******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Ets97D.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:31264054-31264174 1.0000 120 chr2R:21417178-21417298 1.0000 120 chrX:3504426-3504546 1.0000 120 chr3R:11208863-11208983 1.0000 120 chrX:2024932-2025052 1.0000 120 chr3L:20410939-20411059 1.0000 120 chr3R:13319991-13320111 1.0000 120 chr3R:11403024-11403144 1.0000 120 chr3L:5096773-5096893 1.0000 120 chr2L:9089702-9089822 1.0000 120 chr2L:18564534-18564654 1.0000 120 chr2L:5866918-5867038 1.0000 120 chrX:805974-806094 1.0000 120 chr3L:8932049-8932169 1.0000 120 chr3R:10053716-10053836 1.0000 120 chrX:12785156-12785276 1.0000 120 chrX:12645485-12645605 1.0000 120 chr2R:22912006-22912126 1.0000 120 chr3L:18947071-18947191 1.0000 120 chrX:19190053-19190173 1.0000 120 chr2R:16867292-16867412 1.0000 120 chr3L:7641637-7641757 1.0000 120 chr3L:9820391-9820511 1.0000 120 chrX:10462075-10462195 1.0000 120 chr2R:8051913-8052033 1.0000 120 chr2R:11145082-11145202 1.0000 120 chrX:2106498-2106618 1.0000 120 chr3R:31090128-31090248 1.0000 120 chr2R:22614285-22614405 1.0000 120 chrX:14234611-14234731 1.0000 120 chrX:18138487-18138607 1.0000 120 chr3L:12417552-12417672 1.0000 120 chrX:11087573-11087693 1.0000 120 chr2L:4478116-4478236 1.0000 120 chr3L:11720826-11720946 1.0000 120 chr2L:13158043-13158163 1.0000 120 chr3L:1859652-1859772 1.0000 120 chr2R:11812331-11812451 1.0000 120 chr2L:3748833-3748953 1.0000 120 chr2L:12707569-12707689 1.0000 120 chrX:7986693-7986813 1.0000 120 chr3R:14901550-14901670 1.0000 120 chr3L:11454586-11454706 1.0000 120 chr3R:20898766-20898886 1.0000 120 chr2L:17960362-17960482 1.0000 120 chr2R:19138064-19138184 1.0000 120 chr3R:23004313-23004433 1.0000 120 chr2L:8633826-8633946 1.0000 120 chrX:8780833-8780953 1.0000 120 chrX:18622078-18622198 1.0000 120 chrX:1460636-1460756 1.0000 120 chrX:11388839-11388959 1.0000 120 chr2L:18934695-18934815 1.0000 120 chrX:19579829-19579949 1.0000 120 chr3L:329259-329379 1.0000 120 chr2R:13957036-13957156 1.0000 120 chrX:13338296-13338416 1.0000 120 chr3R:23297226-23297346 1.0000 120 chr2R:20888903-20889023 1.0000 120 chr2R:19125797-19125917 1.0000 120 chrX:11993435-11993555 1.0000 120 chr2L:11221562-11221682 1.0000 120 chrX:2383266-2383386 1.0000 120 chr3L:23099551-23099671 1.0000 120 chr3R:23088399-23088519 1.0000 120 chr3R:26956507-26956627 1.0000 120 chr3R:11338410-11338530 1.0000 120 chrX:17842039-17842159 1.0000 120 chr2L:19458025-19458145 1.0000 120 chr2L:12076086-12076206 1.0000 120 chr3R:25045121-25045241 1.0000 120 chr3R:28886911-28887031 1.0000 120 chr2L:2967030-2967150 1.0000 120 chr3L:21192111-21192231 1.0000 120 chr3R:5696509-5696629 1.0000 120 chrX:12947810-12947930 1.0000 120 chr3L:15637152-15637272 1.0000 120 chr2R:16230663-16230783 1.0000 120 chrX:17968234-17968354 1.0000 120 chr3L:34817-34937 1.0000 120 chr2L:17433382-17433502 1.0000 120 chr3L:3466342-3466462 1.0000 120 chr2L:19079890-19080010 1.0000 120 chr3L:6784743-6784863 1.0000 120 chr2R:13623533-13623653 1.0000 120 chr3R:30934009-30934129 1.0000 120 chrX:2140652-2140772 1.0000 120 chr3L:8968492-8968612 1.0000 120 chr3R:15346082-15346202 1.0000 120 chrX:13089622-13089742 1.0000 120 chr2L:4019895-4020015 1.0000 120 chr2R:14141319-14141439 1.0000 120 chrX:2258723-2258843 1.0000 120 chr2R:14141118-14141238 1.0000 120 chr2L:8111161-8111281 1.0000 120 chrX:5332416-5332536 1.0000 120 chr2R:23754295-23754415 1.0000 120 chrX:11579003-11579123 1.0000 120 chrX:7676979-7677099 1.0000 120 chrX:17865202-17865322 1.0000 120 chr2L:9850928-9851048 1.0000 120 chr2L:4227666-4227786 1.0000 120 chr2L:7182082-7182202 1.0000 120 chr3L:16139247-16139367 1.0000 120 chr3R:16643625-16643745 1.0000 120 chr3R:5438893-5439013 1.0000 120 chr2R:14661092-14661212 1.0000 120 chr3R:9008369-9008489 1.0000 120 chr2L:4387054-4387174 1.0000 120 chrX:5317314-5317434 1.0000 120 chr3L:13005162-13005282 1.0000 120 chr3L:20800312-20800432 1.0000 120 chr2R:10395819-10395939 1.0000 120 chr3R:9543613-9543733 1.0000 120 chr2R:10075612-10075732 1.0000 120 chr3R:7281558-7281678 1.0000 120 chr3L:2828724-2828844 1.0000 120 chr2L:2969602-2969722 1.0000 120 chrX:15849183-15849303 1.0000 120 chr3R:26056527-26056647 1.0000 120 chrX:635699-635819 1.0000 120 chrX:8094030-8094150 1.0000 120 chrX:10463168-10463288 1.0000 120 chr3R:25687079-25687199 1.0000 120 chr3R:10001281-10001401 1.0000 120 chr2L:15249145-15249265 1.0000 120 chr2R:9400253-9400373 1.0000 120 chr3R:18385744-18385864 1.0000 120 chr3L:14262901-14263021 1.0000 120 chr3R:25982855-25982975 1.0000 120 chr2L:4345078-4345198 1.0000 120 chr2L:6092404-6092524 1.0000 120 chr3L:19815878-19815998 1.0000 120 chrX:18830489-18830609 1.0000 120 chrX:12615921-12616041 1.0000 120 chr3L:22074430-22074550 1.0000 120 chr3R:18267789-18267909 1.0000 120 chr2R:13506291-13506411 1.0000 120 chr3L:7640381-7640501 1.0000 120 chr2L:21104470-21104590 1.0000 120 chrX:11797053-11797173 1.0000 120 chr3R:11721076-11721196 1.0000 120 chr3L:4367452-4367572 1.0000 120 chrX:22480653-22480773 1.0000 120 chr2L:1732425-1732545 1.0000 120 chrX:19762342-19762462 1.0000 120 chr3R:13063874-13063994 1.0000 120 chrX:2275052-2275172 1.0000 120 chr3R:27954079-27954199 1.0000 120 chrX:9502421-9502541 1.0000 120 chr3R:22094088-22094208 1.0000 120 chr3R:4359719-4359839 1.0000 120 chr4:1084784-1084904 1.0000 120 chr3R:25893425-25893545 1.0000 120 chr3R:5794410-5794530 1.0000 120 chrX:5754935-5755055 1.0000 120 chrX:9600934-9601054 1.0000 120 chrX:14841979-14842099 1.0000 120 chr3R:21263274-21263394 1.0000 120 chr3L:20769506-20769626 1.0000 120 chrX:16321186-16321306 1.0000 120 chrX:11124768-11124888 1.0000 120 chrX:15328282-15328402 1.0000 120 chr2R:20262822-20262942 1.0000 120 chrX:6674315-6674435 1.0000 120 chr3R:7892419-7892539 1.0000 120 chr3R:13802316-13802436 1.0000 120 chrX:16803346-16803466 1.0000 120 chr3R:21179772-21179892 1.0000 120 chr3L:329466-329586 1.0000 120 chrX:16786984-16787104 1.0000 120 chr2R:11219255-11219375 1.0000 120 chr2L:8126950-8127070 1.0000 120 chrX:4104222-4104342 1.0000 120 chr3L:3905273-3905393 1.0000 120 chr2R:9291683-9291803 1.0000 120 chrX:17856631-17856751 1.0000 120 chr2R:12686135-12686255 1.0000 120 chr3L:20792852-20792972 1.0000 120 chr3L:1748429-1748549 1.0000 120 chr3L:8121739-8121859 1.0000 120 chr3R:22035609-22035729 1.0000 120 chr3R:31086484-31086604 1.0000 120 chrX:23007604-23007724 1.0000 120 chrX:13736232-13736352 1.0000 120 chr3L:18088186-18088306 1.0000 120 chr2R:18128351-18128471 1.0000 120 chr2L:18682002-18682122 1.0000 120 chr3R:9003916-9004036 1.0000 120 chr3R:16651089-16651209 1.0000 120 chr3L:8986658-8986778 1.0000 120 chrX:7679000-7679120 1.0000 120 chr4:834972-835092 1.0000 120 chr3L:7243878-7243998 1.0000 120 chr2L:22538179-22538299 1.0000 120 chrX:1695880-1696000 1.0000 120 chr2R:20287058-20287178 1.0000 120 chr3R:15485939-15486059 1.0000 120 chr3L:8175930-8176050 1.0000 120 chr3R:17733477-17733597 1.0000 120 chr2L:13793443-13793563 1.0000 120 chr3R:20816130-20816250 1.0000 120 chr2R:23357390-23357510 1.0000 120 chr4:1231782-1231902 1.0000 120 chrX:3173182-3173302 1.0000 120 chr2L:2383063-2383183 1.0000 120 chrX:8177131-8177251 1.0000 120 chr3L:1576524-1576644 1.0000 120 chr3R:21130130-21130250 1.0000 120 chr3R:21214700-21214820 1.0000 120 chr2L:10004721-10004841 1.0000 120 chr2L:6833931-6834051 1.0000 120 chr3L:174607-174727 1.0000 120 chrX:9089382-9089502 1.0000 120 chr2L:6622749-6622869 1.0000 120 chrX:15482314-15482434 1.0000 120 chrX:20165898-20166018 1.0000 120 chr2L:9330662-9330782 1.0000 120 chr3R:25476908-25477028 1.0000 120 chr3L:3225461-3225581 1.0000 120 chrX:8251761-8251881 1.0000 120 chr3R:24360064-24360184 1.0000 120 chr3R:23933820-23933940 1.0000 120 chr3L:648346-648466 1.0000 120 chr3R:20621826-20621946 1.0000 120 chrX:15785542-15785662 1.0000 120 chr3R:16640054-16640174 1.0000 120 chr3R:16305257-16305377 1.0000 120 chr2R:10821573-10821693 1.0000 120 chr2R:17581484-17581604 1.0000 120 chr3L:328019-328139 1.0000 120 chr2R:24187529-24187649 1.0000 120 chrX:16073501-16073621 1.0000 120 chr3R:25221504-25221624 1.0000 120 chr3L:21131503-21131623 1.0000 120 chrX:17305667-17305787 1.0000 120 chr3R:26964906-26965026 1.0000 120 chr3L:5749777-5749897 1.0000 120 chr3R:20309026-20309146 1.0000 120 chrX:16448505-16448625 1.0000 120 chr3R:11750059-11750179 1.0000 120 chrX:2585858-2585978 1.0000 120 chr2L:12093664-12093784 1.0000 120 chr3L:5662201-5662321 1.0000 120 chr2R:9060128-9060248 1.0000 120 chrX:11359122-11359242 1.0000 120 chrX:10385818-10385938 1.0000 120 chr3R:25245531-25245651 1.0000 120 chr3L:10734644-10734764 1.0000 120 chr3L:19642739-19642859 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Ets97D/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Ets97D.