******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Ez.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:1669704-1669824 1.0000 120 chr2L:1644376-1644496 1.0000 120 chr3R:16038138-16038258 1.0000 120 chr2R:19268789-19268909 1.0000 120 chr2R:9988355-9988475 1.0000 120 chr2L:5421842-5421962 1.0000 120 chr2R:13042253-13042373 1.0000 120 chr2R:9194952-9195072 1.0000 120 chr2L:507341-507461 1.0000 120 chr2R:23046155-23046275 1.0000 120 chr3R:31062156-31062276 1.0000 120 chr2R:16386502-16386622 1.0000 120 chr3R:6741896-6742016 1.0000 120 chr2L:595116-595236 1.0000 120 chr2R:12884454-12884574 1.0000 120 chr3R:29526795-29526915 1.0000 120 chr2L:15111527-15111647 1.0000 120 chr3L:14600666-14600786 1.0000 120 chr3L:9019336-9019456 1.0000 120 chr3L:2488777-2488897 1.0000 120 chr3L:21460288-21460408 1.0000 120 chr3L:11927418-11927538 1.0000 120 chr2R:11542137-11542257 1.0000 120 chr3R:25080564-25080684 1.0000 120 chr2L:20783252-20783372 1.0000 120 chr2L:12085889-12086009 1.0000 120 chr3R:18371489-18371609 1.0000 120 chr2R:18109672-18109792 1.0000 120 chr2R:24844910-24845030 1.0000 120 chr2R:20903598-20903718 1.0000 120 chr2R:19268994-19269114 1.0000 120 chr2L:594916-595036 1.0000 120 chr2L:18866753-18866873 1.0000 120 chr2L:3835303-3835423 1.0000 120 chrX:9771125-9771245 1.0000 120 chr3R:16969449-16969569 1.0000 120 chr3R:16523546-16523666 1.0000 120 chr3L:14133113-14133233 1.0000 120 chr3R:13877312-13877432 1.0000 120 chr3L:14579056-14579176 1.0000 120 chr3L:9041133-9041253 1.0000 120 chr3R:16920546-16920666 1.0000 120 chr2L:3540139-3540259 1.0000 120 chr3R:16830134-16830254 1.0000 120 chr2R:13042463-13042583 1.0000 120 chr3R:6683287-6683407 1.0000 120 chr3L:12434687-12434807 1.0000 120 chr3R:8477513-8477633 1.0000 120 chr3R:16899878-16899998 1.0000 120 chr3L:14599658-14599778 1.0000 120 chr2L:1644603-1644723 1.0000 120 chr4:704456-704576 1.0000 120 chr2L:377794-377914 1.0000 120 chr3R:8277943-8278063 1.0000 120 chr2L:1972854-1972974 1.0000 120 chr2R:23637953-23638073 1.0000 120 chr3R:21417046-21417166 1.0000 120 chrX:9774129-9774249 1.0000 120 chr2R:21466239-21466359 1.0000 120 chrX:5593995-5594115 1.0000 120 chr3R:7936838-7936958 1.0000 120 chrX:4462063-4462183 1.0000 120 chr3L:20695288-20695408 1.0000 120 chr2R:12955980-12956100 1.0000 120 chrX:9692796-9692916 1.0000 120 chr3R:7309624-7309744 1.0000 120 chrX:8805861-8805981 1.0000 120 chr3R:29757880-29758000 1.0000 120 chr3R:17944081-17944201 1.0000 120 chr2L:3539355-3539475 1.0000 120 chr2R:18878348-18878468 1.0000 120 chr3R:16782544-16782664 1.0000 120 chr2R:14790613-14790733 1.0000 120 chr4:989513-989633 1.0000 120 chr3L:13403630-13403750 1.0000 120 chr3R:4835425-4835545 1.0000 120 chr3R:6678635-6678755 1.0000 120 chr2R:25061738-25061858 1.0000 120 chr2L:3825481-3825601 1.0000 120 chrX:4554784-4554904 1.0000 120 chr3L:15641722-15641842 1.0000 120 chrX:17397212-17397332 1.0000 120 chrX:8757932-8758052 1.0000 120 chr3R:13843697-13843817 1.0000 120 chr3R:16423493-16423613 1.0000 120 chr3L:19682997-19683117 1.0000 120 chr4:844636-844756 1.0000 120 chrX:10722218-10722338 1.0000 120 chr2L:18869347-18869467 1.0000 120 chr3R:16886535-16886655 1.0000 120 chr3R:6848646-6848766 1.0000 120 chr3L:432672-432792 1.0000 120 chr2R:11475508-11475628 1.0000 120 chr4:508622-508742 1.0000 120 chr2L:18795994-18796114 1.0000 120 chr3R:6893208-6893328 1.0000 120 chr3R:30764220-30764340 1.0000 120 chr2L:5029492-5029612 1.0000 120 chr3R:6930585-6930705 1.0000 120 chr2L:15275943-15276063 1.0000 120 chr3L:21460487-21460607 1.0000 120 chr3R:30101015-30101135 1.0000 120 chr2L:18936221-18936341 1.0000 120 chr3R:8038021-8038141 1.0000 120 chr3R:29617271-29617391 1.0000 120 chr2R:14828762-14828882 1.0000 120 chr2L:12822737-12822857 1.0000 120 chr3L:1208397-1208517 1.0000 120 chr2R:25215354-25215474 1.0000 120 chr3L:21808051-21808171 1.0000 120 chr3L:19663861-19663981 1.0000 120 chr3R:6812159-6812279 1.0000 120 chr2L:3538619-3538739 1.0000 120 chr2R:12956179-12956299 1.0000 120 chr3R:28547272-28547392 1.0000 120 chr2R:24813681-24813801 1.0000 120 chr3L:1364662-1364782 1.0000 120 chr3R:23201170-23201290 1.0000 120 chr2L:3416520-3416640 1.0000 120 chrX:9729114-9729234 1.0000 120 chr2R:9979189-9979309 1.0000 120 chr2R:23225233-23225353 1.0000 120 chrX:18312510-18312630 1.0000 120 chr3R:10212924-10213044 1.0000 120 chr2R:19254148-19254268 1.0000 120 chr3L:16974690-16974810 1.0000 120 chr3R:6850042-6850162 1.0000 120 chr3L:6270390-6270510 1.0000 120 chr2R:22545603-22545723 1.0000 120 chr2R:19254349-19254469 1.0000 120 chr2L:2808139-2808259 1.0000 120 chrX:8806763-8806883 1.0000 120 chr3R:25740406-25740526 1.0000 120 chr3R:8190998-8191118 1.0000 120 chr3R:16948736-16948856 1.0000 120 chr3R:25094556-25094676 1.0000 120 chr2L:7175908-7176028 1.0000 120 chr3L:1688781-1688901 1.0000 120 chrX:18309471-18309591 1.0000 120 chr3R:15409249-15409369 1.0000 120 chrX:335064-335184 1.0000 120 chr2L:9981934-9982054 1.0000 120 chr3L:13028909-13029029 1.0000 120 chr2R:11528319-11528439 1.0000 120 chr3L:6371547-6371667 1.0000 120 chrX:4411534-4411654 1.0000 120 chr2R:9011991-9012111 1.0000 120 chrX:9284448-9284568 1.0000 120 chr3R:11353635-11353755 1.0000 120 chrX:17678161-17678281 1.0000 120 chr3L:19699758-19699878 1.0000 120 chr3L:12690820-12690940 1.0000 120 chr3L:4619926-4620046 1.0000 120 chr2L:12655987-12656107 1.0000 120 chr2R:22243832-22243952 1.0000 120 chr2L:11326585-11326705 1.0000 120 chrX:13541078-13541198 1.0000 120 chr2R:23632299-23632419 1.0000 120 chr2R:8030922-8031042 1.0000 120 chr2R:11048143-11048263 1.0000 120 chr3R:7310815-7310935 1.0000 120 chrX:21044577-21044697 1.0000 120 chr2L:16422780-16422900 1.0000 120 chr3R:12244609-12244729 1.0000 120 chr2R:12946278-12946398 1.0000 120 chr3R:16847337-16847457 1.0000 120 chr2L:6508859-6508979 1.0000 120 chr3L:7948015-7948135 1.0000 120 chrX:3437642-3437762 1.0000 120 chr3R:21931428-21931548 1.0000 120 chrX:5560739-5560859 1.0000 120 chr3R:13901603-13901723 1.0000 120 chr3L:3626285-3626405 1.0000 120 chrX:9693937-9694057 1.0000 120 chr3R:19255446-19255566 1.0000 120 chr2R:11469547-11469667 1.0000 120 chr2R:12904504-12904624 1.0000 120 chr3L:6269150-6269270 1.0000 120 chr3L:14177664-14177784 1.0000 120 chrX:739960-740080 1.0000 120 chr3L:18137329-18137449 1.0000 120 chrX:8624908-8625028 1.0000 120 chr3R:14389415-14389535 1.0000 120 chr2L:17750310-17750430 1.0000 120 chr3L:3624885-3625005 1.0000 120 chrX:14134028-14134148 1.0000 120 chr2L:1651233-1651353 1.0000 120 chr3R:13875151-13875271 1.0000 120 chrX:17768233-17768353 1.0000 120 chr2L:16881172-16881292 1.0000 120 chr3R:21434364-21434484 1.0000 120 chr2L:18881708-18881828 1.0000 120 chr3R:11937619-11937739 1.0000 120 chr3R:7313098-7313218 1.0000 120 chr3L:9004906-9005026 1.0000 120 chr3R:31311116-31311236 1.0000 120 chr2L:15459062-15459182 1.0000 120 chr3R:9157922-9158042 1.0000 120 chr3L:19674461-19674581 1.0000 120 chr2L:3662496-3662616 1.0000 120 chrX:14653783-14653903 1.0000 120 chr3R:21446577-21446697 1.0000 120 chr3R:10622343-10622463 1.0000 120 chr3L:2411058-2411178 1.0000 120 chr2R:8018899-8019019 1.0000 120 chr2L:11386543-11386663 1.0000 120 chr3L:14350263-14350383 1.0000 120 chr2L:19865898-19866018 1.0000 120 chrX:2140624-2140744 1.0000 120 chr3R:16811868-16811988 1.0000 120 chr3L:776402-776522 1.0000 120 chr2R:18312607-18312727 1.0000 120 chr3R:18787340-18787460 1.0000 120 chr3R:15993231-15993351 1.0000 120 chrX:17789790-17789910 1.0000 120 chr2R:11939510-11939630 1.0000 120 chr2L:3836616-3836736 1.0000 120 chr2R:5726942-5727062 1.0000 120 chr3L:388291-388411 