCGCC chrX:17582794-17582914 80 3.58e-04 TGGTAAATAC ATATTTGT ATGGTAGTTT chr2R:21712036-21712156 70 3.58e-04 AAATTAAAGC ATATTTGT CTTTCAGTAA chr3L:11258582-11258702 110 3.58e-04 AAATGTATCT ATATTTGT AGA chrX:10462062-10462182 5 3.58e-04 ACAT ATATTTGT ATGCATTTAT chr2L:13158090-13158210 12 3.58e-04 GAAGTATGCA ATATTTGT TTTCAAATCA chr3R:25123356-25123476 3 4.11e-04 AG ATATATAC TGATATTGAA chr3R:14875648-14875768 93 4.11e-04 AGCCTGATGA ATATATAC AAATACTTAT chr2R:7054249-7054369 60 4.11e-04 ACAGTAACAT ATATATAC TGATAATTTC chr2R:14217045-14217165 3 4.43e-04 GC ATATATGC TTATCGCAAA chr3R:22121336-22121456 62 4.43e-04 ATAATAAAAA ATATATGC GTCAAAAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATKTAY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:20555841-20555961 3.2e-05 112_[+1] chr3L:3305584-3305704 3.2e-05 60_[+1]_52 chr3L:5554499-5554619 3.2e-05 32_[+1]_80 chr2L:18822971-18823091 3.2e-05 12_[+1]_100 chr3R:4975374-4975494 3.2e-05 42_[+1]_70 chr2R:16833025-16833145 3.2e-05 104_[+1]_8 chrX:21375742-21375862 3.2e-05 48_[+1]_64 chr2R:18398340-18398460 3.2e-05 28_[+1]_84 chrX:13626041-13626161 3.2e-05 54_[+1]_58 chr3R:21271338-21271458 3.2e-05 56_[+1]_56 chr3R:9448472-9448592 3.2e-05 59_[+1]_53 chr2L:14395177-14395297 3.2e-05 109_[+1]_3 chr3L:13912855-13912975 3.2e-05 61_[+1]_51 chr2L:22144257-22144377 3.2e-05 43_[+1]_69 chr3L:17791619-17791739 3.2e-05 95_[+1]_17 chr3L:15597171-15597291 3.2e-05 36_[+1]_76 chr3R:23176851-23176971 8.5e-05 35_[+1]_77 chr3R:16069416-16069536 8.5e-05 96_[+1]_16 chr2L:4133129-4133249 8.5e-05 6_[+1]_106 chr3R:23284437-23284557 8.5e-05 74_[+1]_38 chr2L:20807752-20807872 8.5e-05 43_[+1]_69 chr2R:17085677-17085797 8.5e-05 42_[+1]_70 chr3R:30802940-30803060 8.5e-05 25_[+1]_87 chr3R:23919492-23919612 8.5e-05 102_[+1]_10 chrX:6439638-6439758 8.5e-05 88_[+1]_24 chr2L:4286230-4286350 8.5e-05 31_[+1]_81 chr3L:3078911-3079031 8.5e-05 78_[+1]_34 chr3R:25168353-25168473 0.0001 103_[+1]_9 chr2L:10468564-10468684 0.00014 72_[+1]_40 chr2L:13414973-13415093 0.00014 1_[+1]_111 chrX:12470799-12470919 0.00014 61_[+1]_51 chr3R:5015279-5015399 0.00014 21_[+1]_91 chr3R:14300065-14300185 0.00014 111_[+1]_1 chr2L:3280768-3280888 0.00014 76_[+1]_36 chr3L:12350465-12350585 0.00014 52_[+1]_60 chr2R:15247682-15247802 0.00014 84_[+1]_28 chr3R:24010905-24011025 0.00019 38_[+1]_74 chr3R:21112545-21112665 0.00019 28_[+1]_84 chr3R:26280526-26280646 0.00019 34_[+1]_78 chr2L:2168322-2168442 0.00019 43_[+1]_69 chr2R:21018396-21018516 0.00019 88_[+1]_24 chr2L:10143420-10143540 0.00019 70_[+1]_42 chrX:18082859-18082979 0.00019 16_[+1]_96 chr3L:9424602-9424722 0.00019 104_[+1]_8 chr3L:18997280-18997400 0.00019 53_[+1]_59 chr2R:14577746-14577866 0.00027 45_[+1]_67 chrX:8542154-8542274 0.00027 24_[+1]_88 chr3R:11872820-11872940 0.00027 18_[+1]_94 chr3L:1690843-1690963 0.00027 36_[+1]_76 chr3L:12270060-12270180 0.00027 40_[+1]_72 chr2R:12035147-12035267 0.00027 40_[+1]_72 chr3R:24809725-24809845 0.00036 53_[+1]_59 chrX:17582794-17582914 0.00036 79_[+1]_33 chr2R:21712036-21712156 0.00036 69_[+1]_43 chr3L:11258582-11258702 0.00036 109_[+1]_3 chrX:10462062-10462182 0.00036 4_[+1]_108 chr2L:13158090-13158210 0.00036 11_[+1]_101 chr3R:25123356-25123476 0.00041 2_[+1]_110 chr3R:14875648-14875768 0.00041 92_[+1]_20 chr2R:7054249-7054369 0.00041 59_[+1]_53 chr2R:14217045-14217165 0.00044 2_[+1]_110 chr3R:22121336-22121456 0.00044 61_[+1]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATKTAY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATATKTAY width=8 seqs=62 chr3R:20555841-20555961 ( 113) ATATGTAC 1 chr3L:3305584-3305704 ( 61) ATATGTAC 1 chr3L:5554499-5554619 ( 33) ATATGTAC 1 chr2L:18822971-18823091 ( 13) ATATGTAC 1 chr3R:4975374-4975494 ( 43) ATATGTAC 1 chr2R:16833025-16833145 ( 105) ATATGTAC 1 chrX:21375742-21375862 ( 49) ATATGTAC 1 chr2R:18398340-18398460 ( 29) ATATGTAC 1 chrX:13626041-13626161 ( 55) ATATGTAC 1 chr3R:21271338-21271458 ( 57) ATATGTAC 1 chr3R:9448472-9448592 ( 60) ATATGTAC 1 chr2L:14395177-14395297 ( 110) ATATGTAC 1 chr3L:13912855-13912975 ( 62) ATATGTAC 1 chr2L:22144257-22144377 ( 44) ATATGTAC 1 chr3L:17791619-17791739 ( 96) ATATGTAC 1 chr3L:15597171-15597291 ( 37) ATATGTAC 1 chr3R:23176851-23176971 ( 36) ATATTTAC 1 chr3R:16069416-16069536 ( 97) ATATTTAC 1 chr2L:4133129-4133249 ( 7) ATATTTAC 1 chr3R:23284437-23284557 ( 75) ATATTTAC 1 chr2L:20807752-20807872 ( 44) ATATTTAC 1 chr2R:17085677-17085797 ( 43) ATATTTAC 1 chr3R:30802940-30803060 ( 26) ATATTTAC 1 chr3R:23919492-23919612 ( 103) ATATTTAC 1 chrX:6439638-6439758 ( 89) ATATTTAC 1 chr2L:4286230-4286350 ( 32) ATATTTAC 1 chr3L:3078911-3079031 ( 79) ATATTTAC 1 chr3R:25168353-25168473 ( 104) ATATGTGC 1 chr2L:10468564-10468684 ( 73) ATATTTGC 1 chr2L:13414973-13415093 ( 2) ATATTTGC 1 chrX:12470799-12470919 ( 62) ATATTTGC 1 chr3R:5015279-5015399 ( 22) ATATTTGC 1 chr3R:14300065-14300185 ( 112) ATATTTGC 1 chr2L:3280768-3280888 ( 77) ATATTTGC 1 chr3L:12350465-12350585 ( 53) ATATTTGC 1 chr2R:15247682-15247802 ( 85) ATATTTGC 1 chr3R:24010905-24011025 ( 39) ATATGTAT 1 chr3R:21112545-21112665 ( 29) ATATGTAT 1 chr3R:26280526-26280646 ( 35) ATATGTAT 1 chr2L:2168322-2168442 ( 44) ATATGTAT 1 chr2R:21018396-21018516 ( 89) ATATGTAT 1 chr2L:10143420-10143540 ( 71) ATATGTAT 1 chrX:18082859-18082979 ( 17) ATATGTAT 1 chr3L:9424602-9424722 ( 105) ATATGTAT 1 chr3L:18997280-18997400 ( 54) ATATGTAT 1 chr2R:14577746-14577866 ( 46) ATATTTAT 1 chrX:8542154-8542274 ( 25) ATATTTAT 1 chr3R:11872820-11872940 ( 19) ATATTTAT 1 chr3L:1690843-1690963 ( 37) ATATTTAT 1 chr3L:12270060-12270180 ( 41) ATATTTAT 1 chr2R:12035147-12035267 ( 41) ATATTTAT 1 chr3R:24809725-24809845 ( 54) ATATTTGT 1 chrX:17582794-17582914 ( 80) ATATTTGT 1 chr2R:21712036-21712156 ( 70) ATATTTGT 1 chr3L:11258582-11258702 ( 110) ATATTTGT 1 chrX:10462062-10462182 ( 5) ATATTTGT 1 chr2L:13158090-13158210 ( 12) ATATTTGT 1 chr3R:25123356-25123476 ( 3) ATATATAC 1 chr3R:14875648-14875768 ( 93) ATATATAC 1 chr2R:7054249-7054369 ( 60) ATATATAC 1 chr2R:14217045-14217165 ( 3) ATATATGC 1 chr3R:22121336-22121456 ( 62) ATATATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATKTAY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1293 E= 1.5e-006 170 -1260 -1260 -1260 -1260 -1260 -1260 168 170 -1260 -1260 -1260 -1260 -1260 -1260 168 -194 -1260 116 68 -1260 -1260 -1260 168 123 -1260 54 -1260 -1260 178 -1260 12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATKTAY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 1.5e-006 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.080645 0.000000 0.419355 0.500000 0.000000 0.000000 0.000000 1.000000 0.725806 0.000000 0.274194 0.000000 0.000000 0.661290 0.000000 0.338710 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATKTAY MEME-1 regular expression -------------------------------------------------------------------------------- ATAT[TG]T[AG][CT] -------------------------------------------------------------------------------- Time 7.47 secs. ******************************************************************************** ******************************************************************************** MOTIF YGGGGGCG MEME-2 width = 8 sites = 11 llr = 116 E-value = 2.