******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Fer1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:7139336-7139456 1.0000 120 chrX:1476723-1476843 1.0000 120 chr3R:24474920-24475040 1.0000 120 chr2L:4936473-4936593 1.0000 120 chr3R:10352347-10352467 1.0000 120 chr3R:7139535-7139655 1.0000 120 chr2L:4928528-4928648 1.0000 120 chrX:6439642-6439762 1.0000 120 chr2R:21417181-21417301 1.0000 120 chr2L:3755292-3755412 1.0000 120 chr3R:5696501-5696621 1.0000 120 chr2R:17918892-17919012 1.0000 120 chr3L:2913439-2913559 1.0000 120 chr3R:12543080-12543200 1.0000 120 chr2R:22787610-22787730 1.0000 120 chr3L:17310634-17310754 1.0000 120 chr3R:28118241-28118361 1.0000 120 chr3L:17539066-17539186 1.0000 120 chrX:12073787-12073907 1.0000 120 chr3R:25152490-25152610 1.0000 120 chr3R:29651612-29651732 1.0000 120 chr2R:15515770-15515890 1.0000 120 chr2L:15179148-15179268 1.0000 120 chr3R:13600700-13600820 1.0000 120 chr3R:25855775-25855895 1.0000 120 chr2L:1230836-1230956 1.0000 120 chr2R:23154712-23154832 1.0000 120 chr2L:14141394-14141514 1.0000 120 chr3R:17526186-17526306 1.0000 120 chr3R:11243216-11243336 1.0000 120 chr3L:10827497-10827617 1.0000 120 chr3R:12591835-12591955 1.0000 120 chr2L:20840598-20840718 1.0000 120 chr3R:9581181-9581301 1.0000 120 chr3L:17113342-17113462 1.0000 120 chrX:3273692-3273812 1.0000 120 chrX:9520337-9520457 1.0000 120 chr3R:25854933-25855053 1.0000 120 chr2L:13049263-13049383 1.0000 120 chrX:7995283-7995403 1.0000 120 chr2L:3939019-3939139 1.0000 120 chr3R:29978754-29978874 1.0000 120 chr3L:5297346-5297466 1.0000 120 chr3R:25968641-25968761 1.0000 120 chrX:12870077-12870197 1.0000 120 chr2R:24281801-24281921 1.0000 120 chr3R:28959212-28959332 1.0000 120 chr2L:2501997-2502117 1.0000 120 chr3R:30325606-30325726 1.0000 120 chr3R:26333405-26333525 1.0000 120 chr3L:13903374-13903494 1.0000 120 chr2L:20808317-20808437 1.0000 120 chr2R:13723352-13723472 1.0000 120 chr2R:12739843-12739963 1.0000 120 chrX:10184816-10184936 1.0000 120 chr2R:9060127-9060247 1.0000 120 chr3L:5182358-5182478 1.0000 120 chr3R:24467388-24467508 1.0000 120 chr2L:9509752-9509872 1.0000 120 chr3R:9857963-9858083 1.0000 120 chrX:5664314-5664434 1.0000 120 chr3R:26671811-26671931 1.0000 120 chr3R:26280506-26280626 1.0000 120 chr2R:22616871-22616991 1.0000 120 chr3L:16146684-16146804 1.0000 120 chr2L:19930218-19930338 1.0000 120 chrX:3594420-3594540 1.0000 120 chr3R:16476588-16476708 1.0000 120 chrX:23004941-23005061 1.0000 120 chr2R:7749753-7749873 1.0000 120 chr2L:85212-85332 1.0000 120 chr3L:14804770-14804890 1.0000 120 chr2R:18539957-18540077 1.0000 120 chr3L:15923481-15923601 1.0000 120 chr3R:27813366-27813486 1.0000 120 chr3L:21321933-21322053 1.0000 120 chr2R:24275496-24275616 1.0000 120 chr2R:22789410-22789530 1.0000 120 chr3L:11863706-11863826 1.0000 120 chr2R:22508146-22508266 1.0000 120 chr3L:11528500-11528620 1.0000 120 chr3R:9083555-9083675 1.0000 120 chr2L:18267962-18268082 1.0000 120 chr2L:12549127-12549247 1.0000 120 chrX:18468030-18468150 1.0000 120 chr2L:3228872-3228992 1.0000 120 chr3R:7821739-7821859 1.0000 120 chr2L:9864410-9864530 1.0000 120 chr2R:22390370-22390490 1.0000 120 chr2R:16916223-16916343 1.0000 120 chr2R:12218902-12219022 1.0000 120 chr3L:3801444-3801564 1.0000 120 chr2L:14011783-14011903 1.0000 120 chr3R:28020676-28020796 1.0000 120 chr2R:21895088-21895208 1.0000 120 chr2R:17604641-17604761 1.0000 120 chr3R:5746781-5746901 1.0000 120 chr3L:917375-917495 1.0000 120 chr2L:20341761-20341881 1.0000 120 chr3R:17966154-17966274 1.0000 120 chr3R:29626044-29626164 1.0000 120 chr3L:2647809-2647929 1.0000 120 chr3R:17955856-17955976 1.0000 120 chr3L:17843412-17843532 1.0000 120 chr3R:15117867-15117987 1.0000 120 chr3L:18020981-18021101 1.0000 120 chr2R:11144970-11145090 1.0000 120 chr3L:2845322-2845442 1.0000 120 chr3R:25275486-25275606 1.0000 120 chr2R:23656736-23656856 1.0000 120 chr2L:20951426-20951546 1.0000 120 chr2L:4861655-4861775 1.0000 120 chr2L:13156441-13156561 1.0000 120 chr3L:16543410-16543530 1.0000 120 chr3L:11049536-11049656 1.0000 120 chr3L:1139542-1139662 1.0000 120 chr3R:23284399-23284519 1.0000 120 chr2L:5096978-5097098 1.0000 120 chrX:966957-967077 1.0000 120 chr3L:3078940-3079060 1.0000 120 chr2R:12547750-12547870 1.0000 120 chrX:16573810-16573930 1.0000 120 chr3R:31777808-31777928 1.0000 120 chr3R:7129516-7129636 1.0000 120 chr3R:31636670-31636790 1.0000 120 chrX:19453272-19453392 1.0000 120 chr3L:19216525-19216645 1.0000 120 chrX:18004357-18004477 1.0000 120 chrX:14727656-14727776 1.0000 120 chr3R:26494413-26494533 1.0000 120 chr3L:19845646-19845766 1.0000 120 chr3R:7130982-7131102 1.0000 120 chr2R:19971454-19971574 1.0000 120 chr3L:13912864-13912984 1.0000 120 chrX:17465675-17465795 1.0000 120 chr3L:2410976-2411096 1.0000 120 chr2L:4829152-4829272 1.0000 120 chr3R:14290162-14290282 1.0000 120 chr3L:19132764-19132884 1.0000 120 chr2L:4133216-4133336 1.0000 120 chr3L:19071535-19071655 1.0000 120 chr2R:14487718-14487838 1.0000 120 chr3R:26105959-26106079 1.0000 120 chr2R:21659985-21660105 1.0000 120 chr3R:24051772-24051892 1.0000 120 chr2R:21549102-21549222 1.0000 120 chr3R:29089793-29089913 1.0000 120 chrX:5095697-5095817 1.0000 120 chr3L:3411858-3411978 