1.0000 120 chr2R:25052515-25052635 1.0000 120 chr3L:2117129-2117249 1.0000 120 chrX:7537944-7538064 1.0000 120 chr2L:6536258-6536378 1.0000 120 chrX:16147687-16147807 1.0000 120 chr3L:3096166-3096286 1.0000 120 chr3R:31688831-31688951 1.0000 120 chr2L:1970545-1970665 1.0000 120 chr3L:166611-166731 1.0000 120 chr3L:24723875-24723995 1.0000 120 chr3R:4852503-4852623 1.0000 120 chrX:12000390-12000510 1.0000 120 chr3L:6904096-6904216 1.0000 120 chrX:4423946-4424066 1.0000 120 chrX:13568332-13568452 1.0000 120 chr3R:16882631-16882751 1.0000 120 chr2L:2454961-2455081 1.0000 120 chr3L:20635749-20635869 1.0000 120 chr3L:19190909-19191029 1.0000 120 chr2L:14236272-14236392 1.0000 120 chr3R:16403770-16403890 1.0000 120 chr3R:25094758-25094878 1.0000 120 chr3L:4545828-4545948 1.0000 120 chr2R:8307853-8307973 1.0000 120 chr3R:6913103-6913223 1.0000 120 chr2L:9581673-9581793 1.0000 120 chr3R:15631079-15631199 1.0000 120 chr3L:9019541-9019661 1.0000 120 chr3L:748543-748663 1.0000 120 chr3L:20552054-20552174 1.0000 120 chr3L:15258547-15258667 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Ez/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Ez.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.256 C 0.242 G 0.238 T 0.264 Background letter frequencies (from file dataset with add-one prior applied): A 0.256 C 0.242 G 0.238 T 0.264 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GAGMGAGA MEME-1 width = 8 sites = 68 llr = 577 E-value = 2.4e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1a13:819 pos.-specific C ::16:::1 probability G 9:8:a29: matrix T :::::::: bits 2.1 * 1.9 * * 1.7 * * ** 1.4 ** * ** Relative 1.2 *** **** Entropy 1.0 *** **** (12.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGCGAGA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:748543-748663 40 1.30e-05 GAAAATTATT GAGCGAGA GTTACTGTTC chrX:4423946-4424066 79 1.30e-05 gtgcgacaga gagcgaga gacagtaaag chr3R:16811868-16811988 26 1.30e-05 GCGCAGGTGC GAGCGAGA TGGCTGCTGG chr3R:21446577-21446697 92 1.30e-05 CGGCGAGTGC GAGCGAGA CGGGCGCTTC chr3R:7313098-7313218 65 1.30e-05 GAGTGCCGCA GAGCGAGA CAACAGGGCG chrX:9693937-9694057 80 1.30e-05 ATGGTGCcga gagcgaga gagagcgaga chr3L:7948015-7948135 70 1.30e-05 GGTTTCCAGA GAGCGAGA GAGAGAAGCA chr3R:12244609-12244729 65 1.30e-05 GCCACCGCTC GAGCGAGA TGGAAGATAA chr2R:8030922-8031042 60 1.30e-05 CCGTGTGCCA GAGCGAGA CGTACGTACG chr3R:16948736-16948856 27 1.30e-05 CGTCAAGTGA GAGCGAGA GGCAAGAGTA chr2R:23225233-23225353 8 1.30e-05 TTTTGGA GAGCGAGA ATTATCTTAA chrX:8805861-8805981 63 1.30e-05 GCCTGGGTGC GAGCGAGA TGCTAGCAGG chrX:5593995-5594115 75 1.30e-05 GCTGGCGCGT GAGCGAGA CGACTGCAGC chr3R:16899878-16899998 22 1.30e-05 GCACGAGCGC GAGCGAGA GAGGCCAAGA chr2R:19268994-19269114 87 1.30e-05 AAGAGCGAGG GAGCGAGA GCATCTGACT chr2R:24844910-24845030 82 1.30e-05 CGAAGGGAGA GAGCGAGA GAGGGCGTGC chr3R:25080564-25080684 53 1.30e-05 ACAAGCGGCT GAGCGAGA TGGAGCGATA chr3L:11927418-11927538 3 1.30e-05 GC GAGCGAGA GGCGAAATAC chr3L:21460288-21460408 24 1.30e-05 ATGGGAATGG GAGCGAGA ATCGCAGGGA chr2L:15111527-15111647 74 1.30e-05 GCCAGACGCC GAGCGAGA GGTAATCACA chr3R:6741896-6742016 84 1.30e-05 TTCGTAGCGA GAGCGAGA CAGAGGGCTT chr2R:12904504-12904624 25 2.68e-05 TTTCAGGCAT GAGAGAGA GCGAGCTCAA chr3R:6850042-6850162 25 2.68e-05 CAACGAGTGC GAGAGAGA GGACGGACAG chr3R:6848646-6848766 43 2.68e-05 AAAAGTGTGC GAGAGAGA CAACGGGCAT chrX:9692796-9692916 50 2.68e-05 CCATGCgaga gagagaga gcgaaggaga chr2R:12884454-12884574 74 2.68e-05 ACTGCCGTGC GAGAGAGA TGGCCCGATA chr2L:5421842-5421962 48 2.68e-05 gcaagacaga gagagaga gagagagcga chr2L:3836616-3836736 53 3.89e-05 AAATAAATCT GAGCGGGA AAGAGAGTGC chrX:17768233-17768353 50 3.89e-05 TACGCGGGTA GAGCGGGA TGGCTGATCG chr2R:11475508-11475628 54 3.89e-05 CCGTGTGCGC GAGCGGGA CAACAGTAGG chr2R:14790613-14790733 113 3.89e-05 GGGCTGGTGC GAGCGGGA chr3R:13877312-13877432 53 3.89e-05 CCGTTGGAGT GAGCGGGA TGGGTGTTGG chr2R:23046155-23046275 81 3.89e-05 ACAagcgagc gagcggga cgacgataga chr2R:8018899-8019019 95 6.57e-05 GCTGCAGTGC AAGCGAGA CAACCGTATG chr3L:9004906-9005026 112 6.57e-05 CTGGAAGTGG AAGCGAGA G chr3R:8190998-8191118 43 6.57e-05 GCGAGTCGTA GAGAGGGA TGGCATGCTA chr3R:16886535-16886655 67 6.57e-05 GTTTCTGTGG GAGAGGGA GGGAGGGGGA chrX:17397212-17397332 79 6.57e-05 AGAGCCGTGG AAGCGAGA GGCAGCGAAA chr4:704456-704576 29 6.57e-05 ACACGGGTGC GAGAGGGA CAACTGGTGT chr3R:6683287-6683407 39 6.57e-05 GATAAAGTTA AAGCGAGA CAACAGTCTG chr2R:22243832-22243952 38 7.98e-05 GGGAGGGCGA GAACGAGA CCGAAGACCG chr2L:7175908-7176028 113 7.98e-05 ctcaaatcga gaacgaga chr2L:1669704-1669824 72 7.98e-05 ATTCTGGGGG GAACGAGA TGGATGCACG chr3R:13843697-13843817 1 9.30e-05 . GACCGAGA AGTCGCCAGT chr2R:25052515-25052635 81 1.22e-04 CGAGCAGAGA AAGAGAGA GCCGGTAGTG chr2L:3662496-3662616 61 1.22e-04 GCGCATGCGC GAGCGAAA ATAACGGGAA chrX:8624908-8625028 1 1.22e-04 . AAGAGAGA CACACACAAG chr3R:28547272-28547392 75 1.22e-04 ACGCACAAGA GAGCGAAA CACCCAGGCA chr2R:11542137-11542257 83 1.22e-04 AGCTGCTAGA AAGAGAGA GCAGCAGACT chrX:9729114-9729234 13 1.37e-04 CAGGACTGTC GAAAGAGA CGGCACGAGG chr2R:25215354-25215474 6 1.37e-04 CGGGC GAAAGAGA GCGAAAGTGT chr2L:595116-595236 97 1.37e-04 GGCCCCCACA GAAAGAGA TAGCTGTCGA chr2R:9011991-9012111 23 1.49e-04 AGTCGTCGAG GAGCGAGC AAACGGAAAG chr2L:3538619-3538739 110 1.49e-04 AAAAGGGGGT GAGCGAGC GAG chr3L:14599658-14599778 20 1.62e-04 TAGAGCGCGC GAGGGAGA GAGTCGTATA chr2L:3540139-3540259 62 1.62e-04 TAGTGTGCCA GAGGGAGA GGGGCGATGC chr3L:432672-432792 105 1.76e-04 TTGTGTGTTA GACAGAGA AATCCACG chr2L:377794-377914 16 1.76e-04 CATGCGGAGC GACAGAGA GCGGTAGAGA chr3R:16920546-16920666 90 1.76e-04 GGCGAAAGCG GACAGAGA AAAGTGGTGG chr2R:9194952-9195072 113 1.76e-04 GCGCGCGCCA GACAGAGA chrX:14134028-14134148 8 1.91e-04 CTGCACT GAGAGAAA TAGTGGGGAA chr2R:16386502-16386622 69 2.04e-04 TGCGGATGTT AAGCGGGA AAGTGGGAAA chr3L:14177664-14177784 27 2.30e-04 TCTTACCTGG GAGAGAGC TGCGCCGTCG chr2L:3835303-3835423 58 2.30e-04 TTCTCCAACT GAGAGAGC GCATGTCTCC chr3L:1688781-1688901 81 2.69e-04 GCGCCTTGTC GAGCGGAA GTGTCCGAGA chr3R:6812159-6812279 54 2.69e-04 CTGGTTCAAT GAGCGGAA TTAGTCCTTT chr2L:18936221-18936341 56 2.98e-04 TCCGGCGTGC GAAAGGGA TGGCAGTAGT chr3R:21417046-21417166 34 2.98e-04 AAGGCAGATT AAACGAGA TGGCGCTCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:748543-748663 1.3e-05 39_[+1]_73 chrX:4423946-4424066 1.3e-05 78_[+1]_34 chr3R:16811868-16811988 1.3e-05 25_[+1]_87 chr3R:21446577-21446697 1.3e-05 91_[+1]_21 chr3R:7313098-7313218 1.3e-05 64_[+1]_48 chrX:9693937-9694057 1.3e-05 79_[+1]_33 chr3L:7948015-7948135 1.3e-05 69_[+1]_43 chr3R:12244609-12244729 1.3e-05 64_[+1]_48 chr2R:8030922-8031042 1.3e-05 59_[+1]_53 chr3R:16948736-16948856 1.3e-05 26_[+1]_86 chr2R:23225233-23225353 1.3e-05 7_[+1]_105 chrX:8805861-8805981 1.3e-05 62_[+1]_50 chrX:5593995-5594115 1.3e-05 74_[+1]_38 chr3R:16899878-16899998 1.3e-05 21_[+1]_91 chr2R:19268994-19269114 1.3e-05 86_[+1]_26 chr2R:24844910-24845030 1.3e-05 81_[+1]_31 chr3R:25080564-25080684 1.3e-05 52_[+1]_60 chr3L:11927418-11927538 1.3e-05 2_[+1]_110 chr3L:21460288-21460408 1.3e-05 23_[+1]_89 chr2L:15111527-15111647 1.3e-05 73_[+1]_39 chr3R:6741896-6742016 1.3e-05 83_[+1]_29 chr2R:12904504-12904624 2.7e-05 24_[+1]_88 chr3R:6850042-6850162 2.7e-05 24_[+1]_88 chr3R:6848646-6848766 2.7e-05 42_[+1]_70 chrX:9692796-9692916 2.7e-05 49_[+1]_63 chr2R:12884454-12884574 2.7e-05 73_[+1]_39 chr2L:5421842-5421962 2.7e-05 47_[+1]_65 chr2L:3836616-3836736 3.9e-05 52_[+1]_60 chrX:17768233-17768353 3.9e-05 49_[+1]_63 chr2R:11475508-11475628 3.9e-05 53_[+1]_59 chr2R:14790613-14790733 3.9e-05 112_[+1] chr3R:13877312-13877432 