******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/GATAd.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:8195622-8195742 1.0000 120 chr3L:8534505-8534625 1.0000 120 chr2L:20417729-20417849 1.0000 120 chr2L:1644497-1644617 1.0000 120 chr3L:16381653-16381773 1.0000 120 chr3R:19642803-19642923 1.0000 120 chr2L:2904442-2904562 1.0000 120 chr2L:10479948-10480068 1.0000 120 chrX:20166585-20166705 1.0000 120 chr2R:13239480-13239600 1.0000 120 chr3R:15857656-15857776 1.0000 120 chr3R:25760309-25760429 1.0000 120 chr2R:8572749-8572869 1.0000 120 chr2R:12425488-12425608 1.0000 120 chrX:2642473-2642593 1.0000 120 chrX:10728204-10728324 1.0000 120 chr3L:4543982-4544102 1.0000 120 chrX:5900791-5900911 1.0000 120 chr2R:22525205-22525325 1.0000 120 chr3R:24753550-24753670 1.0000 120 chrX:9658318-9658438 1.0000 120 chr3R:19643036-19643156 1.0000 120 chr2R:6143521-6143641 1.0000 120 chr3R:6678608-6678728 1.0000 120 chr3L:11252919-11253039 1.0000 120 chr3L:19268915-19269035 1.0000 120 chr2R:13509446-13509566 1.0000 120 chr2L:7954729-7954849 1.0000 120 chr2L:3030421-3030541 1.0000 120 chr2L:12093669-12093789 1.0000 120 chr3R:4379243-4379363 1.0000 120 chr3R:29076119-29076239 1.0000 120 chr3R:29087877-29087997 1.0000 120 chr3L:7528424-7528544 1.0000 120 chr3L:19633043-19633163 1.0000 120 chr3L:7792289-7792409 1.0000 120 chr2R:18653007-18653127 1.0000 120 chrX:4677577-4677697 1.0000 120 chr3R:14311225-14311345 1.0000 120 chr2R:24265363-24265483 1.0000 120 chrX:9319232-9319352 1.0000 120 chr3R:9675115-9675235 1.0000 120 chr3L:3251695-3251815 1.0000 120 chr2L:5294531-5294651 1.0000 120 chr3R:27092345-27092465 1.0000 120 chrX:8196255-8196375 1.0000 120 chr2L:18559127-18559247 1.0000 120 chr2L:5904682-5904802 1.0000 120 chr3R:28896600-28896720 1.0000 120 chr3L:17389041-17389161 1.0000 120 chr2R:1522483-1522603 1.0000 120 chr2R:11279629-11279749 1.0000 120 chr2L:5212534-5212654 1.0000 120 chr3R:27925025-27925145 1.0000 120 chr2R:23522607-23522727 1.0000 120 chr2R:16291370-16291490 1.0000 120 chrX:4678662-4678782 1.0000 120 chr3L:57216-57336 1.0000 120 chr3R:30015361-30015481 1.0000 120 chr2L:5084701-5084821 1.0000 120 chrX:14805881-14806001 1.0000 120 chr3L:5183116-5183236 1.0000 120 chr2L:7027127-7027247 1.0000 120 chr3L:13923953-13924073 1.0000 120 chr2R:11096395-11096515 1.0000 120 chr2R:17405081-17405201 1.0000 120 chrX:8152716-8152836 1.0000 120 chrX:4610567-4610687 1.0000 120 chrX:2317394-2317514 1.0000 120 chrX:13570394-13570514 1.0000 120 chr2R:22888936-22889056 1.0000 120 chrX:7102296-7102416 1.0000 120 chr3R:22518481-22518601 1.0000 120 chr3R:22468139-22468259 1.0000 120 chr3L:8702670-8702790 1.0000 120 chr2R:6786806-6786926 1.0000 120 chrX:22433030-22433150 1.0000 120 chrX:3053360-3053480 1.0000 120 chrX:17490025-17490145 1.0000 120 chr3L:17947567-17947687 1.0000 120 chr2L:3158632-3158752 1.0000 120 chrX:12760827-12760947 1.0000 120 chr2L:1987826-1987946 1.0000 120 chr2L:20823928-20824048 1.0000 120 chrX:8295387-8295507 1.0000 120 chr3L:17665193-17665313 1.0000 120 chr2L:11306232-11306352 1.0000 120 chr3L:9430250-9430370 1.0000 120 chr3L:14564547-14564667 1.0000 120 chr2R:10066601-10066721 1.0000 120 chrX:7710821-7710941 1.0000 120 chr2R:16178537-16178657 1.0000 120 chr2R:9092871-9092991 1.0000 120 chr2R:9915160-9915280 1.0000 120 chr3L:10858779-10858899 1.0000 120 chr2L:5907015-5907135 1.0000 120 chr2R:7886015-7886135 1.0000 120 chr3R:6350725-6350845 1.0000 120 chr2R:10429500-10429620 1.0000 120 chrX:3677626-3677746 1.0000 120 chr3L:8338954-8339074 1.0000 120 chr3R:4654658-4654778 1.0000 120 chrX:1033187-1033307 1.0000 120 chr3L:2599571-2599691 1.0000 120 chr3R:13841187-13841307 1.0000 120 chr2R:20836464-20836584 1.0000 120 chrX:6037347-6037467 1.0000 120 chr3R:30800530-30800650 1.0000 120 chr3R:23176847-23176967 1.0000 120 chrX:5689603-5689723 1.0000 120 chr2L:3341732-3341852 1.0000 120 chr3L:10331825-10331945 1.0000 120 chrX:10764379-10764499 1.0000 120 chr3R:31725618-31725738 1.0000 120 chr3R:24298540-24298660 1.0000 120 chr2R:20671075-20671195 1.0000 120 chr2L:8860010-8860130 1.0000 120 chr2L:20676002-20676122 1.0000 120 chrX:5671802-5671922 1.0000 120 chr2R:11202454-11202574 1.0000 120 chr3R:20784035-20784155 1.0000 120 chrX:13334962-13335082 1.0000 120 chrX:7301860-7301980 1.0000 120 chr2L:7376286-7376406 1.0000 120 chr3L:20649075-20649195 1.0000 120 chr2R:12475923-12476043 1.0000 120 chr3L:13015386-13015506 1.0000 120 chr2R:10048599-10048719 1.0000 120 chrX:16288592-16288712 1.0000 120 chr3R:27677263-27677383 1.0000 120 chr2L:7239443-7239563 1.0000 120 chr2L:12369695-12369815 1.0000 120 chr2L:13882038-13882158 1.0000 120 chr2L:3713191-3713311 1.0000 120 chrX:23013436-23013556 1.0000 120 chr3R:28330825-28330945 1.0000 120 chr3R:31793783-31793903 1.0000 120 chrX:15583004-15583124 1.0000 120 chr2R:18269772-18269892 1.0000 120 chrX:14233991-14234111 1.0000 120 chr2R:4012811-4012931 1.0000 120 chr3L:10328767-10328887 1.0000 120 chr3L:14756565-14756685 1.0000 120 chr3L:21196739-21196859 1.0000 120 chr3L:3246746-3246866 1.0000 120 chr3R:13840046-13840166 1.0000 120 chr3R:23888773-23888893 1.0000 120 chr2L:871621-871741 1.0000 120 chr3R:21273779-21273899 1.0000 120 chr2L:13955904-13956024 1.0000 120 chr3R:5100439-5100559 1.0000 120 chrX:3672792-3672912 1.0000 120 chr3L:18194462-18194582 1.0000 120 chr3R:22175769-22175889 1.0000 120 chr2R:23554533-23554653 1.0000 120 chr2R:14417000-14417120 1.0000 120 chr3R:21650304-21650424 1.0000 120 chr2R:18528835-18528955 1.0000 120 chrX:12463122-12463242 1.0000 120 chr3R:29725640-29725760 1.0000 120 chr2R:7916610-7916730 1.0000 120 chr3R:31698239-31698359 1.0000 120 chrX:10775855-10775975 1.0000 120 chr3R:30285411-30285531 1.0000 120 chr3L:17912537-17912657 1.0000 120 