1.0000 120 chr3L:20406418-20406538 1.0000 120 chr2R:24028437-24028557 1.0000 120 chrX:8112887-8113007 1.0000 120 chr3R:26859442-26859562 1.0000 120 chr2L:7940789-7940909 1.0000 120 chr2L:19285617-19285737 1.0000 120 chr2R:17085647-17085767 1.0000 120 chr3L:1737998-1738118 1.0000 120 chr3R:26555954-26556074 1.0000 120 chr3R:24651233-24651353 1.0000 120 chrX:20503286-20503406 1.0000 120 chr3R:17605179-17605299 1.0000 120 chr2R:8002303-8002423 1.0000 120 chr3R:15366928-15367048 1.0000 120 chr2R:8150842-8150962 1.0000 120 chr2L:12063156-12063276 1.0000 120 chr2R:24139216-24139336 1.0000 120 chrX:13676676-13676796 1.0000 120 chr3L:11450648-11450768 1.0000 120 chr2R:10122602-10122722 1.0000 120 chr2R:10194994-10195114 1.0000 120 chr3L:18994617-18994737 1.0000 120 chr2L:12003081-12003201 1.0000 120 chr3R:4360810-4360930 1.0000 120 chrX:17149115-17149235 1.0000 120 chr2R:14031569-14031689 1.0000 120 chr2R:16848445-16848565 1.0000 120 chr3R:5300778-5300898 1.0000 120 chr2L:22144289-22144409 1.0000 120 chr3L:12269979-12270099 1.0000 120 chr2R:22387346-22387466 1.0000 120 chr3L:15034390-15034510 1.0000 120 chr3L:15814145-15814265 1.0000 120 chr3L:18833383-18833503 1.0000 120 chrX:11379261-11379381 1.0000 120 chr2R:7070928-7071048 1.0000 120 chr3L:8683944-8684064 1.0000 120 chr3L:3932866-3932986 1.0000 120 chr2L:937049-937169 1.0000 120 chr3R:9938624-9938744 1.0000 120 chr2L:11203747-11203867 1.0000 120 chr3L:10679816-10679936 1.0000 120 chr2L:9493411-9493531 1.0000 120 chr2R:18172005-18172125 1.0000 120 chr3R:13644805-13644925 1.0000 120 chrX:9156498-9156618 1.0000 120 chrX:12937956-12938076 1.0000 120 chr2L:13461045-13461165 1.0000 120 chr3L:6609292-6609412 1.0000 120 chrX:3019751-3019871 1.0000 120 chr2R:15155052-15155172 1.0000 120 chr2R:14574205-14574325 1.0000 120 chr2R:7879039-7879159 1.0000 120 chr2L:117887-118007 1.0000 120 chr3L:5807511-5807631 1.0000 120 chr3R:14657167-14657287 1.0000 120 chr2L:13203941-13204061 1.0000 120 chrX:13626023-13626143 1.0000 120 chrX:10573703-10573823 1.0000 120 chr3R:5413123-5413243 1.0000 120 chr3R:9430501-9430621 1.0000 120 chr2L:20715118-20715238 1.0000 120 chr3L:16202597-16202717 1.0000 120 chr2L:10760753-10760873 1.0000 120 chrX:6375798-6375918 1.0000 120 chrX:8542134-8542254 1.0000 120 chr2R:24629552-24629672 1.0000 120 chr2R:10023836-10023956 1.0000 120 chr2L:18966974-18967094 1.0000 120 chr2L:16647892-16648012 1.0000 120 chr2R:7984185-7984305 1.0000 120 chr2R:13430043-13430163 1.0000 120 chr3L:19847095-19847215 1.0000 120 chrX:19353141-19353261 1.0000 120 chr2L:552623-552743 1.0000 120 chrX:19268829-19268949 1.0000 120 chr3L:8689844-8689964 1.0000 120 chr3L:11580082-11580202 1.0000 120 chr3R:31134185-31134305 1.0000 120 chr2R:22661342-22661462 1.0000 120 chr2L:10143474-10143594 1.0000 120 chr2L:6465631-6465751 1.0000 120 chr3R:31810307-31810427 1.0000 120 chr3R:9019840-9019960 1.0000 120 chr3R:14875605-14875725 1.0000 120 chr3R:23963003-23963123 1.0000 120 chr2L:12463181-12463301 1.0000 120 chr2R:24657148-24657268 1.0000 120 chr3R:14479750-14479870 1.0000 120 chr2L:10565829-10565949 1.0000 120 chrX:16580052-16580172 1.0000 120 chr2R:15134175-15134295 1.0000 120 chr2L:16544664-16544784 1.0000 120 chr3L:16969858-16969978 1.0000 120 chr3L:15977664-15977784 1.0000 120 chr2L:19490239-19490359 1.0000 120 chr3R:24010902-24011022 1.0000 120 chrX:6800958-6801078 1.0000 120 chrX:9135193-9135313 1.0000 120 chrX:6657078-6657198 1.0000 120 chr2R:17533787-17533907 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Fer1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Fer1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.324 C 0.179 G 0.175 T 0.322 Background letter frequencies (from file dataset with add-one prior applied): A 0.324 C 0.179 G 0.175 T 0.322 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CMGCBGCC MEME-1 width = 8 sites = 35 llr = 300 E-value = 6.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CMGCBGCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :5:::::: pos.-specific C 9328529a probability G 1:71381: matrix T :1:13::: bits 2.5 * 2.3 * * 2.0 * ** 1.8 * *** Relative 1.5 * * *** Entropy 1.3 * ** *** (12.4 bits) 1.0 * ** *** 0.8 * ****** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGCCGCC consensus CC TC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGCBGCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16573810-16573930 69 2.83e-06 AACATTCGAA CCGCCGCC AACAACAATT chr2R:18539957-18540077 28 2.83e-06 GCTCGAGCAG CCGCCGCC GCAGCTTCGA chr3R:5696501-5696621 91 2.83e-06 GGAAATGGAG CAGCCGCC ATGTTGGCAG chr2L:4936473-4936593 54 2.83e-06 GGTTTCCATT CAGCCGCC GGCGCTGCTT chrX:9156498-9156618 8 5.60e-06 ACATATT CAGCGGCC ACAAGCACGT chrX:5664314-5664434 26 5.60e-06 GCACTGAGAG CAGCGGCC TGGAGCAAAA chr2R:14031569-14031689 27 1.07e-05 gctgctgctg ccgctgcC Agcgtcgctc chr3L:18020981-18021101 37 1.07e-05 GCCCGCTCTT CCGCTGCC ATTTCCGTTC chr2L:20341761-20341881 75 1.07e-05 CTCGAGTTGA CAGCTGCC ACATTTCTCA chrX:17149115-17149235 49 1.36e-05 TTCAGCCAGT CCCCCGCC CTCCACTCGT chr3L:19132764-19132884 102 1.65e-05 CGCCATTTCC CCGCCCCC TCTCCATGTC chr3R:31134185-31134305 2 2.11e-05 C CAGGCGCC ATCTATTGGC chr2R:10023836-10023956 1 3.92e-05 . CACCTGCC CAAGCAGGCG