3.9e-05 52_[+1]_60 chr2R:23046155-23046275 3.9e-05 80_[+1]_32 chr2R:8018899-8019019 6.6e-05 94_[+1]_18 chr3L:9004906-9005026 6.6e-05 111_[+1]_1 chr3R:8190998-8191118 6.6e-05 42_[+1]_70 chr3R:16886535-16886655 6.6e-05 66_[+1]_46 chrX:17397212-17397332 6.6e-05 78_[+1]_34 chr4:704456-704576 6.6e-05 28_[+1]_84 chr3R:6683287-6683407 6.6e-05 38_[+1]_74 chr2R:22243832-22243952 8e-05 37_[+1]_75 chr2L:7175908-7176028 8e-05 112_[+1] chr2L:1669704-1669824 8e-05 71_[+1]_41 chr3R:13843697-13843817 9.3e-05 [+1]_112 chr2R:25052515-25052635 0.00012 80_[+1]_32 chr2L:3662496-3662616 0.00012 60_[+1]_52 chrX:8624908-8625028 0.00012 [+1]_112 chr3R:28547272-28547392 0.00012 74_[+1]_38 chr2R:11542137-11542257 0.00012 82_[+1]_30 chrX:9729114-9729234 0.00014 12_[+1]_100 chr2R:25215354-25215474 0.00014 5_[+1]_107 chr2L:595116-595236 0.00014 96_[+1]_16 chr2R:9011991-9012111 0.00015 22_[+1]_90 chr2L:3538619-3538739 0.00015 109_[+1]_3 chr3L:14599658-14599778 0.00016 19_[+1]_93 chr2L:3540139-3540259 0.00016 61_[+1]_51 chr3L:432672-432792 0.00018 104_[+1]_8 chr2L:377794-377914 0.00018 15_[+1]_97 chr3R:16920546-16920666 0.00018 89_[+1]_23 chr2R:9194952-9195072 0.00018 112_[+1] chrX:14134028-14134148 0.00019 7_[+1]_105 chr2R:16386502-16386622 0.0002 68_[+1]_44 chr3L:14177664-14177784 0.00023 26_[+1]_86 chr2L:3835303-3835423 0.00023 57_[+1]_55 chr3L:1688781-1688901 0.00027 80_[+1]_32 chr3R:6812159-6812279 0.00027 53_[+1]_59 chr2L:18936221-18936341 0.0003 55_[+1]_57 chr3R:21417046-21417166 0.0003 33_[+1]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGMGAGA width=8 seqs=68 chr3L:748543-748663 ( 40) GAGCGAGA 1 chrX:4423946-4424066 ( 79) GAGCGAGA 1 chr3R:16811868-16811988 ( 26) GAGCGAGA 1 chr3R:21446577-21446697 ( 92) GAGCGAGA 1 chr3R:7313098-7313218 ( 65) GAGCGAGA 1 chrX:9693937-9694057 ( 80) GAGCGAGA 1 chr3L:7948015-7948135 ( 70) GAGCGAGA 1 chr3R:12244609-12244729 ( 65) GAGCGAGA 1 chr2R:8030922-8031042 ( 60) GAGCGAGA 1 chr3R:16948736-16948856 ( 27) GAGCGAGA 1 chr2R:23225233-23225353 ( 8) GAGCGAGA 1 chrX:8805861-8805981 ( 63) GAGCGAGA 1 chrX:5593995-5594115 ( 75) GAGCGAGA 1 chr3R:16899878-16899998 ( 22) GAGCGAGA 1 chr2R:19268994-19269114 ( 87) GAGCGAGA 1 chr2R:24844910-24845030 ( 82) GAGCGAGA 1 chr3R:25080564-25080684 ( 53) GAGCGAGA 1 chr3L:11927418-11927538 ( 3) GAGCGAGA 1 chr3L:21460288-21460408 ( 24) GAGCGAGA 1 chr2L:15111527-15111647 ( 74) GAGCGAGA 1 chr3R:6741896-6742016 ( 84) GAGCGAGA 1 chr2R:12904504-12904624 ( 25) GAGAGAGA 1 chr3R:6850042-6850162 ( 25) GAGAGAGA 1 chr3R:6848646-6848766 ( 43) GAGAGAGA 1 chrX:9692796-9692916 ( 50) GAGAGAGA 1 chr2R:12884454-12884574 ( 74) GAGAGAGA 1 chr2L:5421842-5421962 ( 48) GAGAGAGA 1 chr2L:3836616-3836736 ( 53) GAGCGGGA 1 chrX:17768233-17768353 ( 50) GAGCGGGA 1 chr2R:11475508-11475628 ( 54) GAGCGGGA 1 chr2R:14790613-14790733 ( 113) GAGCGGGA 1 chr3R:13877312-13877432 ( 53) GAGCGGGA 1 chr2R:23046155-23046275 ( 81) GAGCGGGA 1 chr2R:8018899-8019019 ( 95) AAGCGAGA 1 chr3L:9004906-9005026 ( 112) AAGCGAGA 1 chr3R:8190998-8191118 ( 43) GAGAGGGA 1 chr3R:16886535-16886655 ( 67) GAGAGGGA 1 chrX:17397212-17397332 ( 79) AAGCGAGA 1 chr4:704456-704576 ( 29) GAGAGGGA 1 chr3R:6683287-6683407 ( 39) AAGCGAGA 1 chr2R:22243832-22243952 ( 38) GAACGAGA 1 chr2L:7175908-7176028 ( 113) GAACGAGA 1 chr2L:1669704-1669824 ( 72) GAACGAGA 1 chr3R:13843697-13843817 ( 1) GACCGAGA 1 chr2R:25052515-25052635 ( 81) AAGAGAGA 1 chr2L:3662496-3662616 ( 61) GAGCGAAA 1 chrX:8624908-8625028 ( 1) AAGAGAGA 1 chr3R:28547272-28547392 ( 75) GAGCGAAA 1 chr2R:11542137-11542257 ( 83) AAGAGAGA 1 chrX:9729114-9729234 ( 13) GAAAGAGA 1 chr2R:25215354-25215474 ( 6) GAAAGAGA 1 chr2L:595116-595236 ( 97) GAAAGAGA 1 chr2R:9011991-9012111 ( 23) GAGCGAGC 1 chr2L:3538619-3538739 ( 110) GAGCGAGC 1 chr3L:14599658-14599778 ( 20) GAGGGAGA 1 chr2L:3540139-3540259 ( 62) GAGGGAGA 1 chr3L:432672-432792 ( 105) GACAGAGA 1 chr2L:377794-377914 ( 16) GACAGAGA 1 chr3R:16920546-16920666 ( 90) GACAGAGA 1 chr2R:9194952-9195072 ( 113) GACAGAGA 1 chrX:14134028-14134148 ( 8) GAGAGAAA 1 chr2R:16386502-16386622 ( 69) AAGCGGGA 1 chr3L:14177664-14177784 ( 27) GAGAGAGC 1 chr2L:3835303-3835423 ( 58) GAGAGAGC 1 chr3L:1688781-1688901 ( 81) GAGCGGAA 1 chr3R:6812159-6812279 ( 54) GAGCGGAA 1 chr2L:18936221-18936341 ( 56) GAAAGGGA 1 chr3R:21417046-21417166 ( 34) AAACGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.463 E= 2.4e-030 -95 -1273 187 -1273 197 -1273 -1273 -1273 -112 -172 176 -1273 40 139 -302 -1273 -1273 -1273 207 -1273 166 -1273 -32 -1273 -180 -1273 196 -1273 188 -204 -1273 -1273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 2.4e-030 0.132353 0.000000 0.867647 0.000000 1.000000 0.000000 0.000000 0.000000 0.117647 0.073529 0.808824 0.000000 0.338235 0.632353 0.029412 0.000000 0.000000 0.000000 1.000000 0.000000 0.808824 0.000000 0.191176 0.000000 0.073529 0.000000 0.926471 0.000000 0.941176 0.058824 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGAGA MEME-1 regular expression -------------------------------------------------------------------------------- GAG[CA]GAGA -------------------------------------------------------------------------------- Time 7.52 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCKCTC MEME-2 width = 8 sites = 54 llr = 481 E-value = 5.7e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C :a2a:8:a probability G ::::6::: matrix T a:8:42a: bits 2.1 * * 1.9 ** * ** 1.7 ** * ** 1.4 ** * ** Relative 1.2 **** *** Entropy 1.0 **** *** (12.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCGCTC consensus C TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:25094758-25094878 69 1.50e-05 AACATTGCCT TCTCGCTC GGCATAGTGA chr3L:6904096-6904216 112 1.50e-05 TATAGCCCCG TCTCGCTC C chr2L:6536258-6536378 54 1.50e-05 GAGCAGCCTC TCTCGCTC CCTCCGCCGG chr3R:10622343-10622463 12 1.50e-05 GCCCCTGTTG TCTCGCTC TCGCCCGTGG chr3R:13875151-13875271 14 1.50e-05 ACTGCTGGCG TCTCGCTC GCACACGTGG chr3L:3624885-3625005 90 1.50e-05 CGCAAAAGTG TCTCGCTC TCTCTTTCTA chrX:8624908-8625028 48 1.50e-05 CCTGTTTTCG TCTCGCTC GCACTGCAAT chr2R:11469547-11469667 99 1.50e-05 TGTCTACCCG TCTCGCTC ACTCGGTCGA chr3R:16847337-16847457 5 1.50e-05 GCCG TCTCGCTC CCACCAAAAT chr2L:16422780-16422900 72 1.50e-05 actctctctc tctcgctc cctcgctagc chr3R:8190998-8191118 77 1.50e-05 ACTGTGTTGG TCTCGCTC TAGCGACAGC chrX:9729114-9729234 54 1.50e-05 GTGCGTGCCA TCTCGCTC GCACAGCGGC chr2L:3538619-3538739 64 1.50e-05 ATATTTGGCC TCTCGCTC GCTCGCAAAA chr3R:6930585-6930705 92 1.50e-05 GTCATCACCC TCTCGCTC TTTCTCTTTC chr3R:6848646-6848766 76 1.50e-05 CGCTCCGCCA TCTCGCTC GCTCTCAGGC chrX:8757932-8758052 37 1.50e-05 tctctctcgc tctcgctc tcgctctcTG chr2R:25061738-25061858 87 1.50e-05 GATCGCAGCC TCTCGCTC TTGCATCGCC chr3R:6678635-6678755 71 1.50e-05 GCGACTGCCG TCTCGCTC GCTCCCTGGG chr2L:594916-595036 37 1.50e-05 tatctctttc tctcgctc tAGCTGGTGG chr2L:12085889-12086009 105 1.50e-05 TTAGCAACCG TCTCGCTC GCCGCCAG chr3R:21434364-21434484 112 3.17e-05 tccctctctc tctctctc t chr2L:12655987-12656107 34 3.17e-05 CTCCGCACTT TCTCTCTC TTGCGTTCTC chr3L:12690820-12690940 97 3.17e-05 gcgcactctt tctctctc tttcccgctc chr3R:30764220-30764340 78 3.17e-05 GGCGGctatc tctctctc cctctctctc chr2L:18795994-18796114 100 3.17e-05 tctgtcatta tctctctc tctGCTTGGG chr3R:16830134-16830254 101 3.17e-05 GCCGCTGTtc tctctctc tttcccgctc chr2L:1970545-1970665 27 4.81e-05 CGTCGCGCTC TCTCGTTC TCGCCCAACT chrX:4411534-4411654 51 4.81e-05 GCACTTGCCT TCTCGTTC TTGCGCACAT chr3R:6913103-6913223 30 6.18e-05 CACTTTCCCA TCCCGCTC ATCCACTCCC chr2R:5726942-5727062 97 6.18e-05 AGTAGCTCGT TCCCGCTC TAGAGCACAG chrX:18309471-18309591 100 6.18e-05 TCGCGCGCCA