******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Ets21C.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:2395-2515 1.0000 120 chr2L:518028-518148 1.0000 120 chr3L:10359578-10359698 1.0000 120 chr3L:3785806-3785926 1.0000 120 chrM:5990-6110 1.0000 120 chrM:7108-7228 1.0000 120 chr2R:16685786-16685906 1.0000 120 chrM:4458-4578 1.0000 120 chr3R:26192402-26192522 1.0000 120 chr2R:12646927-12647047 1.0000 120 chrX:17545711-17545831 1.0000 120 chrM:2156-2276 1.0000 120 chr2R:8977677-8977797 1.0000 120 chrM:9815-9935 1.0000 120 chrM:11336-11456 1.0000 120 chrM:213-333 1.0000 120 chrX:22846500-22846620 1.0000 120 chr2R:18610452-18610572 1.0000 120 chr3R:8272743-8272863 1.0000 120 chr2L:526313-526433 1.0000 120 chr2R:23237507-23237627 1.0000 120 chr2L:4069712-4069832 1.0000 120 chr3L:6471940-6472060 1.0000 120 chr2L:13073094-13073214 1.0000 120 chr2L:18901188-18901308 1.0000 120 chrX:12245789-12245909 1.0000 120 chr3R:16985699-16985819 1.0000 120 chrX:21281698-21281818 1.0000 120 chr3L:18276113-18276233 1.0000 120 chr3L:761852-761972 1.0000 120 chr3R:30071921-30072041 1.0000 120 chr2R:16818843-16818963 1.0000 120 chr3R:31978494-31978614 1.0000 120 chrM:12154-12274 1.0000 120 chr3L:8763882-8764002 1.0000 120 chrM:13201-13321 1.0000 120 chrX:19149226-19149346 1.0000 120 chr2L:15329552-15329672 1.0000 120 chr3R:30843773-30843893 1.0000 120 chrX:5608680-5608800 1.0000 120 chr2L:11399645-11399765 1.0000 120 chr3L:1457330-1457450 1.0000 120 chrX:15042659-15042779 1.0000 120 chr2R:8659673-8659793 1.0000 120 chrX:10210599-10210719 1.0000 120 chr3L:19696505-19696625 1.0000 120 chr3L:3074427-3074547 1.0000 120 chrX:14073623-14073743 1.0000 120 chrX:21073752-21073872 1.0000 120 chrX:6022246-6022366 1.0000 120 chrM:1567-1687 1.0000 120 chr3R:4961565-4961685 1.0000 120 chr2R:14467078-14467198 1.0000 120 chrX:173628-173748 1.0000 120 chr2L:9438372-9438492 1.0000 120 chrX:17172241-17172361 1.0000 120 chr3R:31956454-31956574 1.0000 120 chr3L:21738808-21738928 1.0000 120 chrX:8491121-8491241 1.0000 120 chrX:5026780-5026900 1.0000 120 chrX:386194-386314 1.0000 120 chr2R:21030423-21030543 1.0000 120 chr3R:16501523-16501643 1.0000 120 chr2R:23024310-23024430 1.0000 120 chr2R:22261196-22261316 1.0000 120 chr3L:8370990-8371110 1.0000 120 chr2L:634289-634409 1.0000 120 chr3L:14453363-14453483 1.0000 120 chr2L:650979-651099 1.0000 120 chr3R:31308972-31309092 1.0000 120 chr3L:21100565-21100685 1.0000 120 chr3L:15188797-15188917 1.0000 120 chrX:20509631-20509751 1.0000 120 chrX:17875320-17875440 1.0000 120 chr3L:8460135-8460255 1.0000 120 chr3R:13931870-13931990 1.0000 120 chr3L:18406074-18406194 1.0000 120 chrX:14750579-14750699 1.0000 120 chr2L:18805775-18805895 1.0000 120 chr3R:8968936-8969056 1.0000 120 chrX:17760614-17760734 1.0000 120 chr3R:12345000-12345120 1.0000 120 chrM:14186-14306 1.0000 120 chr2L:3570024-3570144 1.0000 120 chr2L:1145117-1145237 1.0000 120 chrX:6030177-6030297 1.0000 120 chr3R:31505412-31505532 1.0000 120 chrX:9892979-9893099 1.0000 120 chr2L:18466326-18466446 1.0000 120 chr3R:6401617-6401737 1.0000 120 chr2L:4567340-4567460 1.0000 120 chr3R:29762444-29762564 1.0000 120 chr3R:22205701-22205821 1.0000 120 chr3L:3073623-3073743 1.0000 120 chr3L:6302590-6302710 1.0000 120 chrX:3680335-3680455 1.0000 120 chrX:8895643-8895763 1.0000 120 chr2L:15275931-15276051 1.0000 120 chrX:18777428-18777548 1.0000 120 chr2L:16526743-16526863 1.0000 120 chr2R:22144260-22144380 1.0000 120 chr2L:11966123-11966243 1.0000 120 chr3R:13793453-13793573 1.0000 120 chr2L:19905320-19905440 1.0000 120 chr3L:14055475-14055595 1.0000 120 chrM:2706-2826 1.0000 120 chrX:2455534-2455654 1.0000 120 chr2L:11220941-11221061 1.0000 120 chr3L:2795710-2795830 1.0000 120 chr2R:16812894-16813014 1.0000 120 chr3R:23148509-23148629 1.0000 120 chr2L:9736164-9736284 1.0000 120 chrX:6458048-6458168 1.0000 120 chr3R:9913578-9913698 1.0000 120 chr2R:10599118-10599238 1.0000 120 chrX:1466252-1466372 1.0000 120 chr3R:21648637-21648757 