******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Fer3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:1869009-1869129 1.0000 120 chr3R:26242575-26242695 1.0000 120 chr3L:16146671-16146791 1.0000 120 chr2R:15515769-15515889 1.0000 120 chr3R:10688954-10689074 1.0000 120 chr2L:3228817-3228937 1.0000 120 chr3L:17791640-17791760 1.0000 120 chr3R:8811046-8811166 1.0000 120 chr2L:4861647-4861767 1.0000 120 chr3L:3932900-3933020 1.0000 120 chrX:6439627-6439747 1.0000 120 chr3L:3381996-3382116 1.0000 120 chr2L:3880252-3880372 1.0000 120 chr3L:16885210-16885330 1.0000 120 chr2R:22661298-22661418 1.0000 120 chr3R:18438905-18439025 1.0000 120 chr3L:917331-917451 1.0000 120 chr3R:26333456-26333576 1.0000 120 chr3L:19216519-19216639 1.0000 120 chr2L:7778427-7778547 1.0000 120 chr3L:4603605-4603725 1.0000 120 chr3R:8318043-8318163 1.0000 120 chr3R:25630694-25630814 1.0000 120 chr3L:1258697-1258817 1.0000 120 chrX:13626048-13626168 1.0000 120 chr2R:18994157-18994277 1.0000 120 chr3L:15923501-15923621 1.0000 120 chr3L:11402422-11402542 1.0000 120 chr2L:7434925-7435045 1.0000 120 chr2L:18966960-18967080 1.0000 120 chr3L:7866654-7866774 1.0000 120 chrX:9202495-9202615 1.0000 120 chr2L:12644407-12644527 1.0000 120 chr3L:18786230-18786350 1.0000 120 chr3R:26105985-26106105 1.0000 120 chr2L:15179156-15179276 1.0000 120 chr2R:15846343-15846463 1.0000 120 chr3L:11285295-11285415 1.0000 120 chr2R:22677965-22678085 1.0000 120 chr3L:11785459-11785579 1.0000 120 chr3R:18895389-18895509 1.0000 120 chrX:11391642-11391762 1.0000 120 chrX:3282102-3282222 1.0000 120 chrX:11379296-11379416 1.0000 120 chr2L:3755263-3755383 1.0000 120 chr3R:10411861-10411981 1.0000 120 chrX:13109850-13109970 1.0000 120 chr2L:7492082-7492202 1.0000 120 chr2R:22062473-22062593 1.0000 120 chrX:22449407-22449527 1.0000 120 chrX:7691555-7691675 1.0000 120 chr3R:20555125-20555245 1.0000 120 chrX:17293504-17293624 1.0000 120 chr3L:15977712-15977832 1.0000 120 chr3R:9938615-9938735 1.0000 120 chr3R:22121365-22121485 1.0000 120 chrX:3399363-3399483 1.0000 120 chr2L:14141369-14141489 1.0000 120 chr2L:8894374-8894494 1.0000 120 chr2L:12542162-12542282 1.0000 120 chr3L:13478703-13478823 1.0000 120 chr3L:9424624-9424744 1.0000 120 chr2L:8255506-8255626 1.0000 120 chr3L:16697167-16697287 1.0000 120 chr3R:26494427-26494547 1.0000 120 chrX:13395871-13395991 1.0000 120 chr2L:18965776-18965896 1.0000 120 chr3R:24544436-24544556 1.0000 120 chrX:13817590-13817710 1.0000 120 chr3R:4311397-4311517 1.0000 120 chrX:14840632-14840752 1.0000 120 chr2R:12035161-12035281 1.0000 120 chr2R:16581758-16581878 1.0000 120 chr3R:27289793-27289913 1.0000 120 chr3R:22108415-22108535 1.0000 120 chrX:7706436-7706556 1.0000 120 chr3L:1139526-1139646 1.0000 120 chr2R:8670100-8670220 1.0000 120 chr2R:13935260-13935380 1.0000 120 chr2R:19127924-19128044 1.0000 120 chr3R:29651599-29651719 1.0000 120 chr3R:23969565-23969685 1.0000 120 chr2L:3323552-3323672 1.0000 120 chr3R:17526181-17526301 1.0000 120 chr2R:24139164-24139284 1.0000 120 chr2R:13909059-13909179 1.0000 120 chr2L:2729999-2730119 1.0000 120 chr2L:13512201-13512321 1.0000 120 chr3L:13912916-13913036 1.0000 120 chr2L:892578-892698 1.0000 120 chr2R:23615206-23615326 1.0000 120 chrX:18494285-18494405 1.0000 120 chr3R:12451553-12451673 1.0000 120 chr3R:28118254-28118374 1.0000 120 chr2L:2348630-2348750 1.0000 120 chr2L:9493447-9493567 1.0000 120 chr2R:10122616-10122736 1.0000 120 chr2R:14247582-14247702 1.0000 120 chr2L:8982729-8982849 1.0000 120 chrX:5095725-5095845 1.0000 120 chrX:19453311-19453431 1.0000 120 chr2R:15480278-15480398 1.0000 120 chr3R:26556078-26556198 1.0000 120 chr2R:17161018-17161138 1.0000 120 chrX:18004380-18004500 1.0000 120 chr2R:16849601-16849721 1.0000 120 chr3L:4521918-4522038 1.0000 120 chr2R:10854267-10854387 1.0000 120 chr2L:2872667-2872787 1.0000 120 chrX:11848696-11848816 1.0000 120 chr3R:19011076-19011196 1.0000 120 chr2L:19930207-19930327 