******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Evar3-9.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:10238898-10239018 1.0000 120 chr4:1123635-1123755 1.0000 120 chr3L:19446820-19446940 1.0000 120 chr3R:13218993-13219113 1.0000 120 chr2L:5778401-5778521 1.0000 120 chr3L:882419-882539 1.0000 120 chr2L:10314493-10314613 1.0000 120 chr2L:9400352-9400472 1.0000 120 chr3R:12080399-12080519 1.0000 120 chrX:12539346-12539466 1.0000 120 chr3R:15119856-15119976 1.0000 120 chr3R:25855567-25855687 1.0000 120 chr3R:10132970-10133090 1.0000 120 chr3R:4400141-4400261 1.0000 120 chr3R:7080419-7080539 1.0000 120 chr3R:27621965-27622085 1.0000 120 chr2L:10239125-10239245 1.0000 120 chr3L:21011437-21011557 1.0000 120 chr3R:19875735-19875855 1.0000 120 chr3L:2572140-2572260 1.0000 120 chr3L:26014121-26014241 1.0000 120 chr3L:19087969-19088089 1.0000 120 chr3R:19093379-19093499 1.0000 120 chr4:958517-958637 1.0000 120 chrX:6179552-6179672 1.0000 120 chr3L:17652093-17652213 1.0000 120 chr3L:8094511-8094631 1.0000 120 chr2L:16548533-16548653 1.0000 120 chr2L:10314693-10314813 1.0000 120 chrX:278522-278642 1.0000 120 chrX:6152021-6152141 1.0000 120 chrX:7095034-7095154 1.0000 120 chr2R:21895001-21895121 1.0000 120 chrX:5852898-5853018 1.0000 120 chr3L:23338144-23338264 1.0000 120 chr3L:23125821-23125941 1.0000 120 chr2L:3755211-3755331 1.0000 120 chr4:570829-570949 1.0000 120 chr2R:9078227-9078347 1.0000 120 chr3L:14359973-14360093 1.0000 120 chrX:9350466-9350586 1.0000 120 chr3L:2411036-2411156 1.0000 120 chr4:610532-610652 1.0000 120 chr3L:17603676-17603796 1.0000 120 chr3L:3496790-3496910 1.0000 120 chrX:3096401-3096521 1.0000 120 chrX:8542814-8542934 1.0000 120 chr2L:21263902-21264022 1.0000 120 chr4:179414-179534 1.0000 120 chr4:660640-660760 1.0000 120 chr3R:8811010-8811130 1.0000 120 chr2R:4671669-4671789 1.0000 120 chr2L:1048475-1048595 1.0000 120 chr4:788523-788643 1.0000 120 chr2L:5569706-5569826 1.0000 120 chr3L:16544369-16544489 1.0000 120 chrX:5970226-5970346 1.0000 120 chrX:14669318-14669438 1.0000 120 chr3R:5055477-5055597 1.0000 120 chrX:15890323-15890443 1.0000 120 chr3L:20732615-20732735 1.0000 120 chr3L:12734785-12734905 1.0000 120 chr3L:22864420-22864540 1.0000 120 chr3R:24580484-24580604 1.0000 120 chr4:1196904-1197024 1.0000 120 chrX:843482-843602 1.0000 120 chr3R:30083341-30083461 1.0000 120 chr3L:19326186-19326306 1.0000 120 chr3L:9333856-9333976 1.0000 120 chr4:1060929-1061049 1.0000 120 chr3R:17231626-17231746 1.0000 120 chr4:63476-63596 1.0000 120 chr3L:17113334-17113454 1.0000 120 chr3R:22503765-22503885 1.0000 120 chr3L:16289252-16289372 1.0000 120 chr2R:10914933-10915053 1.0000 120 chr3R:8256205-8256325 1.0000 120 chr4:1181845-1181965 1.0000 120 chr2L:10373977-10374097 1.0000 120 chr2R:22420663-22420783 1.0000 120 chr3R:21420103-21420223 1.0000 120 chr2L:8612855-8612975 1.0000 120 chr4:670979-671099 1.0000 120 chr3R:9938656-9938776 1.0000 120 chr3R:32052217-32052337 1.0000 120 chr3L:15923453-15923573 1.0000 120 chr3L:5183349-5183469 1.0000 120 chrX:19164887-19165007 1.0000 120 chr3L:14847455-14847575 1.0000 120 chr2R:12537606-12537726 1.0000 120 chr2R:1345173-1345293 1.0000 120 chr2L:16498211-16498331 1.0000 120 chr3L:7862013-7862133 1.0000 120 chr2L:18548813-18548933 1.0000 120 chr2L:22924590-22924710 1.0000 120 chr2L:18153208-18153328 1.0000 120 chr2R:4829093-4829213 1.0000 120 chr2R:24139176-24139296 1.0000 120 chrX:10601734-10601854 1.0000 120 chr4:210120-210240 1.0000 120 chr3L:22461397-22461517 1.0000 120 chr2L:22239756-22239876 1.0000 120 chr3L:16697138-16697258 1.0000 120 chr2R:23869482-23869602 1.0000 120 chr2L:18658354-18658474 1.0000 120 chr3L:10818397-10818517 1.0000 120 chr3R:21612998-21613118 1.0000 120 chr2R:5293872-5293992 1.0000 120 chr2L:10366531-10366651 1.0000 120 chr3R:23067651-23067771 1.0000 120 chr2R:22529694-22529814 1.0000 120 chr2R:20327029-20327149 1.0000 120 chr4:444018-444138 1.0000 120 chr3L:13478734-13478854 1.0000 120 chr3L:11609638-11609758 1.0000 120 chrX:15803006-15803126 1.0000 120 chr3R:26280507-26280627 1.0000 120 chr3L:5280192-5280312 1.0000 120 chr4:904844-904964 1.0000 120 chr3L:25115921-25116041 1.0000 120 chrX:5970491-5970611 1.0000 120 chr2R:4130768-4130888 1.0000 120 chrX:19453315-19453435 1.0000 120 chr3R:16213844-16213964 1.0000 120 chr2R:5363168-5363288 1.0000 120 chr2L:3880282-3880402 1.0000 120 chr3R:15547891-15548011 