******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Fer2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:16153486-16153606 1.0000 120 chr2R:22205694-22205814 1.0000 120 chr2L:3323532-3323652 1.0000 120 chr2L:3938967-3939087 1.0000 120 chr3R:16151730-16151850 1.0000 120 chr3R:18508421-18508541 1.0000 120 chr2R:10079921-10080041 1.0000 120 chr3R:10498361-10498481 1.0000 120 chr2L:7778412-7778532 1.0000 120 chr3L:3096179-3096299 1.0000 120 chrX:13626045-13626165 1.0000 120 chr3L:20000320-20000440 1.0000 120 chr2L:19012936-19013056 1.0000 120 chr2R:15846374-15846494 1.0000 120 chr2L:22144321-22144441 1.0000 120 chr3R:25870564-25870684 1.0000 120 chr3R:8813260-8813380 1.0000 120 chr2R:17694760-17694880 1.0000 120 chr2R:12102736-12102856 1.0000 120 chrX:19306698-19306818 1.0000 120 chr2R:6464950-6465070 1.0000 120 chr2R:24282868-24282988 1.0000 120 chrX:6439628-6439748 1.0000 120 chr3R:23969598-23969718 1.0000 120 chr3L:17791664-17791784 1.0000 120 chr3L:960708-960828 1.0000 120 chr2R:10173239-10173359 1.0000 120 chr3R:17007475-17007595 1.0000 120 chr2L:936999-937119 1.0000 120 chr3R:12443331-12443451 1.0000 120 chr2R:18289121-18289241 1.0000 120 chr3R:27919619-27919739 1.0000 120 chr2R:9950308-9950428 1.0000 120 chr2L:85168-85288 1.0000 120 chrX:3399376-3399496 1.0000 120 chrX:7706406-7706526 1.0000 120 chr3L:7757025-7757145 1.0000 120 chr2L:4861626-4861746 1.0000 120 chr2L:482479-482599 1.0000 120 chr2L:8010946-8011066 1.0000 120 chr3R:22108494-22108614 1.0000 120 chr3R:16476617-16476737 1.0000 120 chr3R:6657478-6657598 1.0000 120 chr3R:12630406-12630526 1.0000 120 chr3R:21158830-21158950 1.0000 120 chr3L:6777641-6777761 1.0000 120 chr3L:16129156-16129276 1.0000 120 chr2R:14275511-14275631 1.0000 120 chr2R:17085649-17085769 1.0000 120 chr3R:8930285-8930405 1.0000 120 chr3L:3645742-3645862 1.0000 120 chr2R:18529110-18529230 1.0000 120 chr3R:10433946-10434066 1.0000 120 chrX:11885530-11885650 1.0000 120 chr3L:16146587-16146707 1.0000 120 chr2L:16819820-16819940 1.0000 120 chrX:7968434-7968554 1.0000 120 chr2R:22420640-22420760 1.0000 120 chrX:16585730-16585850 1.0000 120 chr2R:20252217-20252337 1.0000 120 chrX:11379321-11379441 1.0000 120 chr3R:24102574-24102694 1.0000 120 chr2L:3524905-3525025 1.0000 120 chr3R:22121364-22121484 1.0000 120 chr3R:24865047-24865167 1.0000 120 chr2L:12369722-12369842 1.0000 120 chr2R:17206049-17206169 1.0000 120 chrX:11848756-11848876 1.0000 120 chrX:22449395-22449515 1.0000 120 chr2R:18850637-18850757 1.0000 120 chr3R:5660185-5660305 1.0000 120 chr3R:14479722-14479842 1.0000 120 chr2L:18658267-18658387 1.0000 120 chr2R:8759632-8759752 1.0000 120 chr2R:19389404-19389524 1.0000 120 chr3R:10888653-10888773 1.0000 120 chr2R:14576011-14576131 1.0000 120 chr3R:19223566-19223686 1.0000 120 chr3R:19875691-19875811 1.0000 120 chr3R:5367618-5367738 1.0000 120 chr3R:19622105-19622225 1.0000 120 chrX:16930505-16930625 1.0000 120 chr2R:17400149-17400269 1.0000 120 chr2R:22062474-22062594 1.0000 120 chr3L:6752890-6753010 1.0000 120 chr3R:29089778-29089898 1.0000 120 chr2R:22390321-22390441 1.0000 120 chr3L:22276795-22276915 1.0000 120 chrX:17293531-17293651 1.0000 120 chr3R:26717528-26717648 1.0000 120 chr2R:8127404-8127524 1.0000 120 chr3L:3411838-3411958 1.0000 120 chr3R:13441904-13442024 1.0000 120 chr4:1218787-1218907 1.0000 120 chrX:9106878-9106998 1.0000 120 chr2R:12870129-12870249 1.0000 120 chrX:13109846-13109966 1.0000 120 chr3R:7591373-7591493 1.0000 120 chr3L:3382029-3382149 1.0000 120 chr3R:17526152-17526272 1.0000 120 chrX:8837307-8837427 1.0000 120 chr3R:12997656-12997776 1.0000 120 chrX:12889124-12889244 1.0000 120 chr3R:27289829-27289949 1.0000 120 chr3R:26105990-26106110 1.0000 120 chr3L:21205132-21205252 1.0000 120 chr2L:18150756-18150876 1.0000 120 chr3R:11809771-11809891 1.0000 120 chr2R:12218895-12219015 1.0000 120 chr2R:23977346-23977466 1.0000 120 chr2R:18994142-18994262 1.0000 120 chr2L:13289717-13289837 1.0000 120 chr2L:20464441-20464561 1.0000 120 chr3L:19813511-19813631 1.0000 120 chr2L:11736084-11736204 1.0000 120 chr3L:3143521-3143641 1.0000 