1.0000 120 chr2L:16544642-16544762 1.0000 120 chr2L:22144279-22144399 1.0000 120 chrX:11081353-11081473 1.0000 120 chrX:18094855-18094975 1.0000 120 chr3R:26280520-26280640 1.0000 120 chr3L:2913430-2913550 1.0000 120 chrX:17696804-17696924 1.0000 120 chrX:11925335-11925455 1.0000 120 chr3R:23228796-23228916 1.0000 120 chrX:12937904-12938024 1.0000 120 chr3R:22447379-22447499 1.0000 120 chrX:4262826-4262946 1.0000 120 chr3R:23181162-23181282 1.0000 120 chr2R:6464938-6465058 1.0000 120 chr2R:17085658-17085778 1.0000 120 chr2R:9546498-9546618 1.0000 120 chr2L:20807747-20807867 1.0000 120 chr2R:13482190-13482310 1.0000 120 chr3R:24571830-24571950 1.0000 120 chr3L:14190120-14190240 1.0000 120 chr3L:8445135-8445255 1.0000 120 chr3L:2845294-2845414 1.0000 120 chr2L:11199194-11199314 1.0000 120 chr2R:12547618-12547738 1.0000 120 chr2R:14161287-14161407 1.0000 120 chr3L:12271434-12271554 1.0000 120 chr3R:28677034-28677154 1.0000 120 chr2R:6157349-6157469 1.0000 120 chr3R:8354529-8354649 1.0000 120 chr3R:27557132-27557252 1.0000 120 chr3L:630202-630322 1.0000 120 chrX:8542149-8542269 1.0000 120 chrX:14169204-14169324 1.0000 120 chr3R:14077154-14077274 1.0000 120 chr3L:8689850-8689970 1.0000 120 chr3L:797034-797154 1.0000 120 chr2L:7395905-7396025 1.0000 120 chr3R:31810295-31810415 1.0000 120 chr3L:15814173-15814293 1.0000 120 chr2R:11435175-11435295 1.0000 120 chrX:15120235-15120355 1.0000 120 chr3L:5554527-5554647 1.0000 120 chr2R:18171987-18172107 1.0000 120 chr2L:9564666-9564786 1.0000 120 chr2R:17469354-17469474 1.0000 120 chr3L:19071571-19071691 1.0000 120 chrX:10573643-10573763 1.0000 120 chrX:17125089-17125209 1.0000 120 chrX:16944098-16944218 1.0000 120 chr3L:9691284-9691404 1.0000 120 chr2L:4224263-4224383 1.0000 120 chr2R:24943230-24943350 1.0000 120 chrX:9120973-9121093 1.0000 120 chr3R:30325604-30325724 1.0000 120 chr2L:13882058-13882178 1.0000 120 chr2L:9943625-9943745 1.0000 120 chr3L:14335976-14336096 1.0000 120 chr2L:20715177-20715297 1.0000 120 chr3L:15549072-15549192 1.0000 120 chr3R:14095530-14095650 1.0000 120 chr2R:7077021-7077141 1.0000 120 chr2L:19059049-19059169 1.0000 120 chr2L:18150721-18150841 1.0000 120 chr3R:25275479-25275599 1.0000 120 chr2L:18377278-18377398 1.0000 120 chr3R:29891320-29891440 1.0000 120 chr2R:12727656-12727776 1.0000 120 chr3L:11580034-11580154 1.0000 120 chrX:10184818-10184938 1.0000 120 chr3R:9238007-9238127 1.0000 120 chr3R:17385446-17385566 1.0000 120 chr3R:26014401-26014521 1.0000 120 chr3L:9371051-9371171 1.0000 120 chrX:6657065-6657185 1.0000 120 chrX:1270771-1270891 1.0000 120 chrX:14679311-14679431 1.0000 120 chrX:9193722-9193842 1.0000 120 chr3R:10888614-10888734 1.0000 120 chrX:9352859-9352979 1.0000 120 chrX:3381105-3381225 1.0000 120 chr3R:15250636-15250756 1.0000 120 chr2L:21037847-21037967 1.0000 120 chr3R:26117781-26117901 1.0000 120 chr2R:7748179-7748299 1.0000 120 chrX:3019740-3019860 1.0000 120 chr2R:18883655-18883775 1.0000 120 chr2R:21018393-21018513 1.0000 120 chr3R:29068950-29069070 1.0000 120 chr2L:16647885-16648005 1.0000 120 chr2R:18289094-18289214 1.0000 120 chr2L:10428641-10428761 1.0000 120 chr3L:6189164-6189284 1.0000 120 chr2R:24657153-24657273 1.0000 120 chrX:12470659-12470779 1.0000 120 chr3L:22471744-22471864 1.0000 120 chr2R:19389460-19389580 1.0000 120 chr3L:511982-512102 1.0000 120 chr3L:8951175-8951295 1.0000 120 chrX:10600656-10600776 1.0000 120 chr3L:8629068-8629188 1.0000 120 chr3R:16355516-16355636 1.0000 120 chr3R:29859922-29860042 1.0000 120 chr3R:14755254-14755374 1.0000 120 chr2R:8002273-8002393 1.0000 120 chr3R:26172167-26172287 1.0000 120 chr3R:11661865-11661985 1.0000 120 chr2R:17848915-17849035 1.0000 120 chr3R:14357527-14357647 1.0000 120 chr3R:11809771-11809891 1.0000 120 chr3L:15999806-15999926 1.0000 120 chr3R:19165053-19165173 1.0000 120 chr3L:16202668-16202788 1.0000 120 chr2R:21017474-21017594 1.0000 120 chr3R:9370539-9370659 1.0000 120 chrX:21322750-21322870 