1.0000 120 chr3R:20829586-20829706 1.0000 120 chr3R:18167532-18167652 1.0000 120 chr3R:21188169-21188289 1.0000 120 chr3L:11291665-11291785 1.0000 120 chr3R:26333420-26333540 1.0000 120 chrX:12241203-12241323 1.0000 120 chr3L:16060963-16061083 1.0000 120 chr2R:11044582-11044702 1.0000 120 chr2L:1837857-1837977 1.0000 120 chr2L:8746405-8746525 1.0000 120 chr3L:1083444-1083564 1.0000 120 chr3R:11869872-11869992 1.0000 120 chr2L:20808330-20808450 1.0000 120 chr3L:23339134-23339254 1.0000 120 chrX:16580082-16580202 1.0000 120 chr3L:5554485-5554605 1.0000 120 chr2R:7879087-7879207 1.0000 120 chrX:13320934-13321054 1.0000 120 chr3R:24817254-24817374 1.0000 120 chr4:1061148-1061268 1.0000 120 chr2R:11852404-11852524 1.0000 120 chrX:19964323-19964443 1.0000 120 chr2R:12218869-12218989 1.0000 120 chr3L:19338459-19338579 1.0000 120 chr2R:10160490-10160610 1.0000 120 chr3R:8577834-8577954 1.0000 120 chr3L:11450656-11450776 1.0000 120 chr2R:21662535-21662655 1.0000 120 chrX:3019727-3019847 1.0000 120 chr3R:28118248-28118368 1.0000 120 chr2L:10227023-10227143 1.0000 120 chrX:14583310-14583430 1.0000 120 chr3R:20008834-20008954 1.0000 120 chr3L:1880823-1880943 1.0000 120 chr3R:28599614-28599734 1.0000 120 chr3L:797098-797218 1.0000 120 chr2L:9564649-9564769 1.0000 120 chr3L:15034561-15034681 1.0000 120 chrX:10387814-10387934 1.0000 120 chr3R:28327362-28327482 1.0000 120 chr3L:13965003-13965123 1.0000 120 chr3R:27557145-27557265 1.0000 120 chr2R:4471113-4471233 1.0000 120 chr2L:10698108-10698228 1.0000 120 chrX:13764609-13764729 1.0000 120 chr3L:3760778-3760898 1.0000 120 chr3R:12451505-12451625 1.0000 120 chr2L:21573219-21573339 1.0000 120 chrX:20434798-20434918 1.0000 120 chr2R:13507241-13507361 1.0000 120 chr3R:26105958-26106078 1.0000 120 chr3L:25120564-25120684 1.0000 120 chrX:18004280-18004400 1.0000 120 chr3L:18029998-18030118 1.0000 120 chr2R:9388651-9388771 1.0000 120 chr2R:24629544-24629664 1.0000 120 chr3R:26117778-26117898 1.0000 120 chr2R:17698931-17699051 1.0000 120 chr2R:5701953-5702073 1.0000 120 chr3L:8029499-8029619 1.0000 120 chr3R:26915452-26915572 1.0000 120 chr3L:14999691-14999811 1.0000 120 chr3R:22108466-22108586 1.0000 120 chr3R:4400348-4400468 1.0000 120 chr3R:5065136-5065256 1.0000 120 chr3R:26121136-26121256 1.0000 120 chr2L:3507516-3507636 1.0000 120 chr2L:1362354-1362474 1.0000 120 chrX:947531-947651 1.0000 120 chr3R:14875790-14875910 1.0000 120 chr4:867043-867163 1.0000 120 chr2R:16581811-16581931 1.0000 120 chr2L:10276653-10276773 1.0000 120 chr3L:8440884-8441004 1.0000 120 chr3R:14284611-14284731 1.0000 120 chr2R:4243111-4243231 1.0000 120 chr3L:6125244-6125364 1.0000 120 chr2R:5604846-5604966 1.0000 120 chr2R:10123543-10123663 1.0000 120 chrX:5689567-5689687 1.0000 120 chrX:5285944-5286064 1.0000 120 chr4:206017-206137 1.0000 120 chr2L:10760720-10760840 1.0000 120 chrX:16275938-16276058 1.0000 120 chrX:9119334-9119454 1.0000 120 chrX:17330473-17330593 1.0000 120 chr3R:5861442-5861562 1.0000 120 chr3L:8445092-8445212 1.0000 120 chr4:359823-359943 1.0000 120 chr3R:29251516-29251636 1.0000 120 chr3L:5185540-5185660 1.0000 120 chr2L:12046703-12046823 1.0000 120 chrX:18899969-18900089 1.0000 120 chr3R:15128972-15129092 1.0000 120 chr2R:13261826-13261946 1.0000 120 chr4:1030971-1031091 1.0000 120 chr2R:11178729-11178849 1.0000 120 chrX:9120960-9121080 1.0000 120 chr3L:3786981-3787101 1.0000 120 chr3L:14363164-14363284 1.0000 120 chr2L:19930229-19930349 1.0000 120 chr2L:15248688-15248808 1.0000 120 chr3L:6220255-6220375 1.0000 120 chr2L:22169242-22169362 1.0000 120 chr4:663206-663326 1.0000 120 chr3R:19627921-19628041 1.0000 120 chr3R:16209142-16209262 1.0000 120 chr3R:22121359-22121479 1.0000 120 chr3R:4311403-4311523 1.0000 120 chr3L:5604067-5604187 1.0000 120 chr2R:21018435-21018555 1.0000 120 chr2R:17469323-17469443 1.0000 120 chr3L:13022987-13023107 1.0000 120 chr3R:14048992-14049112 1.0000 120 chr3L:3770959-3771079 1.0000 120 chr2L:16743105-16743225 1.0000 120 chr2R:19127975-19128095 1.0000 120 chr3L:8629147-8629267 1.0000 120 chr2L:3805336-3805456 1.0000 120 chr3R:11872814-11872934 1.0000 120 chr3L:1216589-1216709 1.0000 120 chr3R:18438845-18438965 1.0000 120 chr3R:23722049-23722169 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Evar3-9/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Evar3-9.