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGGGGGCG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::3 pos.-specific C 41:2::a: probability G 29a8aa:7 matrix T 5::::::: bits 2.4 * *** 2.2 * *** 1.9 ** *** 1.7 ****** Relative 1.4 ******* Entropy 1.2 ******* (15.2 bits) 1.0 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGGGGCG consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGGGGCG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:19191903-19192023 49 1.63e-06 TTCTGTGGAT CGGGGGCG CAGGGAGCTG chr3R:16069416-16069536 18 1.63e-06 cggagcggag cgggggcg gtacagcgga chrX:6592197-6592317 23 1.63e-06 GAATGGGTGG CGGGGGCG GGGGGGTATG chr2R:7063864-7063984 13 4.26e-06 GAAAAATAAA TGGGGGCG ATCAATGGGT chr3L:1151903-1152023 58 4.26e-06 GCCTGCCGTT TGGGGGCG TGGCAGGCCG chr3L:1690843-1690963 9 8.53e-06 CTCGAGTG CGGGGGCA AGGTGCTAAA chr2L:21037869-21037989 7 1.72e-05 CAGCAG TGGCGGCG CTTGTTTGGT chr2L:4133129-4133249 27 1.72e-05 TAGCAACAAC TGGCGGCG AACGGCAGTT chrX:21375742-21375862 8 1.98e-05 GTTTGTG GGGGGGCA AAAAACACAA chr2R:11792766-11792886 3 1.98e-05 AA GGGGGGCA CTCAAAGATG chr3L:16969728-16969848 72 2.58e-05 TGTGGGGCCT TCGGGGCG CCTGACCCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGGGGCG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:19191903-19192023 1.6e-06 48_[+2]_64 chr3R:16069416-16069536 1.6e-06 17_[+2]_95 chrX:6592197-6592317 1.6e-06 22_[+2]_90 chr2R:7063864-7063984 4.3e-06 12_[+2]_100 chr3L:1151903-1152023 4.3e-06 57_[+2]_55 chr3L:1690843-1690963 8.5e-06 8_[+2]_104 chr2L:21037869-21037989 1.7e-05 6_[+2]_106 chr2L:4133129-4133249 1.7e-05 26_[+2]_86 chrX:21375742-21375862 2e-05 7_[+2]_105 chr2R:11792766-11792886 2e-05 2_[+2]_110 chr3L:16969728-16969848 2.6e-05 71_[+2]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGGGGCG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGGGGGCG width=8 seqs=11 chr2L:19191903-19192023 ( 49) CGGGGGCG 1 chr3R:16069416-16069536 ( 18) CGGGGGCG 1 chrX:6592197-6592317 ( 23) CGGGGGCG 1 chr2R:7063864-7063984 ( 13) TGGGGGCG 1 chr3L:1151903-1152023 ( 58) TGGGGGCG 1 chr3L:1690843-1690963 ( 9) CGGGGGCA 1 chr2L:21037869-21037989 ( 7) TGGCGGCG 1 chr2L:4133129-4133249 ( 27) TGGCGGCG 1 chrX:21375742-21375862 ( 8) GGGGGGCA 1 chr2R:11792766-11792886 ( 3) GGGGGGCA 1 chr3L:16969728-16969848 ( 72) TCGGGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGGGGCG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 2.9e+002 -1010 92 -5 55 -1010 -108 227 -1010 -1010 -1010 241 -1010 -1010 -8 212 -1010 -1010 -1010 241 -1010 -1010 -1010 241 -1010 -1010 238 -1010 -1010 -18 -1010 195 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGGGGCG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.9e+002 0.000000 0.363636 0.181818 0.454545 0.000000 0.090909 0.909091 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.181818 0.818182 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.272727 0.000000 0.727273 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGGGGCG MEME-2 regular expression -------------------------------------------------------------------------------- [TC]GGGGGC[GA] -------------------------------------------------------------------------------- Time 13.70 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCGCCA MEME-3 width = 8 sites = 5 llr = 62 E-value = 3.