1.0000 120 chr2L:16498163-16498283 1.0000 120 chrX:2648093-2648213 1.0000 120 chr2L:7573346-7573466 1.0000 120 chrX:2788776-2788896 1.0000 120 chr3L:20953384-20953504 1.0000 120 chr2L:3341720-3341840 1.0000 120 chr2L:3554063-3554183 1.0000 120 chr3R:31059860-31059980 1.0000 120 chr3R:15580772-15580892 1.0000 120 chr3L:1087427-1087547 1.0000 120 chrM:14393-14513 1.0000 120 chr2R:7615663-7615783 1.0000 120 chr3R:29763932-29764052 1.0000 120 chrM:7444-7564 1.0000 120 chr3R:8116054-8116174 1.0000 120 chr2R:24807826-24807946 1.0000 120 chr3R:22628047-22628167 1.0000 120 chr3L:729476-729596 1.0000 120 chr3R:5103743-5103863 1.0000 120 chr2L:11394263-11394383 1.0000 120 chrX:11550185-11550305 1.0000 120 chr2R:23014895-23015015 1.0000 120 chrX:17814906-17815026 1.0000 120 chr3R:23504859-23504979 1.0000 120 chr3R:27593349-27593469 1.0000 120 chr3R:31062753-31062873 1.0000 120 chr3R:21827585-21827705 1.0000 120 chr2L:7992072-7992192 1.0000 120 chrX:1320537-1320657 1.0000 120 chr2R:6994720-6994840 1.0000 120 chr2L:1887846-1887966 1.0000 120 chr2R:20136852-20136972 1.0000 120 chr2R:10771996-10772116 1.0000 120 chr3R:4884017-4884137 1.0000 120 chrX:19164860-19164980 1.0000 120 chr2R:14782989-14783109 1.0000 120 chr3L:3513182-3513302 1.0000 120 chr2R:19187345-19187465 1.0000 120 chrM:5369-5489 1.0000 120 chrM:3534-3654 1.0000 120 chr3L:3246872-3246992 1.0000 120 chrX:8667839-8667959 1.0000 120 chr3L:3612755-3612875 1.0000 120 chr3L:785857-785977 1.0000 120 chrX:5044571-5044691 1.0000 120 chrX:7892646-7892766 1.0000 120 chr2R:19913889-19914009 1.0000 120 chr3L:8368817-8368937 1.0000 120 chrX:13541348-13541468 1.0000 120 chr2R:20065622-20065742 1.0000 120 chr3L:1458112-1458232 1.0000 120 chrX:2452904-2453024 1.0000 120 chr2L:7973985-7974105 1.0000 120 chr2R:10237717-10237837 1.0000 120 chr3R:20001601-20001721 1.0000 120 chr3L:764422-764542 1.0000 120 chr3L:15180906-15181026 1.0000 120 chr3R:29538578-29538698 1.0000 120 chr3L:3449896-3450016 1.0000 120 chr2R:13478534-13478654 1.0000 120 chrM:6191-6311 1.0000 120 chr3R:30689838-30689958 1.0000 120 chr2R:18312674-18312794 1.0000 120 chr3R:8893146-8893266 1.0000 120 chr3R:10579692-10579812 1.0000 120 chr3R:15566497-15566617 1.0000 120 chr3L:21099096-21099216 1.0000 120 chr3R:25461843-25461963 1.0000 120 chrX:8273900-8274020 1.0000 120 chr3L:11293374-11293494 1.0000 120 chrM:5163-5283 1.0000 120 chr3R:9934999-9935119 1.0000 120 chr3L:11365858-11365978 1.0000 120 chr3R:29778201-29778321 1.0000 120 chr2R:7531280-7531400 1.0000 120 chr3L:18198915-18199035 1.0000 120 chr3L:6220277-6220397 1.0000 120 chr3L:12409101-12409221 1.0000 120 chr3L:388245-388365 1.0000 120 chrX:14897794-14897914 1.0000 120 chrX:5026161-5026281 1.0000 120 chrX:5025471-5025591 1.0000 120 chr2R:6144344-6144464 1.0000 120 chrX:21074470-21074590 1.0000 120 chrX:779457-779577 1.0000 120 chr2R:23022641-23022761 1.0000 120 chr3L:818537-818657 1.0000 120 chrX:9656498-9656618 1.0000 120 chr3R:27140028-27140148 1.0000 120 chr2L:11222171-11222291 1.0000 120 chr3R:8470712-8470832 1.0000 120 chr2L:19142591-19142711 1.0000 120 chrM:10740-10860 1.0000 120 chr3L:11297649-11297769 1.0000 120 chrX:17298096-17298216 1.0000 120 chr2R:17459070-17459190 1.0000 120 chr2L:1427905-1428025 1.0000 120 chr2L:11328472-11328592 1.0000 120 chr2L:11066117-11066237 1.0000 120 chr2R:8195165-8195285 1.0000 120 chr3L:5819427-5819547 1.0000 120 chr2R:18308275-18308395 1.0000 120 chrX:10104614-10104734 1.0000 120 chr3R:8142244-8142364 1.0000 120 chrX:17571111-17571231 1.0000 120 chr2L:7574480-7574600 1.0000 120 chr2R:10160322-10160442 1.0000 120 chr2L:10791431-10791551 1.0000 120 chrM:8631-8751 1.0000 120 chr3R:20765848-20765968 1.0000 120 chr3R:16336567-16336687 1.0000 120 chrM:8840-8960 1.0000 120 chr3L:4619944-4620064 1.0000 120 chr2L:1409824-1409944 1.0000 120 chr3L:16489998-16490118 1.0000 120 chr2R:9444457-9444577 1.0000 120 chr2R:19153404-19153524 1.0000 120 chr2L:18871846-18871966 1.0000 120 chrX:4113760-4113880 