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.351 C 0.156 G 0.151 T 0.342 Background letter frequencies (from file dataset with add-one prior applied): A 0.351 C 0.156 G 0.151 T 0.342 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GKGCCGCC MEME-1 width = 8 sites = 9 llr = 98 E-value = 1.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GKGCCGCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::::2 pos.-specific C 1::89:97 probability G 86a2:a11 matrix T :4::1::: bits 2.7 * * 2.5 * * 2.2 * *** 1.9 ***** Relative 1.6 * ***** Entropy 1.4 * ***** (15.6 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGCCGCC consensus T G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCCGCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:16743105-16743225 70 1.60e-06 GTAATCTTAT GGGCCGCG CTTTTTGAGG chrX:15803006-15803126 73 2.29e-06 TACATACAGT GGGCCGCA TCCACTAGTT chrX:16275938-16276058 1 2.91e-06 . GGGCCGGC ATAGCGATTG chr2L:1362354-1362474 50 3.59e-06 GATTCCGTTT GTGGCGCC ATCTCTTCGC chrX:843482-843602 31 3.59e-06 AAAATATTAC GTGGCGCC ATCTATATCT chr3L:14847455-14847575 63 4.98e-06 AATATTTTAT AGGCCGCC TATTTAAAAG chr2R:13507241-13507361 105 5.65e-06 CGTCAACAAG GGGCTGCC ACCCCTTT chr4:210120-210240 61 7.51e-06 CCCTGTGCAA GTGCCGCA TTACGGTTCT chr2L:10373977-10374097 85 8.90e-06 AGAAAATATC CTGCCGCC GAATTTGGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCCGCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:16743105-16743225 1.6e-06 69_[+1]_43 chrX:15803006-15803126 2.3e-06 72_[+1]_40 chrX:16275938-16276058 2.9e-06 [+1]_112 chr2L:1362354-1362474 3.6e-06 49_[+1]_63 chrX:843482-843602 3.6e-06 30_[+1]_82 chr3L:14847455-14847575 5e-06 62_[+1]_50 chr2R:13507241-13507361 5.7e-06 104_[+1]_8 chr4:210120-210240 7.5e-06 60_[+1]_52 chr2L:10373977-10374097 8.9e-06 84_[+1]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCCGCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GKGCCGCC width=8 seqs=9 chr2L:16743105-16743225 ( 70) GGGCCGCG 1 chrX:15803006-15803126 ( 73) GGGCCGCA 1 chrX:16275938-16276058 ( 1) GGGCCGGC 1 chr2L:1362354-1362474 ( 50) GTGGCGCC 1 chrX:843482-843602 ( 31) GTGGCGCC 1 chr3L:14847455-14847575 ( 63) AGGCCGCC 1 chr2R:13507241-13507361 ( 105) GGGCTGCC 1 chr4:210120-210240 ( 61) GTGCCGCA 1 chr2L:10373977-10374097 ( 85) CTGCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCCGCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4638 E= 1.9e+003 -166 -49 237 -982 -982 -982 188 38 -982 -982 273 -982 -982 232 56 -982 -982 251 -982 -162 -982 -982 273 -982 -982 251 -44 -982 -66 209 -44 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCCGCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.9e+003 0.111111 0.111111 0.777778 0.000000 0.000000 0.000000 0.555556 0.444444 0.000000 0.000000 1.000000 0.000000 0.000000 0.777778 0.222222 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.222222 0.666667 0.111111 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCCGCC MEME-1 regular expression -------------------------------------------------------------------------------- G[GT]G[CG]CGC[CA] -------------------------------------------------------------------------------- Time 8.65 secs. ******************************************************************************** ******************************************************************************** MOTIF CACWGWGM MEME-2 width = 8 sites = 21 llr = 197 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACWGWGM MEME-2 Description -------------------------------------------------------------------------------- Simplified A :8:4:5:6 pos.-specific C a:a::::4 probability G :2::a1a: matrix T :::6:4:: bits 2.7 * * * * 2.5 * * * * 2.2 * * * * 1.9 * * * * Relative 1.6 * * * * Entropy 1.4 * * * * (13.5 bits) 1.1 * * * ** 0.8 *** * ** 0.5 ***** ** 0.3 ******** 0.0 -------- Multilevel CACTGAGA consensus A T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGWGM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:23338144-23338264 21 3.65e-06 ATCATAGTCC CACTGAGC CACATGACCT chr3L:5185540-5185660 34 7.20e-06 ACTGATCATT CACTGTGC ATATAAGTAG chr3L:25115921-25116041 80 7.20e-06 TTCTTGTTCA CACTGTGC CATAATAATG chr3R:20008834-20008954 77 1.25e-05 CCCTAGCAAT CGCTGAGC GATAACCATA chr4:210120-210240 9 1.25e-05 TTTACCAC CACAGAGC AGTTGCTCGA chr2R:5604846-5604966 73 2.59e-05 ATTCGATTGC CACTGAGA CTATTTAATA chr3L:1880823-1880943 2 2.59e-05 G CACTGAGA GAAAGCTATA chr2L:18548813-18548933 28 2.59e-05 ACGCCAACCA CACTGAGA