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.285 C 0.223 G 0.219 T 0.273 Background letter frequencies (from file dataset with add-one prior applied): A 0.285 C 0.223 G 0.219 T 0.273 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-1 width = 8 sites = 55 llr = 500 E-value = 3.4e-031 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1a:::a18 pos.-specific C 1::a:::: probability G ::::a::1 matrix T 8:a:::91 bits 2.2 ** 2.0 *** 1.8 ***** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ******* (13.1 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10385818-10385938 83 2.30e-05 CCCATCGGAC TATCGATA AAGTCGAACT chr3L:5662201-5662321 30 2.30e-05 CTTCGGACGA TATCGATA GATGCCTTGT chr3R:25221504-25221624 20 2.30e-05 TCTACACATA TATCGATA ACAAATCTGA chrX:16073501-16073621 44 2.30e-05 TGCGCTTGGC TATCGATA TGGACCTAAG chr3L:328019-328139 14 2.30e-05 GAAGAATAGG TATCGATA ATCTCTACAT chr2R:10821573-10821693 40 2.30e-05 TGCTGCATTA TATCGATA TGTTTAAAAA chr3L:648346-648466 51 2.30e-05 AAGTTGTTCA TATCGATA GACAGCCAAG chr3R:25476908-25477028 18 2.30e-05 CGATTAAGGC TATCGATA TATAGCGCTT chrX:15482314-15482434 8 2.30e-05 GAAATTC TATCGATA CTTCGAAGCG chrX:9089382-9089502 109 2.30e-05 AGCCGCGCGT TATCGATA ACAG chr3L:174607-174727 83 2.30e-05 GCTTAGTATG TATCGATA GTAATCGATA chr4:1231782-1231902 73 2.30e-05 CCATCGAAGT TATCGATA GTTCCATCGA chr3R:20816130-20816250 81 2.30e-05 CATCAGTTTT TATCGATA GCCGCGGTGG chrX:1695880-1696000 82 2.30e-05 TGTCGGTAGT TATCGATA ATGCATTCGC chr3R:16651089-16651209 78 2.30e-05 TCCCTGAGTC TATCGATA GTTTTCCCAG chr3R:9003916-9004036 101 2.30e-05 AAACTTGTGA TATCGATA TTAAATGGAG chr3R:22035609-22035729 93 2.30e-05 AATTGGCAAT TATCGATA GGCACAGCTG chr3L:8121739-8121859 19 2.30e-05 TAAGTAGAGT TATCGATA AGAGCGTCCA chr2R:12686135-12686255 81 2.30e-05 ACCGAAGGTG TATCGATA AAACGATAGT chr2R:20262822-20262942 81 2.30e-05 CGACTGAATC TATCGATA GCAGCCAGCG chrX:15328282-15328402 8 2.30e-05 GAAGTGA TATCGATA ACACGCGCGG chrX:9600934-9601054 107 2.30e-05 CTCGCCAAAC TATCGATA GTGTCG chrX:18830489-18830609 113 2.30e-05 CGCCTTCCGA TATCGATA chr3R:25982855-25982975 96 2.30e-05 ATAAGCGATA TATCGATA GGATGTAATT chr3R:26056527-26056647 107 2.30e-05 GTCTAACCGT TATCGATA TCACAA chr3L:16139247-16139367 86 2.30e-05 TGCAATTGGT TATCGATA ACTTCAGTTT chr3R:15346082-15346202 87 2.30e-05 ATCGCTGCGT TATCGATA GCCAATGGGC chrX:11993435-11993555 41 2.30e-05 tagatatcga tatcgata tagatatcga chr2L:12707569-12707689 78 2.30e-05 CACACATTCC TATCGATA GCGATAAAAA chr3L:12417552-12417672 62 2.30e-05 TTGGGCATAC TATCGATA TTTACCCATC chr3R:16640054-16640174 85 4.50e-05 CCATCAACAT TATCGATT AATGTAACTA chr2R:18128351-18128471 56 4.50e-05 CGTGGTCTGT TATCGATT CGATATCGAA chrX:5754935-5755055 88 4.50e-05 TATCGAATAC TATCGATT TACCGCCAAG chr3R:27954079-27954199 79 4.50e-05 TTTGGTGGTC TATCGATT GTATTTTTTT chr3R:25687079-25687199 69 4.50e-05 GCGACAGCAC TATCGATT TCAGCGATTG chrX:2106498-2106618 26 4.50e-05 GTTGGGATGC TATCGATT TGGTGCAAGC chrX:11359122-11359242 54 6.90e-05 TAAGCCCGAA AATCGATA GCAACGAACG chrX:16448505-16448625 6 6.90e-05 ATATT AATCGATA TCTGAAAATT chrX:13736232-13736352 37 6.90e-05 ATTTGTGTTT AATCGATA CTATCGATGT chrX:23007604-23007724 11 6.90e-05 TATTTTTCTA AATCGATA GCATTCCAGC chrX:2275052-2275172 45 6.90e-05 GGGCGATAGC AATCGATA AAACAATCGA chr2L:8126950-8127070 30 8.67e-05 ATTTTTAACT TATCGATG TTGCTTTACA chr4:1084784-1084904 113 8.67e-05 TTAGAAAGAA TATCGATG chr2L:2969602-2969722 82 8.67e-05 CGATTACATT TATCGATG TCGACCGGTT chrX:15785542-15785662 82 1.30e-04 TGGGATACGT TATCGAAA ACGTTACACG chrX:20165898-20166018 34 1.30e-04 TGGGACGATA CATCGATA GATTCGAGAA chrX:16786984-16787104 108 1.30e-04 TACGATACGT TATCGAAA ACGTT chrX:16803346-16803466 105 1.30e-04 AGGCGATTAG TATCGAAA GCTAAATT chrX:17842039-17842159 96 1.30e-04 TAGACGTCTG CATCGATA GTATCGCATA chr3L:329259-329379 87 1.30e-04 AATTCGATAT CATCGATA GGTGTTTCCC chrX:1460636-1460756 42 1.30e-04 AGTCGAAAGA TATCGAAA ACAGTGCTGC chrX:19762342-19762462 13 1.48e-04 AGCGCGGACC TATCGATC GACAGCTCGT chr2L:4387054-4387174 28 1.48e-04 ACCTGTCCGC TATCGATC TCAATGCTAT chr4:834972-835092 64 1.71e-04 ATTACAATCA AATCGATT ATTCATTTAT chrX:10463168-10463288 2 1.71e-04 T AATCGATT AACTAATTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10385818-10385938 2.3e-05 82_[+1]_30 chr3L:5662201-5662321 2.3e-05 29_[+1]_83 chr3R:25221504-25221624 2.3e-05 19_[+1]_93 chrX:16073501-16073621 2.3e-05 43_[+1]_69 chr3L:328019-328139 2.3e-05 13_[+1]_99 chr2R:10821573-10821693 2.3e-05 39_[+1]_73 chr3L:648346-648466 2.3e-05 50_[+1]_62 chr3R:25476908-25477028 2.3e-05 17_[+1]_95 chrX:15482314-15482434 2.3e-05 7_[+1]_105 chrX:9089382-9089502 2.3e-05 108_[+1]_4 chr3L:174607-174727 2.3e-05 82_[+1]_30 chr4:1231782-1231902 2.3e-05 72_[+1]_40 chr3R:20816130-20816250 2.3e-05 80_[+1]_32 chrX:1695880-1696000 2.3e-05 81_[+1]_31 chr3R:16651089-16651209 2.3e-05 77_[+1]_35 chr3R:9003916-9004036 2.3e-05 100_[+1]_12 chr3R:22035609-22035729 2.3e-05 92_[+1]_20 chr3L:8121739-8121859 2.3e-05 18_[+1]_94 chr2R:12686135-12686255 2.3e-05 80_[+1]_32 chr2R:20262822-20262942 2.3e-05 80_[+1]_32 chrX:15328282-15328402 2.3e-05 7_[+1]_105 chrX:9600934-9601054 2.3e-05 106_[+1]_6 chrX:18830489-18830609 2.3e-05 112_[+1] chr3R:25982855-25982975 2.3e-05 95_[+1]_17 chr3R:26056527-26056647 2.3e-05 106_[+1]_6 chr3L:16139247-16139367 2.3e-05 85_[+1]_27 chr3R:15346082-15346202 2.3e-05 86_[+1]_26 chrX:11993435-11993555 2.3e-05 40_[+1]_72 chr2L:12707569-12707689 2.3e-05 77_[+1]_35 chr3L:12417552-12417672 2.3e-05 61_[+1]_51 chr3R:16640054-16640174 4.5e-05 84_[+1]_28 chr2R:18128351-18128471 4.5e-05 55_[+1]_57 chrX:5754935-5755055 4.5e-05 87_[+1]_25 chr3R:27954079-27954199 4.5e-05 78_[+1]_34 chr3R:25687079-25687199 4.5e-05 68_[+1]_44 chrX:2106498-2106618 4.5e-05 25_[+1]_87 chrX:11359122-11359242 6.9e-05 53_[+1]_59 chrX:16448505-16448625 6.9e-05 5_[+1]_107 chrX:13736232-13736352 6.9e-05 36_[+1]_76 chrX:23007604-23007724 6.9e-05 10_[+1]_102 chrX:2275052-2275172 6.9e-05 44_[+1]_68 chr2L:8126950-8127070 8.7e-05 29_[+1]_83 chr4:1084784-1084904 8.7e-05 112_[+1] chr2L:2969602-2969722 8.7e-05 81_[+1]_31 chrX:15785542-15785662 0.00013 81_[+1]_31 chrX:20165898-20166018 0.00013 33_[+1]_79 chrX:16786984-16787104 0.00013 107_[+1]_5 chrX:16803346-16803466 0.00013 104_[+1]_8 chrX:17842039-17842159 0.00013 95_[+1]_17 chr3L:329259-329379 0.00013 86_[+1]_26 chrX:1460636-1460756 0.00013 41_[+1]_71 chrX:19762342-19762462 0.00015 12_[+1]_100 chr2L:4387054-4387174 0.00015 27_[+1]_85 chr4:834972-835092 0.00017 63_[+1]_49 chrX:10463168-10463288 0.00017 1_[+1]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=55 chrX:10385818-10385938 ( 83) TATCGATA 1 chr3L:5662201-5662321 ( 30) TATCGATA 1 chr3R:25221504-25221624 ( 20) TATCGATA 1 chrX:16073501-16073621 ( 44) TATCGATA 1 chr3L:328019-328139 ( 14) TATCGATA 1 chr2R:10821573-10821693 ( 40) TATCGATA 1 chr3L:648346-648466 ( 51) TATCGATA 1 chr3R:25476908-25477028 ( 18) TATCGATA 1 chrX:15482314-15482434 ( 8) TATCGATA 1 chrX:9089382-9089502 ( 109) TATCGATA 1 chr3L:174607-174727 ( 83) TATCGATA 1 chr4:1231782-1231902 ( 73) TATCGATA 1 chr3R:20816130-20816250 ( 81) TATCGATA 1 chrX:1695880-1696000 ( 82) TATCGATA 1 chr3R:16651089-16651209 ( 78) TATCGATA 1 chr3R:9003916-9004036 ( 101) TATCGATA 1 chr3R:22035609-22035729 ( 93) TATCGATA 1 chr3L:8121739-8121859 ( 19) TATCGATA 1 chr2R:12686135-12686255 ( 81) TATCGATA 1 chr2R:20262822-20262942 ( 81) TATCGATA 1 chrX:15328282-15328402 ( 8) TATCGATA 1 chrX:9600934-9601054 ( 107) TATCGATA 1 chrX:18830489-18830609 ( 113) TATCGATA 1 chr3R:25982855-25982975 ( 96) TATCGATA 1 chr3R:26056527-26056647 ( 107) TATCGATA 1 chr3L:16139247-16139367 ( 86) TATCGATA 