1.0000 120 chr2R:11183181-11183301 1.0000 120 chr3R:28633886-28634006 1.0000 120 chr3L:20403649-20403769 1.0000 120 chr2R:6556934-6557054 1.0000 120 chr2R:12741662-12741782 1.0000 120 chr3R:30281413-30281533 1.0000 120 chr2R:23299451-23299571 1.0000 120 chr3R:13934783-13934903 1.0000 120 chrX:8244494-8244614 1.0000 120 chr2L:675013-675133 1.0000 120 chr2L:7897337-7897457 1.0000 120 chr3L:2802190-2802310 1.0000 120 chr2R:7092991-7093111 1.0000 120 chr2R:19969839-19969959 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Ets21C/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Ets21C.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.343 C 0.16 G 0.157 T 0.341 Background letter frequencies (from file dataset with add-one prior applied): A 0.342 C 0.16 G 0.157 T 0.341 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGTGGSGC MEME-1 width = 8 sites = 11 llr = 116 E-value = 5.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGGSGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 7::::1:: pos.-specific C 11:::41a probability G 19:a959: matrix T 1:a:1::: bits 2.7 * * 2.4 * * 2.1 * ** ** 1.9 * ** ** Relative 1.6 **** ** Entropy 1.3 ******* (15.2 bits) 1.1 ******* 0.8 ******* 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AGTGGGGC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGSGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:11365858-11365978 11 1.78e-06 GAGCTGGCAC AGTGGGGC CAACGACGGG chrX:8273900-8274020 22 1.78e-06 GTGCCAACCG AGTGGGGC GCTAAAAATA chr2R:22144260-22144380 56 1.78e-06 AACACGAGAC AGTGGGGC AAAGCCATGG chr2L:1427905-1428025 14 3.59e-06 GTGGGACGAA AGTGGCGC AAACAATGTC chr3R:23148509-23148629 89 6.92e-06 CCATGATGAT GGTGGCGC GGGTCGGAGG chr2R:16685786-16685906 109 6.92e-06 ACCCCTCTTG CGTGGCGC TCAT chr3R:30071921-30072041 11 8.70e-06 GGAATGGGTC TGTGGGGC ATTTGAACTC chr2L:11222171-11222291 25 1.23e-05 GGCCATGAAC AGTGGGCC ATGTTCCCCA chrX:2648093-2648213 42 1.80e-05 CTCCCAGCGC AGTGGAGC CAAAGTCCTA chr3L:2802190-2802310 72 2.17e-05 GGTTAATATA ACTGGCGC CCAACGTGGG chr2R:10160322-10160442 10 2.56e-05 TCGCCACAC AGTGTGGC CTCAGTAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGSGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:11365858-11365978 1.8e-06 10_[+1]_102 chrX:8273900-8274020 1.8e-06 21_[+1]_91 chr2R:22144260-22144380 1.8e-06 55_[+1]_57 chr2L:1427905-1428025 3.6e-06 13_[+1]_99 chr3R:23148509-23148629 6.9e-06 88_[+1]_24 chr2R:16685786-16685906 6.9e-06 108_[+1]_4 chr3R:30071921-30072041 8.7e-06 10_[+1]_102 chr2L:11222171-11222291 1.2e-05 24_[+1]_88 chrX:2648093-2648213 1.8e-05 41_[+1]_71 chr3L:2802190-2802310 2.2e-05 71_[+1]_41 chr2R:10160322-10160442 2.6e-05 9_[+1]_103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGSGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGGSGC width=8 seqs=11 chr3L:11365858-11365978 ( 11) AGTGGGGC 1 chrX:8273900-8274020 ( 22) AGTGGGGC 1 chr2R:22144260-22144380 ( 56) AGTGGGGC 1 chr2L:1427905-1428025 ( 14) AGTGGCGC 1 chr3R:23148509-23148629 ( 89) GGTGGCGC 1 chr2R:16685786-16685906 ( 109) CGTGGCGC 1 chr3R:30071921-30072041 ( 11) TGTGGGGC 1 chr2L:11222171-11222291 ( 25) AGTGGGCC 1 chrX:2648093-2648213 ( 42) AGTGGAGC 1 chr3L:2802190-2802310 ( 72) ACTGGCGC 1 chr2R:10160322-10160442 ( 10) AGTGTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGSGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 5.1e+002 109 -82 -78 -190 -1010 -82 254 -1010 -1010 -1010 -1010 155 -1010 -1010 267 -1010 -1010 -1010 254 -190 -191 118 180 -1010 -1010 -82 254 -1010 -1010 264 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGSGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 5.1e+002 0.727273 0.090909 0.090909 0.090909 0.000000 0.090909 0.909091 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.909091 0.090909 0.090909 0.363636 0.545455 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGSGC MEME-1 regular expression -------------------------------------------------------------------------------- AGTGG[GC]GC -------------------------------------------------------------------------------- Time 7.58 secs. ******************************************************************************** ******************************************************************************** MOTIF AVMAGCTG MEME-2 width = 8 sites = 17 llr = 168 E-value = 4.