120 chr3L:9695731-9695851 1.0000 120 chr3L:1940942-1941062 1.0000 120 chr2L:11809525-11809645 1.0000 120 chr3R:14918380-14918500 1.0000 120 chr3L:11785439-11785559 1.0000 120 chr2R:23385721-23385841 1.0000 120 chr3R:14351473-14351593 1.0000 120 chr3L:20784916-20785036 1.0000 120 chr2R:12035206-12035326 1.0000 120 chr2L:1043716-1043836 1.0000 120 chr2L:7940763-7940883 1.0000 120 chr2R:17533785-17533905 1.0000 120 chr3L:4025852-4025972 1.0000 120 chr2L:20807743-20807863 1.0000 120 chr3R:4775433-4775553 1.0000 120 chr3L:329246-329366 1.0000 120 chr2L:8894412-8894532 1.0000 120 chrX:14583451-14583571 1.0000 120 chr2L:3228814-3228934 1.0000 120 chr2R:6144933-6145053 1.0000 120 chr3R:26494313-26494433 1.0000 120 chr2R:18398329-18398449 1.0000 120 chr3R:5413081-5413201 1.0000 120 chr3R:30325598-30325718 1.0000 120 chr3R:28556491-28556611 1.0000 120 chr2L:5876608-5876728 1.0000 120 chr3R:16099046-16099166 1.0000 120 chr2L:294944-295064 1.0000 120 chr3L:3932845-3932965 1.0000 120 chr3L:9691340-9691460 1.0000 120 chr2R:9109766-9109886 1.0000 120 chr2L:3880244-3880364 1.0000 120 chr2L:9493438-9493558 1.0000 120 chr3R:14875685-14875805 1.0000 120 chr3L:6807563-6807683 1.0000 120 chr3R:30198951-30199071 1.0000 120 chr3L:14031246-14031366 1.0000 120 chrX:18004282-18004402 1.0000 120 chrX:21322672-21322792 1.0000 120 chr2R:13935309-13935429 1.0000 120 chr3L:15034408-15034528 1.0000 120 chrX:10587668-10587788 1.0000 120 chr3R:9932596-9932716 1.0000 120 chr3R:12720060-12720180 1.0000 120 chr2L:16727861-16727981 1.0000 120 chr2R:12468378-12468498 1.0000 120 chr3L:19834295-19834415 1.0000 120 chr2R:20994770-20994890 1.0000 120 chr3R:20555862-20555982 1.0000 120 chr2L:5196833-5196953 1.0000 120 chr2R:24657159-24657279 1.0000 120 chr3R:10411855-10411975 1.0000 120 chr4:179508-179628 1.0000 120 chrX:17125104-17125224 1.0000 120 chr3L:1139502-1139622 1.0000 120 chr2R:18451057-18451177 1.0000 120 chrX:15120186-15120306 1.0000 120 chr3R:18168423-18168543 1.0000 120 chr2L:10143443-10143563 1.0000 120 chr3L:19071570-19071690 1.0000 120 chrX:5286022-5286142 1.0000 120 chr3R:15351083-15351203 1.0000 120 chrX:8533741-8533861 1.0000 120 chr2R:21018354-21018474 1.0000 120 chr2L:12542125-12542245 1.0000 120 chr3L:797073-797193 1.0000 120 chr3R:30802905-30803025 1.0000 120 chr3L:9729906-9730026 1.0000 120 chr3L:4254610-4254730 1.0000 120 chr3L:12271424-12271544 1.0000 120 chr2R:9847805-9847925 1.0000 120 chr2R:6636360-6636480 1.0000 120 chr2L:6070719-6070839 1.0000 120 chrX:11451123-11451243 1.0000 120 chr2R:11197576-11197696 1.0000 120 chr2L:6082965-6083085 1.0000 120 chr3R:30802263-30802383 1.0000 120 chr3R:21373557-21373677 1.0000 120 chrX:3019738-3019858 1.0000 120 chr2R:21017543-21017663 1.0000 120 chr2L:20097281-20097401 1.0000 120 chrX:13756998-13757118 1.0000 120 chr3R:25123361-25123481 1.0000 120 chr2R:19292170-19292290 1.0000 120 chr3L:4521963-4522083 1.0000 120 chr3R:15837173-15837293 1.0000 120 chrX:5329421-5329541 1.0000 120 chr2R:16833065-16833185 1.0000 120 chrX:17696809-17696929 1.0000 120 chr2L:6283413-6283533 1.0000 120 chr3R:19924467-19924587 1.0000 120 chrX:17582795-17582915 1.0000 120 chr2L:14394312-14394432 1.0000 120 chr2L:9494910-9495030 1.0000 120 chrX:1270689-1270809 1.0000 120 chr3R:8033120-8033240 1.0000 120 chr3L:18997192-18997312 1.0000 120 chr2L:15629894-15630014 1.0000 120 chr2L:1207638-1207758 1.0000 120 chrX:16288644-16288764 1.0000 120 chr3R:6406043-6406163 1.0000 120 chr2R:9546550-9546670 1.0000 120 chr3L:8629089-8629209 1.0000 120 chr2L:20715166-20715286 1.0000 120 chr3R:14048938-14049058 1.0000 120 chr3L:5554558-5554678 1.0000 120 chr2R:14574242-14574362 1.0000 120 chr3L:14031907-14032027 1.0000 120 chr2L:7871950-7872070 1.0000 120 chr3R:18670595-18670715 1.0000 120 chr3L:16582870-16582990 1.0000 120 chrX:17330353-17330473 1.0000 120 chr3L:4170095-4170215 1.0000 120 chr2R:18609555-18609675 1.0000 120 chr2L:7412176-7412296 1.0000 120 chr2R:12337695-12337815 1.0000 120 chr3R:27273635-27273755 1.0000 120 chr2R:19146087-19146207 1.0000 120 chr2L:16547787-16547907 1.0000 120 chr3R:20588526-20588646 