1.0000 120 chr2L:10468581-10468701 1.0000 120 chr3L:13923448-13923568 1.0000 120 chr3L:9847543-9847663 1.0000 120 chr3L:16571533-16571653 1.0000 120 chr2L:12369680-12369800 1.0000 120 chr2L:20881469-20881589 1.0000 120 chr2L:10760722-10760842 1.0000 120 chr3L:10866768-10866888 1.0000 120 chr2R:14577750-14577870 1.0000 120 chr3L:15592692-15592812 1.0000 120 chr2R:18398323-18398443 1.0000 120 chr3L:12270006-12270126 1.0000 120 chr3R:24010964-24011084 1.0000 120 chr2R:15477979-15478099 1.0000 120 chr2R:21712046-21712166 1.0000 120 chr3L:15563072-15563192 1.0000 120 chr2R:12772767-12772887 1.0000 120 chrX:17330435-17330555 1.0000 120 chr2L:1629714-1629834 1.0000 120 chr2L:10143434-10143554 1.0000 120 chr2L:21371012-21371132 1.0000 120 chr3L:1578512-1578632 1.0000 120 chrX:5285946-5286066 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Fer3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Fer3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.355 C 0.15 G 0.147 T 0.348 Background letter frequencies (from file dataset with add-one prior applied): A 0.355 C 0.15 G 0.147 T 0.348 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RGYGGHGS MEME-1 width = 8 sites = 13 llr = 137 E-value = 4.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGYGGHGS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4::::2:: pos.-specific C ::3::3:5 probability G 6a2aa:a5 matrix T ::5::5:: bits 2.8 * ** * 2.5 * ** * 2.2 * ** * 1.9 * ** * Relative 1.7 * ** ** Entropy 1.4 ** ** ** (15.2 bits) 1.1 ** ** ** 0.8 ** ** ** 0.6 ***** ** 0.3 ******** 0.0 -------- Multilevel GGTGGTGG consensus A C C C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGYGGHGS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:21037847-21037967 30 4.59e-07 CACCAGCAGT GGCGGCGC TTGTTTGGTT chr3R:29891320-29891440 34 9.85e-07 GCAGTTTTCA GGTGGCGG CGTTGTAATT chr3L:22471744-22471864 75 4.03e-06 tatatatata GGTGGTGG TTAGGTAAAT chrX:13626048-13626168 9 4.03e-06 AAAAAATG GGTGGTGG TGAACCTTTG chr3L:511982-512102 47 5.51e-06 CTTTAATAGA GGTGGTGC TTTGCTATAT chrX:22449407-22449527 40 5.51e-06 GCAGCATAGT GGGGGCGC TATGAAATAT chrX:3282102-3282222 13 6.56e-06 TTGCGGGGGG GGGGGTGG TTATTAACCA chrX:13395871-13395991 106 8.18e-06 AACTCAACTT GGCGGAGC AAAAATG chr3R:16355516-16355636 5 1.51e-05 CAAA AGCGGTGG AACTTTTGGA chr2L:2729999-2730119 20 1.51e-05 GGCGCGATAC AGTGGCGC GTGTATCTAT chr2L:18150721-18150841 20 2.45e-05 CGATATTGGT AGTGGTGC GGCTGGGAGA chr3R:27289793-27289913 41 2.71e-05 AAATGTTTGT AGCGGAGG AATCGAGGGA chr2R:18289094-18289214 110 3.27e-05 CACTAAATAC AGTGGAGG AAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGYGGHGS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:21037847-21037967 4.6e-07 29_[+1]_83 chr3R:29891320-29891440 9.9e-07 33_[+1]_79 chr3L:22471744-22471864 4e-06 74_[+1]_38 chrX:13626048-13626168 4e-06 8_[+1]_104 chr3L:511982-512102 5.5e-06 46_[+1]_66 chrX:22449407-22449527 5.5e-06 39_[+1]_73 chrX:3282102-3282222 6.6e-06 12_[+1]_100 chrX:13395871-13395991 8.2e-06 105_[+1]_7 chr3R:16355516-16355636 1.5e-05 4_[+1]_108 chr2L:2729999-2730119 1.5e-05 19_[+1]_93 chr2L:18150721-18150841 2.5e-05 19_[+1]_93 chr3R:27289793-27289913 2.7e-05 40_[+1]_72 chr2R:18289094-18289214 3.3e-05 109_[+1]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGYGGHGS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGYGGHGS width=8 seqs=13 chr2L:21037847-21037967 ( 30) GGCGGCGC 1 chr3R:29891320-29891440 ( 34) GGTGGCGG 1 chr3L:22471744-22471864 ( 75) GGTGGTGG 1 chrX:13626048-13626168 ( 9) GGTGGTGG 1 chr3L:511982-512102 ( 47) GGTGGTGC 1 chrX:22449407-22449527 ( 40) GGGGGCGC 1 chrX:3282102-3282222 ( 13) GGGGGTGG 1 chrX:13395871-13395991 ( 106) GGCGGAGC 1 chr3R:16355516-16355636 ( 5) AGCGGTGG 1 chr2L:2729999-2730119 ( 20) AGTGGCGC 1 chr2L:18150721-18150841 ( 20) AGTGGTGC 1 chr3R:27289793-27289913 ( 41) AGCGGAGG 1 chr2R:18289094-18289214 ( 110) AGTGGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGYGGHGS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 