TCCCGCTC GCTCCTGCGG chr2R:9979189-9979309 22 6.18e-05 GCTCAGGCTG TCCCGCTC GCACCTGCCT chr3L:9041133-9041253 27 6.18e-05 AGTTCGCTTT TCCCGCTC CTCCGCTGCT chr3L:9019336-9019456 49 6.18e-05 GAGCTAGCCG TCCCGCTC TGGTTTGGCA chr2R:12884454-12884574 40 6.18e-05 ACACTAGTTG TCCCGCTC CCACCGCGGT chr3L:14177664-14177784 74 8.00e-05 TAGCGTCTTC TCTCTTTC GTTTTGCGGC chr2L:3825481-3825601 103 8.00e-05 TAGCTACCCG TCTCTTTC GGCCTGTGGG chr2R:14790613-14790733 5 8.00e-05 GCCA TCTCTTTC GACCGCAGAA chrX:4462063-4462183 109 8.00e-05 AATCGCTCGC TCTCTTTC TGGC chr2L:1972854-1972974 70 8.00e-05 TGTCGCTGCA TCTCTTTC GCTCCCGCTG chr3L:14599658-14599778 67 8.00e-05 TATCGATGTG TCTCTTTC TCGCCCACAA chr3R:16899878-16899998 46 8.00e-05 AAGAGCACGC TCTCTTTC ACATCCATGA chr2L:3540139-3540259 18 8.00e-05 TGTATCGGCC TCTCTTTC TGCCCGGGCC chr3L:14133113-14133233 76 8.00e-05 TATGTCCCCT TCTCTTTC GCTCTGTCTG chr2R:11528319-11528439 23 9.53e-05 GCGCAAGCTC TCCCTCTC TCACGGGGCG chr3R:4835425-4835545 113 9.53e-05 GCTGTCTCAC TCCCTCTC chr3L:14579056-14579176 38 9.53e-05 Gctgtccctt tccctctc ggtcttcctt chr3L:19682997-19683117 105 1.11e-04 ACTACGGTTG TCTCACTC GAACAGTC chr2R:12955980-12956100 21 1.11e-04 ACTCGCTTGC TCTCACTC GCGCTCGCCC chrX:8806763-8806883 55 1.43e-04 CCGCGTTTTG TCCCTTTC GCACTTGGCG chrX:16147687-16147807 20 1.59e-04 GTTGTTGCTA TCTCGCTT GCTCACGCCC chr2L:18936221-18936341 91 1.59e-04 ACCATGGCCA TCTCGCTT CCACTCTCAC chr2L:1669704-1669824 103 1.77e-04 GCTGCATTCT TCTCATTC GTTCGCTCGT chr2L:20783252-20783372 61 2.05e-04 TCTACGGTTG GCTCGCTC GCACTCACGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:25094758-25094878 1.5e-05 68_[+2]_44 chr3L:6904096-6904216 1.5e-05 111_[+2]_1 chr2L:6536258-6536378 1.5e-05 53_[+2]_59 chr3R:10622343-10622463 1.5e-05 11_[+2]_101 chr3R:13875151-13875271 1.5e-05 13_[+2]_99 chr3L:3624885-3625005 1.5e-05 89_[+2]_23 chrX:8624908-8625028 1.5e-05 47_[+2]_65 chr2R:11469547-11469667 1.5e-05 98_[+2]_14 chr3R:16847337-16847457 1.5e-05 4_[+2]_108 chr2L:16422780-16422900 1.5e-05 71_[+2]_41 chr3R:8190998-8191118 1.5e-05 76_[+2]_36 chrX:9729114-9729234 1.5e-05 53_[+2]_59 chr2L:3538619-3538739 1.5e-05 63_[+2]_49 chr3R:6930585-6930705 1.5e-05 91_[+2]_21 chr3R:6848646-6848766 1.5e-05 75_[+2]_37 chrX:8757932-8758052 1.5e-05 36_[+2]_76 chr2R:25061738-25061858 1.5e-05 86_[+2]_26 chr3R:6678635-6678755 1.5e-05 70_[+2]_42 chr2L:594916-595036 1.5e-05 36_[+2]_76 chr2L:12085889-12086009 1.5e-05 104_[+2]_8 chr3R:21434364-21434484 3.2e-05 111_[+2]_1 chr2L:12655987-12656107 3.2e-05 33_[+2]_79 chr3L:12690820-12690940 3.2e-05 96_[+2]_16 chr3R:30764220-30764340 3.2e-05 77_[+2]_35 chr2L:18795994-18796114 3.2e-05 99_[+2]_13 chr3R:16830134-16830254 3.2e-05 100_[+2]_12 chr2L:1970545-1970665 4.8e-05 26_[+2]_86 chrX:4411534-4411654 4.8e-05 50_[+2]_62 chr3R:6913103-6913223 6.2e-05 29_[+2]_83 chr2R:5726942-5727062 6.2e-05 96_[+2]_16 chrX:18309471-18309591 6.2e-05 99_[+2]_13 chr2R:9979189-9979309 6.2e-05 21_[+2]_91 chr3L:9041133-9041253 6.2e-05 26_[+2]_86 chr3L:9019336-9019456 6.2e-05 48_[+2]_64 chr2R:12884454-12884574 6.2e-05 39_[+2]_73 chr3L:14177664-14177784 8e-05 73_[+2]_39 chr2L:3825481-3825601 8e-05 102_[+2]_10 chr2R:14790613-14790733 8e-05 4_[+2]_108 chrX:4462063-4462183 8e-05 108_[+2]_4 chr2L:1972854-1972974 8e-05 69_[+2]_43 chr3L:14599658-14599778 8e-05 66_[+2]_46 chr3R:16899878-16899998 8e-05 45_[+2]_67 chr2L:3540139-3540259 8e-05 17_[+2]_95 chr3L:14133113-14133233 8e-05 75_[+2]_37 chr2R:11528319-11528439 9.5e-05 22_[+2]_90 chr3R:4835425-4835545 9.5e-05 112_[+2] chr3L:14579056-14579176 9.5e-05 37_[+2]_75 chr3L:19682997-19683117 0.00011 104_[+2]_8 chr2R:12955980-12956100 0.00011 20_[+2]_92 chrX:8806763-8806883 0.00014 54_[+2]_58 chrX:16147687-16147807 0.00016 19_[+2]_93 chr2L:18936221-18936341 0.00016 90_[+2]_22 chr2L:1669704-1669824 0.00018 102_[+2]_10 chr2L:20783252-20783372 0.00021 60_[+2]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCKCTC width=8 seqs=54 chr3R:25094758-25094878 ( 69) TCTCGCTC 1 chr3L:6904096-6904216 ( 112) TCTCGCTC 1 chr2L:6536258-6536378 ( 54) TCTCGCTC 1 chr3R:10622343-10622463 ( 12) TCTCGCTC 1 chr3R:13875151-13875271 ( 14) TCTCGCTC 1 chr3L:3624885-3625005 ( 90) TCTCGCTC 1 chrX:8624908-8625028 ( 48) TCTCGCTC 1 chr2R:11469547-11469667 ( 99) TCTCGCTC 1 chr3R:16847337-16847457 ( 5) TCTCGCTC 1 chr2L:16422780-16422900 ( 72) TCTCGCTC 1 chr3R:8190998-8191118 ( 77) TCTCGCTC 1 chrX:9729114-9729234 ( 54) TCTCGCTC 1 chr2L:3538619-3538739 ( 64) TCTCGCTC 1 chr3R:6930585-6930705 ( 92) TCTCGCTC 1 chr3R:6848646-6848766 ( 76) TCTCGCTC 1 chrX:8757932-8758052 ( 37) TCTCGCTC 1 chr2R:25061738-25061858 ( 87) TCTCGCTC 1 chr3R:6678635-6678755 ( 71) TCTCGCTC 1 chr2L:594916-595036 ( 37) TCTCGCTC 1 chr2L:12085889-12086009 ( 105) TCTCGCTC 1 chr3R:21434364-21434484 ( 112) TCTCTCTC 1 chr2L:12655987-12656107 ( 34) TCTCTCTC 1 chr3L:12690820-12690940 ( 97) TCTCTCTC 1 chr3R:30764220-30764340 ( 78) TCTCTCTC 1 chr2L:18795994-18796114 ( 100) TCTCTCTC 1 chr3R:16830134-16830254 ( 101) TCTCTCTC 1 chr2L:1970545-1970665 ( 27) TCTCGTTC 1 chrX:4411534-4411654 ( 51) TCTCGTTC 1 chr3R:6913103-6913223 ( 30) TCCCGCTC 1 chr2R:5726942-5727062 ( 97) TCCCGCTC 1 chrX:18309471-18309591 ( 100) TCCCGCTC 1 chr2R:9979189-9979309 ( 22) TCCCGCTC 1 chr3L:9041133-9041253 ( 27) TCCCGCTC 1 chr3L:9019336-9019456 ( 49) TCCCGCTC 1 chr2R:12884454-12884574 ( 40) TCCCGCTC 1 chr3L:14177664-14177784 ( 74) TCTCTTTC 1 chr2L:3825481-3825601 ( 103) TCTCTTTC 1 chr2R:14790613-14790733 ( 5) TCTCTTTC 1 chrX:4462063-4462183 ( 109) TCTCTTTC 1 chr2L:1972854-1972974 ( 70) TCTCTTTC 1 chr3L:14599658-14599778 ( 67) TCTCTTTC 1 chr3R:16899878-16899998 ( 46) TCTCTTTC 1 chr2L:3540139-3540259 ( 18) TCTCTTTC 1 chr3L:14133113-14133233 ( 76) TCTCTTTC 1 chr2R:11528319-11528439 ( 23) TCCCTCTC 1 chr3R:4835425-4835545 ( 113) TCCCTCTC 1 chr3L:14579056-14579176 ( 38) TCCCTCTC 1 chr3L:19682997-19683117 ( 105) TCTCACTC 1 chr2R:12955980-12956100 ( 21) TCTCACTC 1 chrX:8806763-8806883 ( 55) TCCCTTTC 1 chrX:16147687-16147807 ( 20) TCTCGCTT 1 chr2L:18936221-18936341 ( 91) TCTCGCTT 1 chr2L:1669704-1669824 ( 103) TCTCATTC 1 chr2L:20783252-20783372 ( 61) GCTCGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6807 E= 5.7e-025 -1240 -1240 -368 189 -1240 205 -1240 -1240 -1240 -25 -1240 159 -1240 205 -1240 -1240 -220 -1240 132 41 -1240 165 -1240 -14 -1240 -1240 -1240 192 -1240 199 -1240 -283 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 5.7e-025 0.000000 0.000000 0.018519 0.981481 0.000000 1.000000 0.000000 0.000000 0.000000 0.203704 0.000000 0.796296 0.000000 1.000000 0.000000 0.000000 0.055556 0.000000 0.592593 0.351852 0.000000 0.759259 0.000000 0.240741 0.000000 0.000000 0.000000 1.000000 0.000000 0.962963 0.000000 0.037037 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCKCTC MEME-2 regular expression -------------------------------------------------------------------------------- TC[TC]C[GT][CT]TC -------------------------------------------------------------------------------- Time 13.79 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAATGGY MEME-3 width = 8 sites = 35 llr = 305 E-value = 4.1e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAATGGY MEME-3 Description -------------------------------------------------------------------------------- Simplified A aa9a::1: pos.