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AVMAGCTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A a46a:::: pos.-specific C :34::a:: probability G :3::a::a matrix T ::::::a: bits 2.7 ** * 2.4 ** * 2.1 ** * 1.9 ** * Relative 1.6 * ***** Entropy 1.3 * ***** (14.3 bits) 1.1 * ****** 0.8 * ****** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AAAAGCTG consensus CC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVMAGCTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrM:5369-5489 77 7.98e-06 TTGGTTTTGA AGCAGCTG CATGATATTG chrM:7444-7564 10 7.98e-06 TAAATATAC ACCAGCTG TAACTAATGT chr2R:18308275-18308395 50 2.50e-05 ACTGATAAAA ACAAGCTG TTTCGCACAG chr3R:20001601-20001721 105 2.50e-05 TTCagctcaa agaagctg ggttcgga chr3R:5103743-5103863 100 2.50e-05 TCGATCCATT AGAAGCTG AAATGGACAA chr3R:13931870-13931990 9 2.50e-05 GGATCGGG AGAAGCTG TAGCCGAATC chr2L:13073094-13073214 25 2.50e-05 TTTCAATAAC ACAAGCTG TTTGCTGCAT chrM:7108-7228 1 2.50e-05 . ACAAGCTG AAGTTAAAGG chr3L:10359578-10359698 69 2.50e-05 GTTTTAAAGA ACAAGCTG TTCATATTTC chr2L:518028-518148 28 2.50e-05 AAGACCCTTT AGAAGCTG ATTTCAAAAA chrM:3534-3654 10 3.36e-05 AATTTTAGT AACAGCTG CTGATGTTAT chrX:2788776-2788896 83 3.36e-05 CTTATTTATG AACAGCTG TTTGTTAAAG chr2L:9736164-9736284 97 3.36e-05 GATGTCATTC AACAGCTG AGCTTGAGTT chrX:17760614-17760734 35 3.36e-05 CAACAGCGGC AACAGCTG CACTGAGCGA chr3L:3785806-3785926 17 3.36e-05 AGCTGACTAT AACAGCTG ATGCTCTACA chr3L:4619944-4620064 104 5.20e-05 AAATCAGCAT AAAAGCTG GCAATTGAA chrM:6191-6311 18 5.20e-05 ATGATCAAGT AAAAGCTG CTAACTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVMAGCTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:5369-5489 8e-06 76_[+2]_36 chrM:7444-7564 8e-06 9_[+2]_103 chr2R:18308275-18308395 2.5e-05 49_[+2]_63 chr3R:20001601-20001721 2.5e-05 104_[+2]_8 chr3R:5103743-5103863 2.5e-05 99_[+2]_13 chr3R:13931870-13931990 2.5e-05 8_[+2]_104 chr2L:13073094-13073214 2.5e-05 24_[+2]_88 chrM:7108-7228 2.5e-05 [+2]_112 chr3L:10359578-10359698 2.5e-05 68_[+2]_44 chr2L:518028-518148 2.5e-05 27_[+2]_85 chrM:3534-3654 3.4e-05 9_[+2]_103 chrX:2788776-2788896 3.4e-05 82_[+2]_30 chr2L:9736164-9736284 3.4e-05 96_[+2]_16 chrX:17760614-17760734 3.4e-05 34_[+2]_78 chr3L:3785806-3785926 3.4e-05 16_[+2]_96 chr3L:4619944-4620064 5.2e-05 103_[+2]_9 chrM:6191-6311 5.2e-05 17_[+2]_95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVMAGCTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AVMAGCTG width=8 seqs=17 chrM:5369-5489 ( 77) AGCAGCTG 1 chrM:7444-7564 ( 10) ACCAGCTG 1 chr2R:18308275-18308395 ( 50) ACAAGCTG 1 chr3R:20001601-20001721 ( 105) AGAAGCTG 1 chr3R:5103743-5103863 ( 100) AGAAGCTG 1 chr3R:13931870-13931990 ( 9) AGAAGCTG 1 chr2L:13073094-13073214 ( 25) ACAAGCTG 1 chrM:7108-7228 ( 1) ACAAGCTG 1 chr3L:10359578-10359698 ( 69) ACAAGCTG 1 chr2L:518028-518148 ( 28) AGAAGCTG 1 chrM:3534-3654 ( 10) AACAGCTG 1 chrX:2788776-2788896 ( 83) AACAGCTG 1 chr2L:9736164-9736284 ( 97) AACAGCTG 1 chrX:17760614-17760734 ( 35) AACAGCTG 1 chr3L:3785806-3785926 ( 17) AACAGCTG 1 chr3L:4619944-4620064 ( 104) AAAAGCTG 1 chrM:6191-6311 ( 18) AAAAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVMAGCTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7672 E= 4.3e+002 155 -1073 -1073 -1073 27 88 91 -1073 78 136 -1073 -1073 155 -1073 -1073 -1073 -1073 -1073 267 -1073 -1073 264 -1073 -1073 -1073 -1073 -1073 155 -1073 -1073 267 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVMAGCTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 4.3e+002 1.000000 0.000000 0.000000 0.000000 0.411765 0.294118 0.294118 0.000000 0.588235 0.411765 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVMAGCTG MEME-2 regular expression -------------------------------------------------------------------------------- A[ACG][AC]AGCTG -------------------------------------------------------------------------------- Time 13.88 secs. ******************************************************************************** ******************************************************************************** MOTIF YGGSTGGG MEME-3 width = 8 sites = 3 llr = 37 E-value = 1.