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C :::a:aa: probability G :aa:a::: matrix T a::::::: bits 2.4 ****** 2.2 ****** 1.9 ****** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.8 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGCGCCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3472394-3472514 72 4.52e-06 CCTGTGCAGA TGGCGCCA CCATGACGCG chrX:6352271-6352391 4 4.52e-06 GAT TGGCGCCA TTCAGTTGCC chr3R:16834792-16834912 74 4.52e-06 CAGAGCACAT TGGCGCCA TCTGTATTCC chr3L:10694067-10694187 98 4.52e-06 AACGATAGTT TGGCGCCA AAAATTGATT chr3R:24544476-24544596 75 4.52e-06 TGTTCTATTT TGGCGCCA AAAATAGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3472394-3472514 4.5e-06 71_[+3]_41 chrX:6352271-6352391 4.5e-06 3_[+3]_109 chr3R:16834792-16834912 4.5e-06 73_[+3]_39 chr3L:10694067-10694187 4.5e-06 97_[+3]_15 chr3R:24544476-24544596 4.5e-06 74_[+3]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCGCCA width=8 seqs=5 chr2L:3472394-3472514 ( 72) TGGCGCCA 1 chrX:6352271-6352391 ( 4) TGGCGCCA 1 chr3R:16834792-16834912 ( 74) TGGCGCCA 1 chr3L:10694067-10694187 ( 98) TGGCGCCA 1 chr3R:24544476-24544596 ( 75) TGGCGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 3.0e+003 -897 -897 -897 168 -897 -897 241 -897 -897 -897 241 -897 -897 238 -897 -897 -897 -897 241 -897 -897 238 -897 -897 -897 238 -897 -897 169 -897 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 3.0e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-3 regular expression -------------------------------------------------------------------------------- TGGCGCCA -------------------------------------------------------------------------------- Time 19.90 secs. ******************************************************************************** ******************************************************************************** MOTIF CRTTTCCG MEME-4 width = 8 sites = 12 llr = 125 E-value = 5.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRTTTCCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :3:::::: pos.-specific C a:1::9a: probability G :7:::::a matrix T ::9aa1:: bits 2.4 * ** 2.2 * ** 1.9 * *** 1.7 * ***** Relative 1.4 * ****** Entropy 1.2 ******** (15.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGTTTCCG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRTTTCCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:13414973-13415093 68 7.52e-06 GCGCTCTTTC CGTTTCCG CTTTGCTCTC chr2L:19796195-19796315 46 7.52e-06 TTTTCATCCC CGTTTCCG GCACTTCCGG chr3R:25123356-25123476 111 7.52e-06 CCTTCACTTT CGTTTCCG GC chr2L:5096953-5097073 89 7.52e-06 GCAGCTCTTC CGTTTCCG CTTCCAACAA chrX:10462062-10462182 89 7.52e-06 CTCTTCGTTC CGTTTCCG GCCTAAACGT chr3L:2913434-2913554 102 7.52e-06 CTCCCCATTT CGTTTCCG AAATTGCGAT chr2R:25011251-25011371 40 1.99e-05 TGCCTGTGCA CATTTCCG ATTTTTTTTT chr2R:16610083-16610203 37 1.99e-05 TATGCTGGCC CATTTCCG GTCAGATGAG chr3L:18020980-18021100 45 1.99e-05 CTTCCGCTGC CATTTCCG TTCGCCATCG chr3R:23297224-23297344 107 1.99e-05 CGCTTACGAC CATTTCCG GTTGAA chrX:9139266-9139386 72 2.45e-05 AGCAGCTGGG CGCTTCCG GCGCAGCATT chr3L:3078911-3079031 112 3.67e-05 CGTACGATTT CGTTTTCG T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRTTTCCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:13414973-13415093 7.5e-06 67_[+4]_45 chr2L:19796195-19796315 7.5e-06 45_[+4]_67 