******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Ets96B.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:7598883-7599003 1.0000 120 chr3L:6391496-6391616 1.0000 120 chr2R:14076221-14076341 1.0000 120 chr3R:29506715-29506835 1.0000 120 chr3L:10757091-10757211 1.0000 120 chr3L:15229588-15229708 1.0000 120 chr2R:17499286-17499406 1.0000 120 chr3L:12099737-12099857 1.0000 120 chr2R:7848705-7848825 1.0000 120 chr3L:766440-766560 1.0000 120 chrX:17537417-17537537 1.0000 120 chr3L:3644476-3644596 1.0000 120 chr3L:17579167-17579287 1.0000 120 chr2R:19968852-19968972 1.0000 120 chr3R:14373947-14374067 1.0000 120 chr3L:16259648-16259768 1.0000 120 chr2R:18746944-18747064 1.0000 120 chr3L:20990385-20990505 1.0000 120 chr2R:8995105-8995225 1.0000 120 chr2L:15909437-15909557 1.0000 120 chr3L:16174939-16175059 1.0000 120 chr2R:21847823-21847943 1.0000 120 chr2L:14529388-14529508 1.0000 120 chr2L:2485428-2485548 1.0000 120 chr3L:16208624-16208744 1.0000 120 chr2L:15390590-15390710 1.0000 120 chr3R:30259722-30259842 1.0000 120 chrX:5020145-5020265 1.0000 120 chr3R:14673080-14673200 1.0000 120 chr3L:8822364-8822484 1.0000 120 chr2L:3557620-3557740 1.0000 120 chr2R:21799426-21799546 1.0000 120 chr3L:19055189-19055309 1.0000 120 chr2L:7997836-7997956 1.0000 120 chr3L:1693031-1693151 1.0000 120 chr3R:29291015-29291135 1.0000 120 chr3L:10923086-10923206 1.0000 120 chr3R:10533299-10533419 1.0000 120 chr3R:5052996-5053116 1.0000 120 chr2L:1459456-1459576 1.0000 120 chr3R:24953282-24953402 1.0000 120 chr2L:3582838-3582958 1.0000 120 chr3R:29091707-29091827 1.0000 120 chr2L:5751594-5751714 1.0000 120 chr2L:5567219-5567339 1.0000 120 chr2L:20146356-20146476 1.0000 120 chrX:19485202-19485322 1.0000 120 chr2R:19149890-19150010 1.0000 120 chr3L:21042090-21042210 1.0000 120 chr3L:15005877-15005997 1.0000 120 chr3L:5941711-5941831 1.0000 120 chr2L:14413511-14413631 1.0000 120 chr3L:10964127-10964247 1.0000 120 chr2R:14929627-14929747 1.0000 120 chr2L:5479294-5479414 1.0000 120 chr3R:30265005-30265125 1.0000 120 chr3R:10829902-10830022 1.0000 120 chr2R:19964394-19964514 1.0000 120 chr2R:12767360-12767480 1.0000 120 chr3R:29570387-29570507 1.0000 120 chrX:379632-379752 1.0000 120 chr2L:13146391-13146511 1.0000 120 chr3L:4749283-4749403 1.0000 120 chr2L:723929-724049 1.0000 120 chr3R:16541992-16542112 1.0000 120 chr3L:5945714-5945834 1.0000 120 chr2L:3583548-3583668 1.0000 120 chr3R:8958442-8958562 1.0000 120 chr4:829973-830093 1.0000 120 chr2L:15386858-15386978 1.0000 120 chrX:6004008-6004128 1.0000 120 chr3L:4747597-4747717 1.0000 120 chr3R:18469580-18469700 1.0000 120 chr3L:15013409-15013529 1.0000 120 chr2L:10673202-10673322 1.0000 120 chr2L:3562552-3562672 1.0000 120 chr3L:16168195-16168315 1.0000 120 chr3R:8445582-8445702 1.0000 120 chr3L:13178367-13178487 1.0000 120 chr3R:19074395-19074515 1.0000 120 chrX:14017551-14017671 1.0000 120 chr2L:721902-722022 1.0000 120 chr3R:21649598-21649718 1.0000 120 chr3L:15220514-15220634 1.0000 120 chr3L:3442191-3442311 1.0000 120 chrX:5696196-5696316 1.0000 120 chr3L:21243524-21243644 1.0000 120 chr2R:16778125-16778245 1.0000 120 chr3L:22130355-22130475 1.0000 120 chr3L:4383237-4383357 1.0000 120 chr3L:21720995-21721115 1.0000 120 chr2L:15396969-15397089 1.0000 120 chr3R:31503838-31503958 1.0000 120 chr2L:2432955-2433075 1.0000 120 chr3R:7953153-7953273 1.0000 120 chr3L:13109484-13109604 1.0000 120 chr2L:13893633-13893753 1.0000 120 chr2R:18926581-18926701 1.0000 120 chr3R:27222121-27222241 1.0000 120 chrX:7540874-7540994 1.0000 120 chr3L:71271-71391 1.0000 120 chr2L:21006707-21006827 1.0000 120 chr3L:2582445-2582565 1.0000 120 chrX:14098427-14098547 1.0000 120 chr3R:28914210-28914330 1.0000 120 chrX:9467188-9467308 1.0000 120 chr2L:1387955-1388075 1.0000 120 chr2L:9981961-9982081 1.0000 120 chr3R:14847993-14848113 1.0000 120 chr2L:7897401-7897521 1.0000 120 chrX:7222257-7222377 1.0000 120 chr3L:20632479-20632599 1.0000 120 chr2R:15100636-15100756 1.0000 120 chr3R:27179151-27179271 1.0000 120 chr3L:17926719-17926839 1.0000 120 chr2L:8585162-8585282 1.0000 120 chr3R:24970827-24970947 1.0000 120 chr3L:6458869-6458989 1.0000 