AAAAATTCAC chr3L:17113334-17113454 2 2.59e-05 A CACTGAGA GCATCGATTT chrX:5852898-5853018 83 2.59e-05 ACAATTTTCT CGCTGTGC AGTGGTGGCT chr2R:21895001-21895121 34 2.59e-05 GGCTGGTATG CACTGAGA GAAATAGTTT chr3R:27621965-27622085 37 2.59e-05 CGCTTACAAG CACTGAGA AATAAGCCCA chr3L:3786981-3787101 100 3.39e-05 ACTGAGCGTT CACTGTGA TCGAATTCAC chrX:6152021-6152141 5 5.06e-05 GGTA CACAGAGA AAAAAGCATG chr3L:6220255-6220375 90 6.22e-05 TACTGACTTG CACAGTGA GGCAAGTCCA chr3L:8445092-8445212 38 6.22e-05 CCCTTCCTTA CACAGTGA GAAAAATAGC chr2L:10227023-10227143 20 6.22e-05 TATGGATAAT CGCTGTGA TCACCGATAT chr3L:16544369-16544489 32 6.22e-05 CATGCATGAG CACAGTGA GTAATTAATA chr2L:3755211-3755331 10 6.45e-05 GAGAAACTT CACAGGGC CCATAAGACA chr2R:12537606-12537726 3 7.59e-05 TC CGCAGGGC TTTCACAGCA chr3R:5055477-5055597 84 9.27e-05 CGGTGAATTT CCCAGTGC CACGTTTCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGWGM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:23338144-23338264 3.6e-06 20_[+2]_92 chr3L:5185540-5185660 7.2e-06 33_[+2]_79 chr3L:25115921-25116041 7.2e-06 79_[+2]_33 chr3R:20008834-20008954 1.3e-05 76_[+2]_36 chr4:210120-210240 1.3e-05 8_[+2]_104 chr2R:5604846-5604966 2.6e-05 72_[+2]_40 chr3L:1880823-1880943 2.6e-05 1_[+2]_111 chr2L:18548813-18548933 2.6e-05 27_[+2]_85 chr3L:17113334-17113454 2.6e-05 1_[+2]_111 chrX:5852898-5853018 2.6e-05 82_[+2]_30 chr2R:21895001-21895121 2.6e-05 33_[+2]_79 chr3R:27621965-27622085 2.6e-05 36_[+2]_76 chr3L:3786981-3787101 3.4e-05 99_[+2]_13 chrX:6152021-6152141 5.1e-05 4_[+2]_108 chr3L:6220255-6220375 6.2e-05 89_[+2]_23 chr3L:8445092-8445212 6.2e-05 37_[+2]_75 chr2L:10227023-10227143 6.2e-05 19_[+2]_93 chr3L:16544369-16544489 6.2e-05 31_[+2]_81 chr2L:3755211-3755331 6.5e-05 9_[+2]_103 chr2R:12537606-12537726 7.6e-05 2_[+2]_110 chr3R:5055477-5055597 9.3e-05 83_[+2]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGWGM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACWGWGM width=8 seqs=21 chr3L:23338144-23338264 ( 21) CACTGAGC 1 chr3L:5185540-5185660 ( 34) CACTGTGC 1 chr3L:25115921-25116041 ( 80) CACTGTGC 1 chr3R:20008834-20008954 ( 77) CGCTGAGC 1 chr4:210120-210240 ( 9) CACAGAGC 1 chr2R:5604846-5604966 ( 73) CACTGAGA 1 chr3L:1880823-1880943 ( 2) CACTGAGA 1 chr2L:18548813-18548933 ( 28) CACTGAGA 1 chr3L:17113334-17113454 ( 2) CACTGAGA 1 chrX:5852898-5853018 ( 83) CGCTGTGC 1 chr2R:21895001-21895121 ( 34) CACTGAGA 1 chr3R:27621965-27622085 ( 37) CACTGAGA 1 chr3L:3786981-3787101 ( 100) CACTGTGA 1 chrX:6152021-6152141 ( 5) CACAGAGA 1 chr3L:6220255-6220375 ( 90) CACAGTGA 1 chr3L:8445092-8445212 ( 38) CACAGTGA 1 chr2L:10227023-10227143 ( 20) CGCTGTGA 1 chr3L:16544369-16544489 ( 32) CACAGTGA 1 chr2L:3755211-3755331 ( 10) CACAGGGC 1 chr2R:12537606-12537726 ( 3) CGCAGGGC 1 chr3R:5055477-5055597 ( 84) CCCAGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGWGM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6976 E= 1.5e+003 -1104 268 -1104 -1104 112 -171 34 -1104 -1104 268 -1104 -1104 12 -1104 -1104 85 -1104 -1104 273 -1104 44 -1104 -66 32 -1104 -1104 273 -1104 70 146 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGWGM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.5e+003 0.000000 1.000000 0.000000 0.000000 0.761905 0.047619 0.190476 0.000000 0.000000 1.000000 0.000000 0.000000 0.380952 0.000000 0.000000 0.619048 0.000000 0.000000 1.000000 0.000000 0.476190 0.000000 0.095238 0.428571 0.000000 0.000000 1.000000 0.000000 0.571429 0.428571 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGWGM MEME-2 regular expression -------------------------------------------------------------------------------- CAC[TA]G[AT]G[AC] -------------------------------------------------------------------------------- Time 15.02 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTYGGCC MEME-3 width = 8 sites = 22 llr = 203 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTYGGCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::3 pos.