1 chr3R:15346082-15346202 ( 87) TATCGATA 1 chrX:11993435-11993555 ( 41) TATCGATA 1 chr2L:12707569-12707689 ( 78) TATCGATA 1 chr3L:12417552-12417672 ( 62) TATCGATA 1 chr3R:16640054-16640174 ( 85) TATCGATT 1 chr2R:18128351-18128471 ( 56) TATCGATT 1 chrX:5754935-5755055 ( 88) TATCGATT 1 chr3R:27954079-27954199 ( 79) TATCGATT 1 chr3R:25687079-25687199 ( 69) TATCGATT 1 chrX:2106498-2106618 ( 26) TATCGATT 1 chrX:11359122-11359242 ( 54) AATCGATA 1 chrX:16448505-16448625 ( 6) AATCGATA 1 chrX:13736232-13736352 ( 37) AATCGATA 1 chrX:23007604-23007724 ( 11) AATCGATA 1 chrX:2275052-2275172 ( 45) AATCGATA 1 chr2L:8126950-8127070 ( 30) TATCGATG 1 chr4:1084784-1084904 ( 113) TATCGATG 1 chr2L:2969602-2969722 ( 82) TATCGATG 1 chrX:15785542-15785662 ( 82) TATCGAAA 1 chrX:20165898-20166018 ( 34) CATCGATA 1 chrX:16786984-16787104 ( 108) TATCGAAA 1 chrX:16803346-16803466 ( 105) TATCGAAA 1 chrX:17842039-17842159 ( 96) CATCGATA 1 chr3L:329259-329379 ( 87) CATCGATA 1 chrX:1460636-1460756 ( 42) TATCGAAA 1 chrX:19762342-19762462 ( 13) TATCGATC 1 chr2L:4387054-4387174 ( 28) TATCGATC 1 chr4:834972-835092 ( 64) AATCGATT 1 chrX:10463168-10463288 ( 2) AATCGATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.59032 E= 3.4e-031 -116 -203 -1243 158 181 -1243 -1243 -1243 -1243 -1243 -1243 187 -1243 217 -1243 -1243 -1243 -1243 219 -1243 181 -1243 -1243 -1243 -197 -1243 -1243 176 142 -261 -201 -91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 3.4e-031 0.127273 0.054545 0.000000 0.818182 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.072727 0.000000 0.000000 0.927273 0.763636 0.036364 0.054545 0.145455 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 regular expression -------------------------------------------------------------------------------- TATCGATA -------------------------------------------------------------------------------- Time 7.64 secs. ******************************************************************************** ******************************************************************************** MOTIF AAVCGGAA MEME-2 width = 8 sites = 75 llr = 618 E-value = 1.5e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAVCGGAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 893::1aa pos.-specific C 1:49:::: probability G 112:a9:: matrix T :::::::: bits 2.2 * 2.0 * 1.8 ** ** 1.5 ***** Relative 1.3 * ***** Entropy 1.1 ** ***** (11.9 bits) 0.9 ** ***** 0.7 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AACCGGAA consensus A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAVCGGAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:13802316-13802436 52 1.57e-05 AGGGCTACGA AACCGGAA GTGAATTCCT chr2L:1732425-1732545 22 1.57e-05 TTTGGCGCCA AACCGGAA GCAACAGAGA chr3R:11721076-11721196 53 1.57e-05 CATAAACGGT AACCGGAA ATGAAAACAT chrX:13089622-13089742 28 1.57e-05 GATGGAACGG AACCGGAA ACGACAGGGC chr2L:12076086-12076206 57 1.57e-05 GGAAAACGGA AACCGGAA GCAAGAAGAA chr3R:11338410-11338530 32 1.57e-05 ACAACCAAAT AACCGGAA ATGCTCTGAA chr2L:11221562-11221682 60 1.57e-05 TGTTCGCAAT AACCGGAA ACGGAAATCA chr2R:19138064-19138184 25 1.57e-05 AAAATTTGCA AACCGGAA ACAATTTCCT chr2L:17960362-17960482 48 1.57e-05 GGCAAAACGG AACCGGAA ATGCCGCCGC chr2R:11812331-11812451 27 1.57e-05 ACATAAGCGA AACCGGAA GCGGAAGCCG chr2R:22614285-22614405 88 1.57e-05 AGCAAACGGA AACCGGAA ACGGAAGTGA chr2R:22912006-22912126 16 1.57e-05 CCCAAGAGTG AACCGGAA CCCAAAAGTG chr3R:13319991-13320111 74 1.57e-05 GAAATAGCGG AACCGGAA ATACCTAACG chr3L:20410939-20411059 80 1.57e-05 TGTGAGCCAA AACCGGAA ACTAAATAAG chrX:3504426-3504546 3 1.57e-05 GG AACCGGAA ATCGGATAGA chr3L:10734644-10734764 40 3.58e-05 GCATGAGCGG AAACGGAA GTGAGCAGCG chr2L:6833931-6834051 55 3.58e-05 GGAAAGCCGA AAACGGAA CGGAACTGAA chr3L:18088186-18088306 105 3.58e-05 AATCCAGTTC AAACGGAA ATTAGTAA chr3L:19815878-19815998 7 3.58e-05 CATTTA AAACGGAA GTTTGTGCAG chr2L:4345078-4345198 63 3.58e-05 TGTAAAGCGG AAACGGAA ACAGAAATCA chr3R:7281558-7281678 47 3.58e-05 GTACCACcgg aaacggaa acagagacgg chr2R:23754295-23754415 74 3.58e-05 tgcggtaacg aaacggaa gcgAGGAAGA chr3L:8968492-8968612 89 3.58e-05 AGTCGGTCGG AAACGGAA TCGAAAAGAA chr3R:30934009-30934129 51 3.58e-05 AGGGCAGAGG AAACGGAA GAGGGTGTGT chrX:17968234-17968354 16 3.58e-05 AATGCAGCGG AAACGGAA CACGGTCAAC chr3L:21192111-21192231 37 3.58e-05 CTGCGACAGG AAACGGAA GTTGAGCACG chr2L:2967030-2967150 34 3.58e-05 ACGCCACCGG AAACGGAA ACGTCTGCAG chr2R:19125797-19125917 30 3.58e-05 AAACAATGGG AAACGGAA ATGAAATCGG chr2L:18934695-18934815 62 3.58e-05 ACGGGAACGG AAACGGAA GAGGGCCAGA chr2L:4478116-4478236 38 3.58e-05 CGGGCGCCGG AAACGGAA ATTCGCTGCA chrX:12645485-12645605 113 3.58e-05 TTGATTTTTG AAACGGAA chr2L:18564534-18564654 38 3.58e-05 GTGAGAACGG AAACGGAA ATGAAGGCTC chrX:2024932-2025052 69 3.58e-05 GAGTGAGCGG AAACGGAA GTAGTCTAAT chr3R:13063874-13063994 22 5.13e-05 GAATTTTGAC AAGCGGAA GTGCCCAATG chrX:11797053-11797173 7 5.13e-05 ACGGAC AAGCGGAA AGCAAAACAA chr3L:14262901-14263021 54 5.13e-05 TTTCCGGCGG AAGCGGAA GTGTGTTTAT chr3L:13005162-13005282 37 5.13e-05 ACAACGCGCA AAGCGGAA ACAAAACGCA chr2L:8111161-8111281 73 5.13e-05 AGCAAGGCGG AAGCGGAA GTAACAGCAG chr3L:1859652-1859772 50 5.13e-05 TTTTACCAGG AAGCGGAA ATGAGCCTTG chr2L:5866918-5867038 53 5.13e-05 AGCGGACAGG AAGCGGAA ACGGCGACAT chr3L:5096773-5096893 59 5.13e-05 GTTTTTTTAT AAGCGGAA ACGGATATCG chr2R:9060128-9060248 17 7.57e-05 ACAAAACAGA AGCCGGAA ACGAAAGCGA chr3R:21263274-21263394 54 7.57e-05 GGGCGGCCAT CACCGGAA GTCGAAAAAA chrX:2140652-2140772 22 7.57e-05 ATGGGCGCAC CACCGGAA AAGGTTTTTT chr3L:11454586-11454706 14 7.57e-05 TTGCCCCATC AGCCGGAA ATGGGCGCGC chr2L:3748833-3748953 12 7.57e-05 AGCTTGACGG CACCGGAA GTCGCTTATC chrX:12785156-12785276 99 7.57e-05 AGAAACACAG CACCGGAA ATAACGTTAG chrX:19762342-19762462 82 1.07e-04 GCAAAACGCC CAACGGAA TTTAAATATT chr3L:9820391-9820511 62 1.07e-04 GGCTGCCCTA CAACGGAA GCTGGTGCAC chrX:12615921-12616041 58 1.31e-04 GCTAACGGGA CAGCGGAA GTCGGTGAGC chrX:2258723-2258843 8 1.31e-04 TCTCCTG CAGCGGAA TGACTGTGAA chr2L:17433382-17433502 62 1.31e-04 CAAAATGAGA AGGCGGAA GCCGCTACCG chr3R:5696509-5696629 52 1.31e-04 AATGAGTAGG AGGCGGAA ATGCGCCGGG chr2R:20888903-20889023 48 1.31e-04 AAGCAGAGCG AGGCGGAA GCAAGAGGAA chr2L:8633826-8633946 92 1.31e-04 ATCGCGACAA AGGCGGAA ATAAAATTGC chrX:12947810-12947930 16 1.43e-04 TCAGCAAATA GACCGGAA GTCCTCGAAA chr2R:21417178-21417298 66 1.43e-04 TTAAAGCTCT GACCGGAA ATTAAAAATA chr3L:6784743-6784863 96 1.63e-04 TTCCTATAAG AACCGAAA ACACTAAGAA chr3R:31090128-31090248 111 1.63e-04 ATGGTCATTA AACCGAAA TA chrX:7676979-7677099 54 1.88e-04 AAAAAACGTC CGCCGGAA GCTCCAACCC chr2R:11145082-11145202 51 1.88e-04 GCCACATTTC CGCCGGAA GTATAAGATA chr2L:6092404-6092524 23 2.16e-04 GCAGGATGGC AACGGGAA ATGCCGGTTG chr3L:34817-34937 108 2.16e-04 CTTTGACATA AACGGGAA ACGGA chr3L:20769506-20769626 74 2.62e-04 AAAACTTAGG AAACGAAA ACAATCCCGT chr2L:4227666-4227786 112 2.62e-04 TATTAAAAAT AAACGAAA A chr3L:7641637-7641757 98 2.62e-04 TGAATACCGA AACAGGAA ACGGCAACAT chr3R:11403024-11403144 24 2.94e-04 CTTAAGATGT AAGCGAAA GCAGCAAAGA chr2R:18128351-18128471 105 3.19e-04 AAACTGGCCG AACCGCAA GACCAGCC chr3R:23004313-23004433 8 3.19e-04 aaagtgg cggcggaa gtggCCAGAA chr3R:16643625-16643745 30 3.39e-04 ACAGAGTTGT AAAGGGAA AAATTCGATA chrX:14841979-14842099 55 3.89e-04 GCAGCCCTGG GGCCGGAA GTCGCTCCCT chr3L:3466342-3466462 69 3.89e-04 TGGTAGCACT GGCCGGAA CCGTTGTAGC chrX:15328282-15328402 69 4.09e-04 GCGCTAACGG AAGAGGAA GAGATCGCGA chrX:2275052-2275172 4 4.09e-04 aag aagaggaa AACGTTGACG chr3L:3225461-3225581 29 4.30e-04 ATTTACATTG AAACGCAA TAACCATTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAVCGGAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:13802316-13802436 1.6e-05 51_[+2]_61 chr2L:1732425-1732545 1.6e-05 21_[+2]_91 chr3R:11721076-11721196 1.6e-05 52_[+2]_60 chrX:13089622-13089742 1.6e-05 27_[+2]_85 chr2L:12076086-12076206 1.6e-05 56_[+2]_56 chr3R:11338410-11338530 1.6e-05 31_[+2]_81 chr2L:11221562-11221682 1.6e-05 59_[+2]_53 chr2R:19138064-19138184 1.6e-05 24_[+2]_88 chr2L:17960362-17960482 1.6e-05 47_[+2]_65 chr2R:11812331-11812451 1.6e-05 26_[+2]_86 chr2R:22614285-22614405 1.6e-05 87_[+2]_25 chr2R:22912006-22912126 1.6e-05 15_[+2]_97 chr3R:13319991-13320111 1.6e-05 73_[+2]_39 