chr3L:5807511-5807631 62 3.92e-05 AGGCGGCGGC CAGGGGCC GAGTGACAGC chrX:5095697-5095817 3 4.71e-05 TT CCGCGGGC ATAGCGCATT chrX:6800958-6801078 44 5.33e-05 CCCGCCCCAC CTGCTGCC TTTGTGAACT chr3L:10679816-10679936 99 5.33e-05 AGCTGTTAAA CACCCCCC ACAAAAGTTT chr3L:3801444-3801564 13 5.33e-05 TCCATCTGAG CACCCCCC ACATGAAAGT chr3L:14804770-14804890 63 5.33e-05 GCAAACCCCC CACCCCCC CTGGCGACCA chr3R:10352347-10352467 52 5.33e-05 GCATTTCGCT CTGCTGCC GAATATGAGC chr3L:8683944-8684064 98 6.48e-05 AATCGTCGAC CAGGTGCC AGTCGCGGTC chr2L:4928528-4928648 63 6.48e-05 CGCATTGAAA GCGCCGCC GAGAATTGAA chr2L:4829152-4829272 34 7.26e-05 CGACTGGCCT CAGCTGGC GCAGACACTG chr3R:7139535-7139655 83 7.26e-05 GGATTTTCGC CACGCGCC TGGCATATGT chr3R:24010902-24011022 8 7.82e-05 CGGCAAT CAGGCCCC ACACCCAACC chr3R:26859442-26859562 96 9.62e-05 CTGGCACGTC CTGCGCCC CACTTTCGCG chrX:19353141-19353261 14 9.89e-05 gatgcggctc gAGCGGCC TGCTCTCGAA chr2L:10143474-10143594 102 1.23e-04 TAAAGCGATG CTCCTGCC AGGCTGACAA chr2R:14487718-14487838 48 1.23e-04 CAGCTGCTTG CAGCGCGC GTGTCGGTTA chrX:1476723-1476843 8 1.23e-04 AGCGCTT CCGCGCGC GACAGGTGCG chr2R:7070928-7071048 80 1.33e-04 TTTGTGGCGT CTGCGGGC AAACGGAAAA chr3R:7130982-7131102 30 1.50e-04 CATTACACCA CCGACGCC ATGCGAAGCT chr3L:11049536-11049656 95 1.50e-04 GCCCCAATAT CAACCGCC TTGTTTACAC chr3R:17966154-17966274 20 2.04e-04 CTTCGTGCTC CCGTTGCC TCTCATGTAA chr3R:9581181-9581301 100 2.13e-04 GAGCTTTGCT CACTCGCC AAACGGGGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGCBGCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16573810-16573930 2.8e-06 68_[+1]_44 chr2R:18539957-18540077 2.8e-06 27_[+1]_85 chr3R:5696501-5696621 2.8e-06 90_[+1]_22 chr2L:4936473-4936593 2.8e-06 53_[+1]_59 chrX:9156498-9156618 5.6e-06 7_[+1]_105 chrX:5664314-5664434 5.6e-06 25_[+1]_87 chr2R:14031569-14031689 1.1e-05 26_[+1]_86 chr3L:18020981-18021101 1.1e-05 36_[+1]_76 chr2L:20341761-20341881 1.1e-05 74_[+1]_38 chrX:17149115-17149235 1.4e-05 48_[+1]_64 chr3L:19132764-19132884 1.6e-05 101_[+1]_11 chr3R:31134185-31134305 2.1e-05 1_[+1]_111 chr2R:10023836-10023956 3.9e-05 [+1]_112 chr3L:5807511-5807631 3.9e-05 61_[+1]_51 chrX:5095697-5095817 4.7e-05 2_[+1]_110 chrX:6800958-6801078 5.3e-05 43_[+1]_69 chr3L:10679816-10679936 5.3e-05 98_[+1]_14 chr3L:3801444-3801564 5.3e-05 12_[+1]_100 chr3L:14804770-14804890 5.3e-05 62_[+1]_50 chr3R:10352347-10352467 5.3e-05 51_[+1]_61 chr3L:8683944-8684064 6.5e-05 97_[+1]_15 chr2L:4928528-4928648 6.5e-05 62_[+1]_50 chr2L:4829152-4829272 7.3e-05 33_[+1]_79 chr3R:7139535-7139655 7.3e-05 82_[+1]_30 chr3R:24010902-24011022 7.8e-05 7_[+1]_105 chr3R:26859442-26859562 9.6e-05 95_[+1]_17 chrX:19353141-19353261 9.9e-05 13_[+1]_99 chr2L:10143474-10143594 0.00012 101_[+1]_11 chr2R:14487718-14487838 0.00012 47_[+1]_65 chrX:1476723-1476843 0.00012 7_[+1]_105 chr2R:7070928-7071048 0.00013 79_[+1]_33 chr3R:7130982-7131102 0.00015 29_[+1]_83 chr3L:11049536-11049656 0.00015 94_[+1]_18 chr3R:17966154-17966274 0.0002 19_[+1]_93 chr3R:9581181-9581301 0.00021 99_[+1]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGCBGCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CMGCBGCC width=8 seqs=35 chrX:16573810-16573930 ( 69) CCGCCGCC 1 chr2R:18539957-18540077 ( 28) CCGCCGCC 1 chr3R:5696501-5696621 ( 91) CAGCCGCC 1 chr2L:4936473-4936593 ( 54) CAGCCGCC 1 chrX:9156498-9156618 ( 8) CAGCGGCC 1 chrX:5664314-5664434 ( 26) CAGCGGCC 1 chr2R:14031569-14031689 ( 27) CCGCTGCC 1 chr3L:18020981-18021101 ( 37) CCGCTGCC 1 chr2L:20341761-20341881 ( 75) CAGCTGCC 1 chrX:17149115-17149235 ( 49) CCCCCGCC 1 chr3L:19132764-19132884 ( 102) CCGCCCCC 1 chr3R:31134185-31134305 ( 2) CAGGCGCC 1 chr2R:10023836-10023956 ( 1) CACCTGCC 1 chr3L:5807511-5807631 ( 62) CAGGGGCC 1 chrX:5095697-5095817 ( 3) CCGCGGGC 1 chrX:6800958-6801078 ( 44) CTGCTGCC 1 chr3L:10679816-10679936 ( 99) CACCCCCC 1 chr3L:3801444-3801564 ( 13) CACCCCCC 1 chr3L:14804770-14804890 ( 63) CACCCCCC 1 chr3R:10352347-10352467 ( 52) CTGCTGCC 1 chr3L:8683944-8684064 ( 98) CAGGTGCC 1 chr2L:4928528-4928648 ( 63) GCGCCGCC 1 chr2L:4829152-4829272 ( 34) CAGCTGGC 1 chr3R:7139535-7139655 ( 83) CACGCGCC 1 chr3R:24010902-24011022 ( 8) CAGGCCCC 1 chr3R:26859442-26859562 ( 96) CTGCGCCC 1 chrX:19353141-19353261 ( 14) GAGCGGCC 1 chr2L:10143474-10143594 ( 102) CTCCTGCC 1 chr2R:14487718-14487838 ( 48) CAGCGCGC 1 chrX:1476723-1476843 ( 8) CCGCGCGC 1 chr2R:7070928-7071048 ( 80) CTGCGGGC 1 chr3R:7130982-7131102 ( 30) CCGACGCC 1 chr3L:11049536-11049656 ( 95) CAACCGCC 1 chr3R:17966154-17966274 ( 20) CCGTTGCC 1 chr3R:9581181-9581301 ( 100) CACTCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGCBGCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4775 E= 6.7e+000 -1177 240 -162 -1177 74 82 -1177 -117 -350 36 208 -1177 -350 211 -30 -249 -1177 136 55 -17 -1177 36 214 -1177 -1177 226 -30 -1177 -1177 249 -1177 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGCBGCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 6.7e+000 0.000000 0.942857 0.057143 0.000000 0.542857 0.314286 0.000000 0.142857 0.028571 0.228571 0.742857 0.000000 0.028571 0.771429 0.142857 0.057143 0.000000 0.457143 0.257143 0.285714 0.000000 0.228571 0.771429 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGCBGCC MEME-1 regular expression -------------------------------------------------------------------------------- C[AC][GC]C[CTG][GC]CC -------------------------------------------------------------------------------- Time 7.57 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGGYGG MEME-2 width = 8 sites = 7 llr = 80 E-value = 1.