4.0e+001 12 -1035 206 -1035 -1035 -1035 276 -1035 -1035 103 6 63 -1035 -1035 276 -1035 -1035 -1035 276 -1035 -62 103 -1035 41 -1035 -1035 276 -1035 -1035 162 187 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGYGGHGS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 4.0e+001 0.384615 0.000000 0.615385 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.307692 0.153846 0.538462 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.230769 0.307692 0.000000 0.461538 0.000000 0.000000 1.000000 0.000000 0.000000 0.461538 0.538462 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGYGGHGS MEME-1 regular expression -------------------------------------------------------------------------------- [GA]G[TC]GG[TCA]G[GC] -------------------------------------------------------------------------------- Time 9.35 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCGGGGG MEME-2 width = 8 sites = 2 llr = 29 E-value = 2.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGGGGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::a::::: probability G :a:aaaaa matrix T a::::::: bits 2.8 ******* 2.5 ******* 2.2 ******* 1.9 ******* Relative 1.7 ******** Entropy 1.4 ******** (20.8 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TGCGGGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGGGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:10143434-10143554 29 5.27e-07 TGGAACTTCC TGCGGGGG AACAGGAAAT chrX:3282102-3282222 4 5.27e-07 GGT TGCGGGGG GGGGGGTGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGGGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10143434-10143554 5.3e-07 28_[+2]_84 chrX:3282102-3282222 5.3e-07 3_[+2]_109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGGGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGGGGG width=8 seqs=2 chr2L:10143434-10143554 ( 29) TGCGGGGG 1 chrX:3282102-3282222 ( 4) TGCGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGGGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.9e+003 -765 -765 -765 152 -765 -765 276 -765 -765 273 -765 -765 -765 -765 276 -765 -765 -765 276 -765 -765 -765 276 -765 -765 -765 276 -765 -765 -765 276 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGGGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.9e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGGGG MEME-2 regular expression -------------------------------------------------------------------------------- TGCGGGGG -------------------------------------------------------------------------------- Time 15.62 secs. ******************************************************************************** ******************************************************************************** MOTIF GTACAGTG MEME-3 width = 8 sites = 6 llr = 71 E-value = 5.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTACAGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a:a::: pos.-specific C :::a:::: probability G a::::a:a matrix T :a::::a: bits 2.8 * * * * 2.5 * * * * 2.2 * * * * 1.9 * * * * Relative 1.7 ** * *** Entropy 1.4 ******** (17.1 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GTACAGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTACAGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:29859922-29860042 50 7.27e-06 CACCGTTTAA GTACAGTG CTCACTATTG chr2L:18150721-18150841 47 7.27e-06 AGCAGCGCAA GTACAGTG AAGCCTAAGC chr2R:6157349-6157469 6 7.27e-06 TTCAG GTACAGTG GTTCAAGTTT chr2R:12547618-12547738 30 7.27e-06 CACCGAAGGT GTACAGTG GAATTTCGTT chr2L:11199194-11199314 13 7.27e-06 CTCAATGTGG GTACAGTG CGTTTCATGG chr3L:13478703-13478823 2 7.27e-06 A GTACAGTG GGGATTCTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTACAGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29859922-29860042 7.3e-06 49_[+3]_63 chr2L:18150721-18150841 7.3e-06 46_[+3]_66 chr2R:6157349-6157469 7.3e-06 5_[+3]_107 chr2R:12547618-12547738 7.3e-06 29_[+3]_83 chr2L:11199194-11199314 7.3e-06 