chr3R:25123356-25123476 7.5e-06 110_[+4]_2 chr2L:5096953-5097073 7.5e-06 88_[+4]_24 chrX:10462062-10462182 7.5e-06 88_[+4]_24 chr3L:2913434-2913554 7.5e-06 101_[+4]_11 chr2R:25011251-25011371 2e-05 39_[+4]_73 chr2R:16610083-16610203 2e-05 36_[+4]_76 chr3L:18020980-18021100 2e-05 44_[+4]_68 chr3R:23297224-23297344 2e-05 106_[+4]_6 chrX:9139266-9139386 2.5e-05 71_[+4]_41 chr3L:3078911-3079031 3.7e-05 111_[+4]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRTTTCCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRTTTCCG width=8 seqs=12 chr2L:13414973-13415093 ( 68) CGTTTCCG 1 chr2L:19796195-19796315 ( 46) CGTTTCCG 1 chr3R:25123356-25123476 ( 111) CGTTTCCG 1 chr2L:5096953-5097073 ( 89) CGTTTCCG 1 chrX:10462062-10462182 ( 89) CGTTTCCG 1 chr3L:2913434-2913554 ( 102) CGTTTCCG 1 chr2R:25011251-25011371 ( 40) CATTTCCG 1 chr2R:16610083-16610203 ( 37) CATTTCCG 1 chr3L:18020980-18021100 ( 45) CATTTCCG 1 chr3R:23297224-23297344 ( 107) CATTTCCG 1 chrX:9139266-9139386 ( 72) CGCTTCCG 1 chr3L:3078911-3079031 ( 112) CGTTTTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRTTTCCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8592 E= 5.2e+003 -1023 238 -1023 -1023 11 -1023 182 -1023 -1023 -120 -1023 156 -1023 -1023 -1023 168 -1023 -1023 -1023 168 -1023 225 -1023 -190 -1023 238 -1023 -1023 -1023 -1023 241 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRTTTCCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 5.2e+003 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.083333 0.000000 0.916667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.916667 0.000000 0.083333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRTTTCCG MEME-4 regular expression -------------------------------------------------------------------------------- C[GA]TTTCCG -------------------------------------------------------------------------------- Time 26.09 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCTGGG MEME-5 width = 8 sites = 2 llr = 26 E-value = 2.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCTGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::a:::: probability G aaa::aaa matrix T ::::a::: bits 2.4 **** *** 2.2 **** *** 1.9 **** *** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGCTGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:20507863-20507983 16 2.64e-06 CTGAGAGAAA GGGCTGGG CCACTTTACT chr3R:16255136-16255256 61 2.64e-06 acagaggcaa gggctggg gaacggggca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:20507863-20507983 2.6e-06 15_[+5]_97 chr3R:16255136-16255256 2.6e-06 60_[+5]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCTGGG width=8 seqs=2 chrX:20507863-20507983 ( 16) GGGCTGGG 1 chr3R:16255136-16255256 ( 61) GGGCTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.5e+004 -765 -765 240 -765 -765 -765 240 -765 -765 -765 240 -765 -765 237 -765 -765 -765 -765 -765 168 -765 -765 240 -765 -765 -765 240 -765 -765 -765 240 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.5e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGGG MEME-5 regular expression -------------------------------------------------------------------------------- GGGCTGGG -------------------------------------------------------------------------------- Time 32.28 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3323557-3323677 3.67e-01 120 chr2L:7215762-7215882 6.44e-02 120 chr2L:3228817-3228937 9.84e-01 120 chr3R:16255136-16255256 1.70e-03 