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGGSTGGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 7::3:::: probability G :aa7:aaa matrix T 3:::a::: bits 2.7 ** *** 2.4 ** *** 2.1 ** *** 1.9 *** *** Relative 1.6 ******* Entropy 1.3 ******** (18.0 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGGGTGGG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGSTGGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:11365858-11365978 25 8.17e-07 GGGCCAACGA CGGGTGGG GGATAGTAAC chr3R:23504859-23504979 104 1.65e-06 ATATTCAATA CGGCTGGG TCGAATTCA chr3L:8370990-8371110 24 3.39e-06 GGTGAATGCG TGGGTGGG TTAAAAAGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGSTGGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:11365858-11365978 8.2e-07 24_[+3]_88 chr3R:23504859-23504979 1.6e-06 103_[+3]_9 chr3L:8370990-8371110 3.4e-06 23_[+3]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGSTGGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGGSTGGG width=8 seqs=3 chr3L:11365858-11365978 ( 25) CGGGTGGG 1 chr3R:23504859-23504979 ( 104) CGGCTGGG 1 chr3L:8370990-8371110 ( 24) TGGGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGSTGGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 1.9e+004 -823 205 -823 -3 -823 -823 267 -823 -823 -823 267 -823 -823 106 209 -823 -823 -823 -823 155 -823 -823 267 -823 -823 -823 267 -823 -823 -823 267 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGSTGGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.9e+004 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGSTGGG MEME-3 regular expression -------------------------------------------------------------------------------- [CT]GG[GC]TGGG -------------------------------------------------------------------------------- Time 20.16 secs. ******************************************************************************** ******************************************************************************** MOTIF SCGSCSCG MEME-4 width = 8 sites = 3 llr = 38 E-value = 6.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCGSCSCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 3a:3a7a: probability G 7:a7:3:a matrix T :::::::: bits 2.7 ** * ** 2.4 ** * ** 2.1 ** * ** 1.9 ***** ** Relative 1.6 ******** Entropy 1.3 ******** (18.5 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGGCCCG consensus C C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGSCSCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6030177-6030297 6 7.89e-07 ATAAG GCGGCGCG TCAATGATGT chrX:19149226-19149346 36 1.60e-06 aagggaaaaa CCGGCCCG AAAATGCCCC chr3R:16985699-16985819 91 1.60e-06 ATAAGTCAGT GCGCCCCG CTGTTAAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGSCSCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6030177-6030297 7.9e-07 5_[+4]_107 chrX:19149226-19149346 1.6e-06 35_[+4]_77 chr3R:16985699-16985819 1.6e-06 90_[+4]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGSCSCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCGSCSCG width=8 seqs=3 chrX:6030177-6030297 ( 6) GCGGCGCG 1 chrX:19149226-19149346 ( 36) CCGGCCCG 1 chr3R:16985699-16985819 ( 91) GCGCCCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGSCSCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 6.3e+003 -823 106 209 -823 -823 264 -823 -823 -823 -823 267 -823 -823 106 209 -823 -823 264 -823 -823 -823 205 109 -823 -823 264 -823 -823 -823 -823 267 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGSCSCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 6.3e+003 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGSCSCG MEME-4 regular expression -------------------------------------------------------------------------------- [GC]CG[GC]C[CG]CG -------------------------------------------------------------------------------- Time 26.38 secs. ******************************************************************************** ******************************************************************************** MOTIF GGACGRGG MEME-5 width = 8 sites = 2 llr = 26 E-value = 3.