chr2L:8299299-8299419 1.0000 120 chr2R:10237853-10237973 1.0000 120 chr3L:18011859-18011979 1.0000 120 chr3L:8441391-8441511 1.0000 120 chrX:10387818-10387938 1.0000 120 chr3R:27131512-27131632 1.0000 120 chr2R:12532814-12532934 1.0000 120 chr3L:3247650-3247770 1.0000 120 chr3L:7867457-7867577 1.0000 120 chr2R:14075234-14075354 1.0000 120 chr2L:3705678-3705798 1.0000 120 chr2L:20681963-20682083 1.0000 120 chr3R:29763313-29763433 1.0000 120 chr3R:12350633-12350753 1.0000 120 chr3R:29869215-29869335 1.0000 120 chr3R:10696488-10696608 1.0000 120 chr2R:17625612-17625732 1.0000 120 chr2L:3813396-3813516 1.0000 120 chr3R:14007010-14007130 1.0000 120 chr3R:18448452-18448572 1.0000 120 chr3R:20588568-20588688 1.0000 120 chr2R:19669791-19669911 1.0000 120 chr3L:19575733-19575853 1.0000 120 chr3R:19858444-19858564 1.0000 120 chr3R:21499651-21499771 1.0000 120 chr3L:15260703-15260823 1.0000 120 chrX:10584626-10584746 1.0000 120 chr3R:9251048-9251168 1.0000 120 chrX:6344134-6344254 1.0000 120 chr3R:29200208-29200328 1.0000 120 chr2L:15264693-15264813 1.0000 120 chr2R:9308469-9308589 1.0000 120 chr3R:23149242-23149362 1.0000 120 chr2R:18268742-18268862 1.0000 120 chr3L:17912737-17912857 1.0000 120 chr3R:22193680-22193800 1.0000 120 chrX:9356314-9356434 1.0000 120 chr3R:19314482-19314602 1.0000 120 chr3R:18298303-18298423 1.0000 120 chr2L:2924401-2924521 1.0000 120 chr3L:14036885-14037005 1.0000 120 chr2R:24174565-24174685 1.0000 120 chrX:21065039-21065159 1.0000 120 chr3L:14977896-14978016 1.0000 120 chr3L:12056577-12056697 1.0000 120 chr3L:7614444-7614564 1.0000 120 chrX:6020344-6020464 1.0000 120 chr3L:4186849-4186969 1.0000 120 chr2L:14386570-14386690 1.0000 120 chr2R:13467005-13467125 1.0000 120 chrX:3041175-3041295 1.0000 120 chr2R:24531515-24531635 1.0000 120 chr3L:21253843-21253963 1.0000 120 chr3L:8672727-8672847 1.0000 120 chr2L:1150637-1150757 1.0000 120 chr3R:30261977-30262097 1.0000 120 chr2R:15565343-15565463 1.0000 120 chr3R:19286712-19286832 1.0000 120 chr2R:21202313-21202433 1.0000 120 chrX:2146054-2146174 1.0000 120 chr3R:23363624-23363744 1.0000 120 chr2L:18968758-18968878 1.0000 120 chrX:13094318-13094438 1.0000 120 chrX:14839828-14839948 1.0000 120 chr2R:8901321-8901441 1.0000 120 chr2R:7768122-7768242 1.0000 120 chr2L:13371002-13371122 1.0000 120 chr3L:14762398-14762518 1.0000 120 chr3R:21941551-21941671 1.0000 120 chr3L:4825708-4825828 1.0000 120 chr3L:21891444-21891564 1.0000 120 chr2R:23994964-23995084 1.0000 120 chr3L:3240993-3241113 1.0000 120 chr2R:23523697-23523817 1.0000 120 chr3R:23915125-23915245 1.0000 120 chrX:16296559-16296679 1.0000 120 chr2L:1884398-1884518 1.0000 120 chr3R:5834098-5834218 1.0000 120 chr2R:8322024-8322144 1.0000 120 chr3R:27131711-27131831 1.0000 120 chr2R:22317492-22317612 1.0000 120 chrX:20501169-20501289 1.0000 120 chr2L:439434-439554 1.0000 120 chr2L:11155278-11155398 1.0000 120 chr3R:30336219-30336339 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_GATAd/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/GATAd.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.3 C 0.198 G 0.196 T 0.307 Background letter frequencies (from file dataset with add-one prior applied): A 0.3 C 0.198 G 0.196 T 0.307 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RNCAGCTG MEME-1 width = 8 sites = 63 llr = 479 E-value = 5.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif RNCAGCTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 62:a::2: pos.-specific C :2a::a12 probability G 34::a:18 matrix T 12::::5: bits 2.4 * ** 2.1 * ** 1.9 * ** 1.6 * ** * Relative 1.4 **** * Entropy 1.2 **** * (11.0 bits) 0.9 **** * 0.7 **** * 0.5 * **** * 0.2 ****** * 0.0 -------- Multilevel AGCAGCTG consensus GA A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNCAGCTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8295387-8295507 105 8.16e-06 ccagtagcgc agcagctg aaagagtg chr2L:20823928-20824048 66 8.16e-06 TTTCGAGATA AGCAGCTG GAAAGGGACG chr3L:21196739-21196859 49 2.17e-05 GTTGCCAAAC ACCAGCTG GCAGCCATTC chrX:10764379-10764499 61 2.17e-05 TGATGGTGTG ACCAGCTG TGTTTTGATG chr2R:11096395-11096515 97 2.17e-05 ATTGTGATCC ACCAGCTG TTCAAACGAG chr3R:30015361-30015481 16 2.17e-05 TTCAAAAACT ACCAGCTG CCTGTGTTGA chr3L:15260703-15260823 55 5.80e-05 GGAATGATAA AGCAGCGG GGCTTACATA chr2L:8860010-8860130 105 5.80e-05 ACCCCGAAAC AGCAGCCG TCGAATCA chr3R:31725618-31725738 108 5.80e-05 GGTGTGAGTG AGCAGCGG ATGTC chr2R:20836464-20836584 75 5.80e-05 GCTCTTCTGC GCCAGCTG TTCCGGTAGC chr3R:13841187-13841307 112 5.80e-05 CCAATTGCGG GCCAGCTG T chr2L:5907015-5907135 85 5.80e-05 GGAAAATGTG AACAGCTG ATACCACTGG chr3R:22468139-22468259 13 5.80e-05 GATTGATAAG AACAGCTG TAAGTAAACG chr3R:22518481-22518601 108 5.80e-05 GTTGGCAGCG AGCAGCCG CGTTG chrX:14805881-14806001 98 5.80e-05 GCAATGCACT GCCAGCTG ATTCAATACC chr2R:11279629-11279749 67 5.80e-05 CGAAAGTGTG GCCAGCTG CAGTGACACG chr2L:12093669-12093789 92 5.80e-05 GGTATGCACC AGCAGCAG ATGAACGGTC chr3L:18011859-18011979 53 7.08e-05 GGGGAAGTTC ATCAGCTG TAATCAAAAT chr3L:17912537-17912657 37 7.08e-05 TCCGCAAATA ATCAGCTG ATCCAAAATA chrX:9319232-9319352 92 7.08e-05 TCACTGGAAC ATCAGCTG TGCGCACCAA chr3L:4543982-4544102 41 7.08e-05 TTGTTTGCCT ATCAGCTG CTGTCACCGC chr2R:12425488-12425608 82 7.08e-05 CAACGTCGTC ATCAGCTG TCCAACAAGC chr3R:23149242-23149362 86 9.10e-05 AGGGCAGGCA GGCAGCCG GGGCATTGTC chrX:14233991-14234111 78 9.10e-05 AGTTGGAGAT GACAGCTG GAGGTGGCAA chr2R:18269772-18269892 16 9.10e-05 CCAGCCAGTT GGCAGCAG GCCAGGATGG chr3L:17389041-17389161 15 9.10e-05 TCACCTGGGC GACAGCTG TTAACACACG chrX:2317394-2317514 35 1.18e-04 acactcaATT GTCAGCTG TTATCAGTGC chr3L:19268915-19269035 17 1.18e-04 TGAATGCTGA ACCAGCGG GACAAATCGG chr3R:29087877-29087997 84 1.26e-04 TATCATGAGT AGCAGCTC AGCCTCTTGC