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGGYGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::7:13:: probability G aa:a91aa matrix T ::3::6:: bits 2.5 ** * ** 2.3 ** * ** 2.0 ** ** ** 1.8 ** ** ** Relative 1.5 ** ** ** Entropy 1.3 ***** ** (16.5 bits) 1.0 ***** ** 0.8 ***** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCGGTGG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGYGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19268829-19268949 84 1.66e-06 GGGCTGCTGT GGCGGTGG GCCTGTTGGA chr3L:19132764-19132884 23 1.66e-06 AGCGCCCCCT GGCGGTGG GAAGCGACAG chr3L:5807511-5807631 53 2.58e-06 TCATTGAAGA GGCGGCGG CCAGGGGCCG chr2R:24281801-24281921 31 3.48e-06 ACACATATGT GGCGGGGG ATTGCGAGGG chrX:13626023-13626143 34 6.45e-06 GCAAAAAATG GGTGGTGG TGAACCTTTG chr2L:7940789-7940909 92 6.45e-06 AGAGGAAGTG GGTGGTGG GGCGGAAACG chr2R:17604641-17604761 112 1.07e-05 ATCGGCTATT GGCGCCGG A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGYGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19268829-19268949 1.7e-06 83_[+2]_29 chr3L:19132764-19132884 1.7e-06 22_[+2]_90 chr3L:5807511-5807631 2.6e-06 52_[+2]_60 chr2R:24281801-24281921 3.5e-06 30_[+2]_82 chrX:13626023-13626143 6.5e-06 33_[+2]_79 chr2L:7940789-7940909 6.5e-06 91_[+2]_21 chr2R:17604641-17604761 1.1e-05 111_[+2]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGYGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGGYGG width=8 seqs=7 chrX:19268829-19268949 ( 84) GGCGGTGG 1 chr3L:19132764-19132884 ( 23) GGCGGTGG 1 chr3L:5807511-5807631 ( 53) GGCGGCGG 1 chr2R:24281801-24281921 ( 31) GGCGGGGG 1 chrX:13626023-13626143 ( 34) GGTGGTGG 1 chr2L:7940789-7940909 ( 92) GGTGGTGG 1 chr2R:17604641-17604761 ( 112) GGCGCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGYGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.2008 E= 1.0e+003 -945 -945 251 -945 -945 -945 251 -945 -945 200 -945 -17 -945 -945 251 -945 -945 -32 229 -945 -945 68 -30 83 -945 -945 251 -945 -945 -945 251 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGYGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.0e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.000000 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 0.285714 0.142857 0.571429 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGYGG MEME-2 regular expression -------------------------------------------------------------------------------- GG[CT]GG[TC]GG -------------------------------------------------------------------------------- Time 13.85 secs. ******************************************************************************** ******************************************************************************** MOTIF GMGCSAGC MEME-3 width = 8 sites = 14 llr = 141 E-value = 2.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GMGCSAGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :4:3:9:: pos.-specific C :6:74::a probability G 9:a:6:a: matrix T 1::::1:: bits 2.5 * ** 2.3 * ** 2.0 * ** 1.8 * * ** Relative 1.5 * * * ** Entropy 1.3 ***** ** (14.5 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGCGAGC consensus A AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCSAGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:9581181-9581301 86 1.74e-06 GAGCTTTAAC GCGCGAGC TTTGCTCACT chr3R:26859442-26859562 63 3.53e-06 GTACAAGTAA GCGCCAGC TTGTTTACAA chr2R:21549102-21549222 83 3.53e-06 TGCGCATTGT GCGCCAGC AACTGTGCAA chr3R:31134185-31134305 56 6.68e-06 tagagctcga gagcgagC TTCTGGTTTC chrX:5664314-5664434 61 6.68e-06 CATTCAACGG GAGCGAGC GGAAGTGCGC chr3R:23963003-23963123 90 9.83e-06 GCGGGACGCA GCGAGAGC GCCAGGCGGA chr2R:12547750-12547870 106 1.16e-05 ACTGTATGTG GCGCGTGC CTGGGCC chr2L:12549127-12549247 104 1.16e-05 CGCAGGAGCA GCGCGTGC AACGTGCCA chr2L:12003081-12003201 42 1.48e-05 TTTGCGCGAT GAGCCAGC AAGGCAGCTA chr3L:19132764-19132884 34 1.80e-05 GCGGTGGGAA GCGACAGC ACACATGAAC chr2L:552623-552743 19 2.30e-05 GCCACTCGGC TCGCGAGC TTTCGCTCTC chr3R:24651233-24651353 103 2.87e-05 gagagagaga gagagagC CCCACGTAGT chr2L:7940789-7940909 31 2.87e-05 gaaTCGGCTG GAGAGAGC AAGAGCGGAA chr2R:18539957-18540077 73 3.51e-05 AGAGCGGCAG TCGCCAGC GGAAACGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCSAGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:9581181-9581301 1.7e-06 85_[+3]_27 chr3R:26859442-26859562 3.5e-06 62_[+3]_50 chr2R:21549102-21549222 3.5e-06 82_[+3]_30 chr3R:31134185-31134305 6.7e-06 55_[+3]_57 chrX:5664314-5664434 6.7e-06 60_[+3]_52 chr3R:23963003-23963123 9.8e-06 89_[+3]_23 chr2R:12547750-12547870 1.2e-05 105_[+3]_7 chr2L:12549127-12549247 1.2e-05 103_[+3]_9 chr2L:12003081-12003201 1.5e-05 41_[+3]_71 chr3L:19132764-19132884 1.8e-05 33_[+3]_79 chr2L:552623-552743 2.3e-05 18_[+3]_94 chr3R:24651233-24651353 2.9e-05 102_[+3]_10 chr2L:7940789-7940909 2.9e-05 30_[+3]_82 chr2R:18539957-18540077 3.5e-05 72_[+3]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCSAGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GMGCSAGC