12_[+3]_100 chr3L:13478703-13478823 7.3e-06 1_[+3]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTACAGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTACAGTG width=8 seqs=6 chr3R:29859922-29860042 ( 50) GTACAGTG 1 chr2L:18150721-18150841 ( 47) GTACAGTG 1 chr2R:6157349-6157469 ( 6) GTACAGTG 1 chr2R:12547618-12547738 ( 30) GTACAGTG 1 chr2L:11199194-11199314 ( 13) GTACAGTG 1 chr3L:13478703-13478823 ( 2) GTACAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTACAGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8596 E= 5.3e+003 -923 -923 276 -923 -923 -923 -923 152 149 -923 -923 -923 -923 273 -923 -923 149 -923 -923 -923 -923 -923 276 -923 -923 -923 -923 152 -923 -923 276 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTACAGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 5.3e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTACAGTG MEME-3 regular expression -------------------------------------------------------------------------------- GTACAGTG -------------------------------------------------------------------------------- Time 21.88 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTCGGCG MEME-4 width = 8 sites = 2 llr = 29 E-value = 6.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTCGGCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:a::a: probability G a:::aa:a matrix T ::a::::: bits 2.8 ** ***** 2.5 ** ***** 2.2 ** ***** 1.9 ** ***** Relative 1.7 ******** Entropy 1.4 ******** (20.8 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCTCGGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCGGCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:15480278-15480398 97 5.48e-07 GATAAATAAC GCTCGGCG GCTTGTTGTG chr2L:2729999-2730119 6 5.48e-07 GCCCT GCTCGGCG CGATACAGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCGGCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15480278-15480398 5.5e-07 96_[+4]_16 chr2L:2729999-2730119 5.5e-07 5_[+4]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCGGCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTCGGCG width=8 seqs=2 chr2R:15480278-15480398 ( 97) GCTCGGCG 1 chr2L:2729999-2730119 ( 6) GCTCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCGGCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 6.6e+003 -765 -765 276 -765 -765 273 -765 -765 -765 -765 -765 152 -765 273 -765 -765 -765 -765 276 -765 -765 -765 276 -765 -765 273 -765 -765 -765 -765 276 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCGGCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.6e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCGGCG MEME-4 regular expression -------------------------------------------------------------------------------- GCTCGGCG -------------------------------------------------------------------------------- Time 28.14 secs. ******************************************************************************** ******************************************************************************** MOTIF CATNCGGC MEME-5 width = 8 sites = 9 llr = 98 E-value = 7.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CATNCGGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a22:::: pos.-specific C a::2a1:a probability G :::3:9a: matrix T ::82:::: bits 2.8 * * ** 2.5 * * ** 2.2 * **** 1.9 * **** Relative 1.7 * **** Entropy 1.4 ** **** (15.7 bits) 1.1 ** **** 0.8 *** **** 0.6 *** **** 0.3 ******** 0.0 -------- Multilevel CATGCGGC consensus AA sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATNCGGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:12369680-12369800 38 1.32e-06 TTGACGTCGC CATGCGGC TCATCGTGAA chr2L:8894374-8894494 86 1.32e-06 TCTAACTCTT CATGCGGC CAACTCAAAG chr3L:4521918-4522038 61 2.68e-06 TTGGCCTTGC CATCCGGC TCAACTGAAC chr2R:7748179-7748299 23 1.04e-05 GACTGTTCAG CATTCGGC ATTTGTGCAA chr2R:22677965-22678085 111 1.04e-05 CATATAGAAC CATACGGC CG chr3R:26242575-26242695 63 1.04e-05 TGTGCGATAA CATACGGC TTGAATTATA chr2R:6464938-6465058 108 1.17e-05 