chrX:16296559-16296679 74 1.67e-04 GGCCATCGCT AACAGCAG CGATAACAGC chr3L:8672727-8672847 76 1.67e-04 TGCATTTGCA AACAGCGG ATAGCTCAAA chr3R:19858444-19858564 58 1.67e-04 AGCCAAAGCA AACAGCAG TTGGGTAAAT chrX:5671802-5671922 24 1.67e-04 GGACCACTGT AACAGCAG CCTTGCCAGA chr3L:10858779-10858899 56 1.67e-04 ATAAACTGAT AACAGCGG CGAAAGAGAC chr3L:17665193-17665313 37 1.67e-04 CCCAACCCCC GCCAGCCG ACTTGTTTTT chr2L:18559127-18559247 75 1.67e-04 CCGCAAGATC AACAGCAG AAGATACGAC chr3L:3251695-3251815 96 1.67e-04 TGACAAGAGA AACAGCAG GAGAAGCGAC chr2R:24265363-24265483 5 1.67e-04 GCTT AACAGCGG GCTATAGTTT chr2R:24531515-24531635 34 2.01e-04 TTCAAGCACT GGCAGCTC CACCGATATA chr2R:9092871-9092991 107 2.01e-04 GCCTGTTCTT ATCAGCCG AAATAT chr2R:6786806-6786926 107 2.01e-04 TTGGCACCTT ATCAGCAG ATTATT chr3L:16381653-16381773 47 2.01e-04 GTCCACACTT ATCAGCAG CCCTTATCAG chr3R:20784035-20784155 108 2.36e-04 TTCTCAACAC TGCAGCTG CACGC chr3L:5183116-5183236 80 2.55e-04 AGAGGGCCGG GTCAGCAG ACTTAATCAG chr2R:23522607-23522727 110 2.55e-04 TTGCGAATTC GTCAGCCG ATT chr2R:13467005-13467125 106 2.92e-04 TTTTCTAGAT AACAGCTC TATGAAA chr3L:12056577-12056697 16 2.92e-04 TTCCGTTTCC AGCAGCGC CGTCtctcta chr2R:12475923-12476043 65 2.92e-04 ATATTCATTC GCCAGCTC CACTCGCACC chrX:3053360-3053480 105 2.92e-04 TTGAATGTGA AGCAGCGC CATTGCAC chr2R:16291370-16291490 92 3.02e-04 CGCACAACGC CGCAGCTG ATTGTGTTTT chr3L:17947567-17947687 54 3.24e-04 GCCGACTGCT ATCAGCTC GGCCGACTGC chr2L:3030421-3030541 70 3.44e-04 AAAACAAGTT GGCAGCCC ACTTTACACG chrX:20166585-20166705 87 3.44e-04 TCTGCCGGGT GGCAGCAC TGCTACGTAT chr3R:27925025-27925145 13 3.47e-04 TATCTGTGGC GGCGGCTG TAGCTTTCGT chr2R:18653007-18653127 33 3.47e-04 CGAGCGGGAC GGCGGCTG GAGCAACACG chr2L:18968758-18968878 24 4.06e-04 CCGCGGCTGG TGCAGCCG CCTATCGATA chr3L:7867457-7867577 41 4.06e-04 ctctTTTTGG TGCAGCCG GCAGAATGTA chrX:10775855-10775975 38 4.06e-04 CGTCTTGCCT TACAGCTG CGAAACGGAC chr3L:3246746-3246866 24 4.06e-04 TAAACAATTT TGCAGCGG CACTCCCCCA chr3L:8338954-8339074 57 4.06e-04 GATATAGTTT ACCAGCAC TGTTTAAAAA chr2L:7027127-7027247 31 4.06e-04 TACTGGCCCA ACCAGCAC TGCGCCAGAA chr2R:9915160-9915280 13 5.15e-04 TTCAAATATG CACAGCTG ATGCAGCCCT chr2R:15565343-15565463 76 6.20e-04 GGTGGGAGTG GGCGGCAG GTTGTTGATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNCAGCTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8295387-8295507 8.2e-06 104_[+1]_8 chr2L:20823928-20824048 8.2e-06 65_[+1]_47 chr3L:21196739-21196859 2.2e-05 48_[+1]_64 chrX:10764379-10764499 2.2e-05 60_[+1]_52 chr2R:11096395-11096515 2.2e-05 96_[+1]_16 chr3R:30015361-30015481 2.2e-05 15_[+1]_97 chr3L:15260703-15260823 5.8e-05 54_[+1]_58 chr2L:8860010-8860130 5.8e-05 104_[+1]_8 chr3R:31725618-31725738 5.8e-05 107_[+1]_5 chr2R:20836464-20836584 5.8e-05 74_[+1]_38 chr3R:13841187-13841307 5.8e-05 111_[+1]_1 chr2L:5907015-5907135 5.8e-05 84_[+1]_28 chr3R:22468139-22468259 5.8e-05 12_[+1]_100 chr3R:22518481-22518601 5.8e-05 107_[+1]_5 chrX:14805881-14806001 5.8e-05 97_[+1]_15 chr2R:11279629-11279749 5.8e-05 66_[+1]_46 chr2L:12093669-12093789 5.8e-05 91_[+1]_21 chr3L:18011859-18011979 7.1e-05 52_[+1]_60 chr3L:17912537-17912657 7.1e-05 36_[+1]_76 chrX:9319232-9319352 7.1e-05 91_[+1]_21 chr3L:4543982-4544102 7.1e-05 40_[+1]_72 chr2R:12425488-12425608 7.1e-05 81_[+1]_31 chr3R:23149242-23149362 9.1e-05 85_[+1]_27 chrX:14233991-14234111 9.1e-05 77_[+1]_35 chr2R:18269772-18269892 9.1e-05 15_[+1]_97 chr3L:17389041-17389161 9.1e-05 14_[+1]_98 chrX:2317394-2317514 0.00012 34_[+1]_78 chr3L:19268915-19269035 0.00012 16_[+1]_96 chr3R:29087877-29087997 0.00013 83_[+1]_29 chrX:16296559-16296679 0.00017 73_[+1]_39 chr3L:8672727-8672847 0.00017 75_[+1]_37 chr3R:19858444-19858564 0.00017 57_[+1]_55 chrX:5671802-5671922 0.00017 23_[+1]_89 chr3L:10858779-10858899 0.00017 55_[+1]_57 chr3L:17665193-17665313 0.00017 36_[+1]_76 chr2L:18559127-18559247 0.00017 74_[+1]_38 chr3L:3251695-3251815 0.00017 95_[+1]_17 chr2R:24265363-24265483 0.00017 4_[+1]_108 chr2R:24531515-24531635 0.0002 33_[+1]_79 chr2R:9092871-9092991 0.0002 106_[+1]_6 chr2R:6786806-6786926 0.0002 106_[+1]_6 chr3L:16381653-16381773 0.0002 46_[+1]_66 chr3R:20784035-20784155 0.00024 107_[+1]_5 chr3L:5183116-5183236 0.00025 79_[+1]_33 chr2R:23522607-23522727 0.00025 109_[+1]_3 chr2R:13467005-13467125 0.00029 105_[+1]_7 chr3L:12056577-12056697 0.00029 15_[+1]_97 chr2R:12475923-12476043 0.00029 64_[+1]_48 chrX:3053360-3053480 0.00029 104_[+1]_8 chr2R:16291370-16291490 0.0003 91_[+1]_21 chr3L:17947567-17947687 0.00032 53_[+1]_59 chr2L:3030421-3030541 0.00034 69_[+1]_43 chrX:20166585-20166705 0.00034 86_[+1]_26 chr3R:27925025-27925145 0.00035 12_[+1]_100 chr2R:18653007-18653127 0.00035 32_[+1]_80 chr2L:18968758-18968878 0.00041 23_[+1]_89 chr3L:7867457-7867577 0.00041 40_[+1]_72 chrX:10775855-10775975 0.00041 37_[+1]_75 chr3L:3246746-3246866 0.00041 23_[+1]_89 chr3L:8338954-8339074 0.00041 56_[+1]_56 chr2L:7027127-7027247 0.00041 30_[+1]_82 chr2R:9915160-9915280 0.00052 12_[+1]_100 chr2R:15565343-15565463 0.00062 75_[+1]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNCAGCTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RNCAGCTG width=8 seqs=63 chrX:8295387-8295507 ( 105) AGCAGCTG 1 chr2L:20823928-20824048 ( 66) AGCAGCTG 1 chr3L:21196739-21196859 ( 49) ACCAGCTG 1 chrX:10764379-10764499 ( 61) ACCAGCTG 1 chr2R:11096395-11096515 ( 97) ACCAGCTG 1 chr3R:30015361-30015481 ( 16) ACCAGCTG 1 chr3L:15260703-15260823 ( 55) AGCAGCGG 1 chr2L:8860010-8860130 ( 105) AGCAGCCG 1 chr3R:31725618-31725738 ( 108) AGCAGCGG 1 chr2R:20836464-20836584 ( 75) GCCAGCTG 1 chr3R:13841187-13841307 ( 112) GCCAGCTG 1 chr2L:5907015-5907135 ( 85) AACAGCTG 1 chr3R:22468139-22468259 ( 13) AACAGCTG 1 chr3R:22518481-22518601 ( 108) AGCAGCCG 1 chrX:14805881-14806001 ( 98) GCCAGCTG 1 chr2R:11279629-11279749 ( 67) GCCAGCTG 1 chr2L:12093669-12093789 ( 92) AGCAGCAG 1 chr3L:18011859-18011979 ( 53) ATCAGCTG 1 chr3L:17912537-17912657 ( 37) ATCAGCTG 1 chrX:9319232-9319352 ( 92) ATCAGCTG 1 chr3L:4543982-4544102 ( 41) ATCAGCTG 1 chr2R:12425488-12425608 ( 82) ATCAGCTG 1 chr3R:23149242-23149362 ( 86) GGCAGCCG 1 chrX:14233991-14234111 ( 78) GACAGCTG 1 chr2R:18269772-18269892 ( 16) GGCAGCAG 1 chr3L:17389041-17389161 ( 15) GACAGCTG 1 chrX:2317394-2317514 ( 35) GTCAGCTG 1 chr3L:19268915-19269035 ( 17) ACCAGCGG 1 chr3R:29087877-29087997 ( 84) AGCAGCTC 1 chrX:16296559-16296679 ( 74) AACAGCAG 1 chr3L:8672727-8672847 ( 76) AACAGCGG 1 chr3R:19858444-19858564 ( 58) AACAGCAG 1 chrX:5671802-5671922 ( 24) AACAGCAG 1 chr3L:10858779-10858899 ( 56) AACAGCGG 1 chr3L:17665193-17665313 ( 37) GCCAGCCG 1 chr2L:18559127-18559247 ( 75) AACAGCAG 1 chr3L:3251695-3251815 ( 96) AACAGCAG 1 chr2R:24265363-24265483 ( 5) AACAGCGG 1 chr2R:24531515-24531635 ( 34) GGCAGCTC 1 chr2R:9092871-9092991 ( 107) ATCAGCCG 1 chr2R:6786806-6786926 ( 107) ATCAGCAG 1 chr3L:16381653-16381773 ( 47) ATCAGCAG 1 chr3R:20784035-20784155 ( 108) TGCAGCTG 1 chr3L:5183116-5183236 ( 80) GTCAGCAG 1 chr2R:23522607-23522727 ( 110) GTCAGCCG 1 chr2R:13467005-13467125 ( 106) AACAGCTC 1 chr3L:12056577-12056697 ( 16) AGCAGCGC 1 chr2R:12475923-12476043 ( 65) GCCAGCTC 1 chrX:3053360-3053480 ( 105) AGCAGCGC 1 chr2R:16291370-16291490 ( 92) CGCAGCTG 1 chr3L:17947567-17947687 ( 54) ATCAGCTC 1 chr2L:3030421-3030541 ( 70) GGCAGCCC 1 chrX:20166585-20166705 ( 87) GGCAGCAC 1 chr3R:27925025-27925145 ( 13) GGCGGCTG 1 chr2R:18653007-18653127 ( 33) GGCGGCTG 1 chr2L:18968758-18968878 ( 24) TGCAGCCG 1 chr3L:7867457-7867577 ( 41) TGCAGCCG 1 chrX:10775855-10775975 ( 38) TACAGCTG 1 chr3L:3246746-3246866 ( 24) TGCAGCGG 1 chr3L:8338954-8339074 ( 57) ACCAGCAC 1 chr2L:7027127-7027247 ( 31) ACCAGCAC 1 chr2R:9915160-9915280 ( 13) CACAGCTG 1 chr2R:15565343-15565463 ( 76) GGCGGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNCAGCTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.52851 E= 5.7e-001 97 -264 62 -195 -33 6 90 -69 -1262 234 -1262 -1262 167 -1262 -204 -1262 -1262 -1262 235 -1262 -1262 234 -1262 -1262 -43 -47 -45 68 -1262 -18 208 -1262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNCAGCTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 5.7e-001 0.587302 0.031746 0.301587 0.079365 0.238095 0.206349 0.365079 0.190476 0.000000 1.000000 0.000000 0.000000 0.952381 0.000000 0.047619 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.222222 0.142857 0.142857 0.492063 0.000000 0.174603 0.825397 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNCAGCTG MEME-1 regular expression -------------------------------------------------------------------------------- [AG][GAC]CAGC[TA]G -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF GVGMGGSR MEME-2 width = 8 sites = 33 llr = 283 E-value = 1.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GVGMGGSR MEME-2 Description -------------------------------------------------------------------------------- Simplified A :4:3:::3 pos.-specific C :2:5::5: probability G a4a2aa55 matrix T :::::::2 bits 2.4 * ** 2.1 * * ** 1.9 * * ** 1.6 * * ** Relative 1.4 * * *** Entropy 1.2 * * *** (12.4 bits) 0.9 * * *** 0.7 * ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGCGGGG consensus G A CA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVGMGGSR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:8441391-8441511 8 4.42e-06 CACCGAC GGGCGGCG TAAAAATTCT chrX:7102296-7102416 13 4.42e-06 GTGGTGGGCA GGGCGGCG ATGTAACATC chr3L:5183116-5183236 49 4.42e-06 GTGGCAAAAG GGGCGGCG ACGGCATACG chr2R:9308469-9308589 76 1.34e-05 CAGGGCGAAA GCGCGGGG GCCACAGGCG chr3R:31725618-31725738 91 1.90e-05 TGTGCGCCTG GGGAGGGG GTGTGAGTGA chr3L:19268915-19269035 93 1.90e-05 GAGAGAGGGA GGGAGGGG AGCTCCCCTG chr2R:22525205-22525325 17 1.90e-05 TGGCGCAAAT GGGAGGGG GTGCACGAGC chr3R:4379243-4379363 106 2.79e-05 CTGCTTTCAT GGGCGGGA CGGAAAA chr3L:14756565-14756685 72 3.35e-05 GCGGGAATGC GGGGGGCG GAGCCACTCA chrX:10764379-10764499 105 3.35e-05 AAACGTTTGT GGGCGGCA ATTTTGAA chr2R:15565343-15565463 55 3.86e-05 GTCGAGTGTG GAGAGGGG GAGGGTGGGA chr2R:11279629-11279749 6 4.38e-05 TTCGC GAGAGGCG GAGGCAAATC chr3R:21499651-21499771 53 5.56e-05 TGTGCGATCA GAGCGGGA TGGATGGCTC chr2L:7376286-7376406 4 5.56e-05 TCT GAGGGGGG TTCTTATTTG chr2R:6786806-6786926 78 5.56e-05 GTGTGAGTTG GCGAGGGG GTGTGTATCT chr2R:24265363-24265483 89 5.56e-05 TATCGAAGTA GAGCGGGA AAATTCAAAT chr2R:18653007-18653127 24 5.56e-05 GGAGTGGTGC GAGCGGGA CGGCGGCTGG chrX:6037347-6037467 67 7.10e-05 ATGCACACTT GAGGGGCG ATAGTTGGCA chr3L:4543982-4544102 102 7.10e-05 AACCGGCGGT GCGAGGCG TTAGACGTCG chr2L:10479948-10480068 28 7.10e-05 TGAGATATCT GCGAGGCG CCAAATTGAA chrX:2317394-2317514 77 8.01e-05 ACTTGACAAA GCGGGGGG GCACAAAAAC chrX:9319232-9319352 63 8.01e-05 ACCGTGATAA GGGCGGCT ATTGCTGGGC chr2R:8901321-8901441 89 8.58e-05 AACTATCGCC GCGCGGCA CATCACTAGT chr3R:19858444-19858564 35 8.58e-05 CGGCTTTTTG GCGCGGCA GACAAAGCCA chr2L:3030421-3030541 101 9.09e-05 CACCCTGTAA GGGAGGGA CGTTCGTCAG chr3R:29725640-29725760 18 1.01e-04 TTGAATGCAC GAGCGGGT AACAAGTAAA chr2L:15264693-15264813 42 1.10e-04 CACCGGCCAA GAGCGGCT CTCTAGAGAG chr3L:17665193-17665313 74 1.10e-04 TCAGTCGAGC GAGCGGCT TGCTGATAAG chr3R:28330825-28330945 17 1.28e-04 gagtgaggga gagaggga gcgtgcgaga chr3L:7614444-7614564 105 1.57e-04 ATATCATACA GAGGGGGA CAGCAAGT chr3R:29200208-29200328 50 1.77e-04 AGCCCAAAAT GGGGGGCT TGGAGTCGAA chrX:10728204-10728324 97 1.89e-04 AACCGAAATC GAGAGGGT CTCGAGAATT chr3R:28896600-28896720 109 2.29e-04 GAAAACGCGG CGGCGGCG GCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVGMGGSR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:8441391-8441511 