-specific C :1:4::a7 probability G ::3:8a:: matrix T a9762::: bits 2.7 ** 2.5 ** 2.2 ** 1.9 ** Relative 1.6 * *** Entropy 1.4 * **** (13.3 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTTTGGCC consensus GCT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYGGCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16581811-16581931 97 3.46e-06 attaatcggt tttcggcc agataaagtg chr3L:6220255-6220375 56 1.26e-05 GATATCTGCA TTTTGGCC AAATACGAAG chr3R:4400348-4400468 109 1.26e-05 GCTGCTGCTG TTGCGGCC TCGT chr2L:18658354-18658474 90 1.26e-05 GAAAACTTTT TTTTGGCC AGCAGGCCAG chr2R:1345173-1345293 65 1.26e-05 TAAAATCTTC TTTTGGCC AAGCCGTGCT chr3R:17231626-17231746 60 1.26e-05 GATTTTAGCC TTTTGGCC CTAGAAAGAG chr3L:22864420-22864540 104 1.26e-05 CATGTTTTAT TTTTGGCC GTTTTGCGT chrX:5970226-5970346 97 1.26e-05 TTTCGCCACA TTGCGGCC ATTGAGTGTA chr3L:5280192-5280312 106 2.95e-05 GTGTAGAGTT TCTTGGCC ACCGCTT chr3R:13218993-13219113 111 2.95e-05 GCAAATAGTT TTTCGGCA GG chr4:1123635-1123755 3 2.95e-05 TA TCTTGGCC TGATATCGAC chrX:18899969-18900089 63 5.15e-05 ATATAGATTA TTTTGGCA TAGATGCTAT chr3L:5185540-5185660 78 5.15e-05 TTCTTTTGCT TTTTGGCA CCGTGAGAAA chrX:20434798-20434918 84 5.15e-05 AGTGTTCATA TTTTGGCA ACAACAAACG chr2L:3880282-3880402 59 5.15e-05 ATGTACATAT TTTTGGCA AAAGTAAACT chr2R:9078227-9078347 85 5.15e-05 GTGATCCATT TTGCGGCA TTGCACTTTA chr3R:23067651-23067771 109 6.69e-05 TTCCACACAT TTTCTGCC AGTG chr3R:27621965-27622085 13 6.69e-05 ATGCCACGTC TTGTGGCA CAGACACGCT chr2R:11178729-11178849 30 8.76e-05 ATCTATTTTT TTGCTGCC CACTTATGGA chrX:13320934-13321054 110 8.76e-05 TAATCCGTTA TTTTTGCC AGT chr3L:17113334-17113454 103 8.76e-05 TAAACCAGCT TTTTTGCC AGCACATTAA chrX:6179552-6179672 94 8.76e-05 TGTTTTTTTT TTGCTGCC AACTAACATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYGGCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16581811-16581931 3.5e-06 96_[+3]_16 chr3L:6220255-6220375 1.3e-05 55_[+3]_57 chr3R:4400348-4400468 1.3e-05 108_[+3]_4 chr2L:18658354-18658474 1.3e-05 89_[+3]_23 chr2R:1345173-1345293 1.3e-05 64_[+3]_48 chr3R:17231626-17231746 1.3e-05 59_[+3]_53 chr3L:22864420-22864540 1.3e-05 103_[+3]_9 chrX:5970226-5970346 1.3e-05 96_[+3]_16 chr3L:5280192-5280312 2.9e-05 105_[+3]_7 chr3R:13218993-13219113 2.9e-05 110_[+3]_2 chr4:1123635-1123755 2.9e-05 2_[+3]_110 chrX:18899969-18900089 5.2e-05 62_[+3]_50 chr3L:5185540-5185660 5.2e-05 77_[+3]_35 chrX:20434798-20434918 5.2e-05 83_[+3]_29 chr2L:3880282-3880402 5.2e-05 58_[+3]_54 chr2R:9078227-9078347 5.2e-05 84_[+3]_28 chr3R:23067651-23067771 6.7e-05 108_[+3]_4 chr3R:27621965-27622085 6.7e-05 12_[+3]_100 chr2R:11178729-11178849 8.8e-05 29_[+3]_83 chrX:13320934-13321054 8.8e-05 109_[+3]_3 chr3L:17113334-17113454 8.8e-05 102_[+3]_10 chrX:6179552-6179672 8.8e-05 93_[+3]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYGGCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTYGGCC width=8 seqs=22 chr2R:16581811-16581931 ( 97) TTTCGGCC 1 chr3L:6220255-6220375 ( 56) TTTTGGCC 1 chr3R:4400348-4400468 ( 109) TTGCGGCC 1 chr2L:18658354-18658474 ( 90) TTTTGGCC 1 chr2R:1345173-1345293 ( 65) TTTTGGCC 1 chr3R:17231626-17231746 ( 60) TTTTGGCC 1 chr3L:22864420-22864540 ( 104) TTTTGGCC 1 chrX:5970226-5970346 ( 97) TTGCGGCC 1 chr3L:5280192-5280312 ( 106) TCTTGGCC 1 chr3R:13218993-13219113 ( 111) TTTCGGCA 1 chr4:1123635-1123755 ( 3) TCTTGGCC 1 chrX:18899969-18900089 ( 63) TTTTGGCA 1 chr3L:5185540-5185660 ( 78) TTTTGGCA 1 chrX:20434798-20434918 ( 84) TTTTGGCA 1 chr2L:3880282-3880402 ( 59) TTTTGGCA 1 chr2R:9078227-9078347 ( 85) TTGCGGCA 1 chr3R:23067651-23067771 ( 109) TTTCTGCC 1 chr3R:27621965-27622085 ( 13) TTGTGGCA 1 chr2R:11178729-11178849 ( 30) TTGCTGCC 1 chrX:13320934-13321054 ( 110) TTTTTGCC 1 chr3L:17113334-17113454 ( 103) TTTTTGCC 1 chrX:6179552-6179672 ( 94) TTGCTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYGGCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6807 E= 1.0e+004 -1110 -1110 -1110 155 -1110 -78 -1110 141 -1110 -1110 86 109 -1110 122 -1110 89 -1110 -1110 236 -59 -1110 -1110 273 -1110 -1110 268 -1110 -1110 -14 213 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYGGCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.0e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.090909 0.000000 0.909091 0.000000 0.000000 0.272727 0.727273 0.000000 0.363636 0.000000 0.636364 0.000000 0.000000 0.772727 0.227273 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.318182 0.681818 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYGGCC MEME-3 regular expression -------------------------------------------------------------------------------- TT[TG][TC][GT]GC[CA] -------------------------------------------------------------------------------- Time 21.32 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCWGCTG MEME-4 width = 8 sites = 5 llr = 59 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCWGCTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::4:::: pos.