chr3L:20410939-20411059 1.6e-05 79_[+2]_33 chrX:3504426-3504546 1.6e-05 2_[+2]_110 chr3L:10734644-10734764 3.6e-05 39_[+2]_73 chr2L:6833931-6834051 3.6e-05 54_[+2]_58 chr3L:18088186-18088306 3.6e-05 104_[+2]_8 chr3L:19815878-19815998 3.6e-05 6_[+2]_106 chr2L:4345078-4345198 3.6e-05 62_[+2]_50 chr3R:7281558-7281678 3.6e-05 46_[+2]_66 chr2R:23754295-23754415 3.6e-05 73_[+2]_39 chr3L:8968492-8968612 3.6e-05 88_[+2]_24 chr3R:30934009-30934129 3.6e-05 50_[+2]_62 chrX:17968234-17968354 3.6e-05 15_[+2]_97 chr3L:21192111-21192231 3.6e-05 36_[+2]_76 chr2L:2967030-2967150 3.6e-05 33_[+2]_79 chr2R:19125797-19125917 3.6e-05 29_[+2]_83 chr2L:18934695-18934815 3.6e-05 61_[+2]_51 chr2L:4478116-4478236 3.6e-05 37_[+2]_75 chrX:12645485-12645605 3.6e-05 112_[+2] chr2L:18564534-18564654 3.6e-05 37_[+2]_75 chrX:2024932-2025052 3.6e-05 68_[+2]_44 chr3R:13063874-13063994 5.1e-05 21_[+2]_91 chrX:11797053-11797173 5.1e-05 6_[+2]_106 chr3L:14262901-14263021 5.1e-05 53_[+2]_59 chr3L:13005162-13005282 5.1e-05 36_[+2]_76 chr2L:8111161-8111281 5.1e-05 72_[+2]_40 chr3L:1859652-1859772 5.1e-05 49_[+2]_63 chr2L:5866918-5867038 5.1e-05 52_[+2]_60 chr3L:5096773-5096893 5.1e-05 58_[+2]_54 chr2R:9060128-9060248 7.6e-05 16_[+2]_96 chr3R:21263274-21263394 7.6e-05 53_[+2]_59 chrX:2140652-2140772 7.6e-05 21_[+2]_91 chr3L:11454586-11454706 7.6e-05 13_[+2]_99 chr2L:3748833-3748953 7.6e-05 11_[+2]_101 chrX:12785156-12785276 7.6e-05 98_[+2]_14 chrX:19762342-19762462 0.00011 81_[+2]_31 chr3L:9820391-9820511 0.00011 61_[+2]_51 chrX:12615921-12616041 0.00013 57_[+2]_55 chrX:2258723-2258843 0.00013 7_[+2]_105 chr2L:17433382-17433502 0.00013 61_[+2]_51 chr3R:5696509-5696629 0.00013 51_[+2]_61 chr2R:20888903-20889023 0.00013 47_[+2]_65 chr2L:8633826-8633946 0.00013 91_[+2]_21 chrX:12947810-12947930 0.00014 15_[+2]_97 chr2R:21417178-21417298 0.00014 65_[+2]_47 chr3L:6784743-6784863 0.00016 95_[+2]_17 chr3R:31090128-31090248 0.00016 110_[+2]_2 chrX:7676979-7677099 0.00019 53_[+2]_59 chr2R:11145082-11145202 0.00019 50_[+2]_62 chr2L:6092404-6092524 0.00022 22_[+2]_90 chr3L:34817-34937 0.00022 107_[+2]_5 chr3L:20769506-20769626 0.00026 73_[+2]_39 chr2L:4227666-4227786 0.00026 111_[+2]_1 chr3L:7641637-7641757 0.00026 97_[+2]_15 chr3R:11403024-11403144 0.00029 23_[+2]_89 chr2R:18128351-18128471 0.00032 104_[+2]_8 chr3R:23004313-23004433 0.00032 7_[+2]_105 chr3R:16643625-16643745 0.00034 29_[+2]_83 chrX:14841979-14842099 0.00039 54_[+2]_58 chr3L:3466342-3466462 0.00039 68_[+2]_44 chrX:15328282-15328402 0.00041 68_[+2]_44 chrX:2275052-2275172 0.00041 3_[+2]_109 chr3L:3225461-3225581 0.00043 28_[+2]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAVCGGAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAVCGGAA width=8 seqs=75 chr3R:13802316-13802436 ( 52) AACCGGAA 1 chr2L:1732425-1732545 ( 22) AACCGGAA 1 chr3R:11721076-11721196 ( 53) AACCGGAA 1 chrX:13089622-13089742 ( 28) AACCGGAA 1 chr2L:12076086-12076206 ( 57) AACCGGAA 1 chr3R:11338410-11338530 ( 32) AACCGGAA 1 chr2L:11221562-11221682 ( 60) AACCGGAA 1 chr2R:19138064-19138184 ( 25) AACCGGAA 1 chr2L:17960362-17960482 ( 48) AACCGGAA 1 chr2R:11812331-11812451 ( 27) AACCGGAA 1 chr2R:22614285-22614405 ( 88) AACCGGAA 1 chr2R:22912006-22912126 ( 16) AACCGGAA 1 chr3R:13319991-13320111 ( 74) AACCGGAA 1 chr3L:20410939-20411059 ( 80) AACCGGAA 1 chrX:3504426-3504546 ( 3) AACCGGAA 1 chr3L:10734644-10734764 ( 40) AAACGGAA 1 chr2L:6833931-6834051 ( 55) AAACGGAA 1 chr3L:18088186-18088306 ( 105) AAACGGAA 1 chr3L:19815878-19815998 ( 7) AAACGGAA 1 chr2L:4345078-4345198 ( 63) AAACGGAA 1 chr3R:7281558-7281678 ( 47) AAACGGAA 1 chr2R:23754295-23754415 ( 74) AAACGGAA 1 chr3L:8968492-8968612 ( 89) AAACGGAA 1 chr3R:30934009-30934129 ( 51) AAACGGAA 1 chrX:17968234-17968354 ( 16) AAACGGAA 1 chr3L:21192111-21192231 ( 37) AAACGGAA 1 chr2L:2967030-2967150 ( 34) AAACGGAA 1 chr2R:19125797-19125917 ( 30) AAACGGAA 1 chr2L:18934695-18934815 ( 62) AAACGGAA 1 chr2L:4478116-4478236 ( 38) AAACGGAA 1 chrX:12645485-12645605 ( 113) AAACGGAA 1 chr2L:18564534-18564654 ( 38) AAACGGAA 1 chrX:2024932-2025052 ( 69) AAACGGAA 1 chr3R:13063874-13063994 ( 22) AAGCGGAA 1 chrX:11797053-11797173 ( 7) AAGCGGAA 1 chr3L:14262901-14263021 ( 54) AAGCGGAA 1 chr3L:13005162-13005282 ( 37) AAGCGGAA 1 chr2L:8111161-8111281 ( 73) AAGCGGAA 1 chr3L:1859652-1859772 ( 50) AAGCGGAA 1 chr2L:5866918-5867038 ( 53) AAGCGGAA 1 chr3L:5096773-5096893 ( 59) AAGCGGAA 1 chr2R:9060128-9060248 ( 17) AGCCGGAA 1 chr3R:21263274-21263394 ( 54) CACCGGAA 1 chrX:2140652-2140772 ( 22) CACCGGAA 1 chr3L:11454586-11454706 ( 14) AGCCGGAA 1 chr2L:3748833-3748953 ( 12) CACCGGAA 1 chrX:12785156-12785276 ( 99) CACCGGAA 1 chrX:19762342-19762462 ( 82) CAACGGAA 1 chr3L:9820391-9820511 ( 62) CAACGGAA 1 chrX:12615921-12616041 ( 58) CAGCGGAA 1 chrX:2258723-2258843 ( 8) CAGCGGAA 1 chr2L:17433382-17433502 ( 62) AGGCGGAA 1 chr3R:5696509-5696629 ( 52) AGGCGGAA 1 chr2R:20888903-20889023 ( 48) AGGCGGAA 1 chr2L:8633826-8633946 ( 92) AGGCGGAA 1 chrX:12947810-12947930 ( 16) GACCGGAA 1 chr2R:21417178-21417298 ( 66) GACCGGAA 1 chr3L:6784743-6784863 ( 96) AACCGAAA 1 chr3R:31090128-31090248 ( 111) AACCGAAA 1 chrX:7676979-7677099 ( 54) CGCCGGAA 1 chr2R:11145082-11145202 ( 51) CGCCGGAA 1 chr2L:6092404-6092524 ( 23) AACGGGAA 1 chr3L:34817-34937 ( 108) AACGGGAA 1 chr3L:20769506-20769626 ( 74) AAACGAAA 1 chr2L:4227666-4227786 ( 112) AAACGAAA 1 chr3L:7641637-7641757 ( 98) AACAGGAA 1 chr3R:11403024-11403144 ( 24) AAGCGAAA 1 chr2R:18128351-18128471 ( 105) AACCGCAA 1 chr3R:23004313-23004433 ( 8) CGGCGGAA 1 chr3R:16643625-16643745 ( 30) AAAGGGAA 1 chrX:14841979-14842099 ( 55) GGCCGGAA 1 chr3L:3466342-3466462 ( 69) GGCCGGAA 1 chrX:15328282-15328402 ( 69) AAGAGGAA 1 chrX:2275052-2275172 ( 4) AAGAGGAA 1 chr3L:3225461-3225581 ( 29) AAACGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAVCGGAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.73382 E= 1.5e-029 149 -60 -204 -1287 158 -1287 -58 -1287 17 98 13 -1287 -283 205 -245 -1287 -1287 -1287 219 -1287 -210 -306 205 -1287 181 -1287 -1287 -1287 181 -1287 -1287 -1287 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAVCGGAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 75 E= 1.5e-029 0.800000 0.146667 0.053333 0.000000 0.853333 0.000000 0.146667 0.000000 0.320000 0.440000 0.240000 0.000000 0.040000 0.920000 0.040000 0.000000 0.000000 0.000000 1.000000 0.000000 0.066667 0.026667 0.906667 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAVCGGAA MEME-2 regular expression -------------------------------------------------------------------------------- AA[CAG]CGGAA -------------------------------------------------------------------------------- Time 13.88 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTKRCC MEME-3 width = 8 sites = 40 llr = 367 E-value = 4.6e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1:::4:: pos.-specific C :2:1::aa probability G a:a:76:: matrix T :7:a4::: bits 2.2 * * ** 2.0 * * ** 1.8 * * ** 1.5 * ** ** Relative 1.3 * ** ** Entropy 1.1 * ****** (13.2 bits) 0.9 * ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGGCC consensus C TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:10001281-10001401 84 8.53e-06 AACTTATTTG GTGTGGCC ACTTTATAAC chrX:15849183-15849303 56 8.53e-06 AATCCGGTCA GTGTGGCC AACTAGTTTT chr2R:10075612-10075732 47 8.53e-06 ACGGGCAACA GTGTGGCC GTTCGTTAAT chrX:11579003-11579123 10 8.53e-06 CAGTCATTA GTGTGGCC AAAACTCGAA chr2R:13623533-13623653 5 8.53e-06 GTGA GTGTGGCC AGCGTTTCGG chr3L:329259-329379 11 8.53e-06 TAAAAATAAA GTGTGGCC TTTGCTTGGA chr3L:7641637-7641757 16 8.53e-06 ACGAGTTGCA GTGTGGCC CACACTTGGG chr3L:21131503-21131623 112 2.66e-05 AAGGACTTTA GTGTGACC C chr3R:24360064-24360184 61 2.66e-05 GTGATATTAA GTGTGACC GCGGAATGGC chr3R:21130130-21130250 47 2.66e-05 GGCAAAGGCT GTGTGACC AGCTATCGGT chr2L:2383063-2383183 45 2.66e-05 ATTTATTTAA GTGTGACC AAATGATTTC chr3R:20816130-20816250 54 2.66e-05 TGCAGGTGCA GTGTGACC GAGCATTGAC chr3R:15485939-15486059 76 2.66e-05 TCCTTCATCA GTGTGACC GCTTTTAGTA chr2R:20287058-20287178 15 2.66e-05 CACATGCGCA GTGTGACC GTATGTCGTA chr2L:18682002-18682122 46 2.66e-05 CAATGCATCA GTGTGACC AAAGTGCGAT chr3L:7640381-7640501 83 2.66e-05 GTAAATAAAT GTGTGACC