4.4e-06 7_[+2]_105 chrX:7102296-7102416 4.4e-06 12_[+2]_100 chr3L:5183116-5183236 4.4e-06 48_[+2]_64 chr2R:9308469-9308589 1.3e-05 75_[+2]_37 chr3R:31725618-31725738 1.9e-05 90_[+2]_22 chr3L:19268915-19269035 1.9e-05 92_[+2]_20 chr2R:22525205-22525325 1.9e-05 16_[+2]_96 chr3R:4379243-4379363 2.8e-05 105_[+2]_7 chr3L:14756565-14756685 3.4e-05 71_[+2]_41 chrX:10764379-10764499 3.4e-05 104_[+2]_8 chr2R:15565343-15565463 3.9e-05 54_[+2]_58 chr2R:11279629-11279749 4.4e-05 5_[+2]_107 chr3R:21499651-21499771 5.6e-05 52_[+2]_60 chr2L:7376286-7376406 5.6e-05 3_[+2]_109 chr2R:6786806-6786926 5.6e-05 77_[+2]_35 chr2R:24265363-24265483 5.6e-05 88_[+2]_24 chr2R:18653007-18653127 5.6e-05 23_[+2]_89 chrX:6037347-6037467 7.1e-05 66_[+2]_46 chr3L:4543982-4544102 7.1e-05 101_[+2]_11 chr2L:10479948-10480068 7.1e-05 27_[+2]_85 chrX:2317394-2317514 8e-05 76_[+2]_36 chrX:9319232-9319352 8e-05 62_[+2]_50 chr2R:8901321-8901441 8.6e-05 88_[+2]_24 chr3R:19858444-19858564 8.6e-05 34_[+2]_78 chr2L:3030421-3030541 9.1e-05 100_[+2]_12 chr3R:29725640-29725760 0.0001 17_[+2]_95 chr2L:15264693-15264813 0.00011 41_[+2]_71 chr3L:17665193-17665313 0.00011 73_[+2]_39 chr3R:28330825-28330945 0.00013 16_[+2]_96 chr3L:7614444-7614564 0.00016 104_[+2]_8 chr3R:29200208-29200328 0.00018 49_[+2]_63 chrX:10728204-10728324 0.00019 96_[+2]_16 chr3R:28896600-28896720 0.00023 108_[+2]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVGMGGSR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GVGMGGSR width=8 seqs=33 chr3L:8441391-8441511 ( 8) GGGCGGCG 1 chrX:7102296-7102416 ( 13) GGGCGGCG 1 chr3L:5183116-5183236 ( 49) GGGCGGCG 1 chr2R:9308469-9308589 ( 76) GCGCGGGG 1 chr3R:31725618-31725738 ( 91) GGGAGGGG 1 chr3L:19268915-19269035 ( 93) GGGAGGGG 1 chr2R:22525205-22525325 ( 17) GGGAGGGG 1 chr3R:4379243-4379363 ( 106) GGGCGGGA 1 chr3L:14756565-14756685 ( 72) GGGGGGCG 1 chrX:10764379-10764499 ( 105) GGGCGGCA 1 chr2R:15565343-15565463 ( 55) GAGAGGGG 1 chr2R:11279629-11279749 ( 6) GAGAGGCG 1 chr3R:21499651-21499771 ( 53) GAGCGGGA 1 chr2L:7376286-7376406 ( 4) GAGGGGGG 1 chr2R:6786806-6786926 ( 78) GCGAGGGG 1 chr2R:24265363-24265483 ( 89) GAGCGGGA 1 chr2R:18653007-18653127 ( 24) GAGCGGGA 1 chrX:6037347-6037467 ( 67) GAGGGGCG 1 chr3L:4543982-4544102 ( 102) GCGAGGCG 1 chr2L:10479948-10480068 ( 28) GCGAGGCG 1 chrX:2317394-2317514 ( 77) GCGGGGGG 1 chrX:9319232-9319352 ( 63) GGGCGGCT 1 chr2R:8901321-8901441 ( 89) GCGCGGCA 1 chr3R:19858444-19858564 ( 35) GCGCGGCA 1 chr2L:3030421-3030541 ( 101) GGGAGGGA 1 chr3R:29725640-29725760 ( 18) GAGCGGGT 1 chr2L:15264693-15264813 ( 42) GAGCGGCT 1 chr3L:17665193-17665313 ( 74) GAGCGGCT 1 chr3R:28330825-28330945 ( 17) GAGAGGGA 1 chr3L:7614444-7614564 ( 105) GAGGGGGA 1 chr3R:29200208-29200328 ( 50) GGGGGGCT 1 chrX:10728204-10728324 ( 97) GAGAGGGT 1 chr3R:28896600-28896720 ( 109) CGGCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVGMGGSR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 1.5e+002 -1169 -270 231 -1169 39 10 101 -1169 -1169 -1169 235 -1169 15 129 -11 -1169 -1169 -1169 235 -1169 -1169 -1169 235 -1169 -1169 129 140 -1169 1 -1169 140 -75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVGMGGSR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.5e+002 0.000000 0.030303 0.969697 0.000000 0.393939 0.212121 0.393939 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.484848 0.181818 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.484848 0.515152 0.000000 0.303030 0.000000 0.515152 0.181818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVGMGGSR MEME-2 regular expression -------------------------------------------------------------------------------- G[AGC]G[CA]GG[GC][GA] -------------------------------------------------------------------------------- Time 13.61 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCRCCA MEME-3 width = 8 sites = 6 llr = 70 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCRCCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::5::a pos.-specific C :a:a:aa: probability G a:a:5::: matrix T :::::::: bits 2.4 **** ** 2.1 **** ** 1.9 **** ** 1.6 **** *** Relative 1.4 **** *** Entropy 1.2 **** *** (16.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCACCA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCRCCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:12350633-12350753 12 3.47e-06 GATGGAATAA GCGCGCCA CCTACTGGCC chr2R:16178537-16178657 63 3.47e-06 ATTTTAAATA GCGCGCCA ATTTTTTAAG chrX:7710821-7710941 34 3.47e-06 ATTTTGAACG GCGCGCCA ATTAAGTGCT chrX:7102296-7102416 70 8.79e-06 GTCATCGATG GCGCACCA GCGAAGTGCC chrX:9319232-9319352 101 8.79e-06 CATCAGCTGT GCGCACCA ATGGGCAGCA chr2L:1644497-1644617 6 8.79e-06 CAACG GCGCACCA ATACACACGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCRCCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:12350633-12350753 3.5e-06 11_[+3]_101 chr2R:16178537-16178657 3.5e-06 62_[+3]_50 chrX:7710821-7710941 3.5e-06 33_[+3]_79 chrX:7102296-7102416 8.8e-06 69_[+3]_43 chrX:9319232-9319352 8.8e-06 100_[+3]_12 chr2L:1644497-1644617 8.8e-06 5_[+3]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCRCCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCRCCA width=8 seqs=6 chr3R:12350633-12350753 ( 12) GCGCGCCA 1 chr2R:16178537-16178657 ( 63) GCGCGCCA 1 chrX:7710821-7710941 ( 34) GCGCGCCA 1 chrX:7102296-7102416 ( 70) GCGCACCA 1 chrX:9319232-9319352 ( 101) GCGCACCA 1 chr2L:1644497-1644617 ( 6) GCGCACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCRCCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.6482 E= 1.0e+004 -923 -923 235 -923 -923 234 -923 -923 -923 -923 235 -923 -923 234 -923 -923 74 -923 135 -923 -923 234 -923 -923 -923 234 -923 -923 173 -923 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCRCCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCRCCA MEME-3 regular expression -------------------------------------------------------------------------------- GCGC[AG]CCA -------------------------------------------------------------------------------- Time 19.72 secs. ******************************************************************************** ******************************************************************************** MOTIF GYSCACTG MEME-4 width = 8 sites = 18 llr = 173 E-value = 8.