1.0000 120 chr2R:12772815-12772935 1.0000 120 chr2R:9309600-9309720 1.0000 120 chr3R:27937907-27938027 1.0000 120 chr3R:8673832-8673952 1.0000 120 chr3L:3437384-3437504 1.0000 120 chr3L:16779761-16779881 1.0000 120 chr3L:21821787-21821907 1.0000 120 chr3L:12270053-12270173 1.0000 120 chrX:12631467-12631587 1.0000 120 chr3R:10161287-10161407 1.0000 120 chr3L:11049522-11049642 1.0000 120 chr3L:15588642-15588762 1.0000 120 chr3L:15563082-15563202 1.0000 120 chr2L:4459710-4459830 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Fer2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Fer2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.338 C 0.165 G 0.163 T 0.334 Background letter frequencies (from file dataset with add-one prior applied): A 0.338 C 0.165 G 0.163 T 0.334 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GSCWGCVS MEME-1 width = 8 sites = 36 llr = 310 E-value = 2.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSCWGCVS MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::4::32 pos.-specific C 248::a45 probability G 8632a:43 matrix T :::4:::: bits 2.6 ** 2.4 ** 2.1 ** 1.8 * * ** Relative 1.6 *** ** Entropy 1.3 *** ** (12.4 bits) 1.0 *** ** * 0.8 *** **** 0.5 *** **** 0.3 ******** 0.0 -------- Multilevel GGCTGCCC consensus CGA GG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCWGCVS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:11049522-11049642 95 2.13e-06 CATCCGATAA GGCTGCCC CAATATCAAC chr2L:20097281-20097401 81 2.13e-06 ACTATCTAAA GGCTGCCC ATGCTAGAAA chr3R:27273635-27273755 59 6.45e-06 ACTAAACAAC GGCAGCGC CAGCAGCTAG chr2R:12337695-12337815 112 6.45e-06 CGAGCAGTCT GGCAGCCC A chr3R:21158830-21158950 18 9.67e-06 ATTTTGGTTC GCCAGCCC GAGTTGAACG chr2R:22390321-22390441 104 1.71e-05 TGACTTTATG GCCTGCGG TAATTTACC chr3R:19875691-19875811 76 1.71e-05 ACGCGATTGT GCCTGCCG TCATTGGTGA chr3L:22276795-22276915 93 1.81e-05 ATATTGTGCA GGCGGCGG ACGGAACTGC chrX:12889124-12889244 26 2.03e-05 ACAACTTGTT GCCAGCGG ACAAACAGCG chr3R:21373557-21373677 37 2.35e-05 GAAGCACCAG GGCTGCAC ATTCAATTAG chr3R:18168423-18168543 79 2.56e-05 AGTACTTGCT GGGTGCCC CAACAATACT chr3R:17526152-17526272 26 3.01e-05 GTTGAATCCA GCCTGCAC GGTGAAAGAA chr3R:6657478-6657598 2 3.01e-05 T GGCAGCAC TGTAGCGTAT chr3R:16153486-16153606 110 3.54e-05 GAATCTCTGT GGCGGCAC ACG chrX:22449395-22449515 52 3.87e-05 GCAGCATAGT GGGGGCGC TATGAAATAT chr2R:24282868-24282988 60 3.87e-05 TGGGTGAACT GGGGGCGC CTTCTGGCGA chr3L:21205132-21205252 74 4.62e-05 CATATAGACC GCGAGCCC CCTATAATAG chr3R:5367618-5367738 73 4.94e-05 TCCATACTCC GGGTGCCG TTATCGCAAC chr3R:10161287-10161407 44 6.25e-05 AAAATACCAG GGCTGCCA GCTACACAAG chr2R:18451057-18451177 1 6.25e-05 . GGCTGCCA GATCAAATGG chr3L:19834295-19834415 35 6.25e-05 AAGCAAAGTT GGCTGCGA TCCAGTGGGG chr3R:9932596-9932716 64 6.25e-05 CCCCTGCCCC CCCTGCCC TACCATCGAG chr2L:19012936-19013056 36 6.25e-05 GTTGCCGTCG GGCTGCCA CACCCACCCC chr3L:16582870-16582990 78 8.31e-05 AAATAATATT CCCAGCCC TGTGGTAACT chr2L:12369722-12369842 108 8.31e-05 AATAAGCGTC GCCAGCAG TTTGT chr3R:19223566-19223686 38 9.16e-05 TGCTGGCTGG GCGAGCGG GGAGGGCGAA chr3R:14351473-14351593 1 9.93e-05 . GCCAGCGA AGGGTGGCCC chr2R:9546550-9546670 7 1.06e-04 CCAACC GCCGGCGA CAAGCACAGG chr2R:6144933-6145053 45 1.06e-04 GCAGAAAGAA CGCAGCGG GGGAGGGGCG chr3L:3096179-3096299 83 1.14e-04 TATTTTTATG CCCAGCGG AGGGTTAAAT chr2R:11197576-11197696 75 1.25e-04 TTGTGATTTT GGGTGCAG TGTGCGAATT chr2L:6283413-6283533 38 1.48e-04 ACCATTCGGT CGCGGCAC CCGAAAATCA chr2L:5876608-5876728 31 1.48e-04 TCACAGGTTG CCGTGCGC AAACAAACAG chr2L:3524905-3525025 97 1.48e-04 CTCTCCAGTT GGGAGCAG AGGGTAGCAA chr3R:14479722-14479842 47 1.62e-04 TTATCAAGCA CCCAGCAC AAGTGTTTCG chr3R:10498361-10498481 74 1.62e-04 CGAGATGCGA GCCTGCAA TTGACGGACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCWGCVS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:11049522-11049642 2.1e-06 94_[+1]_18 chr2L:20097281-20097401 2.1e-06 80_[+1]_32 chr3R:27273635-27273755 6.4e-06 58_[+1]_54 chr2R:12337695-12337815 6.4e-06 111_[+1]_1 chr3R:21158830-21158950 9.7e-06 17_[+1]_95 chr2R:22390321-22390441 