120 chr2L:5372674-5372794 1.0000 120 chr3R:27084753-27084873 1.0000 120 chr3R:15631053-15631173 1.0000 120 chr3L:14350279-14350399 1.0000 120 chr2L:16590843-16590963 1.0000 120 chr3L:11634668-11634788 1.0000 120 chr3R:6954650-6954770 1.0000 120 chr3L:19035618-19035738 1.0000 120 chr3R:23878417-23878537 1.0000 120 chr2L:8855612-8855732 1.0000 120 chr3L:3073602-3073722 1.0000 120 chr2R:18271192-18271312 1.0000 120 chr3L:8860046-8860166 1.0000 120 chr2L:19574578-19574698 1.0000 120 chr3L:10562354-10562474 1.0000 120 chr2L:11052520-11052640 1.0000 120 chr3R:18998506-18998626 1.0000 120 chr3L:15174234-15174354 1.0000 120 chr3L:20592709-20592829 1.0000 120 chr3L:1064506-1064626 1.0000 120 chrX:17726123-17726243 1.0000 120 chr2L:646663-646783 1.0000 120 chr3R:8811009-8811129 1.0000 120 chr2R:18879214-18879334 1.0000 120 chr3L:10365026-10365146 1.0000 120 chr3L:11373949-11374069 1.0000 120 chrX:9656508-9656628 1.0000 120 chr2R:15063811-15063931 1.0000 120 chr2L:1409814-1409934 1.0000 120 chr2L:18003150-18003270 1.0000 120 chr3R:30843232-30843352 1.0000 120 chr2R:11749569-11749689 1.0000 120 chrX:21127380-21127500 1.0000 120 chr2L:17750264-17750384 1.0000 120 chr3L:18243280-18243400 1.0000 120 chr3L:2867006-2867126 1.0000 120 chr2L:5288411-5288531 1.0000 120 chr3R:30843881-30844001 1.0000 120 chrX:4442624-4442744 1.0000 120 chr2L:7323076-7323196 1.0000 120 chr3R:22140216-22140336 1.0000 120 chr3R:10466395-10466515 1.0000 120 chr2L:5290044-5290164 1.0000 120 chr3L:14610630-14610750 1.0000 120 chr2L:20916931-20917051 1.0000 120 chrX:6028019-6028139 1.0000 120 chr2R:15000504-15000624 1.0000 120 chr3L:20952222-20952342 1.0000 120 chr2R:18304624-18304744 1.0000 120 chr2L:4028113-4028233 1.0000 120 chr2R:19617341-19617461 1.0000 120 chr3R:14691610-14691730 1.0000 120 chr3R:5331873-5331993 1.0000 120 chr2R:10057962-10058082 1.0000 120 chrX:7558768-7558888 1.0000 120 chr2R:10656093-10656213 1.0000 120 chrX:7535016-7535136 1.0000 120 chrX:8215643-8215763 1.0000 120 chr2L:7899287-7899407 1.0000 120 chr3L:2800412-2800532 1.0000 120 chrX:12507714-12507834 1.0000 120 chr3L:3338987-3339107 1.0000 120 chr3L:20635705-20635825 1.0000 120 chr2L:16591522-16591642 1.0000 120 chr3L:776368-776488 1.0000 120 chr3L:7611385-7611505 1.0000 120 chr3R:14421941-14422061 1.0000 120 chr2L:11069638-11069758 1.0000 120 chrX:3867190-3867310 1.0000 120 chr3L:10387679-10387799 1.0000 120 chr2L:21005570-21005690 1.0000 120 chr3L:20582516-20582636 1.0000 120 chr3R:14684094-14684214 1.0000 120 chr3R:18787357-18787477 1.0000 120 chr3R:31963260-31963380 1.0000 120 chr3L:12915574-12915694 1.0000 120 chr2L:18523132-18523252 1.0000 120 chr2L:1456994-1457114 1.0000 120 chr3L:21253069-21253189 1.0000 120 chr2R:9498748-9498868 1.0000 120 chr3R:29279712-29279832 1.0000 120 chr2R:8307919-8308039 1.0000 120 chr2L:7541474-7541594 1.0000 120 chr3R:26832011-26832131 1.0000 120 chr3R:29280768-29280888 1.0000 120 chr3L:21738539-21738659 1.0000 120 chr3L:15180971-15181091 1.0000 120 chr3L:15264753-15264873 1.0000 120 chr3R:27205115-27205235 1.0000 120 chrX:21044575-21044695 1.0000 120 chr2L:15385549-15385669 1.0000 120 chr2R:8143511-8143631 1.0000 120 chr3R:11869867-11869987 1.0000 120 chr3R:10455049-10455169 1.0000 120 chr3R:26019358-26019478 1.0000 120 chr3R:26496484-26496604 1.0000 120 chr3L:9462933-9463053 1.0000 120 chrX:10581633-10581753 1.0000 120 chr3L:18079657-18079777 1.0000 120 chrX:2336624-2336744 1.0000 120 chr2L:7911456-7911576 1.0000 120 chr3L:16762313-16762433 1.0000 120 chr2L:18122285-18122405 1.0000 120 chr3R:9966252-9966372 1.0000 120 chrX:7537942-7538062 1.0000 120 chr3L:2117163-2117283 1.0000 120 chr3R:21826197-21826317 1.0000 120 chr3R:21935339-21935459 1.0000 120 chr2R:22529752-22529872 1.0000 120 chr2R:16836464-16836584 1.0000 120 chr3L:12030676-12030796 1.0000 120 chr3R:29847283-29847403 1.0000 120 chr3R:22184201-22184321 1.0000 120 chr3L:13212987-13213107 1.0000 120 chr2R:18907113-18907233 1.0000 120 chr2L:7199675-7199795 1.0000 120 chr3R:24549896-24550016 1.0000 120 chr2L:11386549-11386669 1.0000 120 chr2L:2162742-2162862 1.0000 120 chr3R:29300168-29300288 1.0000 120 chr3R:31312418-31312538 1.0000 120 chr3L:21122642-21122762 1.0000 120 chr2R:10558247-10558367 1.0000 120 chr3R:7646294-7646414 1.0000 120 chr3L:17577001-17577121 1.0000 120 chr3R:13846059-13846179 1.0000 120 chr2R:16212955-16213075 1.0000 120 chr2L:609646-609766 1.0000 120 chr3L:3444372-3444492 1.0000 120 chr2R:10559960-10560080 1.0000 120 chr2L:18566791-18566911 1.0000 120 chrX:9068917-9069037 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Ets96B/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Ets96B.