26_[+2(4.00e-05)]_26_[+5(2.64e-06)]_\ 16_[+5(8.48e-06)]_28 chr3L:15597171-15597291 1.82e-01 36_[+1(3.20e-05)]_76 chr2R:12035147-12035267 1.98e-01 120 chrX:9139266-9139386 1.06e-03 71_[+4(2.45e-05)]_41 chr3L:2572134-2572254 6.30e-01 120 chr3R:22108466-22108586 9.17e-01 120 chr2R:22661320-22661440 4.28e-01 120 chr3L:16870870-16870990 8.56e-01 120 chr3L:17791619-17791739 2.79e-01 95_[+1(3.20e-05)]_17 chrX:14213681-14213801 9.45e-01 120 chr3L:3543837-3543957 3.24e-01 120 chr2L:22144257-22144377 7.46e-02 43_[+1(3.20e-05)]_59_[+1(8.50e-05)]_\ 2 chrX:515837-515957 1.89e-01 44_[+5(8.79e-05)]_68 chr3L:13912855-13912975 1.54e-01 61_[+1(3.20e-05)]_51 chr2L:14395177-14395297 2.06e-02 109_[+1(3.20e-05)]_3 chr3R:26105949-26106069 5.99e-01 120 chr3L:7367955-7368075 1.75e-01 120 chr3R:14657165-14657285 9.87e-01 120 chr2R:11190917-11191037 1.51e-01 120 chr3L:3078911-3079031 1.78e-02 78_[+1(8.50e-05)]_25_[+4(3.67e-05)]_\ 1 chrX:13817528-13817648 5.05e-01 120 chr3L:14549333-14549453 4.35e-01 120 chr3R:18438839-18438959 8.00e-01 120 chr2L:15254410-15254530 8.78e-01 120 chr3R:19628020-19628140 8.07e-01 120 chr3L:11049517-11049637 4.63e-01 120 chr3R:9448472-9448592 1.26e-01 59_[+1(3.20e-05)]_53 chr3L:3753756-3753876 3.24e-01 120 chr3L:18997280-18997400 3.33e-01 120 chr3R:23969639-23969759 9.41e-01 120 chr3R:21263298-21263418 3.17e-02 120 chr3L:2913434-2913554 6.98e-02 101_[+4(7.52e-06)]_11 chr2R:21895024-21895144 9.67e-01 120 chr2R:12644246-12644366 1.07e-02 8_[+5(8.79e-05)]_104 chr2L:4286230-4286350 1.69e-01 31_[+1(8.50e-05)]_81 chr3R:26556035-26556155 8.91e-01 120 chr2L:14141355-14141475 9.79e-01 120 chr3L:9424602-9424722 4.65e-02 120 chr3L:8741315-8741435 3.45e-01 120 chr3R:9701483-9701603 6.81e-01 120 chr2L:13158090-13158210 2.40e-01 120 chr3L:4025844-4025964 5.48e-01 120 chr3L:11540410-11540530 7.46e-02 120 chr3R:24544476-24544596 1.18e-02 74_[+3(4.52e-06)]_38 chr3L:1578644-1578764 6.94e-01 120 chr2L:13878914-13879034 9.31e-01 120 chr3L:2469768-2469888 6.64e-01 120 chrX:12241188-12241308 7.77e-01 120 chr3L:10362825-10362945 2.39e-01 120 chr3L:10741235-10741355 9.37e-01 120 chr3R:23178243-23178363 7.15e-02 120 chr2L:19019350-19019470 7.03e-01 120 chr3L:6612797-6612917 4.18e-01 120 chr3R:21271338-21271458 2.95e-02 56_[+1(3.20e-05)]_56 chr2L:9509773-9509893 9.07e-01 120 chrX:18082859-18082979 4.24e-02 120 chr2L:12700653-12700773 4.99e-01 120 chr3L:7866761-7866881 2.74e-01 120 chr3R:23297224-23297344 2.49e-02 106_[+4(1.99e-05)]_6 chr2L:18548933-18549053 5.87e-01 120 chr3R:10411866-10411986 8.78e-01 120 chr3R:14077185-14077305 9.16e-01 120 chrX:10462062-10462182 9.58e-03 88_[+4(7.52e-06)]_24 chr2R:6464949-6465069 3.56e-01 120 chrX:6439638-6439758 8.37e-02 88_[+1(8.50e-05)]_24 chr3R:23919492-23919612 1.48e-01 102_[+1(8.50e-05)]_10 chr2R:21514438-21514558 7.56e-01 120 chr2R:15247682-15247802 9.66e-03 120 chr3L:21412304-21412424 8.22e-01 120 chr2L:484221-484341 9.85e-01 120 chr3L:15591310-15591430 3.09e-01 120 chr3L:1151903-1152023 6.01e-04 57_[+2(4.26e-06)]_55 chr2L:13839042-13839162 6.22e-01 120 chrX:13626041-13626161 3.21e-02 54_[+1(3.20e-05)]_58 chr2L:1619242-1619362 9.72e-01 120 chr3L:11107543-11107663 8.99e-01 120 chr3L:11258582-11258702 4.05e-01 120 chr3L:4603553-4603673 9.98e-01 120 chr2L:18967011-18967131 5.39e-01 120 chr3L:19263576-19263696 5.54e-01 120 chr3R:24626322-24626442 4.37e-01 120 chr2L:5196835-5196955 7.62e-02 8_[+5(8.79e-05)]_104 chrX:19107007-19107127 7.41e-01 120 chr2R:15035014-15035134 