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYSCACTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :2::a::: pos.-specific C :54a:7:: probability G a:6::3:a matrix T :3::::a: bits 2.4 * * * 2.1 * * * 1.9 * * * 1.6 * ** ** Relative 1.4 * ****** Entropy 1.2 * ****** (13.9 bits) 0.9 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCACTG consensus TC G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYSCACTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14233991-14234111 35 5.38e-06 ATTTTGATAA GCGCACTG CGCTACTGTT chr3L:16381653-16381773 64 5.38e-06 GCCCTTATCA GCGCACTG CTTACCTTAC chr3R:30261977-30262097 110 1.08e-05 TTCAATATGA GCCCACTG TTC chr2R:24531515-24531635 6 1.08e-05 TTCCC GCCCACTG AATGGAAACT chr3R:29725640-29725760 74 1.08e-05 TTCACTTTAG GCCCACTG CACTGTGGTT chr3L:4543982-4544102 82 1.08e-05 GCGCCTTCTG GCCCACTG ATAACCGGCG chrX:10584626-10584746 95 1.92e-05 CATCTCGAGT GTGCACTG TATTTTCTTC chr3R:31698239-31698359 22 1.92e-05 AGTGGGGTAG GTGCACTG CAAAAATAAA chr3R:22175769-22175889 46 1.92e-05 AATCCACAAG GTGCACTG AGATTGAGGT chr3L:10328767-10328887 12 1.92e-05 CAGTGGAAAT GTGCACTG AGAGAAAATA chr3R:31725618-31725738 59 2.45e-05 CTCTTATCAG GCGCAGTG TGCGTGCGTG chr2L:20823928-20824048 103 2.45e-05 TAGCGGCAAA GCGCAGTG TGCAACGACA chrX:1033187-1033307 50 3.83e-05 ATCGATACAA GCCCAGTG GTCGAGCACT chr2L:5907015-5907135 56 4.65e-05 TGGTCTTAAT GAGCACTG GCTGCGGTGG chr2L:871621-871741 90 6.30e-05 GGAATTTTAA GTGCAGTG GAGGTGAAAC chrX:5671802-5671922 15 6.30e-05 GATAGAGATG GACCACTG TAACAGCAGC chr3L:13923953-13924073 90 6.30e-05 TTTACTCGAC GACCACTG TATTTTTGGC chr2L:13371002-13371122 13 7.13e-05 GCTGTCAAAA GTCCAGTG CTCTAAAGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYSCACTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14233991-14234111 5.4e-06 34_[+4]_78 chr3L:16381653-16381773 5.4e-06 63_[+4]_49 chr3R:30261977-30262097 1.1e-05 109_[+4]_3 chr2R:24531515-24531635 1.1e-05 5_[+4]_107 chr3R:29725640-29725760 1.1e-05 73_[+4]_39 chr3L:4543982-4544102 1.1e-05 81_[+4]_31 chrX:10584626-10584746 1.9e-05 94_[+4]_18 chr3R:31698239-31698359 1.9e-05 21_[+4]_91 chr3R:22175769-22175889 1.9e-05 45_[+4]_67 chr3L:10328767-10328887 1.9e-05 11_[+4]_101 chr3R:31725618-31725738 2.4e-05 58_[+4]_54 chr2L:20823928-20824048 2.4e-05 102_[+4]_10 chrX:1033187-1033307 3.8e-05 49_[+4]_63 chr2L:5907015-5907135 4.6e-05 55_[+4]_57 chr2L:871621-871741 6.3e-05 89_[+4]_23 chrX:5671802-5671922 6.3e-05 14_[+4]_98 chr3L:13923953-13924073 6.3e-05 89_[+4]_23 chr2L:13371002-13371122 7.1e-05 12_[+4]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYSCACTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYSCACTG width=8 seqs=18 chrX:14233991-14234111 ( 35) GCGCACTG 1 chr3L:16381653-16381773 ( 64) GCGCACTG 1 chr3R:30261977-30262097 ( 110) GCCCACTG 1 chr2R:24531515-24531635 ( 6) GCCCACTG 1 chr3R:29725640-29725760 ( 74) GCCCACTG 1 chr3L:4543982-4544102 ( 82) GCCCACTG 1 chrX:10584626-10584746 ( 95) GTGCACTG 1 chr3R:31698239-31698359 ( 22) GTGCACTG 1 chr3R:22175769-22175889 ( 46) GTGCACTG 1 chr3L:10328767-10328887 ( 12) GTGCACTG 1 chr3R:31725618-31725738 ( 59) GCGCAGTG 1 chr2L:20823928-20824048 ( 103) GCGCAGTG 1 chrX:1033187-1033307 ( 50) GCCCAGTG 1 chr2L:5907015-5907135 ( 56) GAGCACTG 1 chr2L:871621-871741 ( 90) GTGCAGTG 1 chrX:5671802-5671922 ( 15) GACCACTG 1 chr3L:13923953-13924073 ( 90) GACCACTG 1 chr2L:13371002-13371122 ( 13) GTCCAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYSCACTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 8.8e+002 -1081 -1081 235 -1081 -85 134 -1081 12 -1081 117 151 -1081 -1081 234 -1081 -1081 174 -1081 -1081 -1081 -1081 187 51 -1081 -1081 -1081 -1081 170 -1081 -1081 235 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYSCACTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 8.8e+002 0.000000 0.000000 1.000000 0.000000 0.166667 0.500000 0.000000 0.333333 0.000000 0.444444 0.555556 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.722222 0.277778 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYSCACTG MEME-4 regular expression -------------------------------------------------------------------------------- G[CT][GC]CA[CG]TG -------------------------------------------------------------------------------- Time 25.82 secs. ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-5 width = 8 sites = 26 llr = 233 E-value = 6.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 2a:::a:8 pos.