-specific C 2:a::8:: probability G 8a::a2:a matrix T :::6::a: bits 2.7 ** * * 2.5 ** * * 2.2 ** * * 1.9 *** ** * Relative 1.6 *** **** Entropy 1.4 *** **** (16.9 bits) 1.1 *** **** 0.8 *** **** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCTGCTG consensus C A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGCTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21018435-21018555 110 1.48e-06 ATGTTATGTC GGCTGCTG TAG chrX:12539346-12539466 57 3.00e-06 ACAAACTTAA GGCAGCTG GCAAGGTCAC chr2L:10238898-10239018 18 3.00e-06 CGTTCACACA GGCAGCTG CTTCATCTGA chr3L:5604067-5604187 95 5.96e-06 CGGTGGTGTA GGCTGGTG TCTTGGAAGA chr3R:4400348-4400468 98 5.96e-06 TTAAATGTAA CGCTGCTG CTGTTGCGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGCTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21018435-21018555 1.5e-06 109_[+4]_3 chrX:12539346-12539466 3e-06 56_[+4]_56 chr2L:10238898-10239018 3e-06 17_[+4]_95 chr3L:5604067-5604187 6e-06 94_[+4]_18 chr3R:4400348-4400468 6e-06 97_[+4]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGCTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCWGCTG width=8 seqs=5 chr2R:21018435-21018555 ( 110) GGCTGCTG 1 chrX:12539346-12539466 ( 57) GGCAGCTG 1 chr2L:10238898-10239018 ( 18) GGCAGCTG 1 chr3L:5604067-5604187 ( 95) GGCTGGTG 1 chr3R:4400348-4400468 ( 98) CGCTGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGCTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 1.1e+004 -897 36 241 -897 -897 -897 273 -897 -897 268 -897 -897 19 -897 -897 81 -897 -897 273 -897 -897 236 41 -897 -897 -897 -897 154 -897 -897 273 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGCTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.1e+004 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGCTG MEME-4 regular expression -------------------------------------------------------------------------------- [GC]GC[TA]G[CG]TG -------------------------------------------------------------------------------- Time 27.57 secs. ******************************************************************************** ******************************************************************************** MOTIF GYTTCCGC MEME-5 width = 8 sites = 7 llr = 80 E-value = 1.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYTTCCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 361:aa:a probability G 7:::::a: matrix T :49a:::: bits 2.7 **** 2.5 **** 2.2 **** 1.9 * **** Relative 1.6 * ***** Entropy 1.4 * ***** (16.5 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCTTCCGC consensus CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTTCCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:4243111-4243231 96 1.58e-06 GTTCACACTG GCTTCCGC TTATAGATAG chrX:14669318-14669438 3 1.58e-06 AA GCTTCCGC TCGCAATGTT chr3R:15547891-15548011 17 3.93e-06 CTTTAGATAC CCTTCCGC GCTATGAAAC chr2R:23869482-23869602 112 3.93e-06 CCAAAGCTCC GCCTCCGC G chr4:359823-359943 43 7.39e-06 CTTATATACT GTTTCCGC TTTTGCGGTC chr3R:5065136-5065256 18 7.39e-06 CTTAATTTTT GTTTCCGC TTTGCGCCAT chr4:63476-63596 32 1.33e-05 TTATTACAAC CTTTCCGC ACTAAACTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTTCCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:4243111-4243231 1.6e-06 95_[+5]_17 chrX:14669318-14669438 1.6e-06 2_[+5]_110 chr3R:15547891-15548011 3.9e-06 16_[+5]_96 chr2R:23869482-23869602 3.9e-06 111_[+5]_1 chr4:359823-359943 7.4e-06 42_[+5]_70 chr3R:5065136-5065256 7.4e-06 17_[+5]_95 chr4:63476-63596 1.3e-05 31_[+5]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTTCCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYTTCCGC width=8 seqs=7 chr2R:4243111-4243231 ( 96) GCTTCCGC 1 chrX:14669318-14669438 ( 3) GCTTCCGC 1 chr3R:15547891-15548011 ( 17) CCTTCCGC 1 chr2R:23869482-23869602 ( 112) GCCTCCGC 1 chr4:359823-359943 ( 43) GTTTCCGC 1 chr3R:5065136-5065256 ( 18) GTTTCCGC 1 chr4:63476-63596 ( 32) CTTTCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTTCCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 1.3e+004 -945 87 224 -945 -945 187 -945 32 -945 -13 -945 132 -945 -945 -945 155 -945 268 -945 -945 -945 268 -945 -945 -945 -945 273 -945 -945 268 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTTCCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.3e+004 0.000000 0.285714 0.714286 0.000000 0.000000 0.571429 