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.361 C 0.139 G 0.14 T 0.36 Background letter frequencies (from file dataset with add-one prior applied): A 0.361 C 0.139 G 0.14 T 0.36 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCCCAGTG MEME-1 width = 8 sites = 13 llr = 138 E-value = 6.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCAGTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C 997a:112 probability G 1::::916 matrix T :13:::82 bits 2.8 * 2.6 * * * 2.3 ** * * 2.0 ** * * Relative 1.7 ** * * Entropy 1.4 ****** * (15.3 bits) 1.1 ****** * 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCCCAGTG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCAGTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:18998506-18998626 106 9.51e-07 GATTCGTTTT CCCCAGTG TATCCGT chr3L:1693031-1693151 101 1.89e-06 TTAGGGTATT CCCCAGTC GACTTGATCT chr2L:7911456-7911576 84 2.63e-06 TTTTATGATG CCCCAGGG CCAATAGAAA chr2L:18566791-18566911 30 5.09e-06 AATACAATAG CCTCAGTG GTTGTATAAT chr2R:8307919-8308039 15 5.09e-06 ATAAAGGCAT CCTCAGTG TCCAAAATCA chr3R:19074395-19074515 105 5.09e-06 CAAAATTTTC CCTCAGTG CATTGAAG chr3R:14684094-14684214 43 7.54e-06 ATAAATATTC CCCCAGTT TACTCATTTC chr2L:3582838-3582958 80 7.54e-06 GAAGAGAACT CCCCAGTT ATGAACAGAT chr2L:19574578-19574698 108 1.02e-05 CTTTTAATTG CCCCACTG TATGA chr2L:723929-724049 21 1.02e-05 CATTTACTCT GCCCAGTG GATTAGGGAT chr3L:766440-766560 74 1.02e-05 CTAACCCCCA CCCCAGCC ACTTGTAAAT chr2R:16778125-16778245 18 1.26e-05 CCTAACAGAA CCTCAGTC GCATTTTTCA chr3L:8822364-8822484 101 1.70e-05 GAAAGGAGGA CTCCAGTG TTATTTGGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCAGTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:18998506-18998626 9.5e-07 105_[+1]_7 chr3L:1693031-1693151 1.9e-06 100_[+1]_12 chr2L:7911456-7911576 2.6e-06 83_[+1]_29 chr2L:18566791-18566911 5.1e-06 29_[+1]_83 chr2R:8307919-8308039 5.1e-06 14_[+1]_98 chr3R:19074395-19074515 5.1e-06 104_[+1]_8 chr3R:14684094-14684214 7.5e-06 42_[+1]_70 chr2L:3582838-3582958 7.5e-06 79_[+1]_33 chr2L:19574578-19574698 1e-05 107_[+1]_5 chr2L:723929-724049 1e-05 20_[+1]_92 chr3L:766440-766560 1e-05 73_[+1]_39 chr2R:16778125-16778245 1.3e-05 17_[+1]_95 chr3L:8822364-8822484 1.7e-05 100_[+1]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCAGTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCAGTG width=8 seqs=13 chr3R:18998506-18998626 ( 106) CCCCAGTG 1 chr3L:1693031-1693151 ( 101) CCCCAGTC 1 chr2L:7911456-7911576 ( 84) CCCCAGGG 1 chr2L:18566791-18566911 ( 30) CCTCAGTG 1 chr2R:8307919-8308039 ( 15) CCTCAGTG 1 chr3R:19074395-19074515 ( 105) CCTCAGTG 1 chr3R:14684094-14684214 ( 43) CCCCAGTT 1 chr2L:3582838-3582958 ( 80) CCCCAGTT 1 chr2L:19574578-19574698 ( 108) CCCCACTG 1 chr2L:723929-724049 ( 21) GCCCAGTG 1 chr3L:766440-766560 ( 74) CCCCAGCC 1 chr2R:16778125-16778245 ( 18) CCTCAGTC 1 chr3L:8822364-8822484 ( 101) CTCCAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCAGTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6156 E= 6.0e+000 -1035 273 -86 -1035 -1035 273 -1035 -222 -1035 231 -1035 -23 -1035 284 -1035 -1035 147 -1035 -1035 -1035 -1035 -86 272 -1035 -1035 -86 -86 123 -1035 73 214 -123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCAGTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 6.0e+000 0.000000 0.923077 0.076923 0.000000 0.000000 0.923077 0.000000 0.076923 0.000000 0.692308 0.000000 0.307692 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.076923 0.923077 0.000000 0.000000 0.076923 0.076923 0.846154 0.000000 0.230769 0.615385 0.153846 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCAGTG MEME-1 regular expression -------------------------------------------------------------------------------- CC[CT]CAGT[GC] -------------------------------------------------------------------------------- Time 7.46 secs. ******************************************************************************** ******************************************************************************** MOTIF GSTGCACT MEME-2 width = 8 sites = 9 llr = 97 E-value = 2.