-specific C 2::a:::: probability G ::::a::1 matrix T 6:a:::a1 bits 2.4 ** 2.1 ** 1.9 ** 1.6 ****** Relative 1.4 ****** Entropy 1.2 ****** (13.0 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:18968758-18968878 34 3.03e-05 TGCAGCCGCC TATCGATA TATAGATAAG chr3L:14036885-14037005 56 3.03e-05 AATTTTGCAC TATCGATA AATGTCGCAA chr3R:10696488-10696608 14 3.03e-05 AATTCAAGCT TATCGATA AATAAAATAT chr3R:12350633-12350753 57 3.03e-05 AAGCGATAGG TATCGATA GCGAGGTCAG chr2R:4012811-4012931 17 3.03e-05 ttttctgcga tatcgata aatttaatga chr2R:20671075-20671195 73 3.03e-05 TCGATATCAC TATCGATA GACTTATCGA chrX:1033187-1033307 39 3.03e-05 GCGCCGATAC TATCGATA CAAGCCCAGT chr3R:30015361-30015481 64 3.03e-05 TAATACCGGC TATCGATA TTTATCGATT chr2R:11279629-11279749 39 3.03e-05 ATTTACCCCT TATCGATA AGACATTCAT chr2R:24265363-24265483 39 3.03e-05 ATGTAGTACT TATCGATA TCACGCAGTG chr3L:8534505-8534625 92 3.03e-05 GCATTTGcga tatcgata taaaatctac chr2R:22317492-22317612 76 4.99e-05 CTCTCTTACA CATCGATA TAACAACAAC chrX:9356314-9356434 21 4.99e-05 ACTCATCGCG CATCGATA TTTCGCCCAT chrX:12463122-12463242 11 4.99e-05 ATCGATAAGC CATCGATA GTCGACGGAT chr3R:6350725-6350845 113 4.99e-05 ACAAAAAACT CATCGATA chrX:7102296-7102416 27 4.99e-05 GGCGATGTAA CATCGATA GCTCGCCGTT chr2L:1150637-1150757 46 7.95e-05 GATGCGAACC AATCGATA TTTGCAGTAG chr3R:21273779-21273899 87 7.95e-05 CGATAGTCGG AATCGATA CGTAGCACCA chrX:23013436-23013556 47 7.95e-05 GGTGTCGATG AATCGATA TTTTGCACGT chr3L:2599571-2599691 39 7.95e-05 AGCTCGCTGC AATCGATA ACCGTGAAGT chr2R:10066601-10066721 15 7.95e-05 ATTGGAAAGA AATCGATA AATGTATATT chr2L:3813396-3813516 14 1.30e-04 ACCGATAACT TATCGATG TCTGTGAGCC chr2R:10237853-10237973 81 1.30e-04 TATACTAAAA TATCGATT TATGGAAGTT chr2R:23554533-23554653 11 1.30e-04 ACTATGCAGA TATCGATG TTTCTGTGTG chrX:15583004-15583124 99 1.30e-04 GATTATTTTG TATCGATT ATTTTGTAGC chr3R:24753550-24753670 68 1.30e-04 ACACTGAGGA TATCGATT GGTGGTGTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:18968758-18968878 3e-05 33_[+5]_79 chr3L:14036885-14037005 3e-05 55_[+5]_57 chr3R:10696488-10696608 3e-05 13_[+5]_99 chr3R:12350633-12350753 3e-05 56_[+5]_56 chr2R:4012811-4012931 3e-05 16_[+5]_96 chr2R:20671075-20671195 3e-05 72_[+5]_40 chrX:1033187-1033307 3e-05 38_[+5]_74 chr3R:30015361-30015481 3e-05 63_[+5]_49 chr2R:11279629-11279749 3e-05 38_[+5]_74 chr2R:24265363-24265483 3e-05 38_[+5]_74 chr3L:8534505-8534625 3e-05 91_[+5]_21 chr2R:22317492-22317612 5e-05 75_[+5]_37 chrX:9356314-9356434 5e-05 20_[+5]_92 chrX:12463122-12463242 5e-05 10_[+5]_102 chr3R:6350725-6350845 5e-05 112_[+5] chrX:7102296-7102416 5e-05 26_[+5]_86 chr2L:1150637-1150757 7.9e-05 45_[+5]_67 chr3R:21273779-21273899 7.9e-05 86_[+5]_26 chrX:23013436-23013556 7.9e-05 46_[+5]_66 chr3L:2599571-2599691 7.9e-05 38_[+5]_74 chr2R:10066601-10066721 7.9e-05 14_[+5]_98 chr2L:3813396-3813516 0.00013 13_[+5]_99 chr2R:10237853-10237973 0.00013 80_[+5]_32 chr2R:23554533-23554653 0.00013 10_[+5]_102 chrX:15583004-15583124 0.00013 98_[+5]_14 chr3R:24753550-24753670 0.00013 67_[+5]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=26 chr2L:18968758-18968878 ( 34) TATCGATA 1 chr3L:14036885-14037005 ( 56) TATCGATA 1 chr3R:10696488-10696608 ( 14) TATCGATA 1 chr3R:12350633-12350753 ( 57) TATCGATA 1 chr2R:4012811-4012931 ( 17) TATCGATA 1 chr2R:20671075-20671195 ( 73) TATCGATA 1 chrX:1033187-1033307 ( 39) TATCGATA 1 chr3R:30015361-30015481 ( 64) TATCGATA 1 chr2R:11279629-11279749 ( 39) TATCGATA 1 chr2R:24265363-24265483 ( 39) TATCGATA 1 chr3L:8534505-8534625 ( 92) TATCGATA 1 chr2R:22317492-22317612 ( 76) CATCGATA 1 chrX:9356314-9356434 ( 21) CATCGATA 1 chrX:12463122-12463242 ( 11) CATCGATA 1 chr3R:6350725-6350845 ( 113) CATCGATA 1 chrX:7102296-7102416 ( 27) CATCGATA 1 chr2L:1150637-1150757 ( 46) AATCGATA 1 chr3R:21273779-21273899 ( 87) AATCGATA 1 chrX:23013436-23013556 ( 47) AATCGATA 1 chr3L:2599571-2599691 ( 39) AATCGATA 1 chr2R:10066601-10066721 ( 15) AATCGATA 1 chr2L:3813396-3813516 ( 14) TATCGATG 1 chr2R:10237853-10237973 ( 81) TATCGATT 1 chr2R:23554533-23554653 ( 11) TATCGATG 1 chrX:15583004-15583124 ( 99) TATCGATT 1 chr3R:24753550-24753670 ( 68) TATCGATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6151 E= 6.9e+002 -64 -4 -1134 100 174 -1134 -1134 -1134 -1134 -1134 -1134 171 -1134 234 -1134 -1134 -1134 -1134 235 -1134 174 -1134 -1134 -1134 -1134 -1134 -1134 171 143 -1134 -135 -141 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 6.9e+002 0.192308 0.192308 0.000000 0.615385 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.807692 0.000000 0.076923 0.115385 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-5 regular expression -------------------------------------------------------------------------------- TATCGATA -------------------------------------------------------------------------------- Time 31.87 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8195622-8195742 4.73e-02 120 chr3L:8534505-8534625 1.39e-01 91_[+5(3.03e-05)]_13_[+5(7.95e-05)] chr2L:20417729-20417849 2.15e-01 120 chr2L:1644497-1644617 4.94e-03 5_[+3(8.79e-06)]_107 chr3L:16381653-16381773 2.57e-03 21_[+4(1.92e-05)]_34_[+4(5.38e-06)]_\ 49 chr3R:19642803-19642923 9.53e-01 120 chr2L:2904442-2904562 2.58e-01 120 chr2L:10479948-10480068 7.64e-02 27_[+2(7.10e-05)]_85 chrX:20166585-20166705 2.85e-03 120 chr2R:13239480-13239600 3.42e-02 120 chr3R:15857656-15857776 2.85e-01 120 chr3R:25760309-25760429 3.66e-01 120 chr2R:8572749-8572869 7.21e-01 120 chr2R:12425488-12425608 6.73e-02 81_[+1(7.08e-05)]_31 chrX:2642473-2642593 3.91e-01 120 chrX:10728204-10728324 7.52e-02 120 chr3L:4543982-4544102 1.51e-04 40_[+1(7.08e-05)]_33_[+4(1.08e-05)]_\ 12_[+2(7.10e-05)]_11 chrX:5900791-5900911 6.84e-02 120 chr2R:22525205-22525325 4.10e-02 16_[+2(1.90e-05)]_96 chr3R:24753550-24753670 1.99e-01 120 chrX:9658318-9658438 1.73e-01 120 chr3R:19643036-19643156 4.36e-02 120 chr2R:6143521-6143641 1.00e+00 120 chr3R:6678608-6678728 4.12e-01 120 chr3L:11252919-11253039 6.99e-01 120 chr3L:19268915-19269035 2.29e-03 92_[+2(1.90e-05)]_20 chr2R:13509446-13509566 1.07e-01 120 chr2L:7954729-7954849 8.32e-01 120 chr2L:3030421-3030541 2.57e-03 100_[+2(9.09e-05)]_12 chr2L:12093669-12093789 2.52e-02 91_[+1(5.80e-05)]_21 chr3R:4379243-4379363 1.00e-02 105_[+2(2.79e-05)]_7 chr3R:29076119-29076239 4.20e-01 120 chr3R:29087877-29087997 4.45e-01 120 chr3L:7528424-7528544 9.15e-01 120 chr3L:19633043-19633163 5.74e-01 120 chr3L:7792289-7792409 6.25e-01 120 chr2R:18653007-18653127 1.69e-02 23_[+2(5.56e-05)]_89 chrX:4677577-4677697 1.48e-02 120 chr3R:14311225-14311345 8.95e-01 120 