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGACGRGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a::5:: pos.-specific C :::a:::: probability G aa::a5aa matrix T :::::::: bits 2.7 ** ** ** 2.4 ** ** ** 2.1 ** ** ** 1.9 ** ** ** Relative 1.6 ***** ** Entropy 1.3 ***** ** (18.7 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGACGAGG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACGRGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8273900-8274020 5 8.19e-07 GGGT GGACGGGG TGCCAACCGA chrM:10740-10860 56 2.60e-06 CTTACATGTA GGACGAGG AATTTATTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACGRGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8273900-8274020 8.2e-07 4_[+5]_108 chrM:10740-10860 2.6e-06 55_[+5]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACGRGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGACGRGG width=8 seqs=2 chrX:8273900-8274020 ( 5) GGACGGGG 1 chrM:10740-10860 ( 56) GGACGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACGRGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 3.1e+004 -765 -765 267 -765 -765 -765 267 -765 154 -765 -765 -765 -765 264 -765 -765 -765 -765 267 -765 54 -765 167 -765 -765 -765 267 -765 -765 -765 267 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACGRGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.1e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACGRGG MEME-5 regular expression -------------------------------------------------------------------------------- GGACG[AG]GG -------------------------------------------------------------------------------- Time 32.61 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:2395-2515 9.64e-01 120 chr2L:518028-518148 2.55e-01 27_[+2(2.50e-05)]_85 chr3L:10359578-10359698 7.30e-02 68_[+2(2.50e-05)]_44 chr3L:3785806-3785926 2.74e-02 16_[+2(3.36e-05)]_96 chrM:5990-6110 9.87e-01 120 chrM:7108-7228 1.87e-01 [+2(2.50e-05)]_112 chr2R:16685786-16685906 7.31e-04 108_[+1(6.92e-06)]_4 chrM:4458-4578 1.37e-01 120 chr3R:26192402-26192522 7.33e-02 120 chr2R:12646927-12647047 9.93e-01 120 chrX:17545711-17545831 1.90e-01 120 chrM:2156-2276 9.19e-01 120 chr2R:8977677-8977797 2.17e-01 23_[+2(8.55e-05)]_89 chrM:9815-9935 1.00e+00 120 chrM:11336-11456 8.53e-01 120 chrM:213-333 5.50e-01 120 chrX:22846500-22846620 2.14e-01 120 chr2R:18610452-18610572 6.27e-01 120 chr3R:8272743-8272863 8.45e-02 1_[+3(7.23e-05)]_111 chr2L:526313-526433 7.01e-01 120 chr2R:23237507-23237627 1.42e-01 120 chr2L:4069712-4069832 2.57e-01 120 chr3L:6471940-6472060 2.63e-01 120 chr2L:13073094-13073214 2.41e-01 24_[+2(2.50e-05)]_88 chr2L:18901188-18901308 3.91e-01 120 chrX:12245789-12245909 7.25e-01 120 chr3R:16985699-16985819 1.53e-03 90_[+4(1.60e-06)]_22 chrX:21281698-21281818 9.92e-01 120 chr3L:18276113-18276233 9.79e-01 120 chr3L:761852-761972 7.34e-02 120 chr3R:30071921-30072041 9.31e-03 10_[+1(8.70e-06)]_102 chr2R:16818843-16818963 9.22e-01 120 chr3R:31978494-31978614 4.53e-01 120 chrM:12154-12274 6.05e-01 120 chr3L:8763882-8764002 1.00e+00 120 chrM:13201-13321 6.93e-01 120 chrX:19149226-19149346 8.98e-03 35_[+4(1.60e-06)]_77 chr2L:15329552-15329672 8.66e-01 120 chr3R:30843773-30843893 8.50e-01 120 chrX:5608680-5608800 5.60e-01 120 chr2L:11399645-11399765 9.92e-01 120 chr3L:1457330-1457450 1.57e-01 120 chrX:15042659-15042779 9.72e-01 120 chr2R:8659673-8659793 3.08e-01 120 chrX:10210599-10210719 1.43e-01 120 chr3L:19696505-19696625 6.41e-01 120 chr3L:3074427-3074547 8.90e-01 120 chrX:14073623-14073743 