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSTGCACT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C :31:a:9: probability G 96:a::1: matrix T 119::::a bits 2.8 ** 2.6 ** 2.3 * ** * 2.0 * ** * Relative 1.7 * ** * Entropy 1.4 ** ***** (15.6 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GGTGCACT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSTGCACT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:2800412-2800532 84 2.48e-06 ATTTTCCTCA GGTGCACT GAAATCACCA chr2L:7323076-7323196 4 2.48e-06 AGC GGTGCACT GAGCGAAAGA chr2L:1387955-1388075 52 2.48e-06 GAGAAGTGAA GGTGCACT AACTAAATAT chr2L:20916931-20917051 76 4.94e-06 tttctgattt gctgcact tgttcttttt chr3R:22140216-22140336 2 4.94e-06 C GCTGCACT TTTTCTTCAT chr3R:24953282-24953402 32 6.85e-06 TTGGTATCAT GCCGCACT ATAAAACTCA chr3R:23878417-23878537 106 9.35e-06 AAGTGTGATA GGTGCAGT TATTCTT chr3R:14847993-14848113 58 1.82e-05 TGACATGAGA GTTGCACT GATCTTCCCT chr2L:7598883-7599003 95 2.46e-05 TTTTTCTCCC TGTGCACT CTCGATTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSTGCACT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:2800412-2800532 2.5e-06 83_[+2]_29 chr2L:7323076-7323196 2.5e-06 3_[+2]_109 chr2L:1387955-1388075 2.5e-06 51_[+2]_61 chr2L:20916931-20917051 4.9e-06 75_[+2]_37 chr3R:22140216-22140336 4.9e-06 1_[+2]_111 chr3R:24953282-24953402 6.9e-06 31_[+2]_81 chr3R:23878417-23878537 9.3e-06 105_[+2]_7 chr3R:14847993-14848113 1.8e-05 57_[+2]_55 chr2L:7598883-7599003 2.5e-05 94_[+2]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSTGCACT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSTGCACT width=8 seqs=9 chr3L:2800412-2800532 ( 84) GGTGCACT 1 chr2L:7323076-7323196 ( 4) GGTGCACT 1 chr2L:1387955-1388075 ( 52) GGTGCACT 1 chr2L:20916931-20917051 ( 76) GCTGCACT 1 chr3R:22140216-22140336 ( 2) GCTGCACT 1 chr3R:24953282-24953402 ( 32) GCCGCACT 1 chr3R:23878417-23878537 ( 106) GGTGCAGT 1 chr3R:14847993-14848113 ( 58) GTTGCACT 1 chr2L:7598883-7599003 ( 95) TGTGCACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSTGCACT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 2.3e+004 -982 -982 267 -169 -982 126 199 -169 -982 -33 -982 130 -982 -982 284 -982 -982 284 -982 -982 147 -982 -982 -982 -982 267 -33 -982 -982 -982 -982 147 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSTGCACT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.3e+004 0.000000 0.000000 0.888889 0.111111 0.000000 0.333333 0.555556 0.111111 0.000000 0.111111 0.000000 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSTGCACT MEME-2 regular expression -------------------------------------------------------------------------------- G[GC]TGCACT -------------------------------------------------------------------------------- Time 13.66 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGSCCCC MEME-3 width = 8 sites = 2 llr = 28 E-value = 3.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGSCCCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C a::5aaaa probability G ::a5:::: matrix T :::::::: bits 2.8 * * **** 2.6 * * **** 2.3 * * **** 2.0 * * **** Relative 1.7 * ****** Entropy 1.4 ******** (20.4 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CAGCCCCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCCCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9462933-9463053 41 7.32e-07 GGCAAAAAGA CAGGCCCC AAAAGAGACC chr3R:30265005-30265125 26 7.32e-07 ATCAACGCGT CAGCCCCC TTACACTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCCCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9462933-9463053 7.3e-07 40_[+3]_72 chr3R:30265005-30265125 7.3e-07 25_[+3]_87 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCCCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGSCCCC width=8 