-specific C :::::::4 probability G :::::a62 matrix T ::1:a:24 bits 2.1 * 1.9 ** *** 1.7 ** *** 1.4 ****** Relative 1.2 ****** Entropy 1.0 ****** (12.6 bits) 0.8 ****** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAATGGT consensus TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATGGY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17768233-17768353 11 3.25e-05 CTCTCGCGGC AAAATGGC CACTCATGGC chr3R:16847337-16847457 18 3.25e-05 CGCTCCCACC AAAATGGC CGCACTAGCC chrX:4411534-4411654 79 3.25e-05 GAAACTGTGT AAAATGGT CGCCTTGCAG chr2R:11528319-11528439 97 3.25e-05 GTAGGCCAGG AAAATGGC TGCCTTTCCA chr3R:25094556-25094676 20 3.25e-05 ACGAAAATTG AAAATGGC GATGGGAAAA chr3R:8190998-8191118 27 3.25e-05 GCCCAAATCA AAAATGGC GAGTCGTAGA chr3L:19663861-19663981 57 3.25e-05 TTATTATCCC AAAATGGT TGCGTTTGTC chr2R:13042463-13042583 66 3.25e-05 GGAAGTCCGG AAAATGGT CAGGTAATTG chr3R:16920546-16920666 72 3.25e-05 AGTACCAGCG AAAATGGT GGCGAAAGCG chr3L:9041133-9041253 48 3.25e-05 CGCTGCTCAC AAAATGGC GCCCACCGTC chr2L:15111527-15111647 91 3.25e-05 AGGTAATCAC AAAATGGC CACTTTGGGA chr3R:29526795-29526915 57 3.25e-05 ACTGGGCAGA AAAATGGT GGCCAACGCT chr2L:507341-507461 35 3.25e-05 GAGCGAATTC AAAATGGT TGCAGACAGC chr2R:19268789-19268909 31 3.25e-05 TTTTTGCGCA AAAATGGC GATACGCGAT chr3R:16038138-16038258 98 3.25e-05 AACCAAATCC AAAATGGC TGCCAAGCAA chr3L:166611-166731 86 4.78e-05 ATGTCCACAG AAAATGGG ATTGTTTTCT chrX:2140624-2140744 37 4.78e-05 AAGCGAATAA AAAATGGG CGCACCACCG chr2L:7175908-7176028 14 4.78e-05 GAGGTCTACA AAAATggg agaaatacaa chrX:14134028-14134148 33 8.38e-05 GAACTGTTCA AAAATGTT GAGTTATTCC chr3R:21931428-21931548 13 8.38e-05 AAACATAGGC AAAATGTT GTAAGGCTTT chrX:17678161-17678281 54 8.38e-05 TTTATTTAGG AAAATGTT ACTATCAGCC chrX:8806763-8806883 95 8.38e-05 GTGCCAAGGT AAAATGTC AAATGCTTTT chr3L:6270390-6270510 92 8.38e-05 ATTACTATCC AAAATGTC TTCTAACAAG chr3R:18787340-18787460 49 1.19e-04 ATTTTATCAT AAAATGAT ATACCTTGCT chrX:13541078-13541198 12 1.19e-04 TAAAAAATTA AAAATGAT TCATATTTAA chr3L:19699758-19699878 87 1.19e-04 TTATGAGCGC AAAATGAT GTAGAGTTGA chr3R:13843697-13843817 112 1.19e-04 GAACAGGAAT AAAATGAT A chr3R:31062156-31062276 31 1.19e-04 CAATCACTCG AAAATGAT AACAAAAAAA chr3L:16974690-16974810 68 1.36e-04 CATGACCTAA AAAATGTG TGCTATAATA chr3R:30101015-30101135 21 1.36e-04 ACACAATAAG AAAATGTG TTTGATGCGA chr2L:1644376-1644496 90 1.36e-04 TGTTGTTGCG AAAATGTG CAAAAACTTG chrX:7537944-7538064 111 1.69e-04 ataattattt aatatggt cg chr2R:25052515-25052635 43 1.69e-04 GACCAGGCAC AATATGGC ACCGATCAAA chr2R:19254148-19254268 68 1.69e-04 CTTCTTTATA AATATGGC TGCGTTGGCC chr2L:3540139-3540259 84 1.69e-04 CGATGCGTCT AATATGGC ATGCGTGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATGGY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17768233-17768353 3.2e-05 10_[+3]_102 chr3R:16847337-16847457 3.2e-05 17_[+3]_95 chrX:4411534-4411654 3.2e-05 78_[+3]_34 chr2R:11528319-11528439 3.2e-05 96_[+3]_16 chr3R:25094556-25094676 3.2e-05 19_[+3]_93 chr3R:8190998-8191118 3.2e-05 26_[+3]_86 chr3L:19663861-19663981 3.2e-05 56_[+3]_56 chr2R:13042463-13042583 3.2e-05 65_[+3]_47 chr3R:16920546-16920666 3.2e-05 71_[+3]_41 chr3L:9041133-9041253 3.2e-05 47_[+3]_65 chr2L:15111527-15111647 3.2e-05 90_[+3]_22 chr3R:29526795-29526915 3.2e-05 56_[+3]_56 chr2L:507341-507461 3.2e-05 34_[+3]_78 chr2R:19268789-19268909 3.2e-05 30_[+3]_82 chr3R:16038138-16038258 3.2e-05 97_[+3]_15 chr3L:166611-166731 4.8e-05 85_[+3]_27 chrX:2140624-2140744 4.8e-05 36_[+3]_76 chr2L:7175908-7176028 4.8e-05 13_[+3]_99 chrX:14134028-14134148 8.4e-05 32_[+3]_80 chr3R:21931428-21931548 8.4e-05 12_[+3]_100 chrX:17678161-17678281 8.4e-05 53_[+3]_59 chrX:8806763-8806883 8.4e-05 94_[+3]_18 chr3L:6270390-6270510 8.4e-05 91_[+3]_21 chr3R:18787340-18787460 0.00012 48_[+3]_64 chrX:13541078-13541198 0.00012 11_[+3]_101 chr3L:19699758-19699878 0.00012 86_[+3]_26 chr3R:13843697-13843817 0.00012 111_[+3]_1 chr3R:31062156-31062276 0.00012 30_[+3]_82 chr3L:16974690-16974810 0.00014 67_[+3]_45 chr3R:30101015-30101135 0.00014 20_[+3]_92 chr2L:1644376-1644496 0.00014 89_[+3]_23 chrX:7537944-7538064 0.00017 110_[+3]_2 chr2R:25052515-25052635 0.00017 42_[+3]_70 chr2R:19254148-19254268 0.00017 67_[+3]_45 chr2L:3540139-3540259 0.00017 83_[+3]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATGGY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAATGGY width=8 seqs=35 chrX:17768233-17768353 ( 11) AAAATGGC 1 chr3R:16847337-16847457 ( 18) AAAATGGC 1 chrX:4411534-4411654 ( 79) AAAATGGT 1 chr2R:11528319-11528439 ( 97) AAAATGGC 1 chr3R:25094556-25094676 ( 20) AAAATGGC 1 chr3R:8190998-8191118 ( 27) AAAATGGC 1 chr3L:19663861-19663981 ( 57) AAAATGGT 1 chr2R:13042463-13042583 ( 66) AAAATGGT 1 chr3R:16920546-16920666 ( 72) AAAATGGT 1 chr3L:9041133-9041253 ( 48) AAAATGGC 1 chr2L:15111527-15111647 ( 91) AAAATGGC 1 chr3R:29526795-29526915 ( 57) AAAATGGT 1 chr2L:507341-507461 ( 35) AAAATGGT 1 chr2R:19268789-19268909 ( 31) AAAATGGC 1 chr3R:16038138-16038258 ( 98) AAAATGGC 1 chr3L:166611-166731 ( 86) AAAATGGG 1 chrX:2140624-2140744 ( 37) AAAATGGG 1 chr2L:7175908-7176028 ( 14) AAAATGGG 1 chrX:14134028-14134148 ( 33) AAAATGTT 1 chr3R:21931428-21931548 ( 13) AAAATGTT 1 chrX:17678161-17678281 ( 54) AAAATGTT 1 chrX:8806763-8806883 ( 95) AAAATGTC 1 chr3L:6270390-6270510 ( 92) AAAATGTC 1 chr3R:18787340-18787460 ( 49) AAAATGAT 1 chrX:13541078-13541198 ( 12) AAAATGAT 1 chr3L:19699758-19699878 ( 87) AAAATGAT 1 chr3R:13843697-13843817 ( 112) AAAATGAT 1 chr3R:31062156-31062276 ( 31) AAAATGAT 1 chr3L:16974690-16974810 ( 68) AAAATGTG 1 chr3R:30101015-30101135 ( 21) AAAATGTG 1 chr2L:1644376-1644496 ( 90) AAAATGTG 1 chrX:7537944-7538064 ( 111) AATATGGT 1 chr2R:25052515-25052635 ( 43) AATATGGC 1 chr2R:19254148-19254268 ( 68) AATATGGC 1 chr2L:3540139-3540259 ( 84) AATATGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATGGY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0411 E= 4.1e-002 197 -1177 -1177 -1177 197 -1177 -1177 -1177 179 -1177 -1177 -121 197 -1177 -1177 -1177 -1177 -1177 -1177 192 -1177 -1177 207 -1177 -84 -1177 140 -21 -1177 73 -47 70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATGGY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 4.1e-002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.885714 0.000000 0.000000 0.114286 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.142857 0.000000 0.628571 0.228571 0.000000 0.400000 0.171429 0.428571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATGGY MEME-3 regular expression -------------------------------------------------------------------------------- AAAATG[GT][TC] -------------------------------------------------------------------------------- Time 19.89 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACA MEME-4 width = 8 sites = 24 llr = 221 E-value = 4.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :8:a:a:9 pos.-specific C 9:a:9:9: probability G :2:::::1 matrix T 1:::1:1: bits 2.1 * 1.9 ** * 1.7 * **** * 1.4 * ****** Relative 1.2 * ****** Entropy 1.0 ******** (13.