GCGTCTAAGC chrX:8094030-8094150 18 2.66e-05 CGCCTGCAGA GTGTGACC ATTGATGACC chr3R:28886911-28887031 103 2.66e-05 ggttccggtt gcgtggcc gtttccgttt chr3R:25045121-25045241 15 2.66e-05 TCAAGGCGCA GTGTGACC ATACCGCCTG chr3L:11720826-11720946 35 2.66e-05 CCGCTGTTAA GTGTGACC AAAATCAATT chr3L:12417552-12417672 110 2.66e-05 TTGTTTTGCA GTGTGACC AAA chr3R:13319991-13320111 53 2.66e-05 CTTTCTGGCT GTGTGACC AATGAAATAG chr3L:5749777-5749897 53 3.72e-05 GCCAGGTGGC GTGTTGCC CTCTGGAAGT chr3R:9003916-9004036 69 3.72e-05 AGCTGAACGC GTGTTGCC ATATCAAGTT chrX:11797053-11797173 87 3.72e-05 GTTACGGCAA GTGTTGCC CTATCGTTCC chr2R:9400253-9400373 53 4.63e-05 AAATATTTCA GCGTGACC GTAGATCGAC chr2R:17581484-17581604 37 7.77e-05 GCCGGTGACA GAGTGGCC AGCGGCTCTT chr3L:8175930-8176050 72 7.77e-05 CCATGTGACA GAGTGGCC AGACTATCAC chrX:6674315-6674435 52 7.77e-05 CTGCGCACGA GCGTTGCC ACCCCCAAGC chrX:15328282-15328402 25 7.77e-05 AACACGCGCG GCGTTGCC ACCTCACGCC chrX:5754935-5755055 55 7.77e-05 AAAAACTATA GCGTTGCC ACTTTCAACA chr4:1084784-1084904 61 7.77e-05 CAATATTTCA GCGTTGCC ATATTTGCAC chrX:10463168-10463288 67 7.77e-05 GGATGCGGCG GCGTTGCC ACCCGTGTGC chr2L:19079890-19080010 23 7.77e-05 GCCACGCGAA GCGTTGCC ACCTTTCTCA chrX:19190053-19190173 48 7.77e-05 TGAATCTAGG GCGTTGCC AGAGTTTGAA chr2R:12686135-12686255 24 1.12e-04 CGCGGCGTTG GAGTTGCC ACCTAGCACA chrX:17856631-17856751 9 1.12e-04 AATGCACA GAGTTGCC AATCGACCGC chrX:17842039-17842159 49 1.12e-04 GCCAGAGCCA GAGTTGCC ACCCTGCAGT chrX:3504426-3504546 46 1.19e-04 TGGCCAAGCA GTGCGGCC ATAAGGCGGC chrX:1460636-1460756 53 1.56e-04 ATCGAAAACA GTGCTGCC CATCTGTATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10001281-10001401 8.5e-06 83_[+3]_29 chrX:15849183-15849303 8.5e-06 55_[+3]_57 chr2R:10075612-10075732 8.5e-06 46_[+3]_66 chrX:11579003-11579123 8.5e-06 9_[+3]_103 chr2R:13623533-13623653 8.5e-06 4_[+3]_108 chr3L:329259-329379 8.5e-06 10_[+3]_102 chr3L:7641637-7641757 8.5e-06 15_[+3]_97 chr3L:21131503-21131623 2.7e-05 111_[+3]_1 chr3R:24360064-24360184 2.7e-05 60_[+3]_52 chr3R:21130130-21130250 2.7e-05 46_[+3]_66 chr2L:2383063-2383183 2.7e-05 44_[+3]_68 chr3R:20816130-20816250 2.7e-05 53_[+3]_59 chr3R:15485939-15486059 2.7e-05 75_[+3]_37 chr2R:20287058-20287178 2.7e-05 14_[+3]_98 chr2L:18682002-18682122 2.7e-05 45_[+3]_67 chr3L:7640381-7640501 2.7e-05 82_[+3]_30 chrX:8094030-8094150 2.7e-05 17_[+3]_95 chr3R:28886911-28887031 2.7e-05 102_[+3]_10 chr3R:25045121-25045241 2.7e-05 14_[+3]_98 chr3L:11720826-11720946 2.7e-05 34_[+3]_78 chr3L:12417552-12417672 2.7e-05 109_[+3]_3 chr3R:13319991-13320111 2.7e-05 52_[+3]_60 chr3L:5749777-5749897 3.7e-05 52_[+3]_60 chr3R:9003916-9004036 3.7e-05 68_[+3]_44 chrX:11797053-11797173 3.7e-05 86_[+3]_26 chr2R:9400253-9400373 4.6e-05 52_[+3]_60 chr2R:17581484-17581604 7.8e-05 36_[+3]_76 chr3L:8175930-8176050 7.8e-05 71_[+3]_41 chrX:6674315-6674435 7.8e-05 51_[+3]_61 chrX:15328282-15328402 7.8e-05 24_[+3]_88 chrX:5754935-5755055 7.8e-05 54_[+3]_58 chr4:1084784-1084904 7.8e-05 60_[+3]_52 chrX:10463168-10463288 7.8e-05 66_[+3]_46 chr2L:19079890-19080010 7.8e-05 22_[+3]_90 chrX:19190053-19190173 7.8e-05 47_[+3]_65 chr2R:12686135-12686255 0.00011 23_[+3]_89 chrX:17856631-17856751 0.00011 8_[+3]_104 chrX:17842039-17842159 0.00011 48_[+3]_64 chrX:3504426-3504546 0.00012 45_[+3]_67 chrX:1460636-1460756 0.00016 52_[+3]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTKRCC width=8 seqs=40 chr3R:10001281-10001401 ( 84) GTGTGGCC 1 chrX:15849183-15849303 ( 56) GTGTGGCC 1 chr2R:10075612-10075732 ( 47) GTGTGGCC 1 chrX:11579003-11579123 ( 10) GTGTGGCC 1 chr2R:13623533-13623653 ( 5) GTGTGGCC 1 chr3L:329259-329379 ( 11) GTGTGGCC 1 chr3L:7641637-7641757 ( 16) GTGTGGCC 1 chr3L:21131503-21131623 ( 112) GTGTGACC 1 chr3R:24360064-24360184 ( 61) GTGTGACC 1 chr3R:21130130-21130250 ( 47) GTGTGACC 1 chr2L:2383063-2383183 ( 45) GTGTGACC 1 chr3R:20816130-20816250 ( 54) GTGTGACC 1 chr3R:15485939-15486059 ( 76) GTGTGACC 1 chr2R:20287058-20287178 ( 15) GTGTGACC 1 chr2L:18682002-18682122 ( 46) GTGTGACC 1 chr3L:7640381-7640501 ( 83) GTGTGACC 1 chrX:8094030-8094150 ( 18) GTGTGACC 1 chr3R:28886911-28887031 ( 103) GCGTGGCC 1 chr3R:25045121-25045241 ( 15) GTGTGACC 1 chr3L:11720826-11720946 ( 35) GTGTGACC 1 chr3L:12417552-12417672 ( 110) GTGTGACC 1 chr3R:13319991-13320111 ( 53) GTGTGACC 1 chr3L:5749777-5749897 ( 53) GTGTTGCC 1 chr3R:9003916-9004036 ( 69) GTGTTGCC 1 chrX:11797053-11797173 ( 87) GTGTTGCC 1 chr2R:9400253-9400373 ( 53) GCGTGACC 1 chr2R:17581484-17581604 ( 37) GAGTGGCC 1 chr3L:8175930-8176050 ( 72) GAGTGGCC 1 chrX:6674315-6674435 ( 52) GCGTTGCC 1 chrX:15328282-15328402 ( 25) GCGTTGCC 1 chrX:5754935-5755055 ( 55) GCGTTGCC 1 chr4:1084784-1084904 ( 61) GCGTTGCC 1 chrX:10463168-10463288 ( 67) GCGTTGCC 1 chr2L:19079890-19080010 ( 23) GCGTTGCC 1 chrX:19190053-19190173 ( 48) GCGTTGCC 1 chr2R:12686135-12686255 ( 24) GAGTTGCC 1 chrX:17856631-17856751 ( 9) GAGTTGCC 1 chrX:17842039-17842159 ( 49) GAGTTGCC 1 chrX:3504426-3504546 ( 46) GTGCGGCC 1 chrX:1460636-1460756 ( 53) GTGCTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4064 E= 4.6e-014 -1197 -1197 219 -1197 -119 2 -1197 125 -1197 -1197 219 -1197 -1197 -215 -1197 180 -1197 -1197 157 36 39 -1197 151 -1197 -1197 217 -1197 -1197 -1197 217 -1197 -1197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 4.6e-014 0.000000 0.000000 1.000000 0.000000 0.125000 0.225000 0.000000 0.650000 0.000000 0.000000 1.000000 0.000000 0.000000 0.050000 0.000000 0.950000 0.000000 0.000000 0.650000 0.350000 0.375000 0.000000 0.625000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-3 regular expression -------------------------------------------------------------------------------- G[TC]GT[GT][GA]CC -------------------------------------------------------------------------------- Time 19.96 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCCGBTT MEME-4 width = 8 sites = 43 llr = 382 E-value = 1.0e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCCGBTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::aa:3:1 probability G ::::a4:1 matrix T aa:::2a8 bits 2.2 * 2.0 ***** 1.8 ***** 1.5 ***** * Relative 1.3 ***** * Entropy 1.1 ***** ** (12.8 bits) 0.9 ***** ** 0.7 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCCGGTT consensus C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCGBTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:22480653-22480773 61 1.32e-05 TTTAGGCGAC TTCCGGTT CCCTTTCGCT chr2L:15249145-15249265 95 1.32e-05 CGGCTGCCGT TTCCGGTT CCGGTGCCAC chr3L:2828724-2828844 67 1.32e-05 GTGTTTCCTC TTCCGGTT GCCTCCCCCT chr2L:9850928-9851048 65 1.32e-05 ATTTGTGCAC TTCCGGTT GCGCTCAAAA chr2R:13623533-13623653 54 1.32e-05 AATTTCCGGT TTCCGGTT CCGCCGGCGC chr3R:28886911-28887031 89 1.32e-05 actgttccag ttccggtt ccggttgcgt chrX:11993435-11993555 110 1.32e-05 TGGCCACCGG TTCCGGTT CGT chr3R:23297226-23297346 108 1.32e-05 TTACGACCAT TTCCGGTT GAAGC chr3R:20898766-20898886 27 1.32e-05 TCATTTACGC TTCCGGTT GCGGCTGACG chrX:11087573-11087693 14 1.32e-05 GTAGGCAATT TTCCGGTT ACACATGACT chrX:14234611-14234731 79 1.32e-05 CCATTTCCGT TTCCGGTT CAGTGACGTC chrX:12785156-12785276 37 1.32e-05 CATGATTTGA TTCCGGTT TTAAGGAGGG chr3L:8932049-8932169 56 1.32e-05 ATATGGTCAT TTCCGGTT TTGGAAGTTT chr3L:20792852-20792972 66 2.67e-05 GTGGTTCCGT TTCCGCTT CTCGTCCGCG chrX:16321186-16321306 56 2.67e-05 CAAATTTGTT TTCCGCTT TTTCTCGCGC chr2R:14661092-14661212 72 2.67e-05 ACAAATGTAC TTCCGCTT GTGCGGCAGT chrX:17865202-17865322 76 2.67e-05 TTGCTTTCAT TTCCGCTT CCTTTCCAAA chr3L:6784743-6784863 80 2.67e-05 AAGGGTTCAC TTCCGCTT CCTATAAGAA chrX:17968234-17968354 103 2.67e-05 TCTGCGGCCT TTCCGCTT TCCAGTCGAA chr3L:1859652-1859772 91 2.67e-05 CTTGTCTCGA TTCCGCTT CCGTTTTCGT chr3R:10053716-10053836 35 2.67e-05 GAAAACATAT TTCCGCTT TCAGGCAAAA chr3L:34817-34937 21 4.33e-05 TCAACACTGC TTCCGTTT CCGCACTTGA chrX:11388839-11388959 94 4.33e-05 CGTCGCCCAT TTCCGTTT CCGGTGCGCT chrX:8780833-8780953 48 4.33e-05 ACATTTCCGT TTCCGTTT TGTATACATA chrX:2106498-2106618 111 4.33e-05 GATTTATAAC TTCCGTTT TG chrX:10462075-10462195 73 4.33e-05 TTCCTCTTCG TTCCGTTT CCGGCCTAAA chr3R:13319991-13320111 112 4.33e-05 GTTTGTTTAA TTCCGTTT G chrX:14841979-14842099 17 5.39e-05 AAATTTTTTT TTCCGGTG CAACCTTGCC