seqs=2 chr3L:9462933-9463053 ( 41) CAGGCCCC 1 chr3R:30265005-30265125 ( 26) CAGCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCCCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 3.6e+004 -765 284 -765 -765 147 -765 -765 -765 -765 -765 283 -765 -765 184 183 -765 -765 284 -765 -765 -765 284 -765 -765 -765 284 -765 -765 -765 284 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCCCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.6e+004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSCCCC MEME-3 regular expression -------------------------------------------------------------------------------- CAG[CG]CCCC -------------------------------------------------------------------------------- Time 19.87 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGTTGG MEME-4 width = 8 sites = 9 llr = 99 E-value = 3.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGTTGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a:1::: pos.-specific C :a:21::2 probability G a::8:3a8 matrix T ::::87:: bits 2.8 ** * 2.6 ** * 2.3 ** * 2.0 ** * ** Relative 1.7 ** * ** Entropy 1.4 **** ** (15.8 bits) 1.1 **** *** 0.9 **** *** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCAGTTGG consensus C G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTTGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:17750264-17750384 9 9.72e-07 AGTGGCAA GCAGTGGG CTAAAATCGT chr2L:1409814-1409934 76 3.47e-06 TCATAGAACC GCAGTTGG TTAAAGCACT chr3L:15174234-15174354 99 3.47e-06 ATGCTGAAAA GCAGTTGG ATTTATACAT chr2L:11386549-11386669 31 4.81e-06 ATAAATATTT GCAGCTGG CAGTAAGAGT chr3R:29300168-29300288 6 6.74e-06 TAAGA GCACTGGG AAAAAAAGGG chr3L:21042090-21042210 39 6.74e-06 ACTGCTAATT GCACTGGG AAAAATGATG chr3R:31963260-31963380 83 1.17e-05 ATCATATTTT GCAGTTGC ACGGTTTGAG chr2R:18926581-18926701 51 1.17e-05 CTTCTAACAT GCAGTTGC CCTCTAAATA chr3L:20635705-20635825 36 1.52e-05 AGTTTCATTT GCAGATGG TCGAAATGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTTGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:17750264-17750384 9.7e-07 8_[+4]_104 chr2L:1409814-1409934 3.5e-06 75_[+4]_37 chr3L:15174234-15174354 3.5e-06 98_[+4]_14 chr2L:11386549-11386669 4.8e-06 30_[+4]_82 chr3R:29300168-29300288 6.7e-06 5_[+4]_107 chr3L:21042090-21042210 6.7e-06 38_[+4]_74 chr3R:31963260-31963380 1.2e-05 82_[+4]_30 chr2R:18926581-18926701 1.2e-05 50_[+4]_62 chr3L:20635705-20635825 1.5e-05 35_[+4]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTTGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGTTGG width=8 seqs=9 chr2L:17750264-17750384 ( 9) GCAGTGGG 1 chr2L:1409814-1409934 ( 76) GCAGTTGG 1 chr3L:15174234-15174354 ( 99) GCAGTTGG 1 chr2L:11386549-11386669 ( 31) GCAGCTGG 1 chr3R:29300168-29300288 ( 6) GCACTGGG 1 chr3L:21042090-21042210 ( 39) GCACTGGG 1 chr3R:31963260-31963380 ( 83) GCAGTTGC 1 chr2R:18926581-18926701 ( 51) GCAGTTGC 1 chr3L:20635705-20635825 ( 36) GCAGATGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTTGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 3.7e+004 -982 -982 284 -982 -982 284 -982 -982 147 -982 -982 -982 -982 67 247 -982 -170 -33 -982 111 -982 -982 125 89 -982 -982 284 -982 -982 67 247 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTTGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 3.7e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.222222 0.777778 0.000000 0.111111 0.111111 0.000000 0.777778 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.222222 0.777778 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTTGG MEME-4 regular expression -------------------------------------------------------------------------------- GCA[GC]T[TG]G[GC] -------------------------------------------------------------------------------- Time 26.11 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGAGGY MEME-5 width = 8 sites = 7 llr = 79 E-value = 4.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGAGGY MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::31a::1 pos.