0.000000 0.428571 0.000000 0.142857 0.000000 0.857143 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTTCCGC MEME-5 regular expression -------------------------------------------------------------------------------- [GC][CT]TTCCGC -------------------------------------------------------------------------------- Time 33.79 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10238898-10239018 1.58e-04 17_[+4(3.00e-06)]_59_[+1(5.76e-05)]_\ 28 chr4:1123635-1123755 1.40e-02 2_[+3(2.95e-05)]_110 chr3L:19446820-19446940 8.83e-01 120 chr3R:13218993-13219113 4.89e-02 110_[+3(2.95e-05)]_2 chr2L:5778401-5778521 8.21e-01 120 chr3L:882419-882539 7.05e-01 120 chr2L:10314493-10314613 8.75e-01 120 chr2L:9400352-9400472 8.79e-01 120 chr3R:12080399-12080519 5.33e-01 120 chrX:12539346-12539466 1.36e-05 25_[+3(9.87e-05)]_23_[+4(3.00e-06)]_\ 56 chr3R:15119856-15119976 6.33e-01 120 chr3R:25855567-25855687 5.03e-02 120 chr3R:10132970-10133090 9.86e-01 120 chr3R:4400141-4400261 2.54e-01 120 chr3R:7080419-7080539 1.00e+00 120 chr3R:27621965-27622085 1.07e-03 12_[+3(6.69e-05)]_16_[+2(2.59e-05)]_\ 76 chr2L:10239125-10239245 7.73e-01 120 chr3L:21011437-21011557 6.91e-01 120 chr3R:19875735-19875855 4.64e-02 120 chr3L:2572140-2572260 5.03e-03 120 chr3L:26014121-26014241 5.94e-02 120 chr3L:19087969-19088089 2.61e-01 120 chr3R:19093379-19093499 9.17e-01 120 chr4:958517-958637 2.94e-01 120 chrX:6179552-6179672 1.90e-02 93_[+3(8.76e-05)]_19 chr3L:17652093-17652213 6.17e-02 120 chr3L:8094511-8094631 7.08e-01 120 chr2L:16548533-16548653 1.00e+00 120 chr2L:10314693-10314813 9.39e-01 120 chrX:278522-278642 4.80e-03 103_[+4(6.54e-05)]_9 chrX:6152021-6152141 1.83e-01 4_[+2(5.06e-05)]_108 chrX:7095034-7095154 6.95e-01 120 chr2R:21895001-21895121 1.69e-03 33_[+2(2.59e-05)]_79 chrX:5852898-5853018 2.70e-04 82_[+2(2.59e-05)]_6_[+4(6.54e-05)]_\ 16 chr3L:23338144-23338264 3.37e-02 20_[+2(3.65e-06)]_92 chr3L:23125821-23125941 6.74e-01 120 chr2L:3755211-3755331 6.51e-03 9_[+2(6.45e-05)]_103 chr4:570829-570949 1.57e-01 120 chr2R:9078227-9078347 2.00e-01 84_[+3(5.15e-05)]_28 chr3L:14359973-14360093 2.74e-01 120 chrX:9350466-9350586 3.80e-01 120 chr3L:2411036-2411156 7.18e-01 120 chr4:610532-610652 5.73e-01 120 chr3L:17603676-17603796 1.10e-01 120 chr3L:3496790-3496910 7.83e-01 120 chrX:3096401-3096521 4.40e-03 4_[+5(6.95e-05)]_108 chrX:8542814-8542934 9.14e-02 60_[+4(6.54e-05)]_52 chr2L:21263902-21264022 2.18e-01 120 chr4:179414-179534 7.90e-02 120 chr4:660640-660760 2.16e-01 120 chr3R:8811010-8811130 5.21e-01 120 chr2R:4671669-4671789 6.03e-01 120 chr2L:1048475-1048595 9.94e-01 120 chr4:788523-788643 4.89e-01 120 chr2L:5569706-5569826 5.85e-02 120 chr3L:16544369-16544489 2.31e-01 31_[+2(6.22e-05)]_81 chrX:5970226-5970346 7.70e-04 96_[+3(1.26e-05)]_16 chrX:14669318-14669438 1.03e-03 2_[+5(1.58e-06)]_110 chr3R:5055477-5055597 4.80e-03 83_[+2(9.27e-05)]_29 chrX:15890323-15890443 7.31e-01 120 chr3L:20732615-20732735 3.43e-01 120 chr3L:12734785-12734905 1.79e-01 120 chr3L:22864420-22864540 8.56e-04 103_[+3(1.26e-05)]_9 chr3R:24580484-24580604 8.62e-02 120 chr4:1196904-1197024 3.73e-01 120 chrX:843482-843602 1.31e-02 30_[+1(3.59e-06)]_82 chr3R:30083341-30083461 4.45e-01 120 chr3L:19326186-19326306 3.16e-01 120 chr3L:9333856-9333976 1.31e-01 120 chr4:1060929-1061049 9.99e-01 120 chr3R:17231626-17231746 9.41e-03 59_[+3(1.26e-05)]_53 chr4:63476-63596 2.34e-02 31_[+5(1.33e-05)]_81 chr3L:17113334-17113454 9.18e-03 1_[+2(2.59e-05)]_93_[+3(8.76e-05)]_\ 10 chr3R:22503765-22503885 3.80e-02 120 chr3L:16289252-16289372 4.29e-01 120 chr2R:10914933-10915053 2.00e-01 120 chr3R:8256205-8256325 2.02e-01 120 chr4:1181845-1181965 9.71e-01 120 chr2L:10373977-10374097 3.38e-05 84_[+1(8.90e-06)]_28 chr2R:22420663-22420783 3.93e-01 120 chr3R:21420103-21420223 8.73e-01 120 chr2L:8612855-8612975 3.59e-01 120 chr4:670979-671099 6.46e-01 120 chr3R:9938656-9938776 6.16e-01 120 chr3R:32052217-32052337 6.33e-01 120 chr3L:15923453-15923573 5.68e-01 120 chr3L:5183349-5183469 7.27e-01 120 chrX:19164887-19165007 1.77e-01 120 chr3L:14847455-14847575 1.65e-02 62_[+1(4.98e-06)]_50 chr2R:12537606-12537726 4.97e-02 2_[+2(7.59e-05)]_110 chr2R:1345173-1345293 1.70e-02 64_[+3(1.26e-05)]_48 chr2L:16498211-16498331 9.96e-01 120 chr3L:7862013-7862133 9.99e-01 120 chr2L:18548813-18548933 8.35e-03 10_[+1(8.74e-05)]_9_[+2(2.59e-05)]_\ 85 chr2L:22924590-22924710 4.91e-02 120 