chr3R:26956507-26956627 47 5.39e-05 GAGGCACTGT TTCCGGTG AGCAGCAGCG chr2R:22614285-22614405 29 6.47e-05 CGTTTTCATT TTCCGCTG TCCATTTCAG chr3L:18947071-18947191 88 7.55e-05 GAGCGAGTGT TTCCGGtc tcttcatctc chrX:9089382-9089502 73 1.17e-04 GTTAGCACCT TTCCGTTG TCGGTATTTC chr4:834972-835092 49 1.17e-04 CAGCCCTGCA TTCCGATT ACAATCAAAT chr3R:18267789-18267909 49 1.17e-04 GCAGTTAAAC TTCCGCTC GATTTTCTAT chr2R:10395819-10395939 55 1.17e-04 AGGATATCCG TTCCGTTG CGTGTAAACA chr3R:16643625-16643745 50 1.17e-04 ATTCGATAAG TTCCGATT GAAAGTGCAA chr2L:19079890-19080010 53 1.17e-04 CGCCAAGCAT TTCCGCTC ATGTTGCTGA chrX:1460636-1460756 82 1.17e-04 GCATACCCGT TTCCGTTG CAGATTTTGA chr3L:8968492-8968612 29 1.28e-04 CAACAAAGCT TTCCGGCT CAGTGAGCGA chr3L:1748429-1748549 34 1.39e-04 CGAGCGCAGC TTCCGCCT GGTGGCGGCT chr2L:13793443-13793563 89 1.85e-04 GCTCAGTAAT TTTCGCTT ACACGGTCAC chr3R:7281558-7281678 112 1.85e-04 GTGTGTGAGT TTTCGCTT G chr3R:16640054-16640174 43 2.12e-04 AAAATCGATT TTCCCGTT TTTCCTATTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCGBTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:22480653-22480773 1.3e-05 60_[+4]_52 chr2L:15249145-15249265 1.3e-05 94_[+4]_18 chr3L:2828724-2828844 1.3e-05 66_[+4]_46 chr2L:9850928-9851048 1.3e-05 64_[+4]_48 chr2R:13623533-13623653 1.3e-05 53_[+4]_59 chr3R:28886911-28887031 1.3e-05 88_[+4]_24 chrX:11993435-11993555 1.3e-05 109_[+4]_3 chr3R:23297226-23297346 1.3e-05 107_[+4]_5 chr3R:20898766-20898886 1.3e-05 26_[+4]_86 chrX:11087573-11087693 1.3e-05 13_[+4]_99 chrX:14234611-14234731 1.3e-05 78_[+4]_34 chrX:12785156-12785276 1.3e-05 36_[+4]_76 chr3L:8932049-8932169 1.3e-05 55_[+4]_57 chr3L:20792852-20792972 2.7e-05 65_[+4]_47 chrX:16321186-16321306 2.7e-05 55_[+4]_57 chr2R:14661092-14661212 2.7e-05 71_[+4]_41 chrX:17865202-17865322 2.7e-05 75_[+4]_37 chr3L:6784743-6784863 2.7e-05 79_[+4]_33 chrX:17968234-17968354 2.7e-05 102_[+4]_10 chr3L:1859652-1859772 2.7e-05 90_[+4]_22 chr3R:10053716-10053836 2.7e-05 34_[+4]_78 chr3L:34817-34937 4.3e-05 20_[+4]_92 chrX:11388839-11388959 4.3e-05 93_[+4]_19 chrX:8780833-8780953 4.3e-05 47_[+4]_65 chrX:2106498-2106618 4.3e-05 110_[+4]_2 chrX:10462075-10462195 4.3e-05 72_[+4]_40 chr3R:13319991-13320111 4.3e-05 111_[+4]_1 chrX:14841979-14842099 5.4e-05 16_[+4]_96 chr3R:26956507-26956627 5.4e-05 46_[+4]_66 chr2R:22614285-22614405 6.5e-05 28_[+4]_84 chr3L:18947071-18947191 7.6e-05 87_[+4]_25 chrX:9089382-9089502 0.00012 72_[+4]_40 chr4:834972-835092 0.00012 48_[+4]_64 chr3R:18267789-18267909 0.00012 48_[+4]_64 chr2R:10395819-10395939 0.00012 54_[+4]_58 chr3R:16643625-16643745 0.00012 49_[+4]_63 chr2L:19079890-19080010 0.00012 52_[+4]_60 chrX:1460636-1460756 0.00012 81_[+4]_31 chr3L:8968492-8968612 0.00013 28_[+4]_84 chr3L:1748429-1748549 0.00014 33_[+4]_79 chr2L:13793443-13793563 0.00019 88_[+4]_24 chr3R:7281558-7281678 0.00019 111_[+4]_1 chr3R:16640054-16640174 0.00021 42_[+4]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCGBTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCCGBTT width=8 seqs=43 chrX:22480653-22480773 ( 61) TTCCGGTT 1 chr2L:15249145-15249265 ( 95) TTCCGGTT 1 chr3L:2828724-2828844 ( 67) TTCCGGTT 1 chr2L:9850928-9851048 ( 65) TTCCGGTT 1 chr2R:13623533-13623653 ( 54) TTCCGGTT 1 chr3R:28886911-28887031 ( 89) TTCCGGTT 1 chrX:11993435-11993555 ( 110) TTCCGGTT 1 chr3R:23297226-23297346 ( 108) TTCCGGTT 1 chr3R:20898766-20898886 ( 27) TTCCGGTT 1 chrX:11087573-11087693 ( 14) TTCCGGTT 1 chrX:14234611-14234731 ( 79) TTCCGGTT 1 chrX:12785156-12785276 ( 37) TTCCGGTT 1 chr3L:8932049-8932169 ( 56) TTCCGGTT 1 chr3L:20792852-20792972 ( 66) TTCCGCTT 1 chrX:16321186-16321306 ( 56) TTCCGCTT 1 chr2R:14661092-14661212 ( 72) TTCCGCTT 1 chrX:17865202-17865322 ( 76) TTCCGCTT 1 chr3L:6784743-6784863 ( 80) TTCCGCTT 1 chrX:17968234-17968354 ( 103) TTCCGCTT 1 chr3L:1859652-1859772 ( 91) TTCCGCTT 1 chr3R:10053716-10053836 ( 35) TTCCGCTT 1 chr3L:34817-34937 ( 21) TTCCGTTT 1 chrX:11388839-11388959 ( 94) TTCCGTTT 1 chrX:8780833-8780953 ( 48) TTCCGTTT 1 chrX:2106498-2106618 ( 111) TTCCGTTT 1 chrX:10462075-10462195 ( 73) TTCCGTTT 1 chr3R:13319991-13320111 ( 112) TTCCGTTT 1 chrX:14841979-14842099 ( 17) TTCCGGTG 1 chr3R:26956507-26956627 ( 47) TTCCGGTG 1 chr2R:22614285-22614405 ( 29) TTCCGCTG 1 chr3L:18947071-18947191 ( 88) TTCCGGTC 1 chrX:9089382-9089502 ( 73) TTCCGTTG 1 chr4:834972-835092 ( 49) TTCCGATT 1 chr3R:18267789-18267909 ( 49) TTCCGCTC 1 chr2R:10395819-10395939 ( 55) TTCCGTTG 1 chr3R:16643625-16643745 ( 50) TTCCGATT 1 chr2L:19079890-19080010 ( 53) TTCCGCTC 1 chrX:1460636-1460756 ( 82) TTCCGTTG 1 chr3L:8968492-8968612 ( 29) TTCCGGCT 1 chr3L:1748429-1748549 ( 34) TTCCGCCT 1 chr2L:13793443-13793563 ( 89) TTTCGCTT 1 chr3R:7281558-7281678 ( 112) TTTCGCTT 1 chr3R:16640054-16640174 ( 43) TTCCCGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCGBTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3653 E= 1.0e-012 -1207 -1207 -1207 187 -1207 -1207 -1207 187 -1207 210 -1207 -255 -1207 217 -1207 -1207 -1207 -326 216 -1207 -262 55 93 -38 -1207 -226 -1207 180 -1207 -167 -65 153 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCGBTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 1.0e-012 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.953488 0.000000 0.046512 0.000000 1.000000 0.000000 0.000000 0.000000 0.023256 0.976744 0.000000 0.046512 0.325581 0.418605 0.209302 0.000000 0.046512 0.000000 0.953488 0.000000 0.069767 0.139535 0.790698 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCGBTT MEME-4 regular expression -------------------------------------------------------------------------------- TTCCG[GCT]TT -------------------------------------------------------------------------------- Time 25.94 secs. ******************************************************************************** ******************************************************************************** MOTIF GGYCACAC MEME-5 width = 8 sites = 29 llr = 272 E-value = 2.1e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGYCACAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::38:a: pos.-specific C ::37:a:a probability G aa2:2::: matrix T ::5::::: bits 2.2 ** * * 2.0 ** * * 1.8 ** *** 1.5 ** *** Relative 1.3 ** ***** Entropy 1.1 ** ***** (13.5 bits) 0.9 ** ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGTCACAC consensus CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYCACAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:328019-328139 61 1.18e-05 TATCAAGCAC GGTCACAC TTTATCTTAT chr2R:17581484-17581604 105 1.18e-05 AAAACGGACT GGTCACAC TACGCAGT chr3R:23933820-23933940 92 1.18e-05 ATCACGGGAT GGTCACAC TAGAAATACA chr2L:9330662-9330782 113 1.18e-05 CTATTAGTAC GGTCACAC chr2L:13793443-13793563 101 1.18e-05 TCGCTTACAC GGTCACAC TTCTGATGAC chr3L:8986658-8986778 78 1.18e-05 TCTCGATTAC GGTCACAC TGCAATACTT chr3R:22035609-22035729 56 1.18e-05 TTACAAATAG GGTCACAC CTTTTGCATT chr2R:11219255-11219375 21 1.18e-05 CCCCTCGCCT GGTCACAC TTCCTGACTC chrX:11579003-11579123 73 1.18e-05 TTCGCGGCCT GGTCACAC TAAGCTAGGG chrX:2585858-2585978 91 2.14e-05 GGTGCGCAAC GGCCACAC TGACGCGCTG chr3R:11750059-11750179 85 2.14e-05 TGCGCAGTAT GGCCACAC TGATAATTCA chrX:15482314-15482434 30 2.14e-05 GAAGCGCGCT GGCCACAC TTTTCATCTC chr2L:4227666-4227786 26 2.14e-05 GCTCGGCGGC GGCCACAC TCTCTTTTCC chr2R:23357390-23357510 29 3.09e-05 GTATAGAAAC GGGCACAC TAATGCGCAG chr3R:27954079-27954199 52 3.09e-05 GCGGATCTTT GGGCACAC TACGAGCGCT chr3L:8968492-8968612 48 3.09e-05 AGTGAGCGAC GGGCACAC TGGCACAAAG chr3L:7243878-7243998 92 4.60e-05 GTAAGGAGAT GGTAACAC AAAAATACTG chr2R:12686135-12686255 65 4.60e-05 ACAATCAGCT GGTAACAC CGAAGGTGTA chr3L:3466342-3466462 7 4.60e-05 GCGAAT GGTAACAC TCCCAAGCGC chrX:17305667-17305787 87 5.83e-05 GCATGGATCT GGCAACAC TCTCCAAAAA chr3R:15485939-15486059 49 5.83e-05 TCCAAAGTGT GGCAACAC CAGCAAGTTT chr3R:18267789-18267909 103 5.83e-05 CAGAACTGTA GGCAACAC TTTTTGCAGT chr3L:20800312-20800432 82 5.83e-05 CCAACGATCT GGCAACAC CGTCTGCCAT chr3R:15346082-15346202 102 5.83e-05 ATAGCCAATG GGCAACAC ATGGCCAATC chr2L:12093664-12093784 37 6.73e-05 TTACGAATGC GGTCGCAC TAAGATGTGA chr2L:22538179-22538299 108 6.73e-05 TACTCGCCAA GGTCGCAC TTATA chr2R:11812331-11812451 70 7.47e-05 