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:4423946-4424066 24 1.47e-05 gacacccacg cacacaca gacacaACTA chrX:16147687-16147807 86 1.47e-05 caccgagtca cacacaca tacagttata chr3R:16811868-16811988 111 1.47e-05 GGTAGACACA CACACACA CA chrX:8624908-8625028 9 1.47e-05 AAGAGAGA CACACACA AGCACATATT chr2R:11469547-11469667 60 1.47e-05 ACATGCACGT CACACACA TGTCAGCCGC chr2R:23632299-23632419 45 1.47e-05 CACACTCTCA CACACACA CGAATCGGGC chr2R:14828762-14828882 62 1.47e-05 cacacaaaca cacacaca caaacacgca chrX:8805861-8805981 12 1.47e-05 AGCGCACACG CACACACA CGAACGGCGA chr2L:1972854-1972974 4 1.47e-05 AGG CACACACA CACGCACAGT chr3R:18371489-18371609 113 1.47e-05 cacacacaga cacacaca chr2R:19268789-19268909 100 1.47e-05 CAAAGCAGCG CACACACA CTTGGCGAAA chr2R:9011991-9012111 6 2.84e-05 GCATG CGCACACA GTCGTCGAGG chr3R:28547272-28547392 93 2.84e-05 CACCCAGGCA CGCACACA TTCAAGCCGA chrX:9692796-9692916 17 2.84e-05 CACAAACGCA CGCACACA CGAAACGGGC chr3R:15631079-15631199 90 4.45e-05 ATGCTTTAAA CACACATA TTTTCTCAGT chr3L:14177664-14177784 58 4.45e-05 CGCTCTCACT CACACATA GCGTCTTCTC chr2R:24844910-24845030 51 4.45e-05 GTCGCCGCTG CACACATA CACAGGCGTG chr2R:5726942-5727062 23 5.82e-05 ATCCTGCTTG CACACACG CTCATTCCGC chr3L:9004906-9005026 82 9.03e-05 GAGATAAACA TACACACA TGGCCTGACG chr4:508622-508742 102 9.03e-05 ATTACGATTA CACATACA CGCAGCAGCA chr3L:14600666-14600786 22 9.03e-05 AATAATAAAC TACACACA ATTTTAATTT chr2L:3835303-3835423 105 1.06e-04 TGTGGCCACA CTCACACA ACCGCAAG chrX:5560739-5560859 5 1.33e-04 TTCT CGCACACG CGTAACCTTC chrX:4462063-4462183 19 1.63e-04 TCTTTCATTT CGCATACA CCCCGTCTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4423946-4424066 1.5e-05 23_[+4]_89 chrX:16147687-16147807 1.5e-05 85_[+4]_27 chr3R:16811868-16811988 1.5e-05 110_[+4]_2 chrX:8624908-8625028 1.5e-05 8_[+4]_104 chr2R:11469547-11469667 1.5e-05 59_[+4]_53 chr2R:23632299-23632419 1.5e-05 44_[+4]_68 chr2R:14828762-14828882 1.5e-05 61_[+4]_51 chrX:8805861-8805981 1.5e-05 11_[+4]_101 chr2L:1972854-1972974 1.5e-05 3_[+4]_109 chr3R:18371489-18371609 1.5e-05 112_[+4] chr2R:19268789-19268909 1.5e-05 99_[+4]_13 chr2R:9011991-9012111 2.8e-05 5_[+4]_107 chr3R:28547272-28547392 2.8e-05 92_[+4]_20 chrX:9692796-9692916 2.8e-05 16_[+4]_96 chr3R:15631079-15631199 4.4e-05 89_[+4]_23 chr3L:14177664-14177784 4.4e-05 57_[+4]_55 chr2R:24844910-24845030 4.4e-05 50_[+4]_62 chr2R:5726942-5727062 5.8e-05 22_[+4]_90 chr3L:9004906-9005026 9e-05 81_[+4]_31 chr4:508622-508742 9e-05 101_[+4]_11 chr3L:14600666-14600786 9e-05 21_[+4]_91 chr2L:3835303-3835423 0.00011 104_[+4]_8 chrX:5560739-5560859 0.00013 4_[+4]_108 chrX:4462063-4462183 0.00016 18_[+4]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACA width=8 seqs=24 chrX:4423946-4424066 ( 24) CACACACA 1 chrX:16147687-16147807 ( 86) CACACACA 1 chr3R:16811868-16811988 ( 111) CACACACA 1 chrX:8624908-8625028 ( 9) CACACACA 1 chr2R:11469547-11469667 ( 60) CACACACA 1 chr2R:23632299-23632419 ( 45) CACACACA 1 chr2R:14828762-14828882 ( 62) CACACACA 1 chrX:8805861-8805981 ( 12) CACACACA 1 chr2L:1972854-1972974 ( 4) CACACACA 1 chr3R:18371489-18371609 ( 113) CACACACA 1 chr2R:19268789-19268909 ( 100) CACACACA 1 chr2R:9011991-9012111 ( 6) CGCACACA 1 chr3R:28547272-28547392 ( 93) CGCACACA 1 chrX:9692796-9692916 ( 17) CGCACACA 1 chr3R:15631079-15631199 ( 90) CACACATA 1 chr3L:14177664-14177784 ( 58) CACACATA 1 chr2R:24844910-24845030 ( 51) CACACATA 1 chr2R:5726942-5727062 ( 23) CACACACG 1 chr3L:9004906-9005026 ( 82) TACACACA 1 chr4:508622-508742 ( 102) CACATACA 1 chr3L:14600666-14600786 ( 22) TACACACA 1 chr2L:3835303-3835423 ( 105) CTCACACA 1 chrX:5560739-5560859 ( 5) CGCACACG 1 chrX:4462063-4462183 ( 19) CGCATACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3 E= 4.2e+001 -1123 192 -1123 -166 155 -1123 -19 -266 -1123 205 -1123 -1123 197 -1123 -1123 -1123 -1123 192 -1123 -166 197 -1123 -1123 -1123 -1123 186 -1123 -108 184 -1123 -151 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 4.2e+001 0.000000 0.916667 0.000000 0.083333 0.750000 0.000000 0.208333 0.041667 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.916667 0.000000 0.083333 1.000000 0.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.125000 0.916667 0.000000 0.083333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 regular expression -------------------------------------------------------------------------------- C[AG]CACACA -------------------------------------------------------------------------------- Time 25.90 secs. ******************************************************************************** ******************************************************************************** MOTIF KCGCTSTC MEME-5 width = 8 sites = 33 llr = 287 E-value = 3.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif KCGCTSTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::3::: pos.-specific C :a:a:6:a probability G 5:a::42: matrix T 5:::7:8: bits 2.1 *** * 1.9 *** * 1.7 *** * 1.4 *** * Relative 1.2 *** ** Entropy 1.0 ******** (12.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCGCTCTC consensus G AGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCTSTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:5726942-5727062 66 2.86e-05 GCAAATGGCG GCGCTCTC AGCTGATAGC chr3R:21434364-21434484 89 2.86e-05 AATTTGACAT GCGctctc tttcctccct chr3L:14177664-14177784 47 2.86e-05 CGCCGTCGTC GCGCTCTC ACTCACACAT chr2L:16422780-16422900 8 2.86e-05 TGTCATT TCGCTCTC TCATTGCGAG chr3R:23201170-23201290 27 2.86e-05 AAGAGAAATG GCGCTCTC AGCTCGTGCT chr3R:30764220-30764340 109 2.86e-05 TGCACCGCCG GCGCTCTC TTTC chrX:8757932-8758052 45 2.86e-05 gctctcgctc tcgctctc TGCCGAAGAG chr2L:12085889-12086009 52 2.86e-05 ACCAATCGCA GCGCTCTC CACAACGGCA chr2L:595116-595236 15 2.86e-05 TTGTATTTTT GCGCTCTC TACTTACTTT chr2L:18795994-18796114 68 5.66e-05 TGTCGCCATT tcgctgtc gtctccctta chr4:844636-844756 72 5.66e-05 GATGGTATTA GCGCTGTC TCTGTTGGGC chr3R:4835425-4835545 101 5.66e-05 CCTAGAGCCC TCGCTGTC TCACTCCCTC chrX:5593995-5594115 91 5.66e-05 GACGACTGCA GCGCTGTC GCTCGTGCCA chr2L:1972854-1972974 56 5.66e-05 TGTTGCTCTC TCGCTGTC GCTGCATCTC chr2R:9194952-9195072 60 5.66e-05 GGAAACTGGT TCGCTGTC CGCACCACCC chr3R:4852503-4852623 72 8.43e-05 CTTAGAGTTG TCGCACTC GCACCCATGG chr2L:1970545-1970665 98 8.43e-05 TGCGTCTCAC TCGCACTC ATTTTGGGGG chr2L:6536258-6536378 35 8.43e-05 TGTGAGCGGT GCGCACTC GGAGCAGCCT chr3L:12690820-12690940 87 8.43e-05 ctctttctgg gcgcactc tttctctctc chr2L:3825481-3825601 74 8.43e-05 CCCATCCCTT TCGCACTC CCTGTGCGCA chrX:8805861-8805981 89 8.43e-05 GGCGCATCGC TCGCACTC GTGCTACCGA chr3R:7309624-7309744 71 8.43e-05 TTCAAATGCC TCGCACTC GCCGCCAAAT chr3L:14133113-14133233 28 8.43e-05 CCGCTCCCTG TCGCACTC TATGTACTGG chr2L:2808139-2808259 88 1.10e-04 ggttcggCTG GCGCTCGC GGAACGATCA chr3R:6930585-6930705 55 1.10e-04 GCTCTCCGTC TCGCTCGC TCTGTGCATG chr2R:12955980-12956100 29 1.10e-04 GCTCTCACTC GCGCTCGC CCTTACTGCT chrX:4462063-4462183 101 1.10e-04 GCCATTGCAA TCGCTCGC TCTCTTTCTG chrX:9284448-9284568 85 1.37e-04 AATTCAAGCG GCGCAGTC AAAAGTTAAA chr2R:16386502-16386622 95 1.37e-04 AATCGGAAAA GCGCAGTC AGAAACCGAA chr3L:9019541-9019661 60 1.63e-04 ATGTGTGTGT GCGCTGGC TGGCTGCCTT chr2R:11939510-11939630 83 1.63e-04 TGCGTTTGGT TCGCTGGC TCGTCGGCAG chr2L:18881708-18881828 64 1.63e-04 CTCGCTCCCT TCGCTGGC CTTTTGTTTT chrX:8806763-8806883 4 1.63e-04 CAC TCGCTGGC CGGGCCAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCTSTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:5726942-5727062 2.9e-05 65_[+5]_47 chr3R:21434364-21434484 2.9e-05 88_[+5]_24 chr3L:14177664-14177784 2.9e-05 46_[+5]_66 chr2L:16422780-16422900 2.9e-05 7_[+5]_105 chr3R:23201170-23201290 2.9e-05 26_[+5]_86 chr3R:30764220-30764340 2.9e-05 108_[+5]_4 chrX:8757932-8758052 2.9e-05 44_[+5]_68 chr2L:12085889-12086009 2.9e-05 51_[+5]_61 chr2L:595116-595236 2.9e-05 14_[+5]_98 chr2L:18795994-18796114 5.7e-05 67_[+5]_45 chr4:844636-844756 5.7e-05 71_[+5]_41 chr3R:4835425-4835545 5.7e-05 100_[+5]_12 chrX:5593995-5594115 5.7e-05 90_[+5]_22 chr2L:1972854-1972974 5.7e-05 55_[+5]_57 chr2R:9194952-9195072 5.7e-05 59_[+5]_53 chr3R:4852503-4852623 8.4e-05 71_[+5]_41 chr2L:1970545-1970665 8.4e-05 97_[+5]_15 chr2L:6536258-6536378 8.4e-05 34_[+5]_78 chr3L:12690820-12690940 8.4e-05 86_[+5]_26 chr2L:3825481-3825601 8.4e-05 73_[+5]_39 chrX:8805861-8805981 8.4e-05 88_[+5]_24 chr3R:7309624-7309744 8.4e-05 70_[+5]_42 chr3L:14133113-14133233 8.4e-05 27_[+5]_85 chr2L:2808139-2808259 0.00011 87_[+5]_25 chr3R:6930585-6930705 0.00011 54_[+5]_58 