width=8 seqs=14 chr3R:9581181-9581301 ( 86) GCGCGAGC 1 chr3R:26859442-26859562 ( 63) GCGCCAGC 1 chr2R:21549102-21549222 ( 83) GCGCCAGC 1 chr3R:31134185-31134305 ( 56) GAGCGAGC 1 chrX:5664314-5664434 ( 61) GAGCGAGC 1 chr3R:23963003-23963123 ( 90) GCGAGAGC 1 chr2R:12547750-12547870 ( 106) GCGCGTGC 1 chr2L:12549127-12549247 ( 104) GCGCGTGC 1 chr2L:12003081-12003201 ( 42) GAGCCAGC 1 chr3L:19132764-19132884 ( 34) GCGACAGC 1 chr2L:552623-552743 ( 19) TCGCGAGC 1 chr3R:24651233-24651353 ( 103) GAGAGAGC 1 chr2L:7940789-7940909 ( 31) GAGAGAGC 1 chr2R:18539957-18540077 ( 73) TCGCCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCSAGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 2.6e+003 -1045 -1045 229 -117 14 185 -1045 -1045 -1045 -1045 251 -1045 -18 200 -1045 -1045 -1045 100 187 -1045 140 -1045 -1045 -117 -1045 -1045 251 -1045 -1045 248 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCSAGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 2.6e+003 0.000000 0.000000 0.857143 0.142857 0.357143 0.642857 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.285714 0.714286 0.000000 0.000000 0.000000 0.357143 0.642857 0.000000 0.857143 0.000000 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCSAGC MEME-3 regular expression -------------------------------------------------------------------------------- G[CA]G[CA][GC]AGC -------------------------------------------------------------------------------- Time 20.11 secs. ******************************************************************************** ******************************************************************************** MOTIF SCACHCAS MEME-4 width = 8 sites = 25 llr = 226 E-value = 2.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCACHCAS MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a:4:6: pos.-specific C 5a:a2a26 probability G 5:::::24 matrix T ::::4::: bits 2.5 * * * 2.3 * * * 2.0 * * * 1.8 * * * Relative 1.5 **** * * Entropy 1.3 **** * * (13.1 bits) 1.0 **** * * 0.8 **** *** 0.5 **** *** 0.3 ******** 0.0 -------- Multilevel CCACACAC consensus G T GG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACHCAS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:15134175-15134295 4 3.45e-06 CAC CCACCCAC CTTTGATGAT chrX:19353141-19353261 107 3.45e-06 AGCGCATCGC CCACCCAC ATACAC chr2L:4936473-4936593 105 3.45e-06 CGCCATCGTA CCACCCAC CGACCTTC chr3L:11049536-11049656 62 1.31e-05 AAACAGGGGA GCACCCAC CCATCCGATA chr2R:7984185-7984305 113 2.54e-05 CCTCCCACTC GCACACAC chr3L:18994617-18994737 26 2.54e-05 GTTTCTACTT CCACTCAC TTCTTGGCGT chr3R:24651233-24651353 74 2.54e-05 TTTCAGATTT GCACACAC ACagagaaag chr3R:24051772-24051892 23 2.54e-05 AACCAAAATC CCACTCAC CGAATGCTGG chr3R:31777808-31777928 85 2.54e-05 AAACTCAAAC GCACACAC AAAAAGAGAG chr2R:24281801-24281921 15 2.54e-05 CTTGTCATTC GCACACAC ACATATGTGG chrX:7995283-7995403 87 2.54e-05 GCGTGCACAC GCACACAC GTGTGCCAGT chr3R:10352347-10352467 110 2.54e-05 CGGCCCCAGC GCACACAC ACC chr3R:14479750-14479870 16 5.13e-05 ATTTTATCAA GCACCCAG CACAAGTGTT chr3R:23963003-23963123 5 7.19e-05 GCAC GCACACAG GAATTCGGCG chr3R:5300778-5300898 100 7.19e-05 GGGCGTTTCT CCACTCGC AGCGACTTAT chr3R:14290162-14290282 113 7.19e-05 TCGACTGTac ccactcgc chr2R:21659985-21660105 20 8.65e-05 AGCAGTGTCA CCACACCC CGGCGGAAAC chr3L:2647809-2647929 85 8.65e-05 AAAGATATTT GCACTCAG CGCAGCTATT chr3R:28020676-28020796 22 8.65e-05 TTTCCACATT GCACTCAG AAAAAAAAAC chr3L:16969858-16969978 73 9.33e-05 CCATCCCGCT CCACTCCC GACCCGCAAA chr2L:6465631-6465751 1 1.04e-04 . GCACCCGG ATTCCGCAGA chr3L:18833383-18833503 96 1.04e-04 CACATATTGT CCACACGG CTTTTGTTGT chr2L:552623-552743 10 1.12e-04 CGGCGTTTG CCACTCGG CTCGCGAGCT chr3R:24010902-24011022 25 1.20e-04 CACACCCAAC CCACACCG AAAAAATATA chr2R:9060127-9060247 42 1.27e-04 GCGAAAGTTG CCACTCCG TCGGGTCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACHCAS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15134175-15134295 3.5e-06 3_[+4]_109 chrX:19353141-19353261 3.5e-06 106_[+4]_6 chr2L:4936473-4936593 3.5e-06 104_[+4]_8 chr3L:11049536-11049656 1.3e-05 61_[+4]_51 chr2R:7984185-7984305 2.5e-05 112_[+4] chr3L:18994617-18994737 2.5e-05 25_[+4]_87 chr3R:24651233-24651353 2.5e-05 73_[+4]_39 chr3R:24051772-24051892 2.5e-05 22_[+4]_90 chr3R:31777808-31777928 2.5e-05 84_[+4]_28 chr2R:24281801-24281921 2.5e-05 14_[+4]_98 chrX:7995283-7995403 2.5e-05 86_[+4]_26 chr3R:10352347-10352467 2.5e-05 109_[+4]_3 chr3R:14479750-14479870 5.1e-05 15_[+4]_97 chr3R:23963003-23963123 7.2e-05 4_[+4]_108 chr3R:5300778-5300898 7.2e-05 99_[+4]_13 chr3R:14290162-14290282 7.2e-05 112_[+4] chr2R:21659985-21660105 8.6e-05 19_[+4]_93 chr3L:2647809-2647929 8.6e-05 84_[+4]_28 chr3R:28020676-28020796 8.6e-05 21_[+4]_91 chr3L:16969858-16969978 9.3e-05 72_[+4]_40 chr2L:6465631-6465751 0.0001 [+4]_112 chr3L:18833383-18833503 0.0001 95_[+4]_17 chr2L:552623-552743 0.00011 9_[+4]_103 chr3R:24010902-24011022 0.00012 24_[+4]_88 chr2R:9060127-9060247 0.00013 41_[+4]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACHCAS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCACHCAS width=8 seqs=25 chr2R:15134175-15134295 ( 4) CCACCCAC 1 chrX:19353141-19353261 ( 107) CCACCCAC 1 chr2L:4936473-4936593 ( 105) CCACCCAC 1 chr3L:11049536-11049656 ( 62) GCACCCAC 1 chr2R:7984185-7984305 ( 113) GCACACAC 1 chr3L:18994617-18994737 ( 26) CCACTCAC 1 chr3R:24651233-24651353 ( 74) GCACACAC 1 chr3R:24051772-24051892 ( 23) CCACTCAC 1 chr3R:31777808-31777928 ( 85) GCACACAC 1 chr2R:24281801-24281921 ( 15) GCACACAC 1 chrX:7995283-7995403 ( 87) GCACACAC 1 chr3R:10352347-10352467 ( 110) GCACACAC 1 chr3R:14479750-14479870 ( 16) GCACCCAG 1 chr3R:23963003-23963123 ( 5) GCACACAG 1 chr3R:5300778-5300898 ( 100) CCACTCGC 1 chr3R:14290162-14290282 ( 113) CCACTCGC 1 chr2R:21659985-21660105 ( 20) CCACACCC 1 chr3L:2647809-2647929 ( 85) GCACTCAG 1 chr3R:28020676-28020796 ( 22) GCACTCAG 1 chr3L:16969858-16969978 ( 73) CCACTCCC 1 chr2L:6465631-6465751 ( 1) GCACCCGG 1 chr3L:18833383-18833503 ( 96) CCACACGG 1 chr2L:552623-552743 ( 10) CCACTCGG 1 chr3R:24010902-24011022 ( 25) CCACACCG 1 chr2R:9060127-9060247 ( 42) CCACTCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACHCAS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2744 E= 2.7e+003 -1129 154 145 -1129 -1129 249 -1129 -1129 162 -1129 -1129 -1129 -1129 249 -1129 -1129 30 43 -1129 16 -1129 249 -1129 -1129 98 -16 19 -1129 -1129 184 104 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACHCAS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 2.7e+003 0.000000 0.520000 0.480000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.240000 0.000000 0.360000 0.000000 1.000000 0.000000 0.000000 0.640000 0.160000 0.200000 0.000000 0.000000 0.640000 0.360000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACHCAS MEME-4 regular expression -------------------------------------------------------------------------------- [CG]CAC[ATC]C[AG][CG] -------------------------------------------------------------------------------- Time 26.31 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCTGTT MEME-5 width = 8 sites = 12 llr = 126 E-value = 4.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C a::a::31 probability G ::a::a:2 matrix T ::::a:88 bits 2.5 * ** * 2.3 * ** * 2.0 * ** * 1.8 * **** Relative 1.5 ****** Entropy 1.3 ****** (15.1 bits) 1.0 ******* 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGCTGTT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:11580082-11580202 73 1.06e-05 GATAATAACA CAGCTGTT CAAATTGCCA chr3L:10679816-10679936 88 1.06e-05 CGAAGAAAAA CAGCTGTT AAACACCCCC chr3L:17843412-17843532 95 1.06e-05 AGAATTAAAG CAGCTGTT GGCGCCTGTT chr2R:24275496-24275616 110 1.06e-05 ACAGCCGGAA CAGCTGTT CCA chr2R:9060127-9060247 56 1.06e-05 TCCGTCGGGT CAGCTGTT TGGTCCTAAA chr2L:4928528-4928648 32 1.06e-05 GCCGAAGTCG CAGCTGTT TTCGGTTGAA chr2L:11203747-11203867 77 1.65e-05 GAACTTCTAT CAGCTGCT CAATAGTTTT chr3L:15814145-15814265 62 1.65e-05 AATATTTTAT CAGCTGCT TTTGGTCTAT chr2R:14487718-14487838 38 1.65e-05 TACATATGAC CAGCTGCT TGCAGCGCGC chr3L:19845646-19845766 88 2.23e-05 AATTCACCTA CAGCTGTG GAATATGTTT chr2R:24281801-24281921 96 2.23e-05 AAAGCACATG CAGCTGTG CTGTGATTTC chrX:3273692-3273812 71 3.14e-05 GGAATATTGA CAGCTGTC GGTCGATCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:11580082-11580202 1.1e-05 72_[+5]_40 chr3L:10679816-10679936 1.1e-05 87_[+5]_25 chr3L:17843412-17843532 1.1e-05 94_[+5]_18 chr2R:24275496-24275616 1.1e-05 109_[+5]_3 chr2R:9060127-9060247 1.1e-05 55_[+5]_57 chr2L:4928528-4928648 1.1e-05 31_[+5]_81 chr2L:11203747-11203867 1.7e-05 76_[+5]_36 chr3L:15814145-15814265 1.7e-05 61_[+5]_51 chr2R:14487718-14487838 1.7e-05 37_[+5]_75 chr3L:19845646-19845766 2.2e-05 87_[+5]_25 chr2R:24281801-24281921 2.2e-05 95_[+5]_17 chrX:3273692-3273812 3.1e-05 70_[+5]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCTGTT width=8 seqs=12 chr3L:11580082-11580202 ( 73) CAGCTGTT 1 chr3L:10679816-10679936 ( 88) CAGCTGTT 1 chr3L:17843412-17843532 ( 95) CAGCTGTT 1 chr2R:24275496-24275616 ( 110) CAGCTGTT 1 chr2R:9060127-9060247 ( 56) CAGCTGTT 1 chr2L:4928528-4928648 ( 32) CAGCTGTT 1 chr2L:11203747-11203867 ( 77) CAGCTGCT 1 chr3L:15814145-15814265 ( 62) CAGCTGCT 1 chr2R:14487718-14487838 ( 38) CAGCTGCT 1 chr3L:19845646-19845766 ( 88) CAGCTGTG 1 chr2R:24281801-24281921 ( 96) CAGCTGTG 1 chrX:3273692-3273812 ( 71) CAGCTGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.97718 E= 4.2e+003 -1023 248 -1023 -1023 162 -1023 -1023 -1023 -1023 -1023 251 -1023 -1023 248 -1023 -1023 -1023 -1023 -1023 164 -1023 -1023 251 -1023 -1023 49 -1023 122 -1023 -110 -7 122 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 4.2e+003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.083333 0.166667 0.750000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-5 regular expression -------------------------------------------------------------------------------- CAGCTG[TC]T -------------------------------------------------------------------------------- Time 32.46 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:7139336-7139456 2.55e-03 120 chrX:1476723-1476843 1.33e-03 120 chr3R:24474920-24475040 9.42e-01 120 chr2L:4936473-4936593 5.65e-07 53_[+1(2.83e-06)]_43_[+4(3.45e-06)]_\ 8 chr3R:10352347-10352467 9.61e-06 51_[+1(5.33e-05)]_13_[+5(6.18e-05)]_\ 29_[+4(2.54e-05)]_3 chr3R:7139535-7139655 4.27e-04 82_[+1(7.26e-05)]_30 chr2L:4928528-4928648 2.91e-04 31_[+5(1.06e-05)]_23_[+1(6.48e-05)]_\ 