acaacacttt caaccggc aagcc chr3R:10888614-10888734 111 1.31e-05 CGTGAACCAA CATGCCGC TT chr3R:10688954-10689074 48 2.09e-05 GTCCAGTTAT CAATCGGC CAATAATTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATNCGGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:12369680-12369800 1.3e-06 37_[+5]_75 chr2L:8894374-8894494 1.3e-06 85_[+5]_27 chr3L:4521918-4522038 2.7e-06 60_[+5]_52 chr2R:7748179-7748299 1e-05 22_[+5]_90 chr2R:22677965-22678085 1e-05 110_[+5]_2 chr3R:26242575-26242695 1e-05 62_[+5]_50 chr2R:6464938-6465058 1.2e-05 107_[+5]_5 chr3R:10888614-10888734 1.3e-05 110_[+5]_2 chr3R:10688954-10689074 2.1e-05 47_[+5]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATNCGGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CATNCGGC width=8 seqs=9 chr2L:12369680-12369800 ( 38) CATGCGGC 1 chr2L:8894374-8894494 ( 86) CATGCGGC 1 chr3L:4521918-4522038 ( 61) CATCCGGC 1 chr2R:7748179-7748299 ( 23) CATTCGGC 1 chr2R:22677965-22678085 ( 111) CATACGGC 1 chr3R:26242575-26242695 ( 63) CATACGGC 1 chr2R:6464938-6465058 ( 108) CAACCGGC 1 chr3R:10888614-10888734 ( 111) CATGCCGC 1 chr3R:10688954-10689074 ( 48) CAATCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATNCGGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9173 E= 7.9e+003 -982 273 -982 -982 149 -982 -982 -982 -67 -982 -982 116 -67 56 118 -65 -982 273 -982 -982 -982 -43 259 -982 -982 -982 276 -982 -982 273 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATNCGGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 7.9e+003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.222222 0.000000 0.000000 0.777778 0.222222 0.222222 0.333333 0.222222 0.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATNCGGC MEME-5 regular expression -------------------------------------------------------------------------------- CA[TA][GACT]CGGC -------------------------------------------------------------------------------- Time 34.49 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1869009-1869129 9.62e-01 120 chr3R:26242575-26242695 4.33e-04 62_[+5(1.04e-05)]_50 chr3L:16146671-16146791 5.63e-01 120 chr2R:15515769-15515889 7.52e-01 120 chr3R:10688954-10689074 4.65e-02 47_[+5(2.09e-05)]_65 chr2L:3228817-3228937 3.19e-01 120 chr3L:17791640-17791760 9.99e-01 120 chr3R:8811046-8811166 9.73e-01 120 chr2L:4861647-4861767 6.81e-02 120 chr3L:3932900-3933020 3.43e-02 120 chrX:6439627-6439747 2.46e-01 120 chr3L:3381996-3382116 8.73e-01 120 chr2L:3880252-3880372 2.61e-01 120 chr3L:16885210-16885330 6.15e-01 120 chr2R:22661298-22661418 8.91e-01 120 chr3R:18438905-18439025 7.65e-01 120 chr3L:917331-917451 9.70e-01 120 chr3R:26333456-26333576 7.58e-01 120 chr3L:19216519-19216639 7.00e-01 120 chr2L:7778427-7778547 9.39e-01 120 chr3L:4603605-4603725 9.98e-01 120 chr3R:8318043-8318163 6.77e-02 120 chr3R:25630694-25630814 8.33e-01 120 chr3L:1258697-1258817 9.43e-01 120 chrX:13626048-13626168 8.01e-03 8_[+1(4.03e-06)]_104 chr2R:18994157-18994277 6.95e-01 120 chr3L:15923501-15923621 9.86e-01 120 chr3L:11402422-11402542 2.96e-01 120 chr2L:7434925-7435045 4.03e-02 120 chr2L:18966960-18967080 9.92e-01 120 chr3L:7866654-7866774 9.94e-01 120 chrX:9202495-9202615 9.58e-01 120 chr2L:12644407-12644527 9.35e-01 120 chr3L:18786230-18786350 1.20e-01 120 chr3R:26105985-26106105 3.71e-01 27_[+3(6.09e-05)]_85 chr2L:15179156-15179276 1.00e+00 120 chr2R:15846343-15846463 9.54e-02 120 chr3L:11285295-11285415 1.00e+00 120 chr2R:22677965-22678085 7.78e-02 110_[+5(1.04e-05)]_2 chr3L:11785459-11785579 2.31e-01 120 chr3R:18895389-18895509 5.91e-02 120 chrX:11391642-11391762 9.16e-01 120 chrX:3282102-3282222 1.08e-05 3_[+2(5.27e-07)]_1_[+1(6.56e-06)]_\ 100 chrX:11379296-11379416 9.72e-01 120 chr2L:3755263-3755383 1.00e+00 120 chr3R:10411861-10411981 5.32e-01 120 chrX:13109850-13109970 9.14e-01 120 chr2L:7492082-7492202 1.88e-01 120 chr2R:22062473-22062593 9.76e-01 120 chrX:22449407-22449527 1.51e-04 39_[+1(5.51e-06)]_73 chrX:7691555-7691675 