CGATAACTCA GGCCGCAC TTCATCCAGT chr3L:648346-648466 23 9.41e-05 ACACCGATAT GGGCGCAC TTCTTGTTTT chrX:2140652-2140772 14 9.41e-05 AATAAAAAAT GGGCGCAC CACCGGAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYCACAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:328019-328139 1.2e-05 60_[+5]_52 chr2R:17581484-17581604 1.2e-05 104_[+5]_8 chr3R:23933820-23933940 1.2e-05 91_[+5]_21 chr2L:9330662-9330782 1.2e-05 112_[+5] chr2L:13793443-13793563 1.2e-05 100_[+5]_12 chr3L:8986658-8986778 1.2e-05 77_[+5]_35 chr3R:22035609-22035729 1.2e-05 55_[+5]_57 chr2R:11219255-11219375 1.2e-05 20_[+5]_92 chrX:11579003-11579123 1.2e-05 72_[+5]_40 chrX:2585858-2585978 2.1e-05 90_[+5]_22 chr3R:11750059-11750179 2.1e-05 84_[+5]_28 chrX:15482314-15482434 2.1e-05 29_[+5]_83 chr2L:4227666-4227786 2.1e-05 25_[+5]_87 chr2R:23357390-23357510 3.1e-05 28_[+5]_84 chr3R:27954079-27954199 3.1e-05 51_[+5]_61 chr3L:8968492-8968612 3.1e-05 47_[+5]_65 chr3L:7243878-7243998 4.6e-05 91_[+5]_21 chr2R:12686135-12686255 4.6e-05 64_[+5]_48 chr3L:3466342-3466462 4.6e-05 6_[+5]_106 chrX:17305667-17305787 5.8e-05 86_[+5]_26 chr3R:15485939-15486059 5.8e-05 48_[+5]_64 chr3R:18267789-18267909 5.8e-05 102_[+5]_10 chr3L:20800312-20800432 5.8e-05 81_[+5]_31 chr3R:15346082-15346202 5.8e-05 101_[+5]_11 chr2L:12093664-12093784 6.7e-05 36_[+5]_76 chr2L:22538179-22538299 6.7e-05 107_[+5]_5 chr2R:11812331-11812451 7.5e-05 69_[+5]_43 chr3L:648346-648466 9.4e-05 22_[+5]_90 chrX:2140652-2140772 9.4e-05 13_[+5]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYCACAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGYCACAC width=8 seqs=29 chr3L:328019-328139 ( 61) GGTCACAC 1 chr2R:17581484-17581604 ( 105) GGTCACAC 1 chr3R:23933820-23933940 ( 92) GGTCACAC 1 chr2L:9330662-9330782 ( 113) GGTCACAC 1 chr2L:13793443-13793563 ( 101) GGTCACAC 1 chr3L:8986658-8986778 ( 78) GGTCACAC 1 chr3R:22035609-22035729 ( 56) GGTCACAC 1 chr2R:11219255-11219375 ( 21) GGTCACAC 1 chrX:11579003-11579123 ( 73) GGTCACAC 1 chrX:2585858-2585978 ( 91) GGCCACAC 1 chr3R:11750059-11750179 ( 85) GGCCACAC 1 chrX:15482314-15482434 ( 30) GGCCACAC 1 chr2L:4227666-4227786 ( 26) GGCCACAC 1 chr2R:23357390-23357510 ( 29) GGGCACAC 1 chr3R:27954079-27954199 ( 52) GGGCACAC 1 chr3L:8968492-8968612 ( 48) GGGCACAC 1 chr3L:7243878-7243998 ( 92) GGTAACAC 1 chr2R:12686135-12686255 ( 65) GGTAACAC 1 chr3L:3466342-3466462 ( 7) GGTAACAC 1 chrX:17305667-17305787 ( 87) GGCAACAC 1 chr3R:15485939-15486059 ( 49) GGCAACAC 1 chr3R:18267789-18267909 ( 103) GGCAACAC 1 chr3L:20800312-20800432 ( 82) GGCAACAC 1 chr3R:15346082-15346202 ( 102) GGCAACAC 1 chr2L:12093664-12093784 ( 37) GGTCGCAC 1 chr2L:22538179-22538299 ( 108) GGTCGCAC 1 chr2R:11812331-11812451 ( 70) GGCCGCAC 1 chr3L:648346-648466 ( 23) GGGCGCAC 1 chrX:2140652-2140772 ( 14) GGGCGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYCACAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1765 E= 2.1e-005 -1150 -1150 219 -1150 -1150 -1150 219 -1150 -1150 63 -35 82 -5 170 -1150 -1150 154 -1150 -35 -1150 -1150 217 -1150 -1150 181 -1150 -1150 -1150 -1150 217 -1150 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYCACAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 2.1e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.344828 0.172414 0.482759 0.275862 0.724138 0.000000 0.000000 0.827586 0.000000 0.172414 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYCACAC MEME-5 regular expression -------------------------------------------------------------------------------- GG[TC][CA]ACAC -------------------------------------------------------------------------------- Time 31.83 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:31264054-31264174 9.39e-01 120 chr2R:21417178-21417298 5.75e-02 120 chrX:3504426-3504546 3.39e-03 2_[+2(1.57e-05)]_110 chr3R:11208863-11208983 1.54e-01 120 chrX:2024932-2025052 7.44e-02 68_[+2(3.58e-05)]_44 chr3L:20410939-20411059 2.68e-02 79_[+2(1.57e-05)]_33 chr3R:13319991-13320111 7.04e-05 52_[+3(2.66e-05)]_13_[+2(1.57e-05)]_\ 30_[+4(4.33e-05)]_1 chr3R:11403024-11403144 3.32e-01 120 chr3L:5096773-5096893 2.01e-01 58_[+2(5.13e-05)]_54 chr2L:9089702-9089822 9.12e-01 120 chr2L:18564534-18564654 4.98e-02 37_[+2(3.58e-05)]_75 chr2L:5866918-5867038 1.10e-01 52_[+2(5.13e-05)]_60 chrX:805974-806094 2.10e-01 120 chr3L:8932049-8932169 3.15e-02 55_[+4(1.32e-05)]_57 chr3R:10053716-10053836 1.12e-01 34_[+4(2.67e-05)]_78 chrX:12785156-12785276 4.08e-03 36_[+4(1.32e-05)]_54_[+2(7.57e-05)]_\ 14 chrX:12645485-12645605 1.02e-02 112_[+2(3.58e-05)] chr2R:22912006-22912126 6.89e-02 15_[+2(1.57e-05)]_28_[+2(1.57e-05)]_\ 61 chr3L:18947071-18947191 3.62e-02 87_[+4(7.55e-05)]_25 chrX:19190053-19190173 1.40e-01 47_[+3(7.77e-05)]_65 chr2R:16867292-16867412 3.50e-01 120 chr3L:7641637-7641757 6.19e-04 15_[+3(8.53e-06)]_97 chr3L:9820391-9820511 3.56e-01 120 chrX:10462075-10462195 4.53e-02 72_[+4(4.33e-05)]_40 chr2R:8051913-8052033 9.31e-01 120 chr2R:11145082-11145202 8.14e-02 120 chrX:2106498-2106618 4.94e-03 25_[+1(4.50e-05)]_77_[+4(4.33e-05)]_\ 2 chr3R:31090128-31090248 2.22e-01 120 chr2R:22614285-22614405 1.20e-03 28_[+4(6.47e-05)]_51_[+2(1.57e-05)]_\ 25 chrX:14234611-14234731 1.20e-01 51_[+4(1.32e-05)]_19_[+4(1.32e-05)]_\ 34 chrX:18138487-18138607 5.78e-01 120 chr3L:12417552-12417672 5.81e-05 61_[+1(2.30e-05)]_40_[+3(2.66e-05)]_\ 3 chrX:11087573-11087693 5.15e-03 13_[+4(1.32e-05)]_83_[+4(1.32e-05)]_\ 8 chr2L:4478116-4478236 1.42e-02 37_[+2(3.58e-05)]_75 chr3L:11720826-11720946 1.30e-03 34_[+3(2.66e-05)]_78 chr2L:13158043-13158163 5.49e-01 120 chr3L:1859652-1859772 4.70e-04 49_[+2(5.13e-05)]_33_[+4(2.67e-05)]_\ 22 chr2R:11812331-11812451 1.15e-03 26_[+2(1.57e-05)]_35_[+5(7.47e-05)]_\ 43 chr2L:3748833-3748953 3.25e-01 11_[+2(7.57e-05)]_101 chr2L:12707569-12707689 1.22e-01 77_[+1(2.30e-05)]_35 chrX:7986693-7986813 4.67e-01 120 chr3R:14901550-14901670 2.96e-01 120 chr3L:11454586-11454706 9.27e-02 13_[+2(7.57e-05)]_99 chr3R:20898766-20898886 1.05e-01 26_[+4(1.32e-05)]_86 chr2L:17960362-17960482 1.35e-02 47_[+2(1.57e-05)]_65 chr2R:19138064-19138184 4.72e-02 24_[+2(1.57e-05)]_88 chr3R:23004313-23004433 2.81e-02 120 chr2L:8633826-8633946 4.29e-03 120 chrX:8780833-8780953 6.82e-03 41_[+4(4.33e-05)]_71 chrX:18622078-18622198 4.47e-01 120 chrX:1460636-1460756 2.65e-03 120 chrX:11388839-11388959 1.54e-02 93_[+4(4.33e-05)]_19 chr2L:18934695-18934815 6.76e-02 5_[+2(7.57e-05)]_48_[+2(3.58e-05)]_\ 51 chrX:19579829-19579949 8.80e-01 120 chr3L:329259-329379 6.04e-04 10_[+3(8.53e-06)]_102 chr2R:13957036-13957156 7.80e-01 120 chrX:13338296-13338416 4.19e-01 120 chr3R:23297226-23297346 1.02e-02 107_[+4(1.32e-05)]_5 chr2R:20888903-20889023 2.96e-01 120 chr2R:19125797-19125917 8.94e-02 29_[+2(3.58e-05)]_83 chrX:11993435-11993555 6.09e-04 34_[+1(2.30e-05)]_67_[+4(1.32e-05)]_\ 3 chr2L:11221562-11221682 2.62e-02 59_[+2(1.57e-05)]_53 chrX:2383266-2383386 1.60e-01 120 chr3L:23099551-23099671 9.31e-01 120 chr3R:23088399-23088519 5.95e-02 120 chr3R:26956507-26956627 1.61e-01 46_[+4(5.39e-05)]_66 chr3R:11338410-11338530 3.33e-03 31_[+2(1.57e-05)]_81 chrX:17842039-17842159 3.32e-02 120 chr2L:19458025-19458145 8.61e-01 120 chr2L:12076086-12076206 1.04e-01 56_[+2(1.57e-05)]_56 chr3R:25045121-25045241 5.18e-03 14_[+3(2.66e-05)]_98 chr3R:28886911-28887031 1.89e-04 88_[+4(1.32e-05)]_6_[+3(2.66e-05)]_\ 2_[+4(4.33e-05)] chr2L:2967030-2967150 4.45e-02 33_[+2(3.58e-05)]_79 chr3L:21192111-21192231 3.14e-02 36_[+2(3.58e-05)]_76 chr3R:5696509-5696629 1.99e-01 120 chrX:12947810-12947930 2.66e-02 120 chr3L:15637152-15637272 3.86e-01 120 chr2R:16230663-16230783 8.67e-01 120 chrX:17968234-17968354 1.31e-03 15_[+2(3.58e-05)]_53_[+2(7.57e-05)]_\ 18_[+4(2.67e-05)]_10 chr3L:34817-34937 1.25e-02 20_[+4(4.33e-05)]_92 chr2L:17433382-17433502 6.14e-02 120 chr3L:3466342-3466462 2.33e-02 6_[+5(4.60e-05)]_106 chr2L:19079890-19080010 1.19e-02 22_[+3(7.77e-05)]_90 chr3L:6784743-6784863 1.07e-02 79_[+4(2.67e-05)]_33 chr2R:13623533-13623653 3.13e-04 4_[+3(8.53e-06)]_34_[+4(1.32e-05)]_\ 66 chr3R:30934009-30934129 2.87e-02 50_[+2(3.58e-05)]_62 chrX:2140652-2140772 6.12e-03 13_[+5(9.41e-05)]_[+2(7.57e-05)]_91 chr3L:8968492-8968612 1.69e-05 47_[+5(3.09e-05)]_33_[+2(3.58e-05)]_\ 