50 chrX:6439642-6439762 9.75e-01 120 chr2R:21417181-21417301 4.61e-01 120 chr2L:3755292-3755412 9.86e-01 120 chr3R:5696501-5696621 3.16e-05 57_[+2(2.85e-05)]_7_[+1(3.92e-05)]_\ 10_[+1(2.83e-06)]_22 chr2R:17918892-17919012 7.63e-01 120 chr3L:2913439-2913559 8.48e-01 120 chr3R:12543080-12543200 8.67e-01 120 chr2R:22787610-22787730 9.98e-01 120 chr3L:17310634-17310754 9.72e-01 120 chr3R:28118241-28118361 6.03e-01 120 chr3L:17539066-17539186 2.11e-01 120 chrX:12073787-12073907 9.63e-01 120 chr3R:25152490-25152610 1.00e+00 120 chr3R:29651612-29651732 9.92e-01 120 chr2R:15515770-15515890 9.94e-01 120 chr2L:15179148-15179268 7.45e-01 120 chr3R:13600700-13600820 6.15e-01 120 chr3R:25855775-25855895 4.68e-01 120 chr2L:1230836-1230956 9.57e-01 120 chr2R:23154712-23154832 2.76e-01 120 chr2L:14141394-14141514 9.51e-01 120 chr3R:17526186-17526306 3.32e-01 120 chr3R:11243216-11243336 7.38e-01 120 chr3L:10827497-10827617 9.96e-01 120 chr3R:12591835-12591955 8.03e-01 120 chr2L:20840598-20840718 1.19e-03 17_[+3(8.61e-05)]_48_[+3(6.53e-05)]_\ 39 chr3R:9581181-9581301 1.37e-04 85_[+3(1.74e-06)]_27 chr3L:17113342-17113462 3.06e-01 120 chrX:3273692-3273812 5.82e-04 24_[+2(1.24e-05)]_38_[+5(3.14e-05)]_\ 42 chrX:9520337-9520457 1.00e+00 120 chr3R:25854933-25855053 5.82e-01 120 chr2L:13049263-13049383 4.07e-02 120 chrX:7995283-7995403 1.03e-03 86_[+4(2.54e-05)]_26 chr2L:3939019-3939139 2.03e-01 120 chr3R:29978754-29978874 7.56e-01 120 chr3L:5297346-5297466 8.98e-01 120 chr3R:25968641-25968761 9.60e-01 120 chrX:12870077-12870197 8.12e-01 120 chr2R:24281801-24281921 1.14e-06 14_[+4(2.54e-05)]_8_[+2(3.48e-06)]_\ 57_[+5(2.23e-05)]_17 chr3R:28959212-28959332 9.99e-01 120 chr2L:2501997-2502117 2.12e-01 105_[+2(3.46e-05)]_7 chr3R:30325606-30325726 2.45e-01 120 chr3R:26333405-26333525 1.00e+00 120 chr3L:13903374-13903494 7.53e-01 120 chr2L:20808317-20808437 9.88e-01 120 chr2R:13723352-13723472 4.13e-01 120 chr2R:12739843-12739963 7.48e-01 120 chrX:10184816-10184936 9.71e-01 120 chr2R:9060127-9060247 1.50e-03 55_[+5(1.06e-05)]_57 chr3L:5182358-5182478 8.85e-01 120 chr3R:24467388-24467508 9.74e-01 120 chr2L:9509752-9509872 1.46e-01 120 chr3R:9857963-9858083 9.98e-01 120 chrX:5664314-5664434 7.85e-06 25_[+1(5.60e-06)]_27_[+3(6.68e-06)]_\ 52 chr3R:26671811-26671931 2.34e-01 120 chr3R:26280506-26280626 6.17e-01 120 chr2R:22616871-22616991 2.84e-01 120 chr3L:16146684-16146804 9.01e-01 120 chr2L:19930218-19930338 6.55e-02 120 chrX:3594420-3594540 1.00e+00 120 chr3R:16476588-16476708 9.71e-01 120 chrX:23004941-23005061 8.10e-01 120 chr2R:7749753-7749873 7.60e-02 120 chr2L:85212-85332 6.66e-01 120 chr3L:14804770-14804890 1.01e-02 62_[+1(5.33e-05)]_50 chr2R:18539957-18540077 9.62e-06 24_[+1(2.83e-06)]_40_[+3(3.51e-05)]_\ 40 chr3L:15923481-15923601 8.14e-01 120 chr3R:27813366-27813486 9.99e-01 120 chr3L:21321933-21322053 5.99e-01 120 chr2R:24275496-24275616 7.45e-06 70_[+2(1.97e-05)]_31_[+5(1.06e-05)]_\ 3 chr2R:22789410-22789530 9.98e-01 120 chr3L:11863706-11863826 9.51e-01 120 chr2R:22508146-22508266 7.31e-01 120 chr3L:11528500-11528620 6.54e-02 85_[+2(7.71e-05)]_27 chr3R:9083555-9083675 9.78e-01 120 chr2L:18267962-18268082 8.40e-01 120 chr2L:12549127-12549247 2.22e-02 103_[+3(1.16e-05)]_9 chrX:18468030-18468150 4.39e-02 120 chr2L:3228872-3228992 7.31e-01 120 chr3R:7821739-7821859 2.76e-01 120 chr2L:9864410-9864530 5.28e-01 120 chr2R:22390370-22390490 5.28e-01 120 chr2R:16916223-16916343 9.77e-01 120 chr2R:12218902-12219022 9.90e-01 120 chr3L:3801444-3801564 4.48e-03 12_[+1(5.33e-05)]_100 chr2L:14011783-14011903 2.91e-01 120 chr3R:28020676-28020796 3.45e-01 21_[+4(8.65e-05)]_91 chr2R:21895088-21895208 2.45e-01 120 chr2R:17604641-17604761 4.73e-03 111_[+2(1.07e-05)]_1 chr3R:5746781-5746901 6.44e-02 120 chr3L:917375-917495 8.72e-01 120 chr2L:20341761-20341881 2.71e-04 74_[+1(1.07e-05)]_38 chr3R:17966154-17966274 3.66e-01 120 chr3R:29626044-29626164 7.66e-02 120 chr3L:2647809-2647929 7.92e-03 84_[+4(8.65e-05)]_28 chr3R:17955856-17955976 7.97e-01 120 chr3L:17843412-17843532 7.66e-04 94_[+5(1.06e-05)]_18 chr3R:15117867-15117987 9.46e-01 120 chr3L:18020981-18021101 8.12e-03 36_[+1(1.07e-05)]_76 chr2R:11144970-11145090 9.61e-01 120 chr3L:2845322-2845442 9.99e-01 120 chr3R:25275486-25275606 6.86e-01 120 chr2R:23656736-23656856 5.89e-01 120 chr2L:20951426-20951546 9.78e-01 120 chr2L:4861655-4861775 3.32e-01 120 chr2L:13156441-13156561 8.54e-01 120 chr3L:16543410-16543530 1.72e-01 120 chr3L:11049536-11049656 6.71e-03 61_[+4(1.31e-05)]_51 chr3L:1139542-1139662 9.16e-01 120 chr3R:23284399-23284519 3.86e-03 97_[+3(7.69e-05)]_15 chr2L:5096978-5097098 5.14e-02 120 chrX:966957-967077 1.00e+00 120 chr3L:3078940-3079060 7.51e-02 120 chr2R:12547750-12547870 2.80e-03 105_[+3(1.16e-05)]_7 chrX:16573810-16573930 3.34e-03 68_[+1(2.83e-06)]_44 chr3R:31777808-31777928 2.49e-02 84_[+4(2.54e-05)]_28 chr3R:7129516-7129636 8.29e-01 120 chr3R:31636670-31636790 7.08e-01 120 chrX:19453272-19453392 9.59e-01 120 chr3L:19216525-19216645 9.84e-01 120 chrX:18004357-18004477 9.17e-01 120 chrX:14727656-14727776 1.46e-01 120 chr3R:26494413-26494533 1.00e+00 120 chr3L:19845646-19845766 3.88e-03 87_[+5(2.23e-05)]_25 chr3R:7130982-7131102 1.13e-01 120 chr2R:19971454-19971574 