1.7e-05 103_[+1]_9 chr3R:19875691-19875811 1.7e-05 75_[+1]_37 chr3L:22276795-22276915 1.8e-05 92_[+1]_20 chrX:12889124-12889244 2e-05 25_[+1]_87 chr3R:21373557-21373677 2.4e-05 36_[+1]_76 chr3R:18168423-18168543 2.6e-05 78_[+1]_34 chr3R:17526152-17526272 3e-05 25_[+1]_87 chr3R:6657478-6657598 3e-05 1_[+1]_111 chr3R:16153486-16153606 3.5e-05 109_[+1]_3 chrX:22449395-22449515 3.9e-05 51_[+1]_61 chr2R:24282868-24282988 3.9e-05 59_[+1]_53 chr3L:21205132-21205252 4.6e-05 73_[+1]_39 chr3R:5367618-5367738 4.9e-05 72_[+1]_40 chr3R:10161287-10161407 6.2e-05 43_[+1]_69 chr2R:18451057-18451177 6.2e-05 [+1]_112 chr3L:19834295-19834415 6.2e-05 34_[+1]_78 chr3R:9932596-9932716 6.2e-05 63_[+1]_49 chr2L:19012936-19013056 6.2e-05 35_[+1]_77 chr3L:16582870-16582990 8.3e-05 77_[+1]_35 chr2L:12369722-12369842 8.3e-05 107_[+1]_5 chr3R:19223566-19223686 9.2e-05 37_[+1]_75 chr3R:14351473-14351593 9.9e-05 [+1]_112 chr2R:9546550-9546670 0.00011 6_[+1]_106 chr2R:6144933-6145053 0.00011 44_[+1]_68 chr3L:3096179-3096299 0.00011 82_[+1]_30 chr2R:11197576-11197696 0.00013 74_[+1]_38 chr2L:6283413-6283533 0.00015 37_[+1]_75 chr2L:5876608-5876728 0.00015 30_[+1]_82 chr2L:3524905-3525025 0.00015 96_[+1]_16 chr3R:14479722-14479842 0.00016 46_[+1]_66 chr3R:10498361-10498481 0.00016 73_[+1]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCWGCVS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSCWGCVS width=8 seqs=36 chr3L:11049522-11049642 ( 95) GGCTGCCC 1 chr2L:20097281-20097401 ( 81) GGCTGCCC 1 chr3R:27273635-27273755 ( 59) GGCAGCGC 1 chr2R:12337695-12337815 ( 112) GGCAGCCC 1 chr3R:21158830-21158950 ( 18) GCCAGCCC 1 chr2R:22390321-22390441 ( 104) GCCTGCGG 1 chr3R:19875691-19875811 ( 76) GCCTGCCG 1 chr3L:22276795-22276915 ( 93) GGCGGCGG 1 chrX:12889124-12889244 ( 26) GCCAGCGG 1 chr3R:21373557-21373677 ( 37) GGCTGCAC 1 chr3R:18168423-18168543 ( 79) GGGTGCCC 1 chr3R:17526152-17526272 ( 26) GCCTGCAC 1 chr3R:6657478-6657598 ( 2) GGCAGCAC 1 chr3R:16153486-16153606 ( 110) GGCGGCAC 1 chrX:22449395-22449515 ( 52) GGGGGCGC 1 chr2R:24282868-24282988 ( 60) GGGGGCGC 1 chr3L:21205132-21205252 ( 74) GCGAGCCC 1 chr3R:5367618-5367738 ( 73) GGGTGCCG 1 chr3R:10161287-10161407 ( 44) GGCTGCCA 1 chr2R:18451057-18451177 ( 1) GGCTGCCA 1 chr3L:19834295-19834415 ( 35) GGCTGCGA 1 chr3R:9932596-9932716 ( 64) CCCTGCCC 1 chr2L:19012936-19013056 ( 36) GGCTGCCA 1 chr3L:16582870-16582990 ( 78) CCCAGCCC 1 chr2L:12369722-12369842 ( 108) GCCAGCAG 1 chr3R:19223566-19223686 ( 38) GCGAGCGG 1 chr3R:14351473-14351593 ( 1) GCCAGCGA 1 chr2R:9546550-9546670 ( 7) GCCGGCGA 1 chr2R:6144933-6145053 ( 45) CGCAGCGG 1 chr3L:3096179-3096299 ( 83) CCCAGCGG 1 chr2R:11197576-11197696 ( 75) GGGTGCAG 1 chr2L:6283413-6283533 ( 38) CGCGGCAC 1 chr2L:5876608-5876728 ( 31) CCGTGCGC 1 chr2L:3524905-3525025 ( 97) GGGAGCAG 1 chr3R:14479722-14479842 ( 47) CCCAGCAC 1 chr3R:10498361-10498481 ( 74) GCCTGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCWGCVS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0197 E= 2.4e-001 -1181 23 230 -1181 -1181 143 176 -1181 -1181 218 61 -1181 20 -1181 3 41 -1181 -1181 261 -1181 -1181 260 -1181 -1181 -28 113 114 -1181 -80 160 90 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCWGCVS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 2.4e-001 0.000000 0.194444 0.805556 0.000000 0.000000 0.444444 0.555556 0.000000 0.000000 0.750000 0.250000 0.000000 0.388889 0.000000 0.166667 0.444444 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.277778 0.361111 0.361111 0.000000 0.194444 0.500000 0.305556 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCWGCVS MEME-1 regular expression -------------------------------------------------------------------------------- G[GC][CG][TA]GC[CGA][CG] -------------------------------------------------------------------------------- Time 9.27 secs. ******************************************************************************** ******************************************************************************** MOTIF GSGAGGGG MEME-2 width = 8 sites = 3 llr = 39 E-value = 2.