chr2R:12955980-12956100 0.00011 28_[+5]_84 chrX:4462063-4462183 0.00011 100_[+5]_12 chrX:9284448-9284568 0.00014 84_[+5]_28 chr2R:16386502-16386622 0.00014 94_[+5]_18 chr3L:9019541-9019661 0.00016 59_[+5]_53 chr2R:11939510-11939630 0.00016 82_[+5]_30 chr2L:18881708-18881828 0.00016 63_[+5]_49 chrX:8806763-8806883 0.00016 3_[+5]_109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCTSTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KCGCTSTC width=8 seqs=33 chr2R:5726942-5727062 ( 66) GCGCTCTC 1 chr3R:21434364-21434484 ( 89) GCGCTCTC 1 chr3L:14177664-14177784 ( 47) GCGCTCTC 1 chr2L:16422780-16422900 ( 8) TCGCTCTC 1 chr3R:23201170-23201290 ( 27) GCGCTCTC 1 chr3R:30764220-30764340 ( 109) GCGCTCTC 1 chrX:8757932-8758052 ( 45) TCGCTCTC 1 chr2L:12085889-12086009 ( 52) GCGCTCTC 1 chr2L:595116-595236 ( 15) GCGCTCTC 1 chr2L:18795994-18796114 ( 68) TCGCTGTC 1 chr4:844636-844756 ( 72) GCGCTGTC 1 chr3R:4835425-4835545 ( 101) TCGCTGTC 1 chrX:5593995-5594115 ( 91) GCGCTGTC 1 chr2L:1972854-1972974 ( 56) TCGCTGTC 1 chr2R:9194952-9195072 ( 60) TCGCTGTC 1 chr3R:4852503-4852623 ( 72) TCGCACTC 1 chr2L:1970545-1970665 ( 98) TCGCACTC 1 chr2L:6536258-6536378 ( 35) GCGCACTC 1 chr3L:12690820-12690940 ( 87) GCGCACTC 1 chr2L:3825481-3825601 ( 74) TCGCACTC 1 chrX:8805861-8805981 ( 89) TCGCACTC 1 chr3R:7309624-7309744 ( 71) TCGCACTC 1 chr3L:14133113-14133233 ( 28) TCGCACTC 1 chr2L:2808139-2808259 ( 88) GCGCTCGC 1 chr3R:6930585-6930705 ( 55) TCGCTCGC 1 chr2R:12955980-12956100 ( 29) GCGCTCGC 1 chrX:4462063-4462183 ( 101) TCGCTCGC 1 chrX:9284448-9284568 ( 85) GCGCAGTC 1 chr2R:16386502-16386622 ( 95) GCGCAGTC 1 chr3L:9019541-9019661 ( 60) GCGCTGGC 1 chr2R:11939510-11939630 ( 83) TCGCTGGC 1 chr2L:18881708-18881828 ( 64) TCGCTGGC 1 chrX:8806763-8806883 ( 4) TCGCTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCTSTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0849 E= 3.1e+001 -1169 -1169 103 96 -1169 205 -1169 -1169 -1169 -1169 207 -1169 -1169 205 -1169 -1169 24 -1169 -1169 140 -1169 140 61 -1169 -1169 -1169 3 152 -1169 205 -1169 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCTSTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 3.1e+001 0.000000 0.000000 0.484848 0.515152 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.303030 0.000000 0.000000 0.696970 0.000000 0.636364 0.363636 0.000000 0.000000 0.000000 0.242424 0.757576 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCTSTC MEME-5 regular expression -------------------------------------------------------------------------------- [TG]CGC[TA][CG][TG]C -------------------------------------------------------------------------------- Time 31.88 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1669704-1669824 9.99e-03 71_[+1(7.98e-05)]_41 chr2L:1644376-1644496 2.09e-02 120 chr3R:16038138-16038258 8.38e-02 97_[+3(3.25e-05)]_15 chr2R:19268789-19268909 8.20e-05 30_[+3(3.25e-05)]_61_[+4(1.47e-05)]_\ 13 chr2R:9988355-9988475 7.85e-01 120 chr2L:5421842-5421962 4.56e-02 45_[+1(2.68e-05)]_[+1(2.68e-05)]_59 chr2R:13042253-13042373 2.74e-02 120 chr2R:9194952-9195072 7.47e-03 59_[+5(5.66e-05)]_53 chr2L:507341-507461 3.96e-02 34_[+3(3.25e-05)]_78 chr2R:23046155-23046275 2.24e-01 55_[+1(3.89e-05)]_17_[+1(3.89e-05)]_\ 32 chr3R:31062156-31062276 2.53e-01 120 chr2R:16386502-16386622 2.39e-02 120 chr3R:6741896-6742016 2.01e-02 83_[+1(1.30e-05)]_29 chr2L:595116-595236 7.24e-03 14_[+5(2.86e-05)]_98 chr2R:12884454-12884574 4.46e-03 39_[+2(6.18e-05)]_26_[+1(2.68e-05)]_\ 39 chr3R:29526795-29526915 2.33e-01 56_[+3(3.25e-05)]_56 chr2L:15111527-15111647 4.05e-03 73_[+1(1.30e-05)]_9_[+3(3.25e-05)]_\ 22 chr3L:14600666-14600786 2.68e-02 21_[+4(9.03e-05)]_91 chr3L:9019336-9019456 4.69e-02 48_[+2(6.18e-05)]_64 chr3L:2488777-2488897 3.89e-01 120 chr3L:21460288-21460408 2.59e-02 23_[+1(1.30e-05)]_89 chr3L:11927418-11927538 1.37e-02 2_[+1(1.30e-05)]_110 chr2R:11542137-11542257 2.55e-01 120 chr3R:25080564-25080684 3.36e-03 52_[+1(1.30e-05)]_60 chr2L:20783252-20783372 1.90e-02 66_[+5(8.43e-05)]_46 chr2L:12085889-12086009 2.55e-03 51_[+5(2.86e-05)]_10_[+2(1.50e-05)]_\ 27_[+2(1.50e-05)]_8 chr3R:18371489-18371609 4.70e-02 102_[+4(1.47e-05)]_2_[+4(1.47e-05)] chr2R:18109672-18109792 1.93e-01 120 chr2R:24844910-24845030 7.63e-04 50_[+4(4.45e-05)]_23_[+1(1.30e-05)]_\ 31 chr2R:20903598-20903718 1.98e-01 120 chr2R:19268994-19269114 1.19e-01 86_[+1(1.30e-05)]_26 chr2L:594916-595036 6.16e-02 28_[+2(8.00e-05)]_[+2(1.50e-05)]_76 chr2L:18866753-18866873 8.35e-01 120 chr2L:3835303-3835423 3.69e-03 120 chrX:9771125-9771245 1.27e-01 120 chr3R:16969449-16969569 1.55e-01 120 chr3R:16523546-16523666 2.69e-01 120 chr3L:14133113-14133233 3.66e-02 27_[+5(8.43e-05)]_40_[+2(8.00e-05)]_\ 37 chr3R:13877312-13877432 2.91e-01 52_[+1(3.89e-05)]_60 chr3L:14579056-14579176 1.87e-02 37_[+2(9.53e-05)]_10_[+2(8.00e-05)]_\ 57 chr3L:9041133-9041253 7.70e-04 26_[+2(6.18e-05)]_13_[+3(3.25e-05)]_\ 65 chr3R:16920546-16920666 3.17e-03 71_[+3(3.25e-05)]_41 chr2L:3540139-3540259 2.32e-03 17_[+2(8.00e-05)]_95 chr3R:16830134-16830254 9.50e-04 98_[+2(3.17e-05)]_4_[+2(6.18e-05)]_\ 2 chr2R:13042463-13042583 8.07e-02 65_[+3(3.25e-05)]_47 chr3R:6683287-6683407 5.27e-02 38_[+1(6.57e-05)]_74 chr3L:12434687-12434807 3.94e-01 120 chr3R:8477513-8477633 9.91e-01 120 chr3R:16899878-16899998 1.84e-04 21_[+1(1.30e-05)]_16_[+2(8.00e-05)]_\ 67 chr3L:14599658-14599778 3.80e-03 66_[+2(8.00e-05)]_46 chr2L:1644603-1644723 1.46e-01 120 chr4:704456-704576 8.18e-02 28_[+1(6.57e-05)]_84 chr2L:377794-377914 7.54e-02 120 chr3R:8277943-8278063 5.63e-01 120 chr2L:1972854-1972974 2.45e-04 3_[+4(1.47e-05)]_44_[+5(5.66e-05)]_\ 6_[+2(8.00e-05)]_43 chr2R:23637953-23638073 6.19e-01 120 chr3R:21417046-21417166 1.84e-01 120 chrX:9774129-9774249 3.87e-01 120 chr2R:21466239-21466359 4.58e-01 120 chrX:5593995-5594115 1.08e-03 22_[+1(1.30e-05)]_44_[+1(1.30e-05)]_\ 8_[+5(5.66e-05)]_22 chr3R:7936838-7936958 7.71e-01 120 chrX:4462063-4462183 7.62e-04 6_[+2(8.00e-05)]_17_[+2(8.00e-05)]_\ 65_[+5(2.86e-05)]_8 chr3L:20695288-20695408 9.97e-01 120 chr2R:12955980-12956100 2.46e-02 120 chrX:9692796-9692916 3.66e-05 16_[+4(2.84e-05)]_21_[+1(2.68e-05)]_\ 67 chr3R:7309624-7309744 2.65e-02 70_[+5(8.43e-05)]_42 chrX:8805861-8805981 2.54e-05 11_[+4(1.47e-05)]_43_[+1(1.30e-05)]_\ 18_[+5(8.43e-05)]_24 chr3R:29757880-29758000 7.27e-01 120 chr3R:17944081-17944201 3.18e-01 120 chr2L:3539355-3539475 6.72e-01 120 chr2R:18878348-18878468 6.05e-01 120 chr3R:16782544-16782664 4.54e-01 120 chr2R:14790613-14790733 1.03e-02 4_[+2(8.00e-05)]_100_[+1(3.89e-05)] chr4:989513-989633 1.77e-01 120 chr3L:13403630-13403750 1.31e-02 120 chr3R:4835425-4835545 2.51e-02 100_[+5(5.66e-05)]_4_[+2(9.53e-05)] chr3R:6678635-6678755 2.27e-03 70_[+2(1.50e-05)]_42 chr2R:25061738-25061858 9.89e-03 24_[+2(1.50e-05)]_54_[+2(1.50e-05)]_\ 26 chr2L:3825481-3825601 2.27e-03 73_[+5(8.43e-05)]_21_[+2(8.00e-05)]_\ 10 chrX:4554784-4554904 8.46e-01 120 chr3L:15641722-15641842 7.37e-01 120 chrX:17397212-17397332 1.89e-02 78_[+1(6.57e-05)]_34 chrX:8757932-8758052 7.93e-04 30_[+2(1.50e-05)]_4_[+2(1.50e-05)]_\ 70 chr3R:13843697-13843817 2.88e-02 [+1(9.30e-05)]_112 chr3R:16423493-16423613 3.38e-01 120 chr3L:19682997-19683117 7.08e-02 120 chr4:844636-844756 2.61e-02 71_[+5(5.66e-05)]_41 chrX:10722218-10722338 5.14e-01 120 chr2L:18869347-18869467 3.42e-01 120 chr3R:16886535-16886655 9.86e-02 66_[+1(6.57e-05)]_46 chr3R:6848646-6848766 2.54e-05 42_[+1(2.68e-05)]_25_[+2(1.50e-05)]_\ 37 chr3L:432672-432792 2.44e-01 120 chr2R:11475508-11475628 8.61e-02 53_[+1(3.89e-05)]_59 chr4:508622-508742 4.41e-02 101_[+4(9.03e-05)]_11 