3.12e-02 120 chr2R:7054249-7054369 5.30e-01 120 chr2R:18994157-18994277 9.97e-01 120 chr2R:18605472-18605592 9.38e-01 120 chr3L:8584199-8584319 8.29e-01 120 chrX:12947772-12947892 3.73e-01 120 chr3R:30802940-30803060 2.07e-02 3_[+4(8.43e-05)]_14_[+1(8.50e-05)]_\ 87 chr3L:8347510-8347630 2.13e-01 120 chr2L:117875-117995 7.68e-01 120 chr2L:19930254-19930374 8.98e-01 120 chr2R:13430031-13430151 4.88e-01 120 chr2L:10143420-10143540 1.51e-02 120 chr3L:12270060-12270180 5.37e-01 120 chr3L:4521948-4522068 5.36e-01 120 chr2R:7076987-7077107 5.87e-01 120 chr2R:21018396-21018516 1.82e-01 120 chrX:15591809-15591929 2.74e-01 120 chrX:3358031-3358151 3.32e-01 120 chr3R:31060431-31060551 1.31e-01 120 chr3L:18020980-18021100 9.92e-02 44_[+4(1.99e-05)]_68 chr3L:10734660-10734780 6.41e-02 111_[+4(7.19e-05)]_1 chrX:18494283-18494403 9.79e-01 120 chr2R:21549092-21549212 6.98e-02 120 chr2R:17085677-17085797 1.96e-02 42_[+1(8.50e-05)]_70 chr3L:12350465-12350585 2.60e-02 120 chr3L:1690843-1690963 9.49e-04 8_[+2(8.53e-06)]_104 chr3R:28556524-28556644 1.12e-01 120 chr3R:31810369-31810489 9.77e-01 120 chrX:11885466-11885586 3.37e-01 120 chrX:13789108-13789228 9.83e-01 120 chrX:17293559-17293679 9.88e-01 120 chr2R:21712036-21712156 3.78e-01 120 chr2L:16544728-16544848 7.68e-01 120 chr2L:3280768-3280888 1.44e-01 120 chr2L:20807752-20807872 1.01e-01 43_[+1(8.50e-05)]_69 chrX:20503251-20503371 4.57e-01 120 chr2L:4829184-4829304 2.31e-02 101_[+2(6.33e-05)]_11 chr3R:11872820-11872940 2.56e-01 120 chrX:6592197-6592317 5.00e-06 22_[+2(1.63e-06)]_90 chr3R:16213007-16213127 9.18e-01 120 chr2R:14109859-14109979 3.66e-01 120 chr3L:21130977-21131097 1.48e-01 120 chr2R:11792766-11792886 6.73e-02 2_[+2(1.98e-05)]_110 chrX:10573689-10573809 2.32e-01 120 chr3R:10024156-10024276 7.94e-01 120 chr3R:21246589-21246709 5.45e-01 120 chrX:5664360-5664480 2.05e-02 120 chr2L:5096953-5097073 4.71e-02 88_[+4(7.52e-06)]_24 chr3L:17656114-17656234 5.02e-01 120 chr3R:23284437-23284557 1.19e-01 74_[+1(8.50e-05)]_38 chr2L:12372565-12372685 3.96e-01 120 chr2R:12200800-12200920 1.72e-02 31_[+3(2.46e-05)]_81 chr3R:14875648-14875768 7.76e-01 120 chr3R:5300745-5300865 1.61e-02 120 chr2R:7063864-7063984 5.31e-03 12_[+2(4.26e-06)]_100 chr2L:2168322-2168442 1.56e-01 120 chr3R:26280526-26280646 5.06e-01 120 chr3L:6609305-6609425 8.12e-03 120 chrX:12925955-12926075 8.06e-01 120 chr2R:18398340-18398460 1.29e-01 28_[+1(3.20e-05)]_84 chrX:618660-618780 9.11e-01 120 chr2R:18811964-18812084 4.94e-01 120 chr3L:1139472-1139592 3.17e-01 120 chr2R:15477999-15478119 9.41e-01 120 chrX:21322800-21322920 5.55e-01 120 chr3R:5413060-5413180 9.07e-02 120 chr2L:7635263-7635383 9.81e-01 120 chr3R:22121336-22121456 4.98e-01 120 chr3R:31169113-31169233 7.34e-01 120 chr3R:14300065-14300185 2.69e-01 120 chrX:17582794-17582914 1.14e-01 120 chr3R:29089835-29089955 9.71e-01 120 chr2R:16610083-16610203 1.44e-01 36_[+4(1.99e-05)]_76 chrX:21375742-21375862 2.84e-03 7_[+2(1.98e-05)]_33_[+1(3.20e-05)]_\ 64 chr3L:16969728-16969848 2.39e-03 71_[+2(2.58e-05)]_41 chr2L:5043897-5044017 2.37e-01 120 chr3R:25123356-25123476 1.11e-02 110_[+4(7.52e-06)]_2 chr3R:25168353-25168473 4.95e-01 120 chr3R:28677027-28677147 8.18e-01 120 chr2R:14217045-14217165 4.23e-01 120 chr2L:12369686-12369806 6.56e-01 120 chr2R:18172050-18172170 2.04e-01 120 chr2R:16833025-16833145 8.90e-03 104_[+1(3.20e-05)]_8 chr2R:9834975-9835095 1.09e-01 120 chr3R:10391039-10391159 6.64e-01 120 