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSGAGGGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C :3:::::: probability G a7a:aaaa matrix T :::::::: bits 2.6 * * **** 2.4 * * **** 2.1 * * **** 1.8 * * **** Relative 1.6 ******** Entropy 1.3 ******** (18.9 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGAGGGG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGAGGGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6144933-6145053 53 1.03e-06 AACGCAGCGG GGGAGGGG CGGTGTCAGG chr2L:936999-937119 51 1.03e-06 TGTTGGTTGG GGGAGGGG ACACCAGTTT chr2R:24282868-24282988 13 2.08e-06 GGACGATGGA GCGAGGGG GCATCGTGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGAGGGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6144933-6145053 1e-06 52_[+2]_60 chr2L:936999-937119 1e-06 50_[+2]_62 chr2R:24282868-24282988 2.1e-06 12_[+2]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGAGGGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSGAGGGG width=8 seqs=3 chr2R:6144933-6145053 ( 53) GGGAGGGG 1 chr2L:936999-937119 ( 51) GGGAGGGG 1 chr2R:24282868-24282988 ( 13) GCGAGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGAGGGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 2.7e+003 -823 -823 261 -823 -823 101 202 -823 -823 -823 261 -823 156 -823 -823 -823 -823 -823 261 -823 -823 -823 261 -823 -823 -823 261 -823 -823 -823 261 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGAGGGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.7e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGAGGGG MEME-2 regular expression -------------------------------------------------------------------------------- G[GC]GAGGGG -------------------------------------------------------------------------------- Time 15.49 secs. ******************************************************************************** ******************************************************************************** MOTIF STCGCCGG MEME-3 width = 8 sites = 5 llr = 63 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif STCGCCGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 4:a2aa:: probability G 6::8::aa matrix T :a:::::: bits 2.6 * **** 2.4 * **** 2.1 * **** 1.8 ****** Relative 1.6 ******** Entropy 1.3 ******** (18.1 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTCGCCGG consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCGCCGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:30802263-30802383 69 1.06e-06 ATGATAACAA GTCGCCGG AGCATATGGA chr3L:329246-329366 58 1.06e-06 AATCGTCCGA GTCGCCGG ATATCCATAT chr3R:30325598-30325718 104 2.13e-06 AAAGAAAACT CTCGCCGG GTTTTTTCA chr3R:10498361-10498481 17 2.13e-06 TTGGCACATC CTCGCCGG TTGCGGTGGA chr3R:4775433-4775553 109 3.20e-06 TTGCATTTGA GTCCCCGG AAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCGCCGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30802263-30802383 1.1e-06 68_[+3]_44 chr3L:329246-329366 1.1e-06 57_[+3]_55 chr3R:30325598-30325718 2.1e-06 103_[+3]_9 chr3R:10498361-10498481 2.1e-06 16_[+3]_96 chr3R:4775433-4775553 3.2e-06 108_[+3]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCGCCGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STCGCCGG width=8 seqs=5 chr3R:30802263-30802383 ( 69) GTCGCCGG 1 chr3L:329246-329366 ( 58) GTCGCCGG 1 chr3R:30325598-30325718 ( 104) CTCGCCGG 1 chr3R:10498361-10498481 ( 17) CTCGCCGG 1 chr3R:4775433-4775553 ( 109) GTCCCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCGCCGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 1.5e+003 -897 127 187 -897 -897 -897 -897 158 -897 259 -897 -897 -897 27 229 -897 -897 259 -897 -897 -897 259 -897 -897 -897 -897 261 -897 -897 -897 261 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCGCCGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.5e+003 0.000000 0.400000 0.600000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCGCCGG MEME-3 regular expression -------------------------------------------------------------------------------- [GC]TC[GC]CCGG -------------------------------------------------------------------------------- Time 21.70 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGGCTG MEME-4 width = 8 sites = 10 llr = 107 E-value = 6.