-specific C ::::::14 probability G aa79:a91 matrix T :::::::3 bits 2.8 ** * 2.6 ** * 2.3 ** ** 2.0 ** * ** Relative 1.7 **** ** Entropy 1.4 ******* (16.3 bits) 1.1 ******* 0.9 ******* 0.6 ******* 0.3 ******** 0.0 -------- Multilevel GGGGAGGC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGY MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:29506715-29506835 79 3.78e-07 CTACATTTAT GGGGAGGC ATATAAAATC chr3R:10466395-10466515 100 1.74e-06 TAACCAATAT GGGGAGGT ATTTTTTTAA chrX:7537942-7538062 67 3.09e-06 AGTGTGGACG GGAGAGGC ATGCTAAGta chr2L:15396969-15397089 25 4.07e-06 ATTAAAGTTA GGGGAGGA TGAAGTAAAA chr3L:21738539-21738659 53 5.04e-06 CGTATATCAA GGGAAGGC AAATAAAAAG chr3L:10387679-10387799 48 6.40e-06 ATGGGCCAAC GGAGAGGG AACACTGAGA chr2L:2162742-2162862 24 7.37e-06 ATGAAGAGTT GGGGAGCT TGGAGAGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGY MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29506715-29506835 3.8e-07 78_[+5]_34 chr3R:10466395-10466515 1.7e-06 99_[+5]_13 chrX:7537942-7538062 3.1e-06 66_[+5]_46 chr2L:15396969-15397089 4.1e-06 24_[+5]_88 chr3L:21738539-21738659 5e-06 52_[+5]_60 chr3L:10387679-10387799 6.4e-06 47_[+5]_65 chr2L:2162742-2162862 7.4e-06 23_[+5]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGY MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGAGGY width=8 seqs=7 chr3R:29506715-29506835 ( 79) GGGGAGGC 1 chr3R:10466395-10466515 ( 100) GGGGAGGT 1 chrX:7537942-7538062 ( 67) GGAGAGGC 1 chr2L:15396969-15397089 ( 25) GGGGAGGA 1 chr3L:21738539-21738659 ( 53) GGGAAGGC 1 chr3L:10387679-10387799 ( 48) GGAGAGGG 1 chr2L:2162742-2162862 ( 24) GGGGAGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGY MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 4.4e+004 -945 -945 284 -945 -945 -945 284 -945 -34 -945 235 -945 -133 -945 261 -945 147 -945 -945 -945 -945 -945 284 -945 -945 4 261 -945 -133 162 3 -33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGY MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.4e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.285714 0.000000 0.714286 0.000000 0.142857 0.000000 0.857143 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.142857 0.428571 0.142857 0.285714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGY MEME-5 regular expression -------------------------------------------------------------------------------- GG[GA]GAGG[CT] -------------------------------------------------------------------------------- Time 32.34 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7598883-7599003 1.26e-02 94_[+2(2.46e-05)]_18 chr3L:6391496-6391616 1.74e-01 120 chr2R:14076221-14076341 6.71e-01 120 chr3R:29506715-29506835 1.96e-03 78_[+5(3.78e-07)]_34 chr3L:10757091-10757211 7.05e-01 120 chr3L:15229588-15229708 3.77e-01 120 chr2R:17499286-17499406 4.01e-01 120 chr3L:12099737-12099857 3.35e-01 120 chr2R:7848705-7848825 5.99e-01 120 chr3L:766440-766560 1.40e-02 73_[+1(1.02e-05)]_39 chrX:17537417-17537537 1.81e-01 120 chr3L:3644476-3644596 3.86e-01 120 chr3L:17579167-17579287 4.13e-01 120 chr2R:19968852-19968972 5.75e-01 120 chr3R:14373947-14374067 9.24e-01 120 chr3L:16259648-16259768 1.00e+00 120 chr2R:18746944-18747064 9.92e-02 120 chr3L:20990385-20990505 9.15e-01 120 chr2R:8995105-8995225 8.29e-01 120 chr2L:15909437-15909557 2.33e-01 120 chr3L:16174939-16175059 7.52e-01 120 chr2R:21847823-21847943 5.96e-01 120 chr2L:14529388-14529508 8.20e-02 120 chr2L:2485428-2485548 4.15e-02 100_[+1(8.02e-05)]_12 chr3L:16208624-16208744 9.89e-01 120 chr2L:15390590-15390710 9.74e-01 120 chr3R:30259722-30259842 8.59e-01 120 chrX:5020145-5020265 8.12e-01 120 chr3R:14673080-14673200 7.55e-01 120 chr3L:8822364-8822484 4.28e-03 100_[+1(1.70e-05)]_12 chr2L:3557620-3557740 1.01e-01 120 chr2R:21799426-21799546 9.58e-01 120 chr3L:19055189-19055309 3.13e-02 120 chr2L:7997836-7997956 3.49e-01 120 chr3L:1693031-1693151 4.37e-03 100_[+1(1.89e-06)]_12 chr3R:29291015-29291135 9.73e-01 120 chr3L:10923086-10923206 9.67e-01 120 chr3R:10533299-10533419 9.13e-01 120 chr3R:5052996-5053116 6.10e-01 120 chr2L:1459456-1459576 1.00e+00 120 chr3R:24953282-24953402 1.78e-02 31_[+2(6.85e-06)]_81 chr2L:3582838-3582958 1.18e-02 79_[+1(7.54e-06)]_33 chr3R:29091707-29091827 4.11e-01 120 chr2L:5751594-5751714 8.07e-01 120 chr2L:5567219-5567339 9.85e-01 120 chr2L:20146356-20146476 