1.36e-02 21_[+3(6.09e-05)]_91 chr3R:20555125-20555245 8.53e-01 120 chrX:17293504-17293624 9.95e-01 120 chr3L:15977712-15977832 9.99e-01 120 chr3R:9938615-9938735 8.25e-01 120 chr3R:22121365-22121485 3.78e-01 99_[+5(9.23e-05)]_13 chrX:3399363-3399483 5.21e-01 120 chr2L:14141369-14141489 1.75e-01 120 chr2L:8894374-8894494 2.03e-02 85_[+5(1.32e-06)]_27 chr2L:12542162-12542282 8.26e-01 120 chr3L:13478703-13478823 5.80e-03 1_[+3(7.27e-06)]_111 chr3L:9424624-9424744 7.35e-01 120 chr2L:8255506-8255626 9.95e-01 120 chr3L:16697167-16697287 9.97e-01 120 chr3R:26494427-26494547 9.07e-01 120 chrX:13395871-13395991 4.62e-03 105_[+1(8.18e-06)]_7 chr2L:18965776-18965896 9.68e-01 120 chr3R:24544436-24544556 2.35e-01 120 chrX:13817590-13817710 8.99e-01 120 chr3R:4311397-4311517 9.01e-01 120 chrX:14840632-14840752 1.00e+00 120 chr2R:12035161-12035281 6.24e-01 120 chr2R:16581758-16581878 9.98e-01 120 chr3R:27289793-27289913 6.64e-03 40_[+1(2.71e-05)]_72 chr3R:22108415-22108535 6.00e-01 120 chrX:7706436-7706556 7.98e-01 120 chr3L:1139526-1139646 4.71e-01 120 chr2R:8670100-8670220 2.36e-01 120 chr2R:13935260-13935380 6.69e-01 120 chr2R:19127924-19128044 9.82e-01 120 chr3R:29651599-29651719 9.58e-01 120 chr3R:23969565-23969685 1.00e+00 120 chr2L:3323552-3323672 4.76e-01 120 chr3R:17526181-17526301 9.96e-03 [+4(6.49e-05)]_112 chr2R:24139164-24139284 8.40e-01 120 chr2R:13909059-13909179 1.14e-01 120 chr2L:2729999-2730119 4.16e-07 5_[+4(5.48e-07)]_6_[+1(1.51e-05)]_\ 59_[+4(6.49e-05)]_26 chr2L:13512201-13512321 1.12e-01 120 chr3L:13912916-13913036 5.83e-02 120 chr2L:892578-892698 5.34e-02 120 chr2R:23615206-23615326 7.28e-01 120 chrX:18494285-18494405 6.20e-01 120 chr3R:12451553-12451673 7.04e-01 120 chr3R:28118254-28118374 8.74e-01 120 chr2L:2348630-2348750 5.60e-01 120 chr2L:9493447-9493567 7.04e-01 120 chr2R:10122616-10122736 5.73e-01 120 chr2R:14247582-14247702 3.06e-01 120 chr2L:8982729-8982849 8.10e-01 120 chrX:5095725-5095845 9.78e-01 120 chrX:19453311-19453431 9.09e-01 120 chr2R:15480278-15480398 1.07e-04 96_[+4(5.48e-07)]_16 chr3R:26556078-26556198 5.43e-01 120 chr2R:17161018-17161138 2.85e-01 120 chrX:18004380-18004500 9.63e-01 120 chr2R:16849601-16849721 5.64e-02 8_[+5(2.88e-05)]_104 chr3L:4521918-4522038 6.67e-04 60_[+5(2.68e-06)]_52 chr2R:10854267-10854387 6.12e-01 120 chr2L:2872667-2872787 7.10e-01 120 chrX:11848696-11848816 7.60e-01 120 chr3R:19011076-19011196 9.99e-01 120 chr2L:19930207-19930327 8.51e-01 120 chr2L:16544642-16544762 9.58e-01 120 chr2L:22144279-22144399 7.02e-02 120 chrX:11081353-11081473 1.12e-01 120 chrX:18094855-18094975 6.61e-01 120 chr3R:26280520-26280640 9.89e-01 120 chr3L:2913430-2913550 9.99e-01 120 chrX:17696804-17696924 9.71e-01 120 chrX:11925335-11925455 8.34e-01 120 chr3R:23228796-23228916 4.39e-01 120 chrX:12937904-12938024 9.32e-01 120 chr3R:22447379-22447499 4.50e-02 120 chrX:4262826-4262946 5.90e-01 120 chr3R:23181162-23181282 9.40e-01 120 chr2R:6464938-6465058 1.29e-02 107_[+5(1.17e-05)]_5 chr2R:17085658-17085778 2.78e-02 120 chr2R:9546498-9546618 5.28e-03 120 chr2L:20807747-20807867 8.14e-01 120 chr2R:13482190-13482310 9.38e-01 120 chr3R:24571830-24571950 1.06e-01 120 chr3L:14190120-14190240 9.88e-01 120 chr3L:8445135-8445255 9.53e-01 120 chr3L:2845294-2845414 7.45e-01 120 chr2L:11199194-11199314 2.48e-02 12_[+3(7.27e-06)]_100 chr2R:12547618-12547738 3.07e-02 29_[+3(7.27e-06)]_83 chr2R:14161287-14161407 1.00e+00 120 chr3L:12271434-12271554 8.33e-01 120 chr3R:28677034-28677154 9.81e-01 120 chr2R:6157349-6157469 6.68e-03 5_[+3(7.27e-06)]_107 chr3R:8354529-8354649 7.26e-01 120 chr3R:27557132-27557252 3.45e-01 120 chr3L:630202-630322 3.34e-01 120 chrX:8542149-8542269 8.62e-01 120 chrX:14169204-14169324 5.32e-01 120 chr3R:14077154-14077274 1.87e-01 120 chr3L:8689850-8689970 1.47e-01 120 chr3L:797034-797154 8.52e-01 120 chr2L:7395905-7396025 1.00e+00 120 chr3R:31810295-31810415 1.47e-01 120 chr3L:15814173-15814293 6.33e-02 120 