1.92e-01 120 chr3L:13912864-13912984 1.00e+00 120 chrX:17465675-17465795 6.54e-01 120 chr3L:2410976-2411096 9.98e-01 120 chr2L:4829152-4829272 3.55e-03 33_[+1(7.26e-05)]_79 chr3R:14290162-14290282 6.50e-02 112_[+4(7.19e-05)] chr3L:19132764-19132884 7.49e-08 22_[+2(1.66e-06)]_3_[+3(1.80e-05)]_\ 46_[+1(1.83e-05)]_6_[+1(1.65e-05)]_11 chr2L:4133216-4133336 8.71e-01 120 chr3L:19071535-19071655 9.97e-01 120 chr2R:14487718-14487838 5.18e-04 37_[+5(1.65e-05)]_75 chr3R:26105959-26106079 6.00e-01 120 chr2R:21659985-21660105 2.12e-02 19_[+4(8.65e-05)]_93 chr3R:24051772-24051892 1.35e-03 22_[+4(2.54e-05)]_90 chr2R:21549102-21549222 5.19e-04 82_[+3(3.53e-06)]_30 chr3R:29089793-29089913 9.74e-01 120 chrX:5095697-5095817 1.04e-01 2_[+1(4.71e-05)]_110 chr3L:3411858-3411978 9.85e-01 120 chr3L:20406418-20406538 9.65e-01 120 chr2R:24028437-24028557 2.48e-01 120 chrX:8112887-8113007 8.97e-01 120 chr3R:26859442-26859562 3.76e-04 62_[+3(3.53e-06)]_25_[+1(9.62e-05)]_\ 17 chr2L:7940789-7940909 1.74e-04 30_[+3(2.87e-05)]_53_[+2(6.45e-06)]_\ 21 chr2L:19285617-19285737 9.31e-01 120 chr2R:17085647-17085767 7.93e-01 120 chr3L:1737998-1738118 2.50e-02 61_[+3(7.12e-05)]_51 chr3R:26555954-26556074 8.89e-01 120 chr3R:24651233-24651353 1.23e-03 73_[+4(2.54e-05)]_21_[+3(2.87e-05)]_\ 10 chrX:20503286-20503406 8.25e-01 120 chr3R:17605179-17605299 8.29e-01 120 chr2R:8002303-8002423 1.00e+00 120 chr3R:15366928-15367048 9.98e-01 120 chr2R:8150842-8150962 7.76e-02 120 chr2L:12063156-12063276 9.82e-03 20_[+5(6.18e-05)]_92 chr2R:24139216-24139336 5.23e-01 120 chrX:13676676-13676796 1.00e+00 120 chr3L:11450648-11450768 1.00e+00 120 chr2R:10122602-10122722 4.38e-01 120 chr2R:10194994-10195114 7.14e-01 120 chr3L:18994617-18994737 4.28e-03 25_[+4(2.54e-05)]_87 chr2L:12003081-12003201 2.41e-03 41_[+3(1.48e-05)]_71 chr3R:4360810-4360930 2.67e-02 120 chrX:17149115-17149235 8.85e-03 48_[+1(1.36e-05)]_64 chr2R:14031569-14031689 1.26e-04 26_[+1(1.07e-05)]_86 chr2R:16848445-16848565 2.03e-01 120 chr3R:5300778-5300898 3.69e-04 99_[+4(7.19e-05)]_13 chr2L:22144289-22144409 2.58e-01 28_[+2(3.46e-05)]_84 chr3L:12269979-12270099 4.94e-01 120 chr2R:22387346-22387466 2.80e-01 120 chr3L:15034390-15034510 7.76e-01 120 chr3L:15814145-15814265 9.78e-03 61_[+5(1.65e-05)]_51 chr3L:18833383-18833503 2.98e-02 120 chrX:11379261-11379381 9.15e-01 120 chr2R:7070928-7071048 7.43e-03 120 chr3L:8683944-8684064 2.39e-03 97_[+1(6.48e-05)]_15 chr3L:3932866-3932986 7.36e-01 120 chr2L:937049-937169 1.25e-01 120 chr3R:9938624-9938744 7.61e-01 120 chr2L:11203747-11203867 8.80e-03 76_[+5(1.65e-05)]_36 chr3L:10679816-10679936 1.37e-04 87_[+5(1.06e-05)]_3_[+1(5.33e-05)]_\ 14 chr2L:9493411-9493531 9.07e-01 120 chr2R:18172005-18172125 2.70e-01 120 chr3R:13644805-13644925 8.06e-01 120 chrX:9156498-9156618 9.30e-04 7_[+1(5.60e-06)]_105 chrX:12937956-12938076 1.00e+00 120 chr2L:13461045-13461165 3.95e-01 120 chr3L:6609292-6609412 5.49e-02 120 chrX:3019751-3019871 7.03e-01 120 chr2R:15155052-15155172 9.98e-01 120 chr2R:14574205-14574325 4.23e-01 120 chr2R:7879039-7879159 7.50e-01 120 chr2L:117887-118007 8.15e-01 120 chr3L:5807511-5807631 5.38e-06 52_[+2(2.58e-06)]_1_[+1(3.92e-05)]_\ 51 chr3R:14657167-14657287 9.03e-01 120 chr2L:13203941-13204061 6.95e-02 120 chrX:13626023-13626143 7.82e-02 33_[+2(6.45e-06)]_79 chrX:10573703-10573823 4.68e-01 120 chr3R:5413123-5413243 8.58e-01 120 chr3R:9430501-9430621 5.37e-01 120 chr2L:20715118-20715238 7.48e-01 120 chr3L:16202597-16202717 8.91e-01 120 chr2L:10760753-10760873 1.00e+00 120 chrX:6375798-6375918 9.01e-01 120 chrX:8542134-8542254 9.87e-01 120 chr2R:24629552-24629672 7.61e-01 120 chr2R:10023836-10023956 5.36e-03 [+1(3.92e-05)]_112 chr2L:18966974-18967094 9.98e-01 120 chr2L:16647892-16648012 1.00e+00 120 chr2R:7984185-7984305 7.71e-04 112_[+4(2.54e-05)] chr2R:13430043-13430163 4.06e-01 120 chr3L:19847095-19847215 1.80e-01 120 chrX:19353141-19353261 9.14e-06 13_[+1(9.89e-05)]_85_[+4(3.45e-06)]_\ 6 chr2L:552623-552743 1.44e-04 18_[+3(2.30e-05)]_94 chrX:19268829-19268949 2.22e-04 83_[+2(1.66e-06)]_29 chr3L:8689844-8689964 2.57e-02 120 chr3L:11580082-11580202 1.22e-01 72_[+5(1.06e-05)]_40 chr3R:31134185-31134305 1.71e-05 1_[+1(2.11e-05)]_46_[+3(6.68e-06)]_\ 57 chr2R:22661342-22661462 8.54e-01 120 chr2L:10143474-10143594 6.40e-02 120 chr2L:6465631-6465751 1.02e-03 120 chr3R:31810307-31810427 2.86e-01 120 chr3R:9019840-9019960 1.15e-01 120 chr3R:14875605-14875725 4.57e-01 120 chr3R:23963003-23963123 2.01e-05 4_[+4(7.19e-05)]_77_[+3(9.83e-06)]_\ 23 chr2L:12463181-12463301 2.81e-01 120 chr2R:24657148-24657268 7.06e-01 120 chr3R:14479750-14479870 9.14e-02 15_[+4(5.13e-05)]_97 chr2L:10565829-10565949 1.00e+00 120 chrX:16580052-16580172 9.12e-01 120 chr2R:15134175-15134295 7.86e-03 3_[+4(3.45e-06)]_109 chr2L:16544664-16544784 1.00e+00 120 chr3L:16969858-16969978 1.11e-02 72_[+4(9.33e-05)]_40 chr3L:15977664-15977784 9.96e-01 120 chr2L:19490239-19490359 9.20e-01 120 chr3R:24010902-24011022 2.59e-02 7_[+1(7.82e-05)]_105 chrX:6800958-6801078 3.77e-03 32_[+1(8.57e-05)]_3_[+1(5.33e-05)]_\ 69 chrX:9135193-9135313 3.13e-01 120 chrX:6657078-6657198 5.15e-01 120 chr2R:17533787-17533907 8.19e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************