5.52e-02 3_[+4(8.10e-05)]_109 chrX:19485202-19485322 8.20e-01 120 chr2R:19149890-19150010 9.41e-01 120 chr3L:21042090-21042210 8.85e-06 38_[+4(6.74e-06)]_51_[+5(2.74e-05)]_\ 15 chr3L:15005877-15005997 9.05e-01 120 chr3L:5941711-5941831 4.69e-02 73_[+5(3.34e-05)]_39 chr2L:14413511-14413631 8.55e-01 120 chr3L:10964127-10964247 4.46e-01 120 chr2R:14929627-14929747 3.95e-01 120 chr2L:5479294-5479414 4.85e-01 120 chr3R:30265005-30265125 5.33e-04 25_[+3(7.32e-07)]_87 chr3R:10829902-10830022 8.97e-01 120 chr2R:19964394-19964514 3.72e-01 120 chr2R:12767360-12767480 9.60e-01 120 chr3R:29570387-29570507 9.72e-01 120 chrX:379632-379752 4.96e-01 120 chr2L:13146391-13146511 1.00e+00 120 chr3L:4749283-4749403 6.33e-01 120 chr2L:723929-724049 3.64e-03 20_[+1(1.02e-05)]_92 chr3R:16541992-16542112 5.50e-01 120 chr3L:5945714-5945834 1.12e-01 120 chr2L:3583548-3583668 7.17e-03 21_[+1(6.32e-05)]_91 chr3R:8958442-8958562 1.07e-01 120 chr4:829973-830093 7.87e-02 120 chr2L:15386858-15386978 8.98e-01 120 chrX:6004008-6004128 4.00e-01 120 chr3L:4747597-4747717 5.29e-01 120 chr3R:18469580-18469700 6.42e-01 120 chr3L:15013409-15013529 8.40e-01 120 chr2L:10673202-10673322 8.54e-01 120 chr2L:3562552-3562672 7.46e-02 120 chr3L:16168195-16168315 5.27e-01 120 chr3R:8445582-8445702 9.88e-02 120 chr3L:13178367-13178487 8.11e-01 120 chr3R:19074395-19074515 4.76e-04 104_[+1(5.09e-06)]_8 chrX:14017551-14017671 9.32e-01 120 chr2L:721902-722022 8.10e-01 120 chr3R:21649598-21649718 4.62e-01 120 chr3L:15220514-15220634 5.49e-01 120 chr3L:3442191-3442311 8.83e-01 120 chrX:5696196-5696316 7.60e-02 120 chr3L:21243524-21243644 9.89e-01 120 chr2R:16778125-16778245 1.50e-03 17_[+1(1.26e-05)]_95 chr3L:22130355-22130475 3.89e-01 120 chr3L:4383237-4383357 8.74e-01 120 chr3L:21720995-21721115 2.04e-01 120 chr2L:15396969-15397089 5.88e-02 24_[+5(4.07e-06)]_88 chr3R:31503838-31503958 8.87e-01 120 chr2L:2432955-2433075 3.39e-01 120 chr3R:7953153-7953273 7.94e-01 120 chr3L:13109484-13109604 8.16e-01 120 chr2L:13893633-13893753 6.85e-01 120 chr2R:18926581-18926701 7.20e-03 50_[+4(1.17e-05)]_62 chr3R:27222121-27222241 9.95e-01 120 chrX:7540874-7540994 3.22e-01 120 chr3L:71271-71391 9.17e-01 120 chr2L:21006707-21006827 3.64e-01 120 chr3L:2582445-2582565 2.16e-01 120 chrX:14098427-14098547 7.76e-01 120 chr3R:28914210-28914330 1.76e-01 120 chrX:9467188-9467308 6.73e-01 120 chr2L:1387955-1388075 2.95e-03 51_[+2(2.48e-06)]_61 chr2L:9981961-9982081 8.73e-01 120 chr3R:14847993-14848113 5.38e-02 57_[+2(1.82e-05)]_55 chr2L:7897401-7897521 3.81e-01 120 chrX:7222257-7222377 8.27e-01 120 chr3L:20632479-20632599 6.60e-01 120 chr2R:15100636-15100756 7.48e-01 120 chr3R:27179151-27179271 2.68e-01 120 chr3L:17926719-17926839 9.66e-01 120 chr2L:8585162-8585282 4.61e-01 120 chr3R:24970827-24970947 4.45e-01 120 chr3L:6458869-6458989 8.55e-01 120 chr2L:5372674-5372794 9.50e-01 120 chr3R:27084753-27084873 1.64e-01 120 chr3R:15631053-15631173 6.95e-02 120 chr3L:14350279-14350399 2.41e-01 120 chr2L:16590843-16590963 9.99e-01 120 chr3L:11634668-11634788 2.44e-01 120 chr3R:6954650-6954770 6.59e-01 120 chr3L:19035618-19035738 9.08e-01 120 chr3R:23878417-23878537 2.43e-02 105_[+2(9.35e-06)]_7 chr2L:8855612-8855732 3.39e-01 120 chr3L:3073602-3073722 4.65e-01 120 chr2R:18271192-18271312 7.47e-02 120 chr3L:8860046-8860166 8.90e-01 120 chr2L:19574578-19574698 2.78e-03 107_[+1(1.02e-05)]_5 chr3L:10562354-10562474 4.74e-01 120 chr2L:11052520-11052640 8.10e-02 60_[+5(5.39e-05)]_52 chr3R:18998506-18998626 5.94e-03 105_[+1(9.51e-07)]_7 chr3L:15174234-15174354 2.82e-02 98_[+4(3.47e-06)]_14 chr3L:20592709-20592829 3.55e-01 120 chr3L:1064506-1064626 6.54e-01 120 chrX:17726123-17726243 7.73e-02 120 chr2L:646663-646783 9.57e-01 120 chr3R:8811009-8811129 4.60e-01 120 chr2R:18879214-18879334 9.93e-01 120 chr3L:10365026-10365146 2.13e-01 120 chr3L:11373949-11374069 9.99e-01 120 chrX:9656508-9656628 5.69e-01 120 chr2R:15063811-15063931 9.53e-01 120 chr2L:1409814-1409934 1.71e-03 75_[+4(3.47e-06)]_37 chr2L:18003150-18003270 9.92e-01 120 chr3R:30843232-30843352 3.95e-01 120 chr2R:11749569-11749689 6.50e-01 120 chrX:21127380-21127500 8.82e-01 120 