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGGCTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1::3:2: pos.-specific C 39:1:a:: probability G 7:997::a matrix T ::1:::8: bits 2.6 * * 2.4 * * 2.1 *** * * 1.8 **** * * Relative 1.6 **** * * Entropy 1.3 ****** * (15.4 bits) 1.0 ****** * 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGGGCTG consensus C A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9729906-9730026 53 2.11e-06 TGTTGTAAAA CCGGGCTG ACAAGCGGTT chr2L:5196833-5196953 9 2.11e-06 TAACTTGG CCGGGCTG TGTTTGTGTC chrX:22449395-22449515 38 3.16e-06 TTCATTCAGA GCGGGCAG CATAGTGGGG chr3R:10161287-10161407 73 5.33e-06 AAACAGAGCT GCGGACTG TTCCATTGGT chr2L:16547787-16547907 78 5.33e-06 AGCTATTTTT GCGGACTG TTGATTTCCT chr3R:10498361-10498481 101 5.33e-06 GCATTGTGCG GCGGACTG TTTTAGGACT chr3R:12630406-12630526 4 6.39e-06 TTC GCGCGCTG CAAATCTAGA chr2L:10143443-10143563 40 7.46e-06 CAGGAAATAC CCGGGCAG ATATGTATAT chr3R:19223566-19223686 29 1.18e-05 CAAATTGATT GCTGGCTG GGCGAGCGGG chr2R:8127404-8127524 58 1.61e-05 GCCTAAAGCA GAGGGCTG TAATAATGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9729906-9730026 2.1e-06 52_[+4]_60 chr2L:5196833-5196953 2.1e-06 8_[+4]_104 chrX:22449395-22449515 3.2e-06 37_[+4]_75 chr3R:10161287-10161407 5.3e-06 72_[+4]_40 chr2L:16547787-16547907 5.3e-06 77_[+4]_35 chr3R:10498361-10498481 5.3e-06 100_[+4]_12 chr3R:12630406-12630526 6.4e-06 3_[+4]_109 chr2L:10143443-10143563 7.5e-06 39_[+4]_73 chr3R:19223566-19223686 1.2e-05 28_[+4]_84 chr2R:8127404-8127524 1.6e-05 57_[+4]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGGCTG width=8 seqs=10 chr3L:9729906-9730026 ( 53) CCGGGCTG 1 chr2L:5196833-5196953 ( 9) CCGGGCTG 1 chrX:22449395-22449515 ( 38) GCGGGCAG 1 chr3R:10161287-10161407 ( 73) GCGGACTG 1 chr2L:16547787-16547907 ( 78) GCGGACTG 1 chr3R:10498361-10498481 ( 101) GCGGACTG 1 chr3R:12630406-12630526 ( 4) GCGCGCTG 1 chr2L:10143443-10143563 ( 40) CCGGGCAG 1 chr3R:19223566-19223686 ( 29) GCTGGCTG 1 chr2R:8127404-8127524 ( 58) GAGGGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4072 E= 6.9e+002 -997 86 210 -997 -175 244 -997 -997 -997 -997 246 -173 -997 -72 246 -997 -17 -997 210 -997 -997 260 -997 -997 -75 -997 -997 126 -997 -997 261 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 6.9e+002 0.000000 0.300000 0.700000 0.000000 0.100000 0.900000 0.000000 0.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.100000 0.900000 0.000000 0.300000 0.000000 0.700000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.800000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCTG MEME-4 regular expression -------------------------------------------------------------------------------- [GC]CGG[GA]C[TA]G -------------------------------------------------------------------------------- Time 27.91 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGTGGYG MEME-5 width = 8 sites = 4 llr = 49 E-value = 7.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGTGGYG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::::53 probability G aaa:aa:8 matrix T :::a::5: bits 2.6 *** ** 2.4 *** ** 2.1 *** ** 1.8 *** ** * Relative 1.6 ****** * Entropy 1.3 ****** * (17.5 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGTGGCG consensus TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGYG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:18529110-18529230 41 1.03e-06 TGTTTTGATG GGGTGGCG TGTTTTTGTA chr2R:6144933-6145053 75 3.13e-06 GTCAGGTGGT GGGTGGTG GGTAGAATTC chrX:13626045-13626165 11 3.13e-06 TGCAAAAAAT GGGTGGTG GTGAACCTTT chr3R:14351473-14351593 10 4.17e-06 GCCAGCGAA GGGTGGCC CAAATGCCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGYG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18529110-18529230 1e-06 40_[+5]_72 chr2R:6144933-6145053 3.1e-06 74_[+5]_38 chrX:13626045-13626165 3.1e-06 10_[+5]_102 chr3R:14351473-14351593 4.2e-06 9_[+5]_103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGYG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGTGGYG width=8 seqs=4 chr2R:18529110-18529230 ( 41) GGGTGGCG 