24 chr3R:15346082-15346202 7.98e-04 86_[+1(2.30e-05)]_7_[+5(5.83e-05)]_\ 11 chrX:13089622-13089742 2.03e-02 27_[+2(1.57e-05)]_85 chr2L:4019895-4020015 7.77e-01 120 chr2R:14141319-14141439 5.18e-01 120 chrX:2258723-2258843 1.21e-02 120 chr2R:14141118-14141238 6.45e-01 120 chr2L:8111161-8111281 1.53e-01 72_[+2(5.13e-05)]_40 chrX:5332416-5332536 7.18e-01 120 chr2R:23754295-23754415 3.29e-02 73_[+2(3.58e-05)]_39 chrX:11579003-11579123 1.08e-03 9_[+3(8.53e-06)]_55_[+5(1.18e-05)]_\ 40 chrX:7676979-7677099 1.12e-01 120 chrX:17865202-17865322 8.19e-02 75_[+4(2.67e-05)]_37 chr2L:9850928-9851048 3.59e-02 64_[+4(1.32e-05)]_48 chr2L:4227666-4227786 5.28e-04 25_[+5(2.14e-05)]_87 chr2L:7182082-7182202 9.09e-01 120 chr3L:16139247-16139367 1.01e-02 85_[+1(2.30e-05)]_27 chr3R:16643625-16643745 3.36e-02 120 chr3R:5438893-5439013 5.18e-01 120 chr2R:14661092-14661212 1.17e-01 40_[+4(7.55e-05)]_23_[+4(2.67e-05)]_\ 41 chr3R:9008369-9008489 3.43e-01 120 chr2L:4387054-4387174 3.09e-02 120 chrX:5317314-5317434 1.68e-02 120 chr3L:13005162-13005282 1.78e-01 36_[+2(5.13e-05)]_76 chr3L:20800312-20800432 1.23e-01 81_[+5(5.83e-05)]_31 chr2R:10395819-10395939 3.66e-02 120 chr3R:9543613-9543733 6.86e-01 120 chr2R:10075612-10075732 3.15e-02 46_[+3(8.53e-06)]_66 chr3R:7281558-7281678 5.45e-03 7_[+2(7.57e-05)]_31_[+2(3.58e-05)]_\ 66 chr3L:2828724-2828844 3.35e-02 66_[+4(1.32e-05)]_46 chr2L:2969602-2969722 5.12e-02 81_[+1(8.67e-05)]_31 chrX:15849183-15849303 2.78e-03 55_[+3(8.53e-06)]_57 chr3R:26056527-26056647 8.73e-02 106_[+1(2.30e-05)]_6 chrX:635699-635819 2.57e-01 120 chrX:8094030-8094150 2.70e-02 17_[+3(2.66e-05)]_95 chrX:10463168-10463288 7.42e-03 66_[+3(7.77e-05)]_46 chr3R:25687079-25687199 7.31e-02 68_[+1(4.50e-05)]_44 chr3R:10001281-10001401 1.02e-02 9_[+3(7.77e-05)]_66_[+3(8.53e-06)]_\ 29 chr2L:15249145-15249265 3.07e-02 94_[+4(1.32e-05)]_18 chr2R:9400253-9400373 1.68e-02 52_[+3(4.63e-05)]_60 chr3R:18385744-18385864 6.76e-01 120 chr3L:14262901-14263021 3.29e-02 53_[+2(5.13e-05)]_59 chr3R:25982855-25982975 1.39e-02 95_[+1(2.30e-05)]_17 chr2L:4345078-4345198 2.00e-02 31_[+2(3.58e-05)]_23_[+2(3.58e-05)]_\ 50 chr2L:6092404-6092524 1.25e-01 120 chr3L:19815878-19815998 1.88e-02 6_[+2(3.58e-05)]_106 chrX:18830489-18830609 3.09e-03 86_[+1(6.90e-05)]_18_[+1(2.30e-05)] chrX:12615921-12616041 2.23e-01 120 chr3L:22074430-22074550 4.45e-01 120 chr3R:18267789-18267909 2.52e-03 102_[+5(5.83e-05)]_10 chr2R:13506291-13506411 9.26e-01 120 chr3L:7640381-7640501 2.99e-02 82_[+3(2.66e-05)]_30 chr2L:21104470-21104590 6.01e-01 120 chrX:11797053-11797173 2.68e-04 6_[+2(5.13e-05)]_72_[+3(3.72e-05)]_\ 26 chr3R:11721076-11721196 3.92e-02 52_[+2(1.57e-05)]_60 chr3L:4367452-4367572 9.24e-01 120 chrX:22480653-22480773 1.46e-01 60_[+4(1.32e-05)]_52 chr2L:1732425-1732545 3.31e-02 21_[+2(1.57e-05)]_91 chrX:19762342-19762462 2.38e-02 120 chr3R:13063874-13063994 1.21e-01 21_[+2(5.13e-05)]_91 chrX:2275052-2275172 5.21e-03 44_[+1(6.90e-05)]_68 chr3R:27954079-27954199 2.02e-03 51_[+5(3.09e-05)]_19_[+1(4.50e-05)]_\ 34 chrX:9502421-9502541 3.72e-01 120 chr3R:22094088-22094208 9.08e-01 120 chr3R:4359719-4359839 1.82e-01 120 chr4:1084784-1084904 8.04e-03 60_[+3(7.77e-05)]_44_[+1(8.67e-05)] chr3R:25893425-25893545 1.08e-01 120 chr3R:5794410-5794530 7.70e-01 120 chrX:5754935-5755055 1.27e-02 54_[+3(7.77e-05)]_25_[+1(4.50e-05)]_\ 25 chrX:9600934-9601054 9.93e-04 77_[+1(2.30e-05)]_21_[+1(2.30e-05)]_\ 6 chrX:14841979-14842099 1.68e-03 16_[+4(5.39e-05)]_96 chr3R:21263274-21263394 1.82e-02 53_[+2(7.57e-05)]_59 chr3L:20769506-20769626 1.78e-01 120 chrX:16321186-16321306 7.30e-02 55_[+4(2.67e-05)]_57 chrX:11124768-11124888 6.82e-01 120 chrX:15328282-15328402 2.30e-04 7_[+1(2.30e-05)]_9_[+3(7.77e-05)]_\ 88 chr2R:20262822-20262942 1.04e-02 80_[+1(2.30e-05)]_32 chrX:6674315-6674435 2.14e-01 51_[+3(7.77e-05)]_61 chr3R:7892419-7892539 5.98e-01 120 chr3R:13802316-13802436 2.85e-02 51_[+2(1.57e-05)]_61 chrX:16803346-16803466 2.41e-01 120 chr3R:21179772-21179892 3.33e-01 120 chr3L:329466-329586 7.16e-01 120 chrX:16786984-16787104 2.57e-02 120 chr2R:11219255-11219375 8.34e-02 20_[+5(1.18e-05)]_92 chr2L:8126950-8127070 3.57e-02 29_[+1(8.67e-05)]_83 chrX:4104222-4104342 1.06e-01 120 chr3L:3905273-3905393 4.42e-03 120 chr2R:9291683-9291803 4.20e-01 120 chrX:17856631-17856751 2.95e-01 120 chr2R:12686135-12686255 2.80e-04 64_[+5(4.60e-05)]_8_[+1(2.30e-05)]_\ 32 chr3L:20792852-20792972 2.25e-02 65_[+4(2.67e-05)]_47 chr3L:1748429-1748549 1.44e-01 120 chr3L:8121739-8121859 3.88e-02 18_[+1(2.30e-05)]_94 chr3R:22035609-22035729 2.34e-03 55_[+5(1.18e-05)]_29_[+1(2.30e-05)]_\ 20 chr3R:31086484-31086604 3.13e-01 120 chrX:23007604-23007724 3.11e-02 10_[+1(6.90e-05)]_102 chrX:13736232-13736352 1.04e-01 36_[+1(6.90e-05)]_1_[+1(8.67e-05)]_\ 67 chr3L:18088186-18088306 1.93e-01 104_[+2(3.58e-05)]_8 chr2R:18128351-18128471 3.11e-03 55_[+1(4.50e-05)]_57 chr2L:18682002-18682122 1.48e-01 45_[+3(2.66e-05)]_67 chr3R:9003916-9004036 1.15e-03 68_[+3(3.72e-05)]_24_[+1(2.30e-05)]_\ 12 chr3R:16651089-16651209 8.94e-02 77_[+1(2.30e-05)]_35 chr3L:8986658-8986778 8.75e-04 77_[+5(1.18e-05)]_35 chrX:7679000-7679120 3.65e-01 120 chr4:834972-835092 1.80e-02 120 chr3L:7243878-7243998 9.43e-02 91_[+5(4.60e-05)]_21 chr2L:22538179-22538299 4.93e-02 107_[+5(6.73e-05)]_5 chrX:1695880-1696000 1.84e-02 81_[+1(2.30e-05)]_31 chr2R:20287058-20287178 6.45e-02 14_[+3(2.66e-05)]_98 chr3R:15485939-15486059 7.22e-04 48_[+5(5.83e-05)]_19_[+3(2.66e-05)]_\ 37 chr3L:8175930-8176050 7.04e-02 71_[+3(7.77e-05)]_41 chr3R:17733477-17733597 9.58e-01 120 chr2L:13793443-13793563 8.83e-03 100_[+5(1.18e-05)]_12 chr3R:20816130-20816250 5.32e-03 53_[+3(2.66e-05)]_19_[+1(2.30e-05)]_\ 32 chr2R:23357390-23357510 5.78e-03 28_[+5(3.09e-05)]_84 chr4:1231782-1231902 7.26e-02 72_[+1(2.30e-05)]_40 chrX:3173182-3173302 6.32e-01 120 chr2L:2383063-2383183 1.67e-02 44_[+3(2.66e-05)]_68 chrX:8177131-8177251 1.90e-01 120 chr3L:1576524-1576644 5.50e-01 120 chr3R:21130130-21130250 1.60e-02 46_[+3(2.66e-05)]_66 chr3R:21214700-21214820 3.46e-01 120 chr2L:10004721-10004841 1.93e-01 120 chr2L:6833931-6834051 9.12e-03 54_[+2(3.58e-05)]_58 chr3L:174607-174727 1.75e-01 82_[+1(2.30e-05)]_2_[+1(6.90e-05)]_\ 20 chrX:9089382-9089502 2.16e-03 108_[+1(2.30e-05)]_4 chr2L:6622749-6622869 2.33e-01 120 chrX:15482314-15482434 1.81e-03 7_[+1(2.30e-05)]_14_[+5(2.14e-05)]_\ 83 chrX:20165898-20166018 3.26e-01 120 chr2L:9330662-9330782 6.63e-02 112_[+5(1.18e-05)] chr3R:25476908-25477028 2.72e-02 17_[+1(2.30e-05)]_27_[+1(2.30e-05)]_\ 60 chr3L:3225461-3225581 7.83e-02 120 chrX:8251761-8251881 2.60e-01 120 chr3R:24360064-24360184 3.08e-02 60_[+3(2.66e-05)]_52 chr3R:23933820-23933940 1.43e-02 91_[+5(1.18e-05)]_21 chr3L:648346-648466 1.13e-02 22_[+5(9.41e-05)]_20_[+1(2.30e-05)]_\ 62 chr3R:20621826-20621946 7.09e-01 120 chrX:15785542-15785662 1.98e-02 120 chr3R:16640054-16640174 3.77e-02 84_[+1(4.50e-05)]_28 chr3R:16305257-16305377 3.66e-02 120 chr2R:10821573-10821693 2.34e-02 39_[+1(2.30e-05)]_73 chr2R:17581484-17581604 1.60e-03 36_[+3(7.77e-05)]_60_[+5(1.18e-05)]_\ 8 chr3L:328019-328139 1.81e-03 13_[+1(2.30e-05)]_39_[+5(1.18e-05)]_\ 52 chr2R:24187529-24187649 2.88e-01 120 chrX:16073501-16073621 2.08e-02 14_[+1(2.30e-05)]_21_[+1(2.30e-05)]_\ 69 chr3R:25221504-25221624 2.55e-02 19_[+1(2.30e-05)]_85_[+1(6.90e-05)] chr3L:21131503-21131623 7.16e-02 111_[+3(2.66e-05)]_1 chrX:17305667-17305787 9.82e-02 86_[+5(5.83e-05)]_26 chr3R:26964906-26965026 6.62e-01 120 chr3L:5749777-5749897 7.76e-02 52_[+3(3.72e-05)]_60 chr3R:20309026-20309146 9.18e-01 120 chrX:16448505-16448625 9.84e-03 5_[+1(6.90e-05)]_107 chr3R:11750059-11750179 1.37e-02 84_[+5(2.14e-05)]_28 chrX:2585858-2585978 2.44e-02 90_[+5(2.14e-05)]_22 chr2L:12093664-12093784 2.63e-02 36_[+5(6.73e-05)]_76 chr3L:5662201-5662321 7.08e-02 29_[+1(2.30e-05)]_30_[+1(8.67e-05)]_\ 45 chr2R:9060128-9060248 4.01e-02 16_[+2(7.57e-05)]_96 chrX:11359122-11359242 4.17e-02 53_[+1(6.90e-05)]_59 chrX:10385818-10385938 4.91e-02 82_[+1(2.30e-05)]_30 chr3R:25245531-25245651 8.23e-01 120 chr3L:10734644-10734764 1.23e-01 39_[+2(3.58e-05)]_73 chr3L:19642739-19642859 2.44e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************