chr2L:18153208-18153328 8.47e-02 120 chr2R:4829093-4829213 4.89e-01 120 chr2R:24139176-24139296 9.04e-01 120 chrX:10601734-10601854 7.70e-02 120 chr4:210120-210240 3.38e-05 8_[+2(1.25e-05)]_34_[+2(8.42e-05)]_\ 2_[+1(7.51e-06)]_52 chr3L:22461397-22461517 2.82e-01 120 chr2L:22239756-22239876 3.89e-01 120 chr3L:16697138-16697258 4.02e-01 120 chr2R:23869482-23869602 1.23e-02 111_[+5(3.93e-06)]_1 chr2L:18658354-18658474 5.67e-03 89_[+3(1.26e-05)]_23 chr3L:10818397-10818517 2.80e-01 120 chr3R:21612998-21613118 9.03e-01 120 chr2R:5293872-5293992 3.77e-01 120 chr2L:10366531-10366651 4.17e-01 120 chr3R:23067651-23067771 2.81e-02 108_[+3(6.69e-05)]_4 chr2R:22529694-22529814 8.34e-01 120 chr2R:20327029-20327149 5.66e-01 120 chr4:444018-444138 4.86e-01 120 chr3L:13478734-13478854 1.71e-01 120 chr3L:11609638-11609758 1.29e-01 120 chrX:15803006-15803126 6.97e-04 72_[+1(2.29e-06)]_40 chr3R:26280507-26280627 7.19e-01 120 chr3L:5280192-5280312 1.53e-03 105_[+3(2.95e-05)]_7 chr4:904844-904964 6.47e-01 120 chr3L:25115921-25116041 7.46e-02 79_[+2(7.20e-06)]_33 chrX:5970491-5970611 9.66e-01 120 chr2R:4130768-4130888 7.12e-01 120 chrX:19453315-19453435 6.24e-01 120 chr3R:16213844-16213964 8.16e-01 120 chr2R:5363168-5363288 2.28e-01 120 chr2L:3880282-3880402 2.12e-01 58_[+3(5.15e-05)]_54 chr3R:15547891-15548011 4.79e-04 16_[+5(3.93e-06)]_96 chr3R:20829586-20829706 8.80e-01 120 chr3R:18167532-18167652 2.31e-01 120 chr3R:21188169-21188289 6.59e-01 120 chr3L:11291665-11291785 1.00e+00 120 chr3R:26333420-26333540 8.78e-01 120 chrX:12241203-12241323 4.51e-01 120 chr3L:16060963-16061083 2.58e-01 120 chr2R:11044582-11044702 2.16e-01 120 chr2L:1837857-1837977 3.27e-01 120 chr2L:8746405-8746525 6.81e-01 120 chr3L:1083444-1083564 6.73e-01 120 chr3R:11869872-11869992 1.33e-01 120 chr2L:20808330-20808450 1.00e+00 120 chr3L:23339134-23339254 5.90e-01 120 chrX:16580082-16580202 2.70e-01 120 chr3L:5554485-5554605 9.97e-01 120 chr2R:7879087-7879207 8.71e-01 120 chrX:13320934-13321054 2.73e-01 109_[+3(8.76e-05)]_3 chr3R:24817254-24817374 8.91e-01 120 chr4:1061148-1061268 8.93e-01 120 chr2R:11852404-11852524 5.14e-01 120 chrX:19964323-19964443 6.86e-01 120 chr2R:12218869-12218989 6.93e-01 120 chr3L:19338459-19338579 5.46e-02 120 chr2R:10160490-10160610 9.50e-01 120 chr3R:8577834-8577954 8.27e-01 120 chr3L:11450656-11450776 9.57e-01 120 chr2R:21662535-21662655 9.22e-01 120 chrX:3019727-3019847 3.70e-01 120 chr3R:28118248-28118368 8.29e-01 120 chr2L:10227023-10227143 2.60e-02 19_[+2(6.22e-05)]_93 chrX:14583310-14583430 8.22e-03 120 chr3R:20008834-20008954 1.47e-03 76_[+2(1.25e-05)]_36 chr3L:1880823-1880943 3.71e-02 1_[+2(2.59e-05)]_111 chr3R:28599614-28599734 7.17e-02 120 chr3L:797098-797218 7.91e-02 120 chr2L:9564649-9564769 3.18e-01 120 chr3L:15034561-15034681 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37_[+2(6.22e-05)]_75 chr4:359823-359943 5.18e-03 42_[+5(7.39e-06)]_70 chr3R:29251516-29251636 6.23e-01 120 chr3L:5185540-5185660 6.05e-05 33_[+2(7.20e-06)]_36_[+3(5.15e-05)]_\ 35 chr2L:12046703-12046823 6.33e-01 120 chrX:18899969-18900089 1.41e-01 62_[+3(5.15e-05)]_50 chr3R:15128972-15129092 9.93e-01 120 chr2R:13261826-13261946 9.67e-01 120 chr4:1030971-1031091 7.64e-01 120 chr2R:11178729-11178849 2.37e-03 29_[+3(8.76e-05)]_83 chrX:9120960-9121080 5.13e-01 120 chr3L:3786981-3787101 1.09e-01 99_[+2(3.39e-05)]_13 chr3L:14363164-14363284 9.05e-01 120 chr2L:19930229-19930349 9.76e-02 120 chr2L:15248688-15248808 5.89e-02 120 chr3L:6220255-6220375 1.07e-03 55_[+3(1.26e-05)]_26_[+2(6.22e-05)]_\ 23 chr2L:22169242-22169362 9.68e-01 120 chr4:663206-663326 2.73e-01 120 chr3R:19627921-19628041 9.98e-01 120 chr3R:16209142-16209262 9.67e-01 120 chr3R:22121359-22121479 9.77e-01 120 chr3R:4311403-4311523 8.33e-01 120 chr3L:5604067-5604187 1.31e-02 94_[+4(5.96e-06)]_18 chr2R:21018435-21018555 9.81e-04 109_[+4(1.48e-06)]_3 chr2R:17469323-17469443 4.96e-01 120 chr3L:13022987-13023107 9.01e-01 120 chr3R:14048992-14049112 1.26e-01 120 chr3L:3770959-3771079 2.49e-02 120 chr2L:16743105-16743225 1.30e-04 49_[+4(1.05e-05)]_12_[+1(1.60e-06)]_\ 43 chr2R:19127975-19128095 6.10e-01 120 chr3L:8629147-8629267 8.61e-03 120 chr2L:3805336-3805456 9.56e-01 120 chr3R:11872814-11872934 4.20e-01 120 chr3L:1216589-1216709 4.31e-01 120 chr3R:18438845-18438965 3.99e-01 120 chr3R:23722049-23722169 4.14e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************