1 chr2R:6144933-6145053 ( 75) GGGTGGTG 1 chrX:13626045-13626165 ( 11) GGGTGGTG 1 chr3R:14351473-14351593 ( 10) GGGTGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGYG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 7.9e+003 -865 -865 261 -865 -865 -865 261 -865 -865 -865 261 -865 -865 -865 -865 158 -865 -865 261 -865 -865 -865 261 -865 -865 159 -865 58 -865 60 219 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGYG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 7.9e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.250000 0.750000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGYG MEME-5 regular expression -------------------------------------------------------------------------------- GGGTGG[CT][GC] -------------------------------------------------------------------------------- Time 34.10 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16153486-16153606 7.34e-04 22_[+4(7.24e-05)]_79_[+1(3.54e-05)]_\ 3 chr2R:22205694-22205814 9.40e-01 120 chr2L:3323532-3323652 6.63e-01 120 chr2L:3938967-3939087 9.20e-01 120 chr3R:16151730-16151850 1.85e-01 120 chr3R:18508421-18508541 1.00e+00 120 chr2R:10079921-10080041 9.89e-01 120 chr3R:10498361-10498481 2.94e-07 16_[+3(2.13e-06)]_76_[+4(5.33e-06)]_\ 12 chr2L:7778412-7778532 7.34e-01 120 chr3L:3096179-3096299 3.67e-02 120 chrX:13626045-13626165 3.61e-03 10_[+5(3.13e-06)]_102 chr3L:20000320-20000440 9.19e-01 120 chr2L:19012936-19013056 3.05e-04 35_[+1(6.25e-05)]_51_[+4(5.23e-05)]_\ 18 chr2R:15846374-15846494 7.02e-01 120 chr2L:22144321-22144441 3.59e-01 120 chr3R:25870564-25870684 1.90e-01 120 chr3R:8813260-8813380 8.45e-01 120 chr2R:17694760-17694880 8.74e-01 120 chr2R:12102736-12102856 9.11e-01 120 chrX:19306698-19306818 6.90e-02 47_[+2(7.45e-05)]_65 chr2R:6464950-6465070 1.29e-02 120 chr2R:24282868-24282988 1.01e-05 12_[+2(2.08e-06)]_39_[+1(3.87e-05)]_\ 53 chrX:6439628-6439748 8.01e-02 120 chr3R:23969598-23969718 1.00e+00 120 chr3L:17791664-17791784 7.70e-01 120 chr3L:960708-960828 1.30e-01 120 chr2R:10173239-10173359 8.63e-02 108_[+4(4.36e-05)]_4 chr3R:17007475-17007595 9.21e-01 120 chr2L:936999-937119 2.34e-05 50_[+2(1.03e-06)]_62 chr3R:12443331-12443451 9.87e-01 120 chr2R:18289121-18289241 2.04e-01 120 chr3R:27919619-27919739 7.70e-01 120 chr2R:9950308-9950428 3.40e-01 120 chr2L:85168-85288 6.88e-01 120 chrX:3399376-3399496 9.81e-01 120 chrX:7706406-7706526 9.39e-01 120 chr3L:7757025-7757145 5.87e-01 120 chr2L:4861626-4861746 5.95e-01 120 chr2L:482479-482599 7.98e-02 120 chr2L:8010946-8011066 9.82e-01 120 chr3R:22108494-22108614 2.97e-01 120 chr3R:16476617-16476737 1.00e+00 120 chr3R:6657478-6657598 1.49e-02 1_[+1(3.01e-05)]_111 chr3R:12630406-12630526 3.61e-03 3_[+4(6.39e-06)]_109 chr3R:21158830-21158950 4.12e-03 17_[+1(9.67e-06)]_95 chr3L:6777641-6777761 1.75e-01 120 chr3L:16129156-16129276 1.00e+00 120 chr2R:14275511-14275631 3.92e-01 120 chr2R:17085649-17085769 8.20e-01 120 chr3R:8930285-8930405 8.77e-01 120 chr3L:3645742-3645862 5.19e-01 120 chr2R:18529110-18529230 1.21e-04 40_[+5(1.03e-06)]_72 chr3R:10433946-10434066 6.99e-02 120 chrX:11885530-11885650 5.35e-01 120 chr3L:16146587-16146707 9.91e-01 120 chr2L:16819820-16819940 1.00e+00 120 chrX:7968434-7968554 5.60e-01 120 chr2R:22420640-22420760 9.81e-01 120 chrX:16585730-16585850 1.00e+00 120 chr2R:20252217-20252337 5.36e-01 120 chrX:11379321-11379441 5.33e-01 120 chr3R:24102574-24102694 9.35e-01 120 chr2L:3524905-3525025 1.79e-03 120 chr3R:22121364-22121484 1.00e+00 120 chr3R:24865047-24865167 9.99e-01 120 chr2L:12369722-12369842 4.75e-03 104_[+3(4.42e-05)]_8 chr2R:17206049-17206169 6.78e-01 120 chrX:11848756-11848876 7.51e-01 120 chrX:22449395-22449515 8.45e-06 37_[+4(3.16e-06)]_6_[+1(3.87e-05)]_\ 61 chr2R:18850637-18850757 9.76e-01 120 chr3R:5660185-5660305 3.88e-01 120 chr3R:14479722-14479842 1.78e-01 120 chr2L:18658267-18658387 1.00e+00 120 chr2R:8759632-8759752 8.78e-01 120 chr2R:19389404-19389524 5.08e-02 28_[+5(6.03e-05)]_84 chr3R:10888653-10888773 1.68e-01 120 chr2R:14576011-14576131 9.86e-01 120 chr3R:19223566-19223686 1.46e-06 28_[+4(1.18e-05)]_8_[+2(4.22e-05)]_\ 