chr2L:4133129-4133249 6.83e-04 6_[+1(8.50e-05)]_12_[+2(1.72e-05)]_\ 86 chr3L:8445167-8445287 9.50e-01 120 chr3R:5015279-5015399 1.24e-02 120 chr2L:8350660-8350780 1.44e-01 120 chr2R:22657086-22657206 1.93e-02 18_[+5(8.79e-05)]_94 chr2R:11435253-11435373 6.06e-01 120 chr3R:4975374-4975494 2.18e-02 42_[+1(3.20e-05)]_70 chr3L:12271325-12271445 2.92e-01 120 chr3R:25027589-25027709 8.08e-01 120 chr2R:9881465-9881585 9.35e-01 120 chr3L:8526205-8526325 5.19e-01 120 chr3R:25281287-25281407 3.84e-01 120 chr2R:10854224-10854344 2.30e-01 120 chr2R:25011251-25011371 3.25e-03 39_[+4(1.99e-05)]_73 chr3L:15977708-15977828 9.08e-01 120 chr3L:11493647-11493767 6.52e-01 120 chr2R:17533764-17533884 7.16e-01 120 chr2L:7940830-7940950 3.03e-02 120 chrX:8542154-8542274 5.25e-01 120 chr2L:16647854-16647974 4.18e-01 120 chrX:20631282-20631402 4.32e-01 120 chr3R:26888396-26888516 8.62e-01 120 chr3L:6522867-6522987 9.94e-01 120 chrX:11427494-11427614 4.99e-01 120 chr3R:26172167-26172287 8.24e-01 120 chr2L:21037869-21037989 4.12e-03 6_[+2(1.72e-05)]_106 chr3R:16069416-16069536 1.02e-04 17_[+2(1.63e-06)]_71_[+1(8.50e-05)]_\ 16 chrX:9664545-9664665 9.99e-01 120 chr3L:3770968-3771088 1.48e-01 35_[+5(8.79e-05)]_77 chr2L:19796195-19796315 4.06e-02 45_[+4(7.52e-06)]_1_[+4(4.44e-05)]_\ 58 chr3L:22471798-22471918 4.15e-01 120 chrX:20507863-20507983 8.29e-03 15_[+5(2.64e-06)]_97 chr3L:10694067-10694187 6.92e-03 97_[+3(4.52e-06)]_15 chr2L:16275912-16276032 9.16e-01 120 chr3L:14195836-14195956 1.31e-01 120 chr2L:14394329-14394449 1.20e-01 120 chr3R:21350111-21350231 7.43e-01 120 chr3R:20555148-20555268 9.88e-01 120 chr2L:16251922-16252042 5.54e-01 120 chr3L:2489570-2489690 5.87e-01 120 chr3R:16834792-16834912 7.18e-03 73_[+3(4.52e-06)]_39 chr2L:1629671-1629791 9.60e-01 120 chrX:11807580-11807700 5.35e-01 120 chrX:6352271-6352391 6.58e-03 3_[+3(4.52e-06)]_109 chr3R:24809725-24809845 2.02e-02 95_[+4(6.44e-05)]_17 chr2L:18822971-18823091 1.12e-02 3_[+1(3.20e-05)]_1_[+1(3.20e-05)]_\ 100 chr2R:17748532-17748652 2.88e-02 120 chr2R:14577746-14577866 1.18e-01 120 chr3R:26937600-26937720 1.19e-01 120 chr3L:797094-797214 9.99e-01 120 chrX:2947635-2947755 9.49e-01 120 chr3L:8629149-8629269 9.33e-01 120 chr2R:21503266-21503386 5.80e-01 120 chrX:12470799-12470919 1.49e-01 120 chrX:20506051-20506171 2.98e-01 120 chr3R:21112545-21112665 1.24e-01 120 chr3L:5554499-5554619 3.02e-01 32_[+1(3.20e-05)]_80 chr3R:5686500-5686620 9.48e-01 120 chr3R:23176851-23176971 2.40e-03 22_[+4(6.44e-05)]_5_[+1(8.50e-05)]_\ 77 chr3L:14028583-14028703 1.16e-01 120 chr2L:13414973-13415093 1.62e-03 47_[+4(4.44e-05)]_12_[+4(7.52e-06)]_\ 45 chr3R:21161815-21161935 7.08e-01 120 chr2L:20881489-20881609 6.99e-01 120 chr3L:14555224-14555344 7.93e-01 120 chrX:15384058-15384178 6.23e-01 120 chr2L:21149255-21149375 7.92e-01 120 chr2L:4441005-4441125 9.71e-02 106_[+5(8.79e-05)]_6 chr3R:31134130-31134250 4.82e-02 57_[+3(2.46e-05)]_55 chrX:11570404-11570524 9.85e-01 120 chr2L:3472394-3472514 1.50e-02 71_[+3(4.52e-06)]_41 chr3L:3305584-3305704 1.23e-01 60_[+1(3.20e-05)]_52 chr3L:3165062-3165182 5.56e-01 120 chr3L:10206244-10206364 9.99e-01 120 chr2R:24593736-24593856 7.01e-01 120 chr3R:24010905-24011025 1.45e-01 120 chr3R:20555841-20555961 3.11e-02 112_[+1(3.20e-05)] chr3R:17680846-17680966 4.74e-01 120 chr2L:10468564-10468684 1.61e-01 120 chr2L:19191903-19192023 7.15e-04 48_[+2(1.63e-06)]_64 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************