chr2L:18795994-18796114 1.69e-02 67_[+5(5.66e-05)]_24_[+2(3.17e-05)]_\ 13 chr3R:6893208-6893328 1.36e-01 120 chr3R:30764220-30764340 4.07e-04 75_[+2(3.17e-05)]_4_[+2(3.17e-05)]_\ 13_[+5(2.86e-05)]_4 chr2L:5029492-5029612 6.90e-01 120 chr3R:6930585-6930705 1.62e-03 52_[+2(1.50e-05)]_31_[+2(1.50e-05)]_\ 2_[+2(8.00e-05)]_11 chr2L:15275943-15276063 7.59e-01 120 chr3L:21460487-21460607 9.85e-01 120 chr3R:30101015-30101135 1.52e-01 120 chr2L:18936221-18936341 1.62e-02 120 chr3R:8038021-8038141 2.53e-01 120 chr3R:29617271-29617391 5.63e-01 120 chr2R:14828762-14828882 1.67e-01 47_[+4(1.47e-05)]_4_[+4(1.47e-05)]_\ 53 chr2L:12822737-12822857 4.81e-01 120 chr3L:1208397-1208517 9.52e-01 120 chr2R:25215354-25215474 5.96e-02 120 chr3L:21808051-21808171 4.81e-01 120 chr3L:19663861-19663981 1.24e-01 56_[+3(3.25e-05)]_56 chr3R:6812159-6812279 2.64e-01 120 chr2L:3538619-3538739 1.58e-04 63_[+2(1.50e-05)]_49 chr2R:12956179-12956299 8.48e-01 120 chr3R:28547272-28547392 1.72e-02 92_[+4(2.84e-05)]_20 chr2R:24813681-24813801 4.24e-01 120 chr3L:1364662-1364782 9.63e-01 120 chr3R:23201170-23201290 2.75e-03 26_[+5(2.86e-05)]_76_[+5(8.43e-05)]_\ 2 chr2L:3416520-3416640 2.10e-01 120 chrX:9729114-9729234 2.76e-04 53_[+2(1.50e-05)]_59 chr2R:9979189-9979309 6.30e-03 21_[+2(6.18e-05)]_91 chr2R:23225233-23225353 7.02e-02 7_[+1(1.30e-05)]_105 chrX:18312510-18312630 6.73e-01 120 chr3R:10212924-10213044 4.22e-01 120 chr2R:19254148-19254268 2.32e-01 120 chr3L:16974690-16974810 3.28e-01 120 chr3R:6850042-6850162 9.61e-03 24_[+1(2.68e-05)]_88 chr3L:6270390-6270510 1.18e-01 91_[+3(8.38e-05)]_21 chr2R:22545603-22545723 4.28e-01 120 chr2R:19254349-19254469 5.54e-01 120 chr2L:2808139-2808259 2.41e-01 120 chrX:8806763-8806883 2.11e-03 94_[+3(8.38e-05)]_18 chr3R:25740406-25740526 2.83e-01 120 chr3R:8190998-8191118 2.45e-05 26_[+3(3.25e-05)]_8_[+1(6.57e-05)]_\ 26_[+2(1.50e-05)]_36 chr3R:16948736-16948856 1.74e-02 26_[+1(1.30e-05)]_86 chr3R:25094556-25094676 1.46e-01 19_[+3(3.25e-05)]_9_[+3(4.78e-05)]_\ 76 chr2L:7175908-7176028 2.36e-03 13_[+3(4.78e-05)]_91_[+1(7.98e-05)] chr3L:1688781-1688901 2.97e-01 120 chrX:18309471-18309591 1.17e-01 99_[+2(6.18e-05)]_13 chr3R:15409249-15409369 6.35e-01 120 chrX:335064-335184 9.05e-01 120 chr2L:9981934-9982054 5.89e-01 120 chr3L:13028909-13029029 4.48e-01 120 chr2R:11528319-11528439 9.09e-04 22_[+2(9.53e-05)]_66_[+3(3.25e-05)]_\ 16 chr3L:6371547-6371667 6.35e-01 120 chrX:4411534-4411654 1.28e-04 50_[+2(4.81e-05)]_20_[+3(3.25e-05)]_\ 34 chr2R:9011991-9012111 1.70e-03 5_[+4(2.84e-05)]_107 chrX:9284448-9284568 1.85e-01 120 chr3R:11353635-11353755 9.32e-01 120 chrX:17678161-17678281 1.27e-01 53_[+3(8.38e-05)]_59 chr3L:19699758-19699878 2.48e-01 120 chr3L:12690820-12690940 1.99e-02 86_[+5(8.43e-05)]_2_[+2(3.17e-05)]_\ 2_[+2(6.18e-05)]_6 chr3L:4619926-4620046 5.74e-01 120 chr2L:12655987-12656107 6.06e-02 33_[+2(3.17e-05)]_6_[+2(8.00e-05)]_\ 65 chr2R:22243832-22243952 2.15e-01 37_[+1(7.98e-05)]_75 chr2L:11326585-11326705 1.00e+00 120 chrX:13541078-13541198 6.16e-02 120 chr2R:23632299-23632419 9.52e-03 42_[+4(1.47e-05)]_70 chr2R:8030922-8031042 4.78e-02 59_[+1(1.30e-05)]_53 chr2R:11048143-11048263 5.57e-01 120 chr3R:7310815-7310935 9.12e-01 120 chrX:21044577-21044697 9.21e-01 120 chr2L:16422780-16422900 4.80e-03 7_[+5(2.86e-05)]_36_[+2(8.00e-05)]_\ 4_[+2(3.17e-05)]_[+2(1.50e-05)]_41 chr3R:12244609-12244729 3.52e-02 64_[+1(1.30e-05)]_48 chr2R:12946278-12946398 5.46e-01 120 chr3R:16847337-16847457 2.04e-04 4_[+2(1.50e-05)]_5_[+3(3.25e-05)]_\ 95 chr2L:6508859-6508979 5.36e-01 120 chr3L:7948015-7948135 5.86e-03 69_[+1(1.30e-05)]_43 chrX:3437642-3437762 9.69e-01 120 chr3R:21931428-21931548 2.91e-01 12_[+3(8.38e-05)]_100 chrX:5560739-5560859 9.03e-03 120 chr3R:13901603-13901723 2.71e-01 120 chr3L:3626285-3626405 7.47e-01 120 chrX:9693937-9694057 2.20e-02 9_[+1(6.57e-05)]_62_[+1(1.30e-05)]_\ 2_[+1(1.30e-05)]_23 chr3R:19255446-19255566 9.51e-01 120 chr2R:11469547-11469667 1.69e-04 [+4(5.82e-05)]_23_[+2(9.53e-05)]_20_\ [+4(1.47e-05)]_31_[+2(1.50e-05)]_14 chr2R:12904504-12904624 1.19e-02 24_[+1(2.68e-05)]_88 chr3L:6269150-6269270 9.18e-01 120 chr3L:14177664-14177784 2.73e-05 46_[+5(2.86e-05)]_3_[+4(4.45e-05)]_\ 8_[+2(8.00e-05)]_39 chrX:739960-740080 8.65e-01 120 chr3L:18137329-18137449 8.79e-01 120 chrX:8624908-8625028 3.49e-06 8_[+4(1.47e-05)]_31_[+2(1.50e-05)]_\ 65 chr3R:14389415-14389535 9.73e-01 120 chr2L:17750310-17750430 7.80e-01 120 chr3L:3624885-3625005 1.81e-03 89_[+2(1.50e-05)]_[+2(8.00e-05)]_15 chrX:14134028-14134148 6.38e-02 32_[+3(8.38e-05)]_80 chr2L:1651233-1651353 4.72e-01 120 chr3R:13875151-13875271 6.06e-04 13_[+2(1.50e-05)]_99 chrX:17768233-17768353 6.41e-04 10_[+3(3.25e-05)]_31_[+1(3.89e-05)]_\ 63 chr2L:16881172-16881292 8.10e-01 120 chr3R:21434364-21434484 2.58e-03 44_[+5(5.66e-05)]_36_[+5(2.86e-05)]_\ 9_[+2(3.17e-05)]_7 chr2L:18881708-18881828 8.31e-02 120 chr3R:11937619-11937739 5.34e-01 120 chr3R:7313098-7313218 1.11e-01 64_[+1(1.30e-05)]_48 chr3L:9004906-9005026 2.96e-03 81_[+4(9.03e-05)]_22_[+1(6.57e-05)]_\ 1 chr3R:31311116-31311236 6.84e-01 120 chr2L:15459062-15459182 9.87e-01 120 chr3R:9157922-9158042 8.21e-01 120 chr3L:19674461-19674581 5.40e-01 120 chr2L:3662496-3662616 3.93e-02 120 chrX:14653783-14653903 5.08e-01 120 chr3R:21446577-21446697 3.33e-02 91_[+1(1.30e-05)]_21 chr3R:10622343-10622463 1.32e-03 11_[+2(1.50e-05)]_101 chr3L:2411058-2411178 7.83e-01 120 chr2R:8018899-8019019 3.50e-02 94_[+1(6.57e-05)]_18 chr2L:11386543-11386663 8.93e-01 120 chr3L:14350263-14350383 5.40e-01 120 chr2L:19865898-19866018 9.80e-01 120 chrX:2140624-2140744 6.84e-02 36_[+3(4.78e-05)]_76 chr3R:16811868-16811988 5.90e-05 25_[+1(1.30e-05)]_73_[+4(1.47e-05)]_\ 6 chr3L:776402-776522 5.56e-01 120 chr2R:18312607-18312727 5.15e-01 120 chr3R:18787340-18787460 3.68e-01 120 chr3R:15993231-15993351 9.74e-01 120 chrX:17789790-17789910 3.47e-01 120 chr2R:11939510-11939630 8.85e-02 120 chr2L:3836616-3836736 1.05e-01 52_[+1(3.89e-05)]_17_[+1(6.57e-05)]_\ 35 chr2R:5726942-5727062 7.23e-05 22_[+4(5.82e-05)]_35_[+5(2.86e-05)]_\ 23_[+2(6.18e-05)]_16 chr3L:388291-388411 9.44e-02 120 chr2R:25052515-25052635 4.55e-02 120 chr3L:2117129-2117249 6.63e-02 120 chrX:7537944-7538064 3.27e-01 120 chr2L:6536258-6536378 2.44e-03 34_[+5(8.43e-05)]_11_[+2(1.50e-05)]_\ 59 chrX:16147687-16147807 2.53e-03 65_[+4(4.45e-05)]_10_[+4(1.47e-05)]_\ 29 chr3L:3096166-3096286 9.67e-01 120 chr3R:31688831-31688951 9.41e-01 120 chr2L:1970545-1970665 6.58e-04 20_[+5(2.86e-05)]_69_[+5(8.43e-05)]_\ 15 chr3L:166611-166731 1.86e-01 85_[+3(4.78e-05)]_27 chr3L:24723875-24723995 4.34e-01 120 chr3R:4852503-4852623 3.89e-02 71_[+5(8.43e-05)]_41 chrX:12000390-12000510 3.52e-01 120 chr3L:6904096-6904216 3.46e-03 77_[+2(1.50e-05)]_26_[+2(1.50e-05)]_\ 1 chrX:4423946-4424066 1.86e-03 23_[+4(1.47e-05)]_47_[+1(1.30e-05)]_\ 12_[+1(2.68e-05)]_14 chrX:13568332-13568452 4.72e-01 120 chr3R:16882631-16882751 2.13e-01 120 chr2L:2454961-2455081 4.08e-01 120 chr3L:20635749-20635869 8.98e-01 120 chr3L:19190909-19191029 2.66e-01 120 chr2L:14236272-14236392 4.45e-01 120 chr3R:16403770-16403890 5.08e-01 120 chr3R:25094758-25094878 2.34e-02 68_[+2(1.50e-05)]_44 chr3L:4545828-4545948 8.65e-01 120 chr2R:8307853-8307973 8.33e-01 120 chr3R:6913103-6913223 5.33e-03 29_[+2(6.18e-05)]_83 chr2L:9581673-9581793 4.32e-01 120 chr3R:15631079-15631199 5.01e-02 89_[+4(4.45e-05)]_23 chr3L:9019541-9019661 1.00e-01 120 chr3L:748543-748663 5.30e-03 39_[+1(1.30e-05)]_73 chr3L:20552054-20552174 5.02e-01 120 chr3L:15258547-15258667 5.18e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************