68 chr3R:19875691-19875811 2.43e-03 75_[+1(1.71e-05)]_37 chr3R:5367618-5367738 5.61e-08 15_[+2(1.03e-06)]_[+2(4.10e-06)]_2_\ [+5(3.13e-06)]_31_[+5(4.65e-05)]_40 chr3R:19622105-19622225 2.49e-01 120 chrX:16930505-16930625 9.93e-01 120 chr2R:17400149-17400269 3.89e-01 120 chr2R:22062474-22062594 7.15e-01 120 chr3L:6752890-6753010 9.96e-01 120 chr3R:29089778-29089898 1.08e-01 120 chr2R:22390321-22390441 2.15e-04 103_[+1(1.71e-05)]_9 chr3L:22276795-22276915 3.03e-05 92_[+1(1.81e-05)]_20 chrX:17293531-17293651 9.95e-01 120 chr3R:26717528-26717648 7.58e-01 120 chr2R:8127404-8127524 3.45e-02 57_[+4(1.61e-05)]_55 chr3L:3411838-3411958 9.94e-01 120 chr3R:13441904-13442024 3.29e-03 61_[+5(1.58e-05)]_51 chr4:1218787-1218907 1.00e+00 120 chrX:9106878-9106998 6.69e-01 120 chr2R:12870129-12870249 1.66e-01 120 chrX:13109846-13109966 1.00e+00 120 chr3R:7591373-7591493 4.45e-01 120 chr3L:3382029-3382149 9.88e-01 120 chr3R:17526152-17526272 2.76e-02 25_[+1(3.01e-05)]_12_[+1(8.31e-05)]_\ 67 chrX:8837307-8837427 6.97e-01 120 chr3R:12997656-12997776 1.00e+00 120 chrX:12889124-12889244 2.67e-03 25_[+1(2.03e-05)]_87 chr3R:27289829-27289949 9.41e-02 120 chr3R:26105990-26106110 9.33e-01 120 chr3L:21205132-21205252 1.18e-01 73_[+1(4.62e-05)]_39 chr2L:18150756-18150876 3.79e-01 120 chr3R:11809771-11809891 5.81e-01 120 chr2R:12218895-12219015 7.17e-01 120 chr2R:23977346-23977466 9.58e-01 120 chr2R:18994142-18994262 8.26e-01 120 chr2L:13289717-13289837 8.52e-01 120 chr2L:20464441-20464561 3.04e-01 120 chr3L:19813511-19813631 3.74e-01 120 chr2L:11736084-11736204 5.22e-01 120 chr3L:3143521-3143641 1.00e+00 120 chr3L:9695731-9695851 9.94e-01 120 chr3L:1940942-1941062 2.80e-01 120 chr2L:11809525-11809645 1.08e-01 120 chr3R:14918380-14918500 9.98e-01 120 chr3L:11785439-11785559 9.98e-01 120 chr2R:23385721-23385841 1.24e-01 120 chr3R:14351473-14351593 3.58e-05 9_[+5(4.17e-06)]_103 chr3L:20784916-20785036 7.28e-01 120 chr2R:12035206-12035326 4.01e-01 120 chr2L:1043716-1043836 8.60e-02 120 chr2L:7940763-7940883 2.45e-02 120 chr2R:17533785-17533905 5.24e-01 120 chr3L:4025852-4025972 4.61e-01 120 chr2L:20807743-20807863 1.80e-01 120 chr3R:4775433-4775553 1.51e-02 108_[+3(3.20e-06)]_4 chr3L:329246-329366 6.56e-04 57_[+3(1.06e-06)]_55 chr2L:8894412-8894532 4.12e-01 120 chrX:14583451-14583571 7.96e-01 120 chr2L:3228814-3228934 2.06e-01 120 chr2R:6144933-6145053 5.78e-07 52_[+2(1.03e-06)]_14_[+5(3.13e-06)]_\ 38 chr3R:26494313-26494433 9.97e-01 120 chr2R:18398329-18398449 5.99e-01 120 chr3R:5413081-5413201 5.17e-01 120 chr3R:30325598-30325718 2.76e-02 103_[+3(2.13e-06)]_9 chr3R:28556491-28556611 7.45e-02 120 chr2L:5876608-5876728 2.09e-02 120 chr3R:16099046-16099166 1.70e-01 120 chr2L:294944-295064 2.26e-01 120 chr3L:3932845-3932965 4.28e-02 120 chr3L:9691340-9691460 1.00e+00 120 chr2R:9109766-9109886 2.28e-01 43_[+4(5.45e-05)]_69 chr2L:3880244-3880364 9.94e-01 120 chr2L:9493438-9493558 1.00e+00 120 chr3R:14875685-14875805 8.78e-02 120 chr3L:6807563-6807683 4.69e-01 120 chr3R:30198951-30199071 8.17e-01 120 chr3L:14031246-14031366 1.69e-01 120 chrX:18004282-18004402 3.24e-01 120 chrX:21322672-21322792 9.97e-01 120 chr2R:13935309-13935429 5.33e-01 120 chr3L:15034408-15034528 1.00e+00 120 chrX:10587668-10587788 4.72e-01 120 chr3R:9932596-9932716 2.17e-03 40_[+3(7.81e-05)]_6_[+1(6.25e-05)]_\ 1_[+1(6.25e-05)]_49 chr3R:12720060-12720180 2.43e-01 120 chr2L:16727861-16727981 4.48e-01 120 chr2R:12468378-12468498 1.28e-01 120 chr3L:19834295-19834415 1.07e-03 34_[+1(6.25e-05)]_54_[+4(8.58e-05)]_\ 16 chr2R:20994770-20994890 1.74e-01 120 chr3R:20555862-20555982 2.54e-01 120 chr2L:5196833-5196953 2.48e-04 8_[+4(2.11e-06)]_104 chr2R:24657159-24657279 5.48e-01 120 chr3R:10411855-10411975 1.11e-01 120 chr4:179508-179628 5.67e-01 120 chrX:17125104-17125224 9.95e-01 120 chr3L:1139502-1139622 4.02e-01 120 chr2R:18451057-18451177 5.29e-02 [+1(6.25e-05)]_112 chrX:15120186-15120306 2.53e-01 120 chr3R:18168423-18168543 3.66e-04 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-------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************