4.32e-01 120 chrX:21073752-21073872 7.58e-01 120 chrX:6022246-6022366 1.73e-01 120 chrM:1567-1687 1.88e-01 120 chr3R:4961565-4961685 4.93e-01 120 chr2R:14467078-14467198 9.90e-01 120 chrX:173628-173748 5.52e-02 120 chr2L:9438372-9438492 2.82e-02 97_[+3(7.23e-05)]_15 chrX:17172241-17172361 1.67e-01 120 chr3R:31956454-31956574 7.35e-01 120 chr3L:21738808-21738928 7.80e-01 120 chrX:8491121-8491241 7.86e-01 120 chrX:5026780-5026900 7.67e-01 120 chrX:386194-386314 2.52e-01 120 chr2R:21030423-21030543 2.81e-01 120 chr3R:16501523-16501643 9.16e-01 120 chr2R:23024310-23024430 3.68e-01 120 chr2R:22261196-22261316 2.03e-01 120 chr3L:8370990-8371110 2.30e-02 23_[+3(3.39e-06)]_89 chr2L:634289-634409 6.27e-02 120 chr3L:14453363-14453483 3.51e-01 120 chr2L:650979-651099 4.00e-01 120 chr3R:31308972-31309092 3.38e-01 120 chr3L:21100565-21100685 9.07e-01 120 chr3L:15188797-15188917 2.02e-02 120 chrX:20509631-20509751 9.92e-01 120 chrX:17875320-17875440 7.13e-01 120 chr3L:8460135-8460255 1.96e-01 120 chr3R:13931870-13931990 3.30e-03 8_[+2(2.50e-05)]_104 chr3L:18406074-18406194 9.61e-01 120 chrX:14750579-14750699 8.68e-01 120 chr2L:18805775-18805895 1.00e+00 120 chr3R:8968936-8969056 8.30e-01 120 chrX:17760614-17760734 9.09e-04 34_[+2(3.36e-05)]_78 chr3R:12345000-12345120 9.75e-01 120 chrM:14186-14306 1.36e-01 120 chr2L:3570024-3570144 1.00e+00 120 chr2L:1145117-1145237 6.02e-03 22_[+5(3.65e-05)]_90 chrX:6030177-6030297 6.40e-04 5_[+4(7.89e-07)]_107 chr3R:31505412-31505532 9.95e-01 120 chrX:9892979-9893099 8.97e-01 120 chr2L:18466326-18466446 7.33e-02 120 chr3R:6401617-6401737 5.10e-01 120 chr2L:4567340-4567460 9.94e-01 120 chr3R:29762444-29762564 1.63e-01 120 chr3R:22205701-22205821 1.95e-01 120 chr3L:3073623-3073743 8.70e-01 120 chr3L:6302590-6302710 9.90e-01 120 chrX:3680335-3680455 6.37e-01 120 chrX:8895643-8895763 8.71e-01 120 chr2L:15275931-15276051 9.93e-01 120 chrX:18777428-18777548 8.17e-01 120 chr2L:16526743-16526863 9.99e-01 120 chr2R:22144260-22144380 7.05e-04 16_[+1(7.38e-05)]_31_[+1(1.78e-06)]_\ 57 chr2L:11966123-11966243 7.68e-01 120 chr3R:13793453-13793573 9.00e-01 120 chr2L:19905320-19905440 7.48e-01 120 chr3L:14055475-14055595 9.96e-01 120 chrM:2706-2826 2.45e-01 120 chrX:2455534-2455654 1.52e-02 87_[+1(8.17e-05)]_25 chr2L:11220941-11221061 9.99e-01 120 chr3L:2795710-2795830 9.26e-01 120 chr2R:16812894-16813014 6.81e-01 120 chr3R:23148509-23148629 8.14e-07 32_[+4(9.84e-05)]_48_[+1(6.92e-06)]_\ 24 chr2L:9736164-9736284 2.91e-02 96_[+2(3.36e-05)]_16 chrX:6458048-6458168 9.88e-01 120 chr3R:9913578-9913698 1.23e-01 5_[+2(6.06e-05)]_107 chr2R:10599118-10599238 8.02e-01 120 chrX:1466252-1466372 6.48e-01 120 chr3R:21648637-21648757 6.85e-01 120 chr2L:16498163-16498283 5.05e-01 120 chrX:2648093-2648213 1.39e-03 41_[+1(1.80e-05)]_71 chr2L:7573346-7573466 8.26e-01 120 chrX:2788776-2788896 1.23e-01 82_[+2(3.36e-05)]_30 chr3L:20953384-20953504 9.39e-01 120 chr2L:3341720-3341840 5.45e-01 120 chr2L:3554063-3554183 8.11e-01 120 chr3R:31059860-31059980 3.91e-01 120 chr3R:15580772-15580892 1.57e-01 120 chr3L:1087427-1087547 9.44e-01 120 chrM:14393-14513 9.02e-01 120 chr2R:7615663-7615783 9.99e-01 120 chr3R:29763932-29764052 4.52e-01 120 chrM:7444-7564 1.48e-02 9_[+2(7.98e-06)]_103 chr3R:8116054-8116174 1.24e-01 90_[+3(4.24e-05)]_22 chr2R:24807826-24807946 5.55e-01 120 chr3R:22628047-22628167 8.37e-01 120 chr3L:729476-729596 6.16e-01 120 chr3R:5103743-5103863 2.36e-02 99_[+2(2.50e-05)]_13 chr2L:11394263-11394383 2.32e-01 53_[+5(9.38e-05)]_59 chrX:11550185-11550305 9.59e-01 120 chr2R:23014895-23015015 3.75e-01 120 chrX:17814906-17815026 5.76e-01 120 chr3R:23504859-23504979 6.60e-04 103_[+3(1.65e-06)]_9 chr3R:27593349-27593469 4.09e-01 120 chr3R:31062753-31062873 9.52e-01 120 chr3R:21827585-21827705 6.96e-01 120 chr2L:7992072-7992192 7.27e-01 120 chrX:1320537-1320657 8.61e-02 120 chr2R:6994720-6994840 4.37e-01 120 chr2L:1887846-1887966 3.18e-03 95_[+3(3.64e-05)]_17 chr2R:20136852-20136972 5.67e-01 120 