chr2R:11435175-11435295 8.95e-01 120 chrX:15120235-15120355 8.76e-01 120 chr3L:5554527-5554647 7.11e-01 120 chr2R:18171987-18172107 3.24e-01 120 chr2L:9564666-9564786 9.98e-01 120 chr2R:17469354-17469474 9.81e-01 120 chr3L:19071571-19071691 5.38e-01 120 chrX:10573643-10573763 9.14e-01 120 chrX:17125089-17125209 6.69e-01 120 chrX:16944098-16944218 6.54e-01 120 chr3L:9691284-9691404 8.21e-01 120 chr2L:4224263-4224383 8.16e-02 120 chr2R:24943230-24943350 5.82e-01 120 chrX:9120973-9121093 4.59e-01 120 chr3R:30325604-30325724 2.27e-01 120 chr2L:13882058-13882178 9.97e-02 120 chr2L:9943625-9943745 5.30e-01 120 chr3L:14335976-14336096 9.74e-01 120 chr2L:20715177-20715297 9.13e-01 120 chr3L:15549072-15549192 6.62e-01 120 chr3R:14095530-14095650 9.60e-01 120 chr2R:7077021-7077141 2.54e-01 120 chr2L:19059049-19059169 3.38e-02 120 chr2L:18150721-18150841 6.61e-06 19_[+1(2.45e-05)]_19_[+3(7.27e-06)]_\ 66 chr3R:25275479-25275599 4.26e-01 120 chr2L:18377278-18377398 9.34e-01 120 chr3R:29891320-29891440 3.75e-05 17_[+5(8.59e-05)]_8_[+1(9.85e-07)]_\ 79 chr2R:12727656-12727776 1.00e+00 120 chr3L:11580034-11580154 9.70e-01 120 chrX:10184818-10184938 7.90e-01 120 chr3R:9238007-9238127 8.72e-01 120 chr3R:17385446-17385566 6.72e-02 120 chr3R:26014401-26014521 9.99e-01 120 chr3L:9371051-9371171 9.60e-01 120 chrX:6657065-6657185 2.89e-01 120 chrX:1270771-1270891 8.88e-01 120 chrX:14679311-14679431 1.00e+00 120 chrX:9193722-9193842 9.27e-01 120 chr3R:10888614-10888734 9.05e-03 110_[+5(1.31e-05)]_2 chrX:9352859-9352979 9.04e-01 120 chrX:3381105-3381225 9.85e-01 120 chr3R:15250636-15250756 1.00e+00 120 chr2L:21037847-21037967 3.58e-04 29_[+1(4.59e-07)]_83 chr3R:26117781-26117901 8.05e-01 120 chr2R:7748179-7748299 4.63e-02 22_[+5(1.04e-05)]_90 chrX:3019740-3019860 8.44e-01 120 chr2R:18883655-18883775 8.10e-01 120 chr2R:21018393-21018513 9.81e-01 120 chr3R:29068950-29069070 8.22e-01 120 chr2L:16647885-16648005 9.25e-01 120 chr2R:18289094-18289214 5.65e-03 109_[+1(3.27e-05)]_3 chr2L:10428641-10428761 3.06e-01 120 chr3L:6189164-6189284 4.58e-01 120 chr2R:24657153-24657273 6.20e-01 120 chrX:12470659-12470779 2.42e-01 120 chr3L:22471744-22471864 6.65e-03 74_[+1(4.03e-06)]_38 chr2R:19389460-19389580 9.35e-04 98_[+2(2.28e-05)]_14 chr3L:511982-512102 6.38e-03 46_[+1(5.51e-06)]_66 chr3L:8951175-8951295 9.95e-01 120 chrX:10600656-10600776 2.26e-01 120 chr3L:8629068-8629188 9.98e-01 120 chr3R:16355516-16355636 6.08e-05 4_[+1(1.51e-05)]_108 chr3R:29859922-29860042 2.67e-02 49_[+3(7.27e-06)]_63 chr3R:14755254-14755374 7.86e-01 120 chr2R:8002273-8002393 9.99e-01 120 chr3R:26172167-26172287 1.63e-01 120 chr3R:11661865-11661985 5.23e-01 120 chr2R:17848915-17849035 9.00e-01 120 chr3R:14357527-14357647 8.16e-01 120 chr3R:11809771-11809891 7.97e-01 120 chr3L:15999806-15999926 9.89e-01 120 chr3R:19165053-19165173 2.02e-01 120 chr3L:16202668-16202788 9.66e-01 120 chr2R:21017474-21017594 8.15e-01 120 chr3R:9370539-9370659 9.47e-02 120 chrX:21322750-21322870 9.30e-01 120 chr2L:10468581-10468701 6.50e-01 120 chr3L:13923448-13923568 1.58e-01 120 chr3L:9847543-9847663 2.42e-01 120 chr3L:16571533-16571653 9.54e-01 120 chr2L:12369680-12369800 4.72e-04 37_[+5(1.32e-06)]_75 chr2L:20881469-20881589 3.03e-01 120 chr2L:10760722-10760842 9.99e-01 120 chr3L:10866768-10866888 4.00e-01 120 chr2R:14577750-14577870 8.13e-02 120 chr3L:15592692-15592812 9.99e-01 120 chr2R:18398323-18398443 7.91e-02 120 chr3L:12270006-12270126 5.46e-01 120 chr3R:24010964-24011084 9.97e-01 120 chr2R:15477979-15478099 1.91e-01 120 chr2R:21712046-21712166 3.70e-01 120 chr3L:15563072-15563192 3.24e-01 120 chr2R:12772767-12772887 2.41e-01 13_[+5(9.23e-05)]_99 chrX:17330435-17330555 3.16e-01 120 chr2L:1629714-1629834 1.12e-01 120 chr2L:10143434-10143554 4.11e-04 28_[+2(5.27e-07)]_84 chr2L:21371012-21371132 2.90e-02 120 chr3L:1578512-1578632 1.00e+00 120 chrX:5285946-5286066 3.37e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************