chr2L:17750264-17750384 9.85e-03 8_[+4(9.72e-07)]_104 chr3L:18243280-18243400 7.21e-01 120 chr3L:2867006-2867126 5.44e-01 120 chr2L:5288411-5288531 7.13e-01 120 chr3R:30843881-30844001 4.85e-01 120 chrX:4442624-4442744 7.68e-01 120 chr2L:7323076-7323196 7.32e-04 3_[+2(2.48e-06)]_62_[+2(8.96e-05)]_\ 39 chr3R:22140216-22140336 1.13e-02 1_[+2(4.94e-06)]_111 chr3R:10466395-10466515 1.90e-02 99_[+5(1.74e-06)]_13 chr2L:5290044-5290164 3.93e-01 120 chr3L:14610630-14610750 7.88e-01 120 chr2L:20916931-20917051 1.87e-03 75_[+2(4.94e-06)]_37 chrX:6028019-6028139 6.85e-01 120 chr2R:15000504-15000624 1.21e-02 106_[+4(3.29e-05)]_6 chr3L:20952222-20952342 9.03e-03 31_[+2(3.19e-05)]_81 chr2R:18304624-18304744 9.12e-01 120 chr2L:4028113-4028233 1.75e-01 120 chr2R:19617341-19617461 3.91e-04 70_[+2(1.82e-05)]_42 chr3R:14691610-14691730 1.00e+00 120 chr3R:5331873-5331993 5.43e-01 120 chr2R:10057962-10058082 2.63e-02 120 chrX:7558768-7558888 7.12e-01 120 chr2R:10656093-10656213 3.60e-01 120 chrX:7535016-7535136 5.92e-02 87_[+3(3.11e-05)]_25 chrX:8215643-8215763 8.48e-01 120 chr2L:7899287-7899407 8.07e-02 120 chr3L:2800412-2800532 6.43e-04 83_[+2(2.48e-06)]_29 chrX:12507714-12507834 2.43e-01 120 chr3L:3338987-3339107 7.53e-01 120 chr3L:20635705-20635825 5.17e-02 35_[+4(1.52e-05)]_77 chr2L:16591522-16591642 2.54e-01 120 chr3L:776368-776488 8.92e-01 120 chr3L:7611385-7611505 9.41e-01 120 chr3R:14421941-14422061 1.92e-01 120 chr2L:11069638-11069758 9.73e-01 120 chrX:3867190-3867310 8.94e-01 120 chr3L:10387679-10387799 3.12e-03 47_[+5(6.40e-06)]_65 chr2L:21005570-21005690 1.00e+00 120 chr3L:20582516-20582636 2.02e-01 44_[+3(8.25e-05)]_68 chr3R:14684094-14684214 1.94e-02 42_[+1(7.54e-06)]_70 chr3R:18787357-18787477 7.45e-01 120 chr3R:31963260-31963380 5.40e-03 82_[+4(1.17e-05)]_30 chr3L:12915574-12915694 9.33e-01 120 chr2L:18523132-18523252 4.23e-01 120 chr2L:1456994-1457114 4.33e-02 120 chr3L:21253069-21253189 2.39e-01 120 chr2R:9498748-9498868 1.23e-01 120 chr3R:29279712-29279832 4.06e-03 120 chr2R:8307919-8308039 3.85e-03 14_[+1(5.09e-06)]_98 chr2L:7541474-7541594 9.89e-01 120 chr3R:26832011-26832131 4.87e-01 120 chr3R:29280768-29280888 1.34e-01 120 chr3L:21738539-21738659 4.07e-02 52_[+5(5.04e-06)]_60 chr3L:15180971-15181091 6.43e-01 120 chr3L:15264753-15264873 1.00e+00 120 chr3R:27205115-27205235 3.54e-02 120 chrX:21044575-21044695 7.84e-01 120 chr2L:15385549-15385669 5.93e-01 120 chr2R:8143511-8143631 6.26e-02 120 chr3R:11869867-11869987 1.67e-01 120 chr3R:10455049-10455169 9.18e-01 120 chr3R:26019358-26019478 8.02e-01 120 chr3R:26496484-26496604 8.44e-01 120 chr3L:9462933-9463053 3.43e-04 40_[+3(7.32e-07)]_72 chrX:10581633-10581753 9.42e-01 120 chr3L:18079657-18079777 9.97e-01 120 chrX:2336624-2336744 2.09e-01 120 chr2L:7911456-7911576 1.48e-03 83_[+1(2.63e-06)]_29 chr3L:16762313-16762433 9.83e-01 120 chr2L:18122285-18122405 4.39e-01 120 chr3R:9966252-9966372 9.71e-01 120 chrX:7537942-7538062 3.13e-03 66_[+5(3.09e-06)]_46 chr3L:2117163-2117283 9.39e-01 120 chr3R:21826197-21826317 5.61e-01 120 chr3R:21935339-21935459 7.96e-01 120 chr2R:22529752-22529872 3.59e-02 120 chr2R:16836464-16836584 3.33e-01 120 chr3L:12030676-12030796 1.05e-01 120 chr3R:29847283-29847403 2.76e-01 120 chr3R:22184201-22184321 8.96e-01 120 chr3L:13212987-13213107 2.52e-01 120 chr2R:18907113-18907233 8.19e-01 120 chr2L:7199675-7199795 9.65e-01 120 chr3R:24549896-24550016 2.75e-02 99_[+4(5.39e-05)]_13 chr2L:11386549-11386669 1.41e-02 30_[+4(4.81e-06)]_82 chr2L:2162742-2162862 7.62e-03 23_[+5(7.37e-06)]_89 chr3R:29300168-29300288 1.33e-02 5_[+4(6.74e-06)]_107 chr3R:31312418-31312538 4.46e-01 120 chr3L:21122642-21122762 3.04e-01 75_[+2(7.58e-05)]_37 chr2R:10558247-10558367 2.23e-01 120 chr3R:7646294-7646414 8.54e-01 120 chr3L:17577001-17577121 6.14e-01 120 chr3R:13846059-13846179 8.65e-01 120 chr2R:16212955-16213075 7.94e-01 120 chr2L:609646-609766 8.16e-02 120 chr3L:3444372-3444492 4.58e-01 120 chr2R:10559960-10560080 1.45e-01 120 chr2L:18566791-18566911 1.17e-03 29_[+1(5.09e-06)]_83 chrX:9068917-9069037 6.51e-03 72_[+2(5.31e-05)]_40 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************