chr2R:10771996-10772116 6.05e-02 120 chr3R:4884017-4884137 7.06e-01 120 chrX:19164860-19164980 2.96e-03 120 chr2R:14782989-14783109 9.54e-01 120 chr3L:3513182-3513302 5.48e-01 120 chr2R:19187345-19187465 9.86e-01 120 chrM:5369-5489 4.23e-02 76_[+2(7.98e-06)]_36 chrM:3534-3654 3.35e-03 9_[+2(3.36e-05)]_103 chr3L:3246872-3246992 8.03e-01 120 chrX:8667839-8667959 4.12e-01 120 chr3L:3612755-3612875 9.02e-01 120 chr3L:785857-785977 9.99e-01 120 chrX:5044571-5044691 3.17e-01 120 chrX:7892646-7892766 9.96e-01 120 chr2R:19913889-19914009 8.58e-01 120 chr3L:8368817-8368937 5.07e-02 91_[+5(9.38e-05)]_21 chrX:13541348-13541468 2.96e-01 120 chr2R:20065622-20065742 2.83e-02 120 chr3L:1458112-1458232 2.12e-01 120 chrX:2452904-2453024 7.35e-02 120 chr2L:7973985-7974105 9.59e-01 120 chr2R:10237717-10237837 9.98e-01 120 chr3R:20001601-20001721 2.07e-02 104_[+2(2.50e-05)]_8 chr3L:764422-764542 1.20e-01 120 chr3L:15180906-15181026 9.83e-01 120 chr3R:29538578-29538698 9.67e-01 120 chr3L:3449896-3450016 9.73e-02 120 chr2R:13478534-13478654 6.80e-01 120 chrM:6191-6311 4.03e-01 17_[+2(5.20e-05)]_95 chr3R:30689838-30689958 6.25e-01 120 chr2R:18312674-18312794 5.82e-01 120 chr3R:8893146-8893266 8.83e-01 120 chr3R:10579692-10579812 6.28e-01 120 chr3R:15566497-15566617 2.31e-01 120 chr3L:21099096-21099216 3.21e-01 120 chr3R:25461843-25461963 7.55e-01 120 chrX:8273900-8274020 7.05e-09 4_[+5(8.19e-07)]_9_[+1(1.78e-06)]_\ 91 chr3L:11293374-11293494 4.58e-01 120 chrM:5163-5283 7.87e-01 120 chr3R:9934999-9935119 6.06e-01 120 chr3L:11365858-11365978 8.22e-07 10_[+1(1.78e-06)]_6_[+3(8.17e-07)]_\ 88 chr3R:29778201-29778321 9.41e-01 120 chr2R:7531280-7531400 9.91e-01 120 chr3L:18198915-18199035 7.92e-01 120 chr3L:6220277-6220397 2.96e-01 120 chr3L:12409101-12409221 4.47e-01 120 chr3L:388245-388365 8.43e-01 120 chrX:14897794-14897914 9.98e-01 120 chrX:5026161-5026281 9.06e-01 120 chrX:5025471-5025591 9.83e-01 120 chr2R:6144344-6144464 1.11e-01 1_[+2(8.55e-05)]_111 chrX:21074470-21074590 1.46e-01 108_[+1(9.40e-05)]_4 chrX:779457-779577 8.41e-02 120 chr2R:23022641-23022761 3.46e-01 120 chr3L:818537-818657 4.69e-02 97_[+1(6.81e-05)]_15 chrX:9656498-9656618 9.97e-01 120 chr3R:27140028-27140148 3.60e-01 120 chr2L:11222171-11222291 3.02e-02 24_[+1(1.23e-05)]_88 chr3R:8470712-8470832 9.99e-01 120 chr2L:19142591-19142711 7.98e-01 120 chrM:10740-10860 1.90e-02 55_[+5(2.60e-06)]_57 chr3L:11297649-11297769 8.42e-01 120 chrX:17298096-17298216 7.56e-01 120 chr2R:17459070-17459190 3.23e-01 120 chr2L:1427905-1428025 2.55e-04 13_[+1(3.59e-06)]_99 chr2L:11328472-11328592 9.77e-01 120 chr2L:11066117-11066237 8.87e-01 120 chr2R:8195165-8195285 5.67e-01 120 chr3L:5819427-5819547 8.84e-01 120 chr2R:18308275-18308395 2.04e-02 49_[+2(2.50e-05)]_63 chrX:10104614-10104734 7.50e-01 120 chr3R:8142244-8142364 9.98e-01 120 chrX:17571111-17571231 3.42e-01 120 chr2L:7574480-7574600 5.10e-02 120 chr2R:10160322-10160442 8.50e-02 9_[+1(2.56e-05)]_103 chr2L:10791431-10791551 9.77e-01 120 chrM:8631-8751 8.65e-01 120 chr3R:20765848-20765968 1.57e-01 120 chr3R:16336567-16336687 7.55e-01 120 chrM:8840-8960 1.22e-01 67_[+1(6.81e-05)]_45 chr3L:4619944-4620064 2.35e-01 103_[+2(5.20e-05)]_9 chr2L:1409824-1409944 6.98e-01 120 chr3L:16489998-16490118 4.08e-01 120 chr2R:9444457-9444577 9.39e-01 120 chr2R:19153404-19153524 8.56e-01 120 chr2L:18871846-18871966 4.53e-01 120 chrX:4113760-4113880 1.11e-01 120 chr2R:11183181-11183301 9.94e-01 120 chr3R:28633886-28634006 9.80e-01 120 chr3L:20403649-20403769 4.55e-01 120 chr2R:6556934-6557054 9.03e-01 120 chr2R:12741662-12741782 9.98e-01 120 chr3R:30281413-30281533 4.24e-01 120 chr2R:23299451-23299571 8.93e-01 120 chr3R:13934783-13934903 9.80e-01 120 chrX:8244494-8244614 8.91e-01 120 chr2L:675013-675133 9.85e-01 120 chr2L:7897337-7897457 7.98e-01 120 chr3L:2802190-2802310 1.27e-02 71_[+1(2.17e-05)]_41 chr2R:7092991-7093111 7.18e-01 120 chr2R:19969839-19969959 7.35e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************