chr2R:24265363-24265483 4.11e-05 38_[+5(3.03e-05)]_42_[+2(5.56e-05)]_\ 24 chrX:9319232-9319352 9.75e-06 62_[+2(8.01e-05)]_21_[+1(7.08e-05)]_\ 1_[+3(8.79e-06)]_12 chr3R:9675115-9675235 7.96e-01 120 chr3L:3251695-3251815 9.68e-02 120 chr2L:5294531-5294651 8.38e-02 120 chr3R:27092345-27092465 9.69e-01 120 chrX:8196255-8196375 3.55e-01 120 chr2L:18559127-18559247 9.80e-02 120 chr2L:5904682-5904802 8.59e-01 120 chr3R:28896600-28896720 1.55e-01 120 chr3L:17389041-17389161 2.10e-02 14_[+1(9.10e-05)]_98 chr2R:1522483-1522603 1.02e-01 120 chr2R:11279629-11279749 3.49e-05 5_[+2(4.38e-05)]_7_[+1(7.08e-05)]_\ 10_[+5(3.03e-05)]_20_[+1(5.80e-05)]_46 chr2L:5212534-5212654 4.37e-01 120 chr3R:27925025-27925145 6.99e-02 120 chr2R:23522607-23522727 4.39e-01 120 chr2R:16291370-16291490 3.16e-01 120 chrX:4678662-4678782 1.17e-01 120 chr3L:57216-57336 5.41e-01 120 chr3R:30015361-30015481 7.39e-04 15_[+1(2.17e-05)]_40_[+5(3.03e-05)]_\ 49 chr2L:5084701-5084821 3.02e-01 120 chrX:14805881-14806001 3.84e-02 97_[+1(5.80e-05)]_15 chr3L:5183116-5183236 3.43e-03 48_[+2(4.42e-06)]_64 chr2L:7027127-7027247 1.33e-01 120 chr3L:13923953-13924073 1.53e-01 89_[+4(6.30e-05)]_23 chr2R:11096395-11096515 3.21e-02 96_[+1(2.17e-05)]_16 chr2R:17405081-17405201 6.43e-01 120 chrX:8152716-8152836 8.77e-01 120 chrX:4610567-4610687 4.31e-01 120 chrX:2317394-2317514 9.34e-03 76_[+2(8.01e-05)]_36 chrX:13570394-13570514 1.11e-01 120 chr2R:22888936-22889056 7.56e-01 120 chrX:7102296-7102416 1.05e-06 12_[+2(4.42e-06)]_6_[+5(4.99e-05)]_\ 35_[+3(8.79e-06)]_43 chr3R:22518481-22518601 3.80e-03 107_[+1(5.80e-05)]_5 chr3R:22468139-22468259 1.48e-01 12_[+1(5.80e-05)]_100 chr3L:8702670-8702790 7.52e-01 120 chr2R:6786806-6786926 4.54e-03 77_[+2(5.56e-05)]_35 chrX:22433030-22433150 1.00e+00 120 chrX:3053360-3053480 2.24e-01 120 chrX:17490025-17490145 4.44e-01 120 chr3L:17947567-17947687 9.41e-02 120 chr2L:3158632-3158752 3.18e-01 120 chrX:12760827-12760947 6.98e-01 120 chr2L:1987826-1987946 3.37e-01 120 chr2L:20823928-20824048 5.68e-05 65_[+1(8.16e-06)]_29_[+4(2.45e-05)]_\ 10 chrX:8295387-8295507 7.82e-04 104_[+1(8.16e-06)]_8 chr3L:17665193-17665313 6.56e-03 120 chr2L:11306232-11306352 8.63e-01 120 chr3L:9430250-9430370 6.62e-01 120 chr3L:14564547-14564667 3.53e-01 120 chr2R:10066601-10066721 4.72e-01 14_[+5(7.95e-05)]_98 chrX:7710821-7710941 8.68e-04 33_[+3(3.47e-06)]_79 chr2R:16178537-16178657 6.98e-03 62_[+3(3.47e-06)]_50 chr2R:9092871-9092991 2.81e-01 120 chr2R:9915160-9915280 9.50e-02 120 chr3L:10858779-10858899 2.55e-03 120 chr2L:5907015-5907135 4.10e-03 55_[+4(4.65e-05)]_21_[+1(5.80e-05)]_\ 28 chr2R:7886015-7886135 6.54e-01 120 chr3R:6350725-6350845 1.71e-01 112_[+5(4.99e-05)] chr2R:10429500-10429620 9.25e-01 120 chrX:3677626-3677746 8.52e-01 120 chr3L:8338954-8339074 1.68e-02 120 chr3R:4654658-4654778 6.56e-01 120 chrX:1033187-1033307 3.53e-04 38_[+5(3.03e-05)]_3_[+4(3.83e-05)]_\ 63 chr3L:2599571-2599691 1.73e-02 38_[+5(7.95e-05)]_74 chr3R:13841187-13841307 3.08e-03 111_[+1(5.80e-05)]_1 chr2R:20836464-20836584 6.46e-02 74_[+1(5.80e-05)]_38 chrX:6037347-6037467 1.75e-03 66_[+2(7.10e-05)]_46 chr3R:30800530-30800650 2.73e-01 120 chr3R:23176847-23176967 1.69e-01 120 chrX:5689603-5689723 9.92e-01 120 chr2L:3341732-3341852 6.58e-01 120 chr3L:10331825-10331945 2.50e-01 120 chrX:10764379-10764499 2.41e-03 60_[+1(2.17e-05)]_36_[+2(3.35e-05)]_\ 8 chr3R:31725618-31725738 2.24e-05 58_[+4(2.45e-05)]_24_[+2(1.90e-05)]_\ 9_[+1(5.80e-05)]_5 chr3R:24298540-24298660 7.22e-02 120 chr2R:20671075-20671195 5.56e-02 60_[+5(3.03e-05)]_4_[+5(3.03e-05)]_\ 40 chr2L:8860010-8860130 2.53e-01 104_[+1(5.80e-05)]_8 chr2L:20676002-20676122 1.83e-01 120 chrX:5671802-5671922 4.89e-03 14_[+4(6.30e-05)]_98 chr2R:11202454-11202574 6.90e-02 120 chr3R:20784035-20784155 3.33e-01 120 chrX:13334962-13335082 3.94e-02 120 chrX:7301860-7301980 6.35e-01 120 chr2L:7376286-7376406 1.51e-01 3_[+2(5.56e-05)]_109 chr3L:20649075-20649195 1.00e+00 120 chr2R:12475923-12476043 1.22e-01 120 chr3L:13015386-13015506 7.81e-01 120 chr2R:10048599-10048719 1.48e-01 120 chrX:16288592-16288712 9.97e-01 120 chr3R:27677263-27677383 1.00e+00 120 chr2L:7239443-7239563 9.82e-01 120 chr2L:12369695-12369815 2.72e-01 120 chr2L:13882038-13882158 2.62e-01 120 chr2L:3713191-3713311 9.81e-01 120 chrX:23013436-23013556 1.58e-01 46_[+5(7.95e-05)]_66 chr3R:28330825-28330945 1.40e-01 120 chr3R:31793783-31793903 8.27e-01 120 chrX:15583004-15583124 3.45e-01 120 chr2R:18269772-18269892 9.29e-02 15_[+1(9.10e-05)]_97 chrX:14233991-14234111 3.91e-04 34_[+4(5.38e-06)]_35_[+1(9.10e-05)]_\ 35 chr2R:4012811-4012931 3.45e-02 16_[+5(3.03e-05)]_96 chr3L:10328767-10328887 6.52e-02 11_[+4(1.92e-05)]_101 chr3L:14756565-14756685 6.13e-02 71_[+2(3.35e-05)]_41 chr3L:21196739-21196859 4.53e-03 48_[+1(2.17e-05)]_64 chr3L:3246746-3246866 2.03e-02 120 chr3R:13840046-13840166 7.00e-01 120 chr3R:23888773-23888893 8.41e-01 120 chr2L:871621-871741 1.47e-01 89_[+4(6.30e-05)]_23 chr3R:21273779-21273899 2.61e-02 73_[+5(7.95e-05)]_5_[+5(7.95e-05)]_\ 26 chr2L:13955904-13956024 9.87e-01 120 chr3R:5100439-5100559 8.05e-01 120 chrX:3672792-3672912 5.65e-01 120 chr3L:18194462-18194582 3.81e-01 120 chr3R:22175769-22175889 1.14e-01 45_[+4(1.92e-05)]_67 chr2R:23554533-23554653 5.12e-01 120 chr2R:14417000-14417120 7.82e-01 120 chr3R:21650304-21650424 1.00e+00 120 chr2R:18528835-18528955 5.96e-01 120 chrX:12463122-12463242 8.83e-02 10_[+5(4.99e-05)]_102 chr3R:29725640-29725760 2.13e-03 73_[+4(1.08e-05)]_39 chr2R:7916610-7916730 6.88e-01 120 chr3R:31698239-31698359 2.53e-